Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800830 | XP_003612350.1 | 92.262 | 336 | 20 | 1 | 1 | 336 | 1 | 330 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800830 | sp|O81791|RKD5_ARATH | 50.000 | 328 | 142 | 8 | 1 | 319 | 40 | 354 | 3.30e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800830 | G7K041 | 92.262 | 336 | 20 | 1 | 1 | 336 | 1 | 330 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0800830 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800830 | MtrunA17_Chr5g0406901 | 92.262 | 336 | 20 | 1 | 1 | 336 | 1 | 330 | 0.0 | 628 |
| Msa0800830 | MtrunA17_Chr3g0092141 | 35.556 | 135 | 79 | 2 | 187 | 320 | 38 | 165 | 1.83e-21 | 90.5 |
| Msa0800830 | MtrunA17_Chr4g0060761 | 36.090 | 133 | 81 | 1 | 197 | 329 | 145 | 273 | 2.15e-21 | 92.0 |
| Msa0800830 | MtrunA17_Chr3g0127001 | 37.600 | 125 | 60 | 2 | 196 | 320 | 148 | 254 | 3.31e-19 | 85.9 |
| Msa0800830 | MtrunA17_Chr1g0182631 | 37.600 | 125 | 60 | 2 | 196 | 320 | 121 | 227 | 2.20e-18 | 82.8 |
| Msa0800830 | MtrunA17_Chr3g0136081 | 47.126 | 87 | 41 | 2 | 205 | 289 | 414 | 497 | 4.75e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800830 | AT4G35590.1 | 50.000 | 328 | 142 | 8 | 1 | 319 | 40 | 354 | 3.35e-92 | 280 |
| Msa0800830 | AT4G35590.2 | 50.318 | 314 | 134 | 8 | 15 | 319 | 4 | 304 | 6.73e-89 | 270 |
| Msa0800830 | AT1G74480.1 | 45.217 | 115 | 58 | 2 | 205 | 317 | 131 | 242 | 7.09e-22 | 94.4 |
| Msa0800830 | AT1G18790.1 | 45.192 | 104 | 54 | 1 | 215 | 318 | 136 | 236 | 8.66e-22 | 93.6 |
| Msa0800830 | AT5G66990.1 | 42.727 | 110 | 59 | 2 | 212 | 320 | 164 | 270 | 3.49e-20 | 89.4 |
| Msa0800830 | AT5G53040.1 | 42.609 | 115 | 53 | 1 | 206 | 320 | 147 | 248 | 3.58e-20 | 89.0 |
| Msa0800830 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 199 | 262 | 346 | 409 | 1.84e-13 | 71.2 |
Find 64 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTCATCTTCATCTTCA+TGG | 0.203507 | 5_3:+14410541 | Msa0800830:intron |
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_3:+14412802 | Msa0800830:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_3:+14412890 | Msa0800830:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5_3:+14410874 | Msa0800830:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_3:+14412952 | Msa0800830:CDS |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_3:-14412267 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5_3:+14412458 | Msa0800830:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_3:+14412257 | Msa0800830:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_3:+14412356 | Msa0800830:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_3:-14411009 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5_3:-14410885 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.377748 | 5_3:-14412285 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_3:+14412912 | Msa0800830:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5_3:+14410931 | Msa0800830:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_3:-14413717 | None:intergenic |
| GAAAATGAAGAAGAAGAAGT+TGG | 0.392727 | 5_3:-14410519 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396249 | 5_3:+14412413 | Msa0800830:CDS |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_3:-14412351 | None:intergenic |
| GAGTTTGTGTTTCCTGAGAA+TGG | 0.398574 | 5_3:+14410837 | Msa0800830:CDS |
| CATAGAGAAGAGGCTCTTCA+TGG | 0.402183 | 5_3:+14413599 | Msa0800830:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_3:-14410800 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_3:+14412855 | Msa0800830:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 5_3:-14413550 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_3:+14413572 | Msa0800830:CDS |
| ACAGGCAAGACTTTCTTTAG+TGG | 0.459764 | 5_3:-14412402 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.464269 | 5_3:-14412825 | None:intergenic |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_3:+14412873 | Msa0800830:CDS |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 5_3:-14413637 | None:intergenic |
| GCAAGACTTTCTTTAGTGGT+TGG | 0.481995 | 5_3:-14412398 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5_3:-14412450 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_3:+14412903 | Msa0800830:CDS |
