Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799930 | XP_003612158.1 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799930 | sp|Q8LL11|WUS_PETHY | 48.797 | 291 | 99 | 12 | 27 | 297 | 42 | 302 | 1.66e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799930 | B7UCW4 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0799930 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799930 | MtrunA17_Chr5g0405351 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 599 |
| Msa0799930 | MtrunA17_Chr4g0043891 | 67.164 | 67 | 21 | 1 | 28 | 94 | 4 | 69 | 1.91e-25 | 102 |
| Msa0799930 | MtrunA17_Chr8g0392991 | 64.000 | 75 | 26 | 1 | 20 | 94 | 84 | 157 | 2.29e-25 | 103 |
| Msa0799930 | MtrunA17_Chr5g0436661 | 59.459 | 74 | 26 | 2 | 32 | 102 | 33 | 105 | 2.53e-24 | 97.4 |
| Msa0799930 | MtrunA17_Chr7g0238431 | 67.692 | 65 | 20 | 1 | 30 | 94 | 6 | 69 | 8.04e-24 | 96.7 |
| Msa0799930 | MtrunA17_Chr4g0031341 | 68.254 | 63 | 19 | 1 | 32 | 94 | 25 | 86 | 2.15e-23 | 96.7 |
| Msa0799930 | MtrunA17_Chr1g0153171 | 55.844 | 77 | 33 | 1 | 18 | 94 | 76 | 151 | 3.87e-22 | 92.8 |
| Msa0799930 | MtrunA17_Chr8g0385441 | 78.723 | 47 | 10 | 0 | 48 | 94 | 97 | 143 | 3.64e-19 | 82.8 |
| Msa0799930 | MtrunA17_Chr3g0125111 | 76.596 | 47 | 11 | 0 | 48 | 94 | 95 | 141 | 5.79e-19 | 82.4 |
| Msa0799930 | MtrunA17_Chr7g0223471 | 48.438 | 64 | 32 | 1 | 32 | 95 | 47 | 109 | 1.06e-14 | 73.9 |
| Msa0799930 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 37 | 1 | 26 | 94 | 49 | 116 | 6.57e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799930 | AT2G17950.1 | 41.313 | 259 | 104 | 9 | 27 | 259 | 33 | 269 | 3.67e-46 | 157 |
| Msa0799930 | AT5G59340.1 | 63.514 | 74 | 26 | 1 | 21 | 94 | 3 | 75 | 1.97e-25 | 102 |
| Msa0799930 | AT3G18010.1 | 70.769 | 65 | 18 | 1 | 30 | 94 | 74 | 137 | 2.25e-25 | 104 |
| Msa0799930 | AT3G11260.1 | 60.000 | 75 | 27 | 2 | 20 | 94 | 14 | 85 | 1.00e-23 | 95.9 |
| Msa0799930 | AT2G28610.1 | 65.152 | 66 | 22 | 1 | 29 | 94 | 5 | 69 | 4.42e-23 | 95.9 |
| Msa0799930 | AT5G05770.1 | 62.319 | 69 | 25 | 1 | 32 | 100 | 29 | 96 | 7.14e-23 | 92.0 |
| Msa0799930 | AT1G46480.2 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 1.52e-22 | 93.2 |
| Msa0799930 | AT1G46480.1 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 6.86e-22 | 92.8 |
| Msa0799930 | AT2G01500.1 | 61.017 | 59 | 22 | 1 | 29 | 87 | 58 | 115 | 1.00e-18 | 84.3 |
| Msa0799930 | AT5G45980.1 | 52.381 | 63 | 29 | 1 | 32 | 94 | 55 | 116 | 1.12e-14 | 73.9 |
| Msa0799930 | AT2G33880.2 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.15e-14 | 73.6 |
| Msa0799930 | AT2G33880.1 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.18e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5_3:+13353287 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5_3:+13353150 | None:intergenic |
| TTCACCAAACAATGGGATTA+TGG | 0.189862 | 5_3:-13354389 | Msa0799930:CDS |
| CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 5_3:-13354102 | Msa0799930:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5_3:+13352967 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5_3:+13353243 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5_3:+13353201 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5_3:+13354277 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5_3:-13353177 | Msa0799930:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5_3:+13354337 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5_3:-13353849 | Msa0799930:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5_3:-13353081 | Msa0799930:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5_3:+13353132 | None:intergenic |
| TCACCAAACAATGGGATTAT+GGG | 0.391816 | 5_3:-13354388 | Msa0799930:CDS |
| GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 5_3:+13354115 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5_3:-13353855 | Msa0799930:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5_3:-13354250 | Msa0799930:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5_3:+13354076 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5_3:-13352993 | Msa0799930:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5_3:-13354022 | Msa0799930:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5_3:-13353022 | Msa0799930:CDS |
| ATGAAATGTTGTAATTAGAA+AGG | 0.429559 | 5_3:+13354029 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5_3:+13353133 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5_3:-13354180 | Msa0799930:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5_3:+13354132 | None:intergenic |
| CTGCCCATAATCCCATTGTT+TGG | 0.443872 | 5_3:+13354385 | None:intergenic |
| AACAACATTCACCAAACAAT+GGG | 0.452239 | 5_3:-13354396 | Msa0799930:CDS |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5_3:+13353850 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5_3:+13354133 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5_3:-13353000 | Msa0799930:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5_3:-13353205 | Msa0799930:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5_3:-13353864 | Msa0799930:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5_3:+13353085 | None:intergenic |
| TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | 5_3:+13354415 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5_3:-13354329 | Msa0799930:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5_3:-13353883 | Msa0799930:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5_3:-13353282 | Msa0799930:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5_3:-13354310 | Msa0799930:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5_3:-13354238 | Msa0799930:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5_3:-13353315 | Msa0799930:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5_3:-13353336 | Msa0799930:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5_3:-13353120 | Msa0799930:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5_3:-13353054 | Msa0799930:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5_3:-13353287 | Msa0799930:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5_3:-13353042 | Msa0799930:CDS |
