Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0801590 | XP_003612541.1 | 98.462 | 650 | 8 | 1 | 1 | 648 | 1 | 650 | 0.0 | 1341 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0801590 | sp|Q9FH80|BAM8_ARATH | 65.276 | 671 | 190 | 8 | 13 | 644 | 18 | 684 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0801590 | G7K5E9 | 98.462 | 650 | 8 | 1 | 1 | 648 | 1 | 650 | 0.0 | 1341 |
Gene ID | Type | Classification |
---|---|---|
Msa0801590 | TF | BES1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0801590 | MtrunA17_Chr5g0408851 | 98.462 | 650 | 8 | 1 | 1 | 648 | 1 | 650 | 0.0 | 1341 |
Msa0801590 | MtrunA17_Chr7g0247631 | 50.858 | 641 | 269 | 9 | 41 | 648 | 73 | 700 | 0.0 | 625 |
Msa0801590 | MtrunA17_Chr4g0023601 | 45.038 | 393 | 212 | 3 | 215 | 605 | 12 | 402 | 9.81e-128 | 386 |
Msa0801590 | MtrunA17_Chr2g0323051 | 41.609 | 435 | 245 | 4 | 215 | 642 | 85 | 517 | 1.14e-120 | 371 |
Msa0801590 | MtrunA17_Chr5g0399991 | 38.013 | 463 | 269 | 8 | 187 | 642 | 59 | 510 | 2.54e-103 | 324 |
Msa0801590 | MtrunA17_Chr4g0055281 | 36.832 | 505 | 303 | 10 | 137 | 635 | 4 | 498 | 1.35e-102 | 322 |
Msa0801590 | MtrunA17_Chr5g0400001 | 38.789 | 446 | 255 | 8 | 203 | 642 | 75 | 508 | 2.12e-102 | 322 |
Msa0801590 | MtrunA17_Chr6g0481031 | 39.487 | 390 | 229 | 6 | 216 | 600 | 106 | 493 | 5.44e-97 | 309 |
Msa0801590 | MtrunA17_Chr8g0388651 | 35.872 | 407 | 251 | 7 | 217 | 615 | 80 | 484 | 1.41e-72 | 244 |
Msa0801590 | MtrunA17_Chr2g0286431 | 35.372 | 376 | 231 | 7 | 216 | 586 | 83 | 451 | 1.28e-71 | 241 |
Msa0801590 | MtrunA17_Chr1g0154651 | 50.725 | 69 | 34 | 0 | 50 | 118 | 14 | 82 | 2.12e-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0801590 | AT5G45300.2 | 65.517 | 667 | 193 | 6 | 13 | 644 | 18 | 682 | 0.0 | 856 |
Msa0801590 | AT5G45300.3 | 65.276 | 671 | 190 | 8 | 13 | 644 | 32 | 698 | 0.0 | 854 |
Msa0801590 | AT5G45300.1 | 65.276 | 671 | 190 | 8 | 13 | 644 | 18 | 684 | 0.0 | 853 |
Msa0801590 | AT2G45880.1 | 49.843 | 636 | 278 | 9 | 41 | 647 | 59 | 682 | 0.0 | 634 |
Msa0801590 | AT4G00490.1 | 55.556 | 459 | 199 | 3 | 194 | 648 | 73 | 530 | 0.0 | 555 |
Msa0801590 | AT2G32290.1 | 44.091 | 440 | 238 | 5 | 209 | 642 | 71 | 508 | 3.45e-124 | 380 |
Msa0801590 | AT4G15210.2 | 43.511 | 393 | 217 | 4 | 215 | 604 | 13 | 403 | 3.26e-117 | 357 |
Msa0801590 | AT4G15210.1 | 42.543 | 409 | 225 | 5 | 215 | 615 | 13 | 419 | 9.63e-117 | 358 |