| TCAACATAAGAACCATTCTC+AGG | 0.492545 | 5_3:-14410849 | None:intergenic |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 5_3:+14413547 | Msa0800830:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5_3:+14413506 | Msa0800830:intron |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_3:+14413560 | Msa0800830:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5_3:-14412280 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 5_3:-14410505 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_3:+14410803 | Msa0800830:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.518286 | 5_3:+14412854 | Msa0800830:CDS |
| ATTGCATGTACCTGGTTGAA+TGG | 0.520241 | 5_3:-14410600 | None:intergenic |
| TCATGTGGAGATCATTAAGC+AGG | 0.525296 | 5_3:-14412290 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_3:-14412786 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_3:-14410986 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_3:+14412314 | Msa0800830:CDS |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_3:+14413512 | Msa0800830:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 5_3:-14413723 | None:intergenic |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_3:-14410987 | None:intergenic |
| TCTCCACATGATATACAAGT+TGG | 0.555482 | 5_3:+14412302 | Msa0800830:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_3:+14413511 | Msa0800830:CDS |
| GTTCCAACTTGTATATCATG+TGG | 0.569302 | 5_3:-14412305 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 5_3:+14413589 | Msa0800830:CDS |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_3:-14410567 | None:intergenic |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_3:+14413533 | Msa0800830:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_3:-14412926 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5_3:-14412420 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_3:+14413515 | Msa0800830:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_3:+14412347 | Msa0800830:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_3:+14410792 | Msa0800830:CDS |
| TTCAACAACACCATTCAACC+AGG | 0.645034 | 5_3:+14410590 | Msa0800830:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_3:+14412346 | Msa0800830:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_3:-14412793 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_3:-14412917 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_3:+14412360 | Msa0800830:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_3:+14410795 | Msa0800830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | + | chr5_3:14412610-14412629 | Msa0800830:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | - | chr5_3:14412985-14413004 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | - | chr5_3:14411048-14411067 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | - | chr5_3:14411049-14411068 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | + | chr5_3:14411076-14411095 | Msa0800830:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | + | chr5_3:14412618-14412637 | Msa0800830:intron | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTG+TGG | + | chr5_3:14410711-14410730 | Msa0800830:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTGT+GGG | + | chr5_3:14410712-14410731 | Msa0800830:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | + | chr5_3:14411075-14411094 | Msa0800830:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | - | chr5_3:14411557-14411576 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | - | chr5_3:14411631-14411650 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | - | chr5_3:14411632-14411651 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | + | chr5_3:14411816-14411835 | Msa0800830:intron | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | + | chr5_3:14412199-14412218 | Msa0800830:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | - | chr5_3:14412605-14412624 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | + | chr5_3:14412760-14412779 | Msa0800830:CDS | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | + | chr5_3:14412802-14412821 | Msa0800830:CDS | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | - | chr5_3:14413145-14413164 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | + | chr5_3:14413170-14413189 | Msa0800830:intron | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | - | chr5_3:14413296-14413315 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | - | chr5_3:14413398-14413417 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTGTG+GGG | + | chr5_3:14410713-14410732 | Msa0800830:intron | 25.0% |