| TGTTGTGGTTGTTGTTGTTG+AGG | 0.541096 | 5_3:+13354430 | None:intergenic |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5_3:+13353124 | None:intergenic |
| CAACAACATTCACCAAACAA+TGG | 0.552485 | 5_3:-13354397 | Msa0799930:CDS |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 5_3:+13353259 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5_3:+13353005 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5_3:+13353123 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5_3:-13353873 | Msa0799930:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5_3:-13353074 | Msa0799930:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5_3:-13353078 | Msa0799930:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5_3:-13353291 | Msa0799930:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5_3:-13353835 | Msa0799930:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5_3:-13354264 | Msa0799930:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5_3:+13352992 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5_3:+13353280 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5_3:-13354366 | Msa0799930:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5_3:+13353279 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5_3:+13353136 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5_3:+13353137 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5_3:-13353189 | Msa0799930:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5_3:-13354363 | Msa0799930:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5_3:-13353117 | Msa0799930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5_3:13353662-13353681 | None:intergenic | 10.0% |
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5_3:13353662-13353681 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5_3:13353429-13353448 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5_3:13353663-13353682 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5_3:13353798-13353817 | Msa0799930:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5_3:13353858-13353877 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5_3:13353954-13353973 | Msa0799930:intron | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5_3:13353429-13353448 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5_3:13353663-13353682 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5_3:13353798-13353817 | Msa0799930:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5_3:13353858-13353877 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5_3:13353954-13353973 | Msa0799930:intron | 15.0% |
| !! | ATGAAATGTTGTAATTAGAA+AGG | + | chr5_3:13353385-13353404 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5_3:13353485-13353504 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5_3:13353829-13353848 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5_3:13354330-13354349 | Msa0799930:CDS | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+AGG | + | chr5_3:13353385-13353404 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5_3:13353485-13353504 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5_3:13353829-13353848 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5_3:13354330-13354349 | Msa0799930:CDS | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5_3:13353082-13353101 | Msa0799930:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5_3:13353192-13353211 | Msa0799930:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | + | chr5_3:13353299-13353318 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | chr5_3:13354056-13354075 | Msa0799930:CDS | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5_3:13354329-13354348 | None:intergenic | 25.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5_3:13353082-13353101 | Msa0799930:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5_3:13353192-13353211 | Msa0799930:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | + | chr5_3:13353299-13353318 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | chr5_3:13354056-13354075 | Msa0799930:CDS | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5_3:13354329-13354348 | None:intergenic | 25.0% |
| AACAACATTCACCAAACAAT+GGG | - | chr5_3:13353015-13353034 | Msa0799930:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5_3:13353077-13353096 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5_3:13353101-13353120 | Msa0799930:CDS | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5_3:13353389-13353408 | Msa0799930:intron | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5_3:13353493-13353512 | Msa0799930:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5_3:13353494-13353513 | Msa0799930:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5_3:13353816-13353835 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5_3:13353840-13353859 | None:intergenic | 30.0% | |
| !! | AAAAGCATTAACTCTCTTGT+TGG | + | chr5_3:13353927-13353946 | None:intergenic | 30.0% |
| AATATGGATCAACATGATGA+TGG | + | chr5_3:13354155-13354174 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5_3:13354171-13354190 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5_3:13354206-13354225 | Msa0799930:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5_3:13354213-13354232 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5_3:13354222-13354241 | Msa0799930:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5_3:13354234-13354253 | Msa0799930:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5_3:13354333-13354352 | Msa0799930:CDS | 30.0% | |
| AACAACATTCACCAAACAAT+GGG | - | chr5_3:13353015-13353034 | Msa0799930:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5_3:13353077-13353096 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5_3:13353101-13353120 | Msa0799930:CDS | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5_3:13353389-13353408 | Msa0799930:intron | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5_3:13353493-13353512 | Msa0799930:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5_3:13353494-13353513 | Msa0799930:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5_3:13353816-13353835 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5_3:13353840-13353859 | None:intergenic | 30.0% | |