Msa0801590 | AT4G17090.1 | 40.698 | 430 | 245 | 8 | 216 | 640 | 86 | 510 | 5.79e-108 | 337 |
Msa0801590 | AT4G15210.3 | 42.663 | 368 | 202 | 4 | 255 | 615 | 1 | 366 | 7.54e-105 | 325 |
Msa0801590 | AT4G15210.4 | 42.663 | 368 | 202 | 4 | 255 | 615 | 1 | 366 | 7.54e-105 | 325 |
Msa0801590 | AT3G23920.1 | 39.007 | 423 | 245 | 8 | 216 | 627 | 106 | 526 | 6.86e-101 | 320 |
Msa0801590 | AT5G55700.1 | 33.667 | 499 | 301 | 12 | 132 | 615 | 21 | 504 | 4.16e-81 | 266 |
Msa0801590 | AT5G18670.1 | 32.767 | 412 | 260 | 8 | 216 | 624 | 87 | 484 | 1.82e-63 | 219 |
Msa0801590 | AT5G55700.2 | 37.942 | 311 | 180 | 6 | 316 | 615 | 33 | 341 | 6.64e-61 | 207 |
Find 186 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTGGTATTGGTGAGTTTC+AGG | 0.176787 | 5_3:-15640521 | Msa0801590:intron |
AACAACACCATCAATATTTA+AGG | 0.189592 | 5_3:+15641879 | None:intergenic |
CCGGTGATCAGGATCATTTC+TGG | 0.208369 | 5_3:+15637543 | None:intergenic |
CAATATTTAAGGACTTAATA+TGG | 0.231011 | 5_3:+15641890 | None:intergenic |
CTTATGCAAGATATTCATTC+TGG | 0.237659 | 5_3:-15642208 | Msa0801590:CDS |
ACCCAGACCACACATATTTC+TGG | 0.247785 | 5_3:+15641818 | None:intergenic |
TTCCCTCCCACAATGGGTTT+TGG | 0.258466 | 5_3:-15641079 | Msa0801590:CDS |
TCAGCAACCATCTTTGCTTC+AGG | 0.288355 | 5_3:-15637500 | Msa0801590:CDS |
AATATGTGTGGTCTGGGTAT+AGG | 0.294983 | 5_3:-15641813 | Msa0801590:CDS |
GGTGATTATGACAACTATTA+TGG | 0.299107 | 5_3:-15640238 | Msa0801590:CDS |
TCAAATTCTGAAGGTTGTTA+TGG | 0.309425 | 5_3:-15641145 | Msa0801590:intron |
TAAACGGCGGGGTTGTGGTT+GGG | 0.311332 | 5_3:+15643781 | None:intergenic |
GAAATTGGTCTGGGAGCATC+TGG | 0.323125 | 5_3:-15640589 | Msa0801590:CDS |
GTAAATTACACCCCACAAAA+TGG | 0.336732 | 5_3:+15637271 | None:intergenic |
GGCTTCGCCGCCACGGCAGC+GGG | 0.336954 | 5_3:-15643755 | Msa0801590:CDS |
GAACGAGGGTTGATCACTTC+TGG | 0.343467 | 5_3:-15637628 | Msa0801590:CDS |
CCAATGACTCATTAGCTTCC+TGG | 0.346299 | 5_3:+15637863 | None:intergenic |
ATTAAGTCCTTAAATATTGA+TGG | 0.349118 | 5_3:-15641886 | Msa0801590:CDS |
TTTGAGAACTTGTTCGGTTA+AGG | 0.350304 | 5_3:-15642776 | Msa0801590:CDS |
AAATGTTTGCCTGTCAGAAT+TGG | 0.351900 | 5_3:-15637476 | Msa0801590:CDS |
AAGCAGTCAGTTGAATTGAT+TGG | 0.355108 | 5_3:+15642634 | None:intergenic |
TGCAGGTTCCTGCCGTATAC+TGG | 0.362202 | 5_3:-15638032 | Msa0801590:intron |
ATATGTGTGGTCTGGGTATA+GGG | 0.362560 | 5_3:-15641812 | Msa0801590:CDS |