| !! | TTTCTGTAGAGATTTTTGAA+GGG | + | chr5_3:14410913-14410932 | Msa0800830:CDS | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | + | chr5_3:14410924-14410943 | Msa0800830:CDS | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | - | chr5_3:14411558-14411577 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | - | chr5_3:14411774-14411793 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | + | chr5_3:14412241-14412260 | Msa0800830:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | - | chr5_3:14412694-14412713 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | + | chr5_3:14412759-14412778 | Msa0800830:CDS | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | - | chr5_3:14412796-14412815 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | - | chr5_3:14413059-14413078 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | - | chr5_3:14413084-14413103 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | + | chr5_3:14413134-14413153 | Msa0800830:intron | 25.0% |
| ! | GTACAGAAAATATTTGTACA+AGG | - | chr5_3:14413213-14413232 | None:intergenic | 25.0% |
| ! | GTTGTCAATTAGTATATGTT+TGG | + | chr5_3:14413237-14413256 | Msa0800830:intron | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | + | chr5_3:14410421-14410440 | Msa0800830:five_prime_UTR | 30.0% | |
| GAAAATGAAGAAGAAGAAGT+TGG | - | chr5_3:14410522-14410541 | None:intergenic | 30.0% | |
| GATTTCAACAACCTAAGAAT+TGG | - | chr5_3:14410888-14410907 | None:intergenic | 30.0% | |
| ! | GTTTCTGTAGAGATTTTTGA+AGG | + | chr5_3:14410912-14410931 | Msa0800830:CDS | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | - | chr5_3:14410989-14411008 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | - | chr5_3:14411012-14411031 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | + | chr5_3:14411085-14411104 | Msa0800830:intron | 30.0% |
| GTACCAATGTTGTTAAATAG+CGG | + | chr5_3:14411140-14411159 | Msa0800830:intron | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | - | chr5_3:14411222-14411241 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | + | chr5_3:14411246-14411265 | Msa0800830:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr5_3:14411409-14411428 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | - | chr5_3:14411842-14411861 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | + | chr5_3:14412067-14412086 | Msa0800830:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | + | chr5_3:14412068-14412087 | Msa0800830:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | - | chr5_3:14412237-14412256 | None:intergenic | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | - | chr5_3:14412571-14412590 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+AGG | - | chr5_3:14412677-14412696 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | - | chr5_3:14412828-14412847 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | + | chr5_3:14412855-14412874 | Msa0800830:CDS | 30.0% | |
| AGAGTTTGATAAAATCACAG+TGG | + | chr5_3:14413268-14413287 | Msa0800830:intron | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | + | chr5_3:14413388-14413407 | Msa0800830:intron | 30.0% |
| TAAGGAGTTCACTTAAAGAT+TGG | - | chr5_3:14413467-14413486 | None:intergenic | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | + | chr5_3:14413572-14413591 | Msa0800830:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | + | chr5_3:14413589-14413608 | Msa0800830:CDS | 30.0% | |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | - | chr5_3:14410424-14410443 | None:intergenic | 35.0% |
| CATCTTCATCTTCATCTTCA+TGG | + | chr5_3:14410541-14410560 | Msa0800830:intron | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | + | chr5_3:14410729-14410748 | Msa0800830:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | + | chr5_3:14410730-14410749 | Msa0800830:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | + | chr5_3:14410731-14410750 | Msa0800830:intron | 35.0% |
| TCAACATAAGAACCATTCTC+AGG | - | chr5_3:14410852-14410871 | None:intergenic | 35.0% | |
| TGAAAGCTACTCCAATTCTT+AGG | + | chr5_3:14410874-14410893 | Msa0800830:CDS | 35.0% | |
| ! | AAGGGTATAAGAATGGAGTT+TGG | + | chr5_3:14410931-14410950 | Msa0800830:CDS | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | - | chr5_3:14410990-14411009 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | + | chr5_3:14410998-14411017 | Msa0800830:CDS | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | - | chr5_3:14411008-14411027 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | + | chr5_3:14411006-14411025 | Msa0800830:CDS | 35.0% |