| !! | AAAAGCATTAACTCTCTTGT+TGG | + | chr5_3:13353927-13353946 | None:intergenic | 30.0% |
| AATATGGATCAACATGATGA+TGG | + | chr5_3:13354155-13354174 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5_3:13354171-13354190 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5_3:13354206-13354225 | Msa0799930:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5_3:13354213-13354232 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5_3:13354222-13354241 | Msa0799930:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5_3:13354234-13354253 | Msa0799930:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5_3:13354333-13354352 | Msa0799930:CDS | 30.0% | |
| CAACAACATTCACCAAACAA+TGG | - | chr5_3:13353014-13353033 | Msa0799930:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | - | chr5_3:13353022-13353041 | Msa0799930:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | - | chr5_3:13353023-13353042 | Msa0799930:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5_3:13353173-13353192 | Msa0799930:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5_3:13353231-13353250 | Msa0799930:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5_3:13353281-13353300 | None:intergenic | 35.0% |
| CTATTATTGCTGCTGCTAAT+TGG | - | chr5_3:13353309-13353328 | Msa0799930:CDS | 35.0% | |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5_3:13353338-13353357 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | + | chr5_3:13353564-13353583 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5_3:13353562-13353581 | Msa0799930:intron | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5_3:13353590-13353609 | Msa0799930:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5_3:13353594-13353613 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5_3:13353591-13353610 | Msa0799930:intron | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5_3:13353595-13353614 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | + | chr5_3:13353694-13353713 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5_3:13353724-13353743 | Msa0799930:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5_3:13353759-13353778 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5_3:13354337-13354356 | Msa0799930:CDS | 35.0% | |
| CAACAACATTCACCAAACAA+TGG | - | chr5_3:13353014-13353033 | Msa0799930:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | - | chr5_3:13353022-13353041 | Msa0799930:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | - | chr5_3:13353023-13353042 | Msa0799930:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5_3:13353173-13353192 | Msa0799930:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5_3:13353231-13353250 | Msa0799930:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5_3:13353281-13353300 | None:intergenic | 35.0% |
| CTATTATTGCTGCTGCTAAT+TGG | - | chr5_3:13353309-13353328 | Msa0799930:CDS | 35.0% | |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5_3:13353338-13353357 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | + | chr5_3:13353564-13353583 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5_3:13353562-13353581 | Msa0799930:intron | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5_3:13353590-13353609 | Msa0799930:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5_3:13353594-13353613 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5_3:13353591-13353610 | Msa0799930:intron | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5_3:13353595-13353614 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | + | chr5_3:13353694-13353713 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5_3:13353724-13353743 | Msa0799930:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5_3:13353759-13353778 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5_3:13354337-13354356 | Msa0799930:CDS | 35.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | + | chr5_3:13352984-13353003 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5_3:13353147-13353166 | Msa0799930:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5_3:13353161-13353180 | Msa0799930:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5_3:13353282-13353301 | None:intergenic | 40.0% |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5_3:13353528-13353547 | Msa0799930:intron | 40.0% | |
| AGCATTAACTCTCTTGTTGG+TGG | + | chr5_3:13353924-13353943 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5_3:13354120-13354139 | Msa0799930:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5_3:13354264-13354283 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5_3:13354277-13354296 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5_3:13354281-13354300 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5_3:13354282-13354301 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5_3:13354290-13354309 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5_3:13354291-13354310 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5_3:13354291-13354310 | Msa0799930:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5_3:13354369-13354388 | Msa0799930:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5_3:13354411-13354430 | Msa0799930:CDS | 40.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | + | chr5_3:13352984-13353003 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5_3:13353147-13353166 | Msa0799930:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5_3:13353161-13353180 | Msa0799930:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5_3:13353282-13353301 | None:intergenic | 40.0% |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5_3:13353528-13353547 | Msa0799930:intron | 40.0% | |