AGATGACAGGGAATCTTTAA+TGG | 0.364572 | 5_3:-15637319 | Msa0801590:exon |
GAAATACTGAATGCCTATCT+TGG | 0.365514 | 5_3:-15641005 | Msa0801590:CDS |
CGGAGCTGTGGTCGCTTTGT+GGG | 0.367932 | 5_3:+15643813 | None:intergenic |
AAATTATGTCGAGGTTGTTA+TGG | 0.369192 | 5_3:+15637124 | None:intergenic |
AAAAGGAACGAACGAAGCTC+CGG | 0.369830 | 5_3:-15643691 | Msa0801590:CDS |
TGTTGTTGTGGATTGTTGGT+GGG | 0.375591 | 5_3:-15641863 | Msa0801590:CDS |
GCTGCTCTCGCGCGTGAAGC+TGG | 0.375664 | 5_3:-15643569 | Msa0801590:CDS |
CTGCATGGTCTACTAAAGTC+TGG | 0.377028 | 5_3:+15640191 | None:intergenic |
TCGGAGCTGTGGTCGCTTTG+TGG | 0.379351 | 5_3:+15643812 | None:intergenic |
TTGTAGTGCCCAGCATTATC+AGG | 0.379757 | 5_3:+15640298 | None:intergenic |
AAACGGCGGGGTTGTGGTTG+GGG | 0.380739 | 5_3:+15643782 | None:intergenic |
TGACTGCTTGGAGGCTGATC+AGG | 0.381765 | 5_3:-15642620 | Msa0801590:intron |
ATGGTGTTGTTGTGGATTGT+TGG | 0.383484 | 5_3:-15641867 | Msa0801590:CDS |
AGCTCCTGCCTAATGCCTTC+AGG | 0.384829 | 5_3:+15641916 | None:intergenic |
ACCTGCCAACTCAGGCCATC+TGG | 0.386436 | 5_3:+15637835 | None:intergenic |
AAAAGAGTGACCGCGTAGTT+TGG | 0.391155 | 5_3:+15640333 | None:intergenic |
TGGATACTCTCCTGTGTTTG+AGG | 0.393796 | 5_3:-15637944 | Msa0801590:CDS |
TTCTTTAATTATTAAGATAG+AGG | 0.394296 | 5_3:-15637048 | Msa0801590:three_prime_UTR |
TTGATATGATGAGAAGCTTT+CGG | 0.394412 | 5_3:-15640657 | Msa0801590:CDS |
TCCCAGAAATATGTGTGGTC+TGG | 0.396705 | 5_3:-15641820 | Msa0801590:CDS |
ATGATTGATGCTGTAGAAAT+TGG | 0.397538 | 5_3:-15640604 | Msa0801590:CDS |
CTCTCGCGCGTGAAGCTGGT+TGG | 0.397545 | 5_3:-15643565 | Msa0801590:CDS |
AGCAGTCAGTTGAATTGATT+GGG | 0.398837 | 5_3:+15642635 | None:intergenic |
TGTTGGTGGGGCATTGTTGA+AGG | 0.399748 | 5_3:-15641850 | Msa0801590:CDS |
GTGTTGTTGTGGATTGTTGG+TGG | 0.402184 | 5_3:-15641864 | Msa0801590:CDS |
CGAGTTCTCAAAGGAAGAAC+TGG | 0.402924 | 5_3:-15640967 | Msa0801590:CDS |
AATGAAAAGTGCCGGTGATC+AGG | 0.403522 | 5_3:+15637532 | None:intergenic |
CGGTGATCAGGATCATTTCT+GGG | 0.406853 | 5_3:+15637544 | None:intergenic |
TGGCTTCGCCGCCACGGCAG+CGG | 0.408569 | 5_3:-15643756 | Msa0801590:CDS |
TCCTAAGCAGACAAATTTCA+TGG | 0.413620 | 5_3:+15637900 | None:intergenic |
CAGCAACCATCTTTGCTTCA+GGG | 0.418330 | 5_3:-15637499 | Msa0801590:CDS |
ATATCACAATCCCACAAATC+AGG | 0.419172 | 5_3:-15637968 | Msa0801590:CDS |