| TAGCCGCTATTTAACAACAT+TGG | - | chr5_3:14411146-14411165 | None:intergenic | 35.0% | |
| TTGTTAAATAGCGGCTATAG+TGG | + | chr5_3:14411149-14411168 | Msa0800830:intron | 35.0% | |
| ! | GTTATAGTGCTATTGCATAG+CGG | + | chr5_3:14411173-14411192 | Msa0800830:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | + | chr5_3:14411188-14411207 | Msa0800830:intron | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | + | chr5_3:14411502-14411521 | Msa0800830:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | + | chr5_3:14411503-14411522 | Msa0800830:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | + | chr5_3:14411679-14411698 | Msa0800830:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | + | chr5_3:14411823-14411842 | Msa0800830:intron | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | + | chr5_3:14411843-14411862 | Msa0800830:intron | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | - | chr5_3:14411865-14411884 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | + | chr5_3:14411865-14411884 | Msa0800830:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | + | chr5_3:14411881-14411900 | Msa0800830:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | - | chr5_3:14411957-14411976 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | - | chr5_3:14411975-14411994 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | - | chr5_3:14412047-14412066 | None:intergenic | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | - | chr5_3:14412048-14412067 | None:intergenic | 35.0% | |
| ! | ACTGTTCCACAACATACTTT+TGG | + | chr5_3:14412049-14412068 | Msa0800830:intron | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | - | chr5_3:14412058-14412077 | None:intergenic | 35.0% |
| ATCATTAAGCAGGTTTGGAA+TGG | - | chr5_3:14412283-14412302 | None:intergenic | 35.0% | |
| TCTCCACATGATATACAAGT+TGG | + | chr5_3:14412302-14412321 | Msa0800830:CDS | 35.0% | |
| GTTCCAACTTGTATATCATG+TGG | - | chr5_3:14412308-14412327 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | - | chr5_3:14412330-14412349 | None:intergenic | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | + | chr5_3:14412489-14412508 | Msa0800830:CDS | 35.0% |
| GAACAACGTGATAATTGACT+GGG | - | chr5_3:14412549-14412568 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | + | chr5_3:14412737-14412756 | Msa0800830:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | + | chr5_3:14412746-14412765 | Msa0800830:intron | 35.0% |
| ! | TTCTTTGACGCTTTTGCAAT+TGG | - | chr5_3:14412845-14412864 | None:intergenic | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | + | chr5_3:14412854-14412873 | Msa0800830:CDS | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | + | chr5_3:14412890-14412909 | Msa0800830:CDS | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | - | chr5_3:14412929-14412948 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | + | chr5_3:14413184-14413203 | Msa0800830:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | + | chr5_3:14413320-14413339 | Msa0800830:intron | 35.0% |
| TATAGGCTTCAGTGCATATT+TGG | - | chr5_3:14413381-14413400 | None:intergenic | 35.0% | |
| GAGTTCACTTAAAGATTGGT+AGG | - | chr5_3:14413463-14413482 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | + | chr5_3:14413560-14413579 | Msa0800830:CDS | 35.0% | |
| AACATCTTGTCTGAATCTCT+TGG | - | chr5_3:14413640-14413659 | None:intergenic | 35.0% | |
| !! | GACAAGATGTTTTCAAGAGA+AGG | + | chr5_3:14413649-14413668 | Msa0800830:CDS | 35.0% |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | - | chr5_3:14410508-14410527 | None:intergenic | 40.0% |
| TTCAACAACACCATTCAACC+AGG | + | chr5_3:14410590-14410609 | Msa0800830:CDS | 40.0% | |
| ATTGCATGTACCTGGTTGAA+TGG | - | chr5_3:14410603-14410622 | None:intergenic | 40.0% | |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | + | chr5_3:14410732-14410751 | Msa0800830:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | + | chr5_3:14410733-14410752 | Msa0800830:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | - | chr5_3:14410803-14410822 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | + | chr5_3:14410803-14410822 | Msa0800830:CDS | 40.0% |
| GAGTTTGTGTTTCCTGAGAA+TGG | + | chr5_3:14410837-14410856 | Msa0800830:CDS | 40.0% | |