| AGCATTAACTCTCTTGTTGG+TGG | + | chr5_3:13353924-13353943 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5_3:13354120-13354139 | Msa0799930:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5_3:13354264-13354283 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5_3:13354277-13354296 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5_3:13354281-13354300 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5_3:13354282-13354301 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5_3:13354290-13354309 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5_3:13354291-13354310 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5_3:13354291-13354310 | Msa0799930:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5_3:13354369-13354388 | Msa0799930:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5_3:13354411-13354430 | Msa0799930:CDS | 40.0% | |
| CTGCCCATAATCCCATTGTT+TGG | + | chr5_3:13353029-13353048 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5_3:13353045-13353064 | Msa0799930:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5_3:13353048-13353067 | Msa0799930:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5_3:13353137-13353156 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5_3:13353538-13353557 | Msa0799930:intron | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5_3:13353547-13353566 | Msa0799930:intron | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5_3:13353556-13353575 | Msa0799930:intron | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5_3:13353576-13353595 | Msa0799930:intron | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5_3:13353734-13353753 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | + | chr5_3:13353741-13353760 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5_3:13354075-13354094 | Msa0799930:CDS | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5_3:13354096-13354115 | Msa0799930:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5_3:13354127-13354146 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5_3:13354124-13354143 | Msa0799930:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5_3:13354129-13354148 | Msa0799930:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5_3:13354278-13354297 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5_3:13354294-13354313 | Msa0799930:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5_3:13354357-13354376 | Msa0799930:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5_3:13354389-13354408 | Msa0799930:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5_3:13354409-13354428 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5_3:13354422-13354441 | None:intergenic | 45.0% | |
| CTGCCCATAATCCCATTGTT+TGG | + | chr5_3:13353029-13353048 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5_3:13353045-13353064 | Msa0799930:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5_3:13353048-13353067 | Msa0799930:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5_3:13353137-13353156 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5_3:13353538-13353557 | Msa0799930:intron | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5_3:13353547-13353566 | Msa0799930:intron | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5_3:13353556-13353575 | Msa0799930:intron | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5_3:13353576-13353595 | Msa0799930:intron | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5_3:13353734-13353753 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | + | chr5_3:13353741-13353760 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5_3:13354075-13354094 | Msa0799930:CDS | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5_3:13354096-13354115 | Msa0799930:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5_3:13354127-13354146 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5_3:13354124-13354143 | Msa0799930:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5_3:13354129-13354148 | Msa0799930:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5_3:13354278-13354297 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5_3:13354294-13354313 | Msa0799930:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5_3:13354357-13354376 | Msa0799930:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5_3:13354389-13354408 | Msa0799930:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5_3:13354409-13354428 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5_3:13354422-13354441 | None:intergenic | 45.0% | |
| !!! | CTTTTAAATTAAAATTAAAA+TGG | + | chr5_3:13354031-13354050 | None:intergenic | 5.0% |
| !!! | CTTTTAAATTAAAATTAAAA+TGG | + | chr5_3:13354031-13354050 | None:intergenic | 5.0% |
| TGTTGTGTCTGCTGCTGTTG+TGG | + | chr5_3:13352999-13353018 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5_3:13354134-13354153 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5_3:13354135-13354154 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5_3:13354418-13354437 | Msa0799930:CDS | 50.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | + | chr5_3:13352999-13353018 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5_3:13354134-13354153 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5_3:13354135-13354154 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5_3:13354418-13354437 | Msa0799930:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13352972 | 13354461 | 13352972 | ID=Msa0799930;Name=Msa0799930 |
| chr5_3 | mRNA | 13352972 | 13354461 | 13352972 | ID=Msa0799930-mRNA-1;Parent=Msa0799930;Name=Msa0799930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|306 |
| chr5_3 | exon | 13354023 | 13354461 | 13354023 | ID=Msa0799930-mRNA-1:exon:5474;Parent=Msa0799930-mRNA-1 |
| chr5_3 | exon | 13353821 | 13353918 | 13353821 | ID=Msa0799930-mRNA-1:exon:5473;Parent=Msa0799930-mRNA-1 |
| chr5_3 | exon | 13352972 | 13353355 | 13352972 | ID=Msa0799930-mRNA-1:exon:5472;Parent=Msa0799930-mRNA-1 |
| chr5_3 | CDS | 13354023 | 13354461 | 13354023 | ID=Msa0799930-mRNA-1:cds;Parent=Msa0799930-mRNA-1 |
| chr5_3 | CDS | 13353821 | 13353918 | 13353821 | ID=Msa0799930-mRNA-1:cds;Parent=Msa0799930-mRNA-1 |
| chr5_3 | CDS | 13352972 | 13353355 | 13352972 | ID=Msa0799930-mRNA-1:cds;Parent=Msa0799930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