AAATACTGAATGCCTATCTT+GGG | 0.426849 | 5_3:-15641004 | Msa0801590:CDS |
CTTTGTCAATTCCCCAAGAT+AGG | 0.429608 | 5_3:+15640992 | None:intergenic |
TGATGGATCCTGAAGGCATT+AGG | 0.431606 | 5_3:-15641924 | Msa0801590:CDS |
GTTGTTGTGGATTGTTGGTG+GGG | 0.431988 | 5_3:-15641862 | Msa0801590:CDS |
TTACCTTGTTGTGGCTACAT+AGG | 0.433218 | 5_3:-15637252 | Msa0801590:three_prime_UTR |
TTTATGTAAACAGGAACATA+TGG | 0.433574 | 5_3:+15642157 | None:intergenic |
CCCAGACCACACATATTTCT+GGG | 0.437815 | 5_3:+15641819 | None:intergenic |
GGTGGGGCATTGTTGAAGGC+TGG | 0.439216 | 5_3:-15641846 | Msa0801590:CDS |
TAGCTCGACGGTGTCGTTCC+CGG | 0.439316 | 5_3:+15643672 | None:intergenic |
TGCCTTCAGGATCCATCAAC+TGG | 0.446486 | 5_3:+15641929 | None:intergenic |
GGGACAAATTCCACCGGAAA+AGG | 0.446606 | 5_3:-15643734 | Msa0801590:CDS |
CCAGGAAGCTAATGAGTCAT+TGG | 0.447793 | 5_3:-15637863 | Msa0801590:CDS |
ACATTTCCCTGAAGCAAAGA+TGG | 0.448478 | 5_3:+15637493 | None:intergenic |
AAAAGAGCGAGAGAAAGAAA+AGG | 0.450160 | 5_3:-15643708 | Msa0801590:CDS |
TACAGGTATTAAACTCAGCT+TGG | 0.451086 | 5_3:-15637651 | Msa0801590:intron |
CCCAGAAATATGTGTGGTCT+GGG | 0.451457 | 5_3:-15641819 | Msa0801590:CDS |
CAATCATACCTTCTGCAAAC+AGG | 0.452909 | 5_3:+15640620 | None:intergenic |
AACTCTATGCCACATGAGAC+TGG | 0.453839 | 5_3:-15640277 | Msa0801590:CDS |
AAGTCTATTGAAGTTGAAGT+TGG | 0.454770 | 5_3:-15636966 | Msa0801590:three_prime_UTR |
AATCAATTCAACTGACTGCT+TGG | 0.457237 | 5_3:-15642632 | Msa0801590:CDS |
TTGTGGTTGGGGTAAGTAAT+CGG | 0.458554 | 5_3:+15643793 | None:intergenic |
TGGTACTTTGAGAACTTGTT+CGG | 0.461516 | 5_3:-15642782 | Msa0801590:CDS |
AGTCTTGTACCACCAGTATA+CGG | 0.462042 | 5_3:+15638020 | None:intergenic |
CCACGTAAACGGCGGGGTTG+TGG | 0.464207 | 5_3:+15643776 | None:intergenic |
AGGATGGGGTGGAGGTATCC+TGG | 0.464484 | 5_3:-15640538 | Msa0801590:CDS |
ACCTTGCGGCAAATGATCCC+TGG | 0.465139 | 5_3:+15642827 | None:intergenic |
TTGTGTGGAAGTAGCATCTT+CGG | 0.468284 | 5_3:+15643844 | None:intergenic |
CCACCCCATCCTTTCTGAAA+AGG | 0.469410 | 5_3:+15640549 | None:intergenic |
TGGCGGCGAAGCCACGTAAA+CGG | 0.470461 | 5_3:+15643765 | None:intergenic |
AGAATTCAAGCTGAATATAC+AGG | 0.471133 | 5_3:-15641770 | Msa0801590:intron |
GTAAACGGCGGGGTTGTGGT+TGG | 0.472699 | 5_3:+15643780 | None:intergenic |
ATTGATTTCCCTCCCACAAT+GGG | 0.477212 | 5_3:-15641085 | Msa0801590:CDS |
TACCTTGTTGTGGCTACATA+GGG | 0.478784 | 5_3:-15637251 | Msa0801590:three_prime_UTR |