| TGATTAAAGCAGGGAAACCT+TGG | - | chr5_3:14411548-14411567 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | + | chr5_3:14411604-14411623 | Msa0800830:intron | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | - | chr5_3:14411864-14411883 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | - | chr5_3:14411872-14411891 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | + | chr5_3:14411887-14411906 | Msa0800830:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | + | chr5_3:14411988-14412007 | Msa0800830:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | - | chr5_3:14412041-14412060 | None:intergenic | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | + | chr5_3:14412073-14412092 | Msa0800830:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | - | chr5_3:14412229-14412248 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | + | chr5_3:14412257-14412276 | Msa0800830:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | - | chr5_3:14412288-14412307 | None:intergenic | 40.0% | |
| TCATGTGGAGATCATTAAGC+AGG | - | chr5_3:14412293-14412312 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | + | chr5_3:14412314-14412333 | Msa0800830:CDS | 40.0% |
| GCAAGACTTTCTTTAGTGGT+TGG | - | chr5_3:14412401-14412420 | None:intergenic | 40.0% | |
| ACAGGCAAGACTTTCTTTAG+TGG | - | chr5_3:14412405-14412424 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | - | chr5_3:14412423-14412442 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | - | chr5_3:14412453-14412472 | None:intergenic | 40.0% | |
| !!! | GCAGGTTTTGAAAGTTTACC+AGG | + | chr5_3:14412507-14412526 | Msa0800830:CDS | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+TGG | - | chr5_3:14412528-14412547 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | - | chr5_3:14412550-14412569 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | - | chr5_3:14412592-14412611 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | - | chr5_3:14412789-14412808 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | + | chr5_3:14412873-14412892 | Msa0800830:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | + | chr5_3:14412952-14412971 | Msa0800830:CDS | 40.0% | |
| GCTTCAGTGCATATTTGGAT+TGG | - | chr5_3:14413376-14413395 | None:intergenic | 40.0% | |
| GCGATGTTGTCATGTGTATA+AGG | - | chr5_3:14413485-14413504 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | + | chr5_3:14413511-14413530 | Msa0800830:CDS | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | + | chr5_3:14413512-14413531 | Msa0800830:CDS | 40.0% | |
| GAGAAGAAGAGTAATGAGCG+AGG | - | chr5_3:14410570-14410589 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | - | chr5_3:14410611-14410630 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | + | chr5_3:14410792-14410811 | Msa0800830:CDS | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | - | chr5_3:14411529-14411548 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | + | chr5_3:14411528-14411547 | Msa0800830:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | - | chr5_3:14411688-14411707 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | - | chr5_3:14411689-14411708 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | + | chr5_3:14412012-14412031 | Msa0800830:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | + | chr5_3:14412084-14412103 | Msa0800830:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | - | chr5_3:14412270-14412289 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | + | chr5_3:14412360-14412379 | Msa0800830:CDS | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | + | chr5_3:14412413-14412432 | Msa0800830:CDS | 45.0% | |
| AGAAGACGAGTCTGAGTTAC+TGG | + | chr5_3:14412458-14412477 | Msa0800830:CDS | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | + | chr5_3:14412903-14412922 | Msa0800830:CDS | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | + | chr5_3:14413323-14413342 | Msa0800830:intron | 45.0% |
| TTGCCTTCTTATCACTGCCA+TGG | - | chr5_3:14413553-14413572 | None:intergenic | 45.0% | |
| CATAGAGAAGAGGCTCTTCA+TGG | + | chr5_3:14413599-14413618 | Msa0800830:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | - | chr5_3:14410632-14410651 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | - | chr5_3:14410633-14410652 | None:intergenic | 5.0% |
| !!! | AAAAATTTGATTTTTTTTAA+TGG | + | chr5_3:14410668-14410687 | Msa0800830:intron | 5.0% |