ACCATGAAATTTGTCTGCTT+AGG | 0.486759 | 5_3:-15637901 | Msa0801590:CDS |
GGCGAAGCCACGTAAACGGC+GGG | 0.486888 | 5_3:+15643769 | None:intergenic |
TTATGCAAGATATTCATTCT+GGG | 0.487754 | 5_3:-15642207 | Msa0801590:CDS |
TGCAATGTCTTCTGTAACAA+CGG | 0.488157 | 5_3:-15637189 | Msa0801590:three_prime_UTR |
GTATGGTAATTTCCCTCTCC+CGG | 0.489619 | 5_3:-15643618 | Msa0801590:CDS |
TTAGCTGGACTCCGTCAGTA+TGG | 0.494728 | 5_3:-15643635 | Msa0801590:CDS |
ATCCTTGCAGGAGAGATGAC+AGG | 0.495668 | 5_3:-15637332 | Msa0801590:intron |
CCAATATCCAAAACCCATTG+TGG | 0.501815 | 5_3:+15641072 | None:intergenic |
GCTAGAGGACCTGATAATGC+TGG | 0.501946 | 5_3:-15640307 | Msa0801590:CDS |
TGATGCTGTAGAAATTGGTC+TGG | 0.501988 | 5_3:-15640599 | Msa0801590:CDS |
TCATTAGCTTCCTGGTTGGA+AGG | 0.509262 | 5_3:+15637871 | None:intergenic |
ACAGGTATTAAACTCAGCTT+GGG | 0.509640 | 5_3:-15637650 | Msa0801590:intron |
ATATCAGCACGCGCCGGGAG+AGG | 0.510910 | 5_3:+15643605 | None:intergenic |
TTTCAGAAAGGATGGGGTGG+AGG | 0.511254 | 5_3:-15640546 | Msa0801590:CDS |
CAATATCCAAAACCCATTGT+GGG | 0.513279 | 5_3:+15641073 | None:intergenic |
CAATTCAACTGACTGCTTGG+AGG | 0.518795 | 5_3:-15642629 | Msa0801590:CDS |
TTCTTCATCAAATGCATGCA+TGG | 0.520174 | 5_3:-15637451 | Msa0801590:intron |
CCACAACCCCGCCGTTTACG+TGG | 0.522685 | 5_3:-15643776 | Msa0801590:CDS |
AAAGGAACGAACGAAGCTCC+GGG | 0.523828 | 5_3:-15643690 | Msa0801590:CDS |
GGGTGGAGGTATCCTGGTAT+TGG | 0.524209 | 5_3:-15640532 | Msa0801590:CDS |
GGGTGTAATTTACCTTGTTG+TGG | 0.525378 | 5_3:-15637261 | Msa0801590:three_prime_UTR |
CATTGATTTCCCTCCCACAA+TGG | 0.525805 | 5_3:-15641086 | Msa0801590:CDS |
TCAGTTGAAAGTCAACCATC+TGG | 0.528161 | 5_3:-15642805 | Msa0801590:CDS |
GCAGAAAGGGACTCAAAGAA+TGG | 0.530370 | 5_3:-15642676 | Msa0801590:CDS |
GAGTATCCATCCTGATTTGT+GGG | 0.533867 | 5_3:+15637958 | None:intergenic |
GGTTGGATTGTTGATGCTGA+TGG | 0.534130 | 5_3:-15643548 | Msa0801590:CDS |
CAAAGGAAGAACTGGAATTG+AGG | 0.535058 | 5_3:-15640959 | Msa0801590:intron |
AAAACAGAATCAATAGATGC+AGG | 0.538608 | 5_3:+15642703 | None:intergenic |
TCCAGATGGCCTGAGTTGGC+AGG | 0.543608 | 5_3:-15637836 | Msa0801590:intron |
CATTCATATCAGCACGCGCC+GGG | 0.544842 | 5_3:+15643600 | None:intergenic |
AAATATTGATGGTGTTGTTG+TGG | 0.545768 | 5_3:-15641875 | Msa0801590:CDS |
ATTTGTCCCCGCTGCCGTGG+CGG | 0.547154 | 5_3:+15643748 | None:intergenic |
GTTATGGCATTTCATGAATG+TGG | 0.548376 | 5_3:-15641129 | Msa0801590:CDS |
CTAAAATTACCTGCCAACTC+AGG | 0.548595 | 5_3:+15637827 | None:intergenic |
ATCACGAGTAGAATGTTAGC+TGG | 0.553331 | 5_3:-15643650 | Msa0801590:CDS |
GGATCCTGAAGGCATTAGGC+AGG | 0.553951 | 5_3:-15641920 | Msa0801590:CDS |
CCCATCCTTTCTGAAAAGGA+AGG | 0.556761 | 5_3:+15640553 | None:intergenic |
TATCAGCACGCGCCGGGAGA+GGG | 0.558304 | 5_3:+15643606 | None:intergenic |
TTTACGTGGCTTCGCCGCCA+CGG | 0.558514 | 5_3:-15643762 | Msa0801590:CDS |
AAACAAAGAATGAAAAGTGC+CGG | 0.559419 | 5_3:+15637524 | None:intergenic |
TTTGATGACCTGTTTGCAGA+AGG | 0.560533 | 5_3:-15640628 | Msa0801590:CDS |
GTCAATTCTGCTGCATGACT+AGG | 0.563214 | 5_3:+15637997 | None:intergenic |
AGAGTATCCATCCTGATTTG+TGG | 0.565198 | 5_3:+15637957 | None:intergenic |
TGCATGGTCTACTAAAGTCT+GGG | 0.566186 | 5_3:+15640192 | None:intergenic |
CATGCAGCAGAATTGACTGC+AGG | 0.566474 | 5_3:-15637991 | Msa0801590:CDS |
TCCAGGGATCATTTGCCGCA+AGG | 0.566747 | 5_3:-15642828 | Msa0801590:CDS |
TGAAGAAATCCAATTCTGAC+AGG | 0.567129 | 5_3:+15637467 | None:intergenic |
AACACTAGAGAATCAGTCAC+CGG | 0.572564 | 5_3:-15642752 | Msa0801590:CDS |
ATGGACGCTTCTTCTTACAT+TGG | 0.572612 | 5_3:-15640219 | Msa0801590:CDS |
TTGATCCAGATGGCCTGAGT+TGG | 0.574969 | 5_3:-15637840 | Msa0801590:CDS |
CTAGAGGACCTGATAATGCT+GGG | 0.581369 | 5_3:-15640306 | Msa0801590:CDS |
ACCTGAAACTCACCAATACC+AGG | 0.584300 | 5_3:+15640520 | None:intergenic |
CACAATCCCACAAATCAGGA+TGG | 0.585925 | 5_3:-15637964 | Msa0801590:CDS |
TTAAACTCAGCTTGGGAACG+AGG | 0.585944 | 5_3:-15637643 | Msa0801590:CDS |
GACAAAGAGCGAGTTCTCAA+AGG | 0.589070 | 5_3:-15640976 | Msa0801590:CDS |
TTGACTTTCAACTGACCTTG+CGG | 0.590564 | 5_3:+15642813 | None:intergenic |
GGAATTTGTCCCCGCTGCCG+TGG | 0.591731 | 5_3:+15643745 | None:intergenic |
TGGCATTTCATGAATGTGGA+GGG | 0.594149 | 5_3:-15641125 | Msa0801590:CDS |
GAGACAAAACATTATCTGCA+TGG | 0.594938 | 5_3:+15640176 | None:intergenic |
AGGATTTAATCCTTCCAACC+AGG | 0.595036 | 5_3:-15637881 | Msa0801590:CDS |
ATCCAAAACCCATTGTGGGA+GGG | 0.597274 | 5_3:+15641077 | None:intergenic |
AATTGGTCTGGGAGCATCTG+GGG | 0.601511 | 5_3:-15640587 | Msa0801590:CDS |
TTGTACCACCAGTATACGGC+AGG | 0.604078 | 5_3:+15638024 | None:intergenic |
TGACTCATTAGCTTCCTGGT+TGG | 0.607296 | 5_3:+15637867 | None:intergenic |
CCAGAAATGATCCTGATCAC+CGG | 0.607555 | 5_3:-15637543 | Msa0801590:CDS |