| !!! | AAAATTTGATTTTTTTTAAT+GGG | + | chr5_3:14410669-14410688 | Msa0800830:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | + | chr5_3:14410795-14410814 | Msa0800830:CDS | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | + | chr5_3:14411254-14411273 | Msa0800830:intron | 50.0% | |
| GCTATGGCAGTGTTACATGG+CGG | + | chr5_3:14411270-14411289 | Msa0800830:intron | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | - | chr5_3:14411519-14411538 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | + | chr5_3:14411517-14411536 | Msa0800830:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | - | chr5_3:14411543-14411562 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | + | chr5_3:14411583-14411602 | Msa0800830:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | + | chr5_3:14412011-14412030 | Msa0800830:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | + | chr5_3:14412088-14412107 | Msa0800830:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | + | chr5_3:14412346-14412365 | Msa0800830:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | + | chr5_3:14412347-14412366 | Msa0800830:CDS | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | + | chr5_3:14412356-14412375 | Msa0800830:CDS | 50.0% | |
| CATTGAGACTGCCCGAATCA+CGG | - | chr5_3:14413353-14413372 | None:intergenic | 50.0% | |
| ACACATGACAACATCGCTGC+AGG | + | chr5_3:14413488-14413507 | Msa0800830:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | + | chr5_3:14413506-14413525 | Msa0800830:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | + | chr5_3:14413515-14413534 | Msa0800830:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | + | chr5_3:14413533-14413552 | Msa0800830:CDS | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | + | chr5_3:14413547-14413566 | Msa0800830:CDS | 50.0% | |
| GGCGCTATGGCAGTGTTACA+TGG | + | chr5_3:14411267-14411286 | Msa0800830:intron | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | - | chr5_3:14411995-14412014 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | - | chr5_3:14412354-14412373 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | + | chr5_3:14412912-14412931 | Msa0800830:CDS | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | - | chr5_3:14412920-14412939 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | - | chr5_3:14413334-14413353 | None:intergenic | 55.0% |
| GACAACATCGCTGCAGGAAG+AGG | + | chr5_3:14413494-14413513 | Msa0800830:intron | 55.0% | |
| CACGGTGGCTCACCGTGATT+CGG | + | chr5_3:14413338-14413357 | Msa0800830:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | + | chr5_3:14413339-14413358 | Msa0800830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 14410396 | 14413734 | 14410396 | ID=Msa0800830;Name=Msa0800830 |
| chr5_3 | mRNA | 14410396 | 14413734 | 14410396 | ID=Msa0800830-mRNA-1;Parent=Msa0800830;Name=Msa0800830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=143|0.8|0.66|1|0.8|0.66|6|0|336 |
| chr5_3 | exon | 14410396 | 14410528 | 14410396 | ID=Msa0800830-mRNA-1:exon:6065;Parent=Msa0800830-mRNA-1 |
| chr5_3 | exon | 14410550 | 14410611 | 14410550 | ID=Msa0800830-mRNA-1:exon:6066;Parent=Msa0800830-mRNA-1 |
| chr5_3 | exon | 14410775 | 14411027 | 14410775 | ID=Msa0800830-mRNA-1:exon:6067;Parent=Msa0800830-mRNA-1 |
| chr5_3 | exon | 14412263 | 14412528 | 14412263 | ID=Msa0800830-mRNA-1:exon:6068;Parent=Msa0800830-mRNA-1 |
| chr5_3 | exon | 14412759 | 14412973 | 14412759 | ID=Msa0800830-mRNA-1:exon:6069;Parent=Msa0800830-mRNA-1 |
| chr5_3 | exon | 14413510 | 14413734 | 14413510 | ID=Msa0800830-mRNA-1:exon:6070;Parent=Msa0800830-mRNA-1 |
| chr5_3 | five_prime_UTR | 14410396 | 14410528 | 14410396 | ID=Msa0800830-mRNA-1:five_prime_utr;Parent=Msa0800830-mRNA-1 |
| chr5_3 | five_prime_UTR | 14410550 | 14410559 | 14410550 | ID=Msa0800830-mRNA-1:five_prime_utr;Parent=Msa0800830-mRNA-1 |
| chr5_3 | CDS | 14410560 | 14410611 | 14410560 | ID=Msa0800830-mRNA-1:cds;Parent=Msa0800830-mRNA-1 |
| chr5_3 | CDS | 14410775 | 14411027 | 14410775 | ID=Msa0800830-mRNA-1:cds;Parent=Msa0800830-mRNA-1 |
| chr5_3 | CDS | 14412263 | 14412528 | 14412263 | ID=Msa0800830-mRNA-1:cds;Parent=Msa0800830-mRNA-1 |
| chr5_3 | CDS | 14412759 | 14412973 | 14412759 | ID=Msa0800830-mRNA-1:cds;Parent=Msa0800830-mRNA-1 |
| chr5_3 | CDS | 14413510 | 14413734 | 14413510 | ID=Msa0800830-mRNA-1:cds;Parent=Msa0800830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