AGGAGGGAGACACTGGCGAT+AGG | 0.608162 | 5_3:+15643520 | None:intergenic |
TATCCAAAACCCATTGTGGG+AGG | 0.608960 | 5_3:+15641076 | None:intergenic |
GTACGAGAGATTGATTGAGA+TGG | 0.613489 | 5_3:-15637572 | Msa0801590:CDS |
TAAACTCAGCTTGGGAACGA+GGG | 0.616065 | 5_3:-15637642 | Msa0801590:CDS |
CATTCATCAACTCTAAGTCC+CGG | 0.620550 | 5_3:+15642733 | None:intergenic |
TATGCAAGATATTCATTCTG+GGG | 0.623010 | 5_3:-15642206 | Msa0801590:CDS |
CCATCCTTTCTGAAAAGGAA+GGG | 0.623214 | 5_3:+15640554 | None:intergenic |
AAATTGGTCTGGGAGCATCT+GGG | 0.623821 | 5_3:-15640588 | Msa0801590:CDS |
AAAGTTGTAAAATTATGTCG+AGG | 0.624306 | 5_3:+15637115 | None:intergenic |
GGGGTAAGTAATCGGAGCTG+TGG | 0.625072 | 5_3:+15643801 | None:intergenic |
TGCCAGTTGATGGATCCTGA+AGG | 0.625854 | 5_3:-15641931 | Msa0801590:CDS |
GATGCTGTAGAAATTGGTCT+GGG | 0.630924 | 5_3:-15640598 | Msa0801590:CDS |
TTGTGGGTCGAGATCTTGTG+TGG | 0.631123 | 5_3:+15643829 | None:intergenic |
GTCCCTATGTAGCCACAACA+AGG | 0.633615 | 5_3:+15637249 | None:intergenic |
TCCTTGCAGGAGAGATGACA+GGG | 0.635497 | 5_3:-15637331 | Msa0801590:intron |
GAGTCATTGGTTGATCCAGA+TGG | 0.635799 | 5_3:-15637850 | Msa0801590:CDS |
CGCAGAGCTGCCAAACTACG+CGG | 0.638467 | 5_3:-15640343 | Msa0801590:CDS |
AATACTGAATGCCTATCTTG+GGG | 0.642808 | 5_3:-15641003 | Msa0801590:CDS |
TCATTCATATCAGCACGCGC+CGG | 0.643548 | 5_3:+15643599 | None:intergenic |
GCAGCGGGGACAAATTCCAC+CGG | 0.648489 | 5_3:-15643740 | Msa0801590:CDS |
GGATATTGGAAAAGACAACC+AGG | 0.649948 | 5_3:-15641058 | Msa0801590:CDS |
CAAAAGAATCCAGTCTCATG+TGG | 0.650881 | 5_3:+15640268 | None:intergenic |
CGGCGAAGCCACGTAAACGG+CGG | 0.652629 | 5_3:+15643768 | None:intergenic |
GAGGGAAATTACCATACTGA+CGG | 0.656418 | 5_3:+15643624 | None:intergenic |
GCTTCGCCGCCACGGCAGCG+GGG | 0.660164 | 5_3:-15643754 | Msa0801590:CDS |
ACACTAGAGAATCAGTCACC+GGG | 0.668842 | 5_3:-15642751 | Msa0801590:CDS |
ATGGCATTTCATGAATGTGG+AGG | 0.669763 | 5_3:-15641126 | Msa0801590:CDS |
GTTCTCAAAGTACCACCAGA+TGG | 0.678737 | 5_3:+15642790 | None:intergenic |
TTCTACTCGTGATAGCTCGA+CGG | 0.680739 | 5_3:+15643660 | None:intergenic |
AGGTTCCTGCCGTATACTGG+TGG | 0.683068 | 5_3:-15638029 | Msa0801590:CDS |
GTTGAAAGTCAACCATCTGG+TGG | 0.685021 | 5_3:-15642802 | Msa0801590:CDS |
GGAACTCCCAGAAATATGTG+TGG | 0.702347 | 5_3:-15641825 | Msa0801590:CDS |
GCGAAGCCACGTAAACGGCG+GGG | 0.745366 | 5_3:+15643770 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGAAATATAAAAAGA+AGG | + | chr5_3:15637339-15637358 | None:intergenic | 10.0% |
!! | AATAAATTACAAATTTAGAT+GGG | + | chr5_3:15638581-15638600 | None:intergenic | 10.0% |
!! | AATAATAATAAACTTGAAAA+AGG | - | chr5_3:15641234-15641253 | Msa0801590:intron | 10.0% |
!!! | AAGAATTATTTTGTATTATT+AGG | + | chr5_3:15641529-15641548 | None:intergenic | 10.0% |
!!! | ATGTAATATATTTTCATTAA+TGG | - | chr5_3:15642431-15642450 | Msa0801590:intron | 10.0% |
!!! | AAATTAAGTTGTTAAAAATG+CGG | + | chr5_3:15637432-15637451 | None:intergenic | 15.0% |
!!! | TTTTTTATTTTGGTCTTAAT+CGG | - | chr5_3:15637717-15637736 | Msa0801590:intron | 15.0% |
!! | CAATAAATTACAAATTTAGA+TGG | + | chr5_3:15638582-15638601 | None:intergenic | 15.0% |
!! | GTAATAGAAAATAAATGATT+TGG | + | chr5_3:15639205-15639224 | None:intergenic | 15.0% |
!! | AATAGTTTAAGAACTTTATA+GGG | + | chr5_3:15639273-15639292 | None:intergenic | 15.0% |
!! | TAATAGTTTAAGAACTTTAT+AGG | + | chr5_3:15639274-15639293 | None:intergenic | 15.0% |
!! | TTATATTCTATATGTTTGTA+AGG | - | chr5_3:15640386-15640405 | Msa0801590:intron | 15.0% |
!!! | AAAAATTTGGTTTCAAAAAA+AGG | - | chr5_3:15640918-15640937 | Msa0801590:intron | 15.0% |
!!! | TAATATCTTATTTACTTTTG+TGG | - | chr5_3:15641330-15641349 | Msa0801590:intron | 15.0% |
!!! | TAGTTAGTAATAATTTGTTT+CGG | - | chr5_3:15641825-15641844 | Msa0801590:CDS | 15.0% |
!!! | TAGTTAGTAATAATTTGTTT+CGG | - | chr5_3:15641825-15641844 | Msa0801590:CDS | 15.0% |
!! | AAATAAAATAAATACCTGTT+TGG | + | chr5_3:15642519-15642538 | None:intergenic | 15.0% |
!!! | TAAAAATAGTTTCTAAAAAC+TGG | - | chr5_3:15642545-15642564 | Msa0801590:intron | 15.0% |
!! | TTCTTTAATTATTAAGATAG+AGG | - | chr5_3:15643768-15643787 | Msa0801590:CDS | 15.0% |
!!! | TCACTTTATATCTTTTGTTA+TGG | + | chr5_3:15637508-15637527 | None:intergenic | 20.0% |
!!! | TTGCTTAGAGTTTTTTATTT+TGG | - | chr5_3:15637707-15637726 | Msa0801590:intron | 20.0% |
!!! | TTTTTATTTTGGTCTTAATC+GGG | - | chr5_3:15637718-15637737 | Msa0801590:intron | 20.0% |
!! | AAATCAATATGTTGAAATGT+TGG | - | chr5_3:15637900-15637919 | Msa0801590:CDS | 20.0% |
!! | AATCAATATGTTGAAATGTT+GGG | - | chr5_3:15637901-15637920 | Msa0801590:CDS | 20.0% |
!! | TTAGTGTTTATGTTTGATTA+AGG | - | chr5_3:15637957-15637976 | Msa0801590:CDS | 20.0% |
!! | AGTTTATGTTGATATGATAT+CGG | - | chr5_3:15638329-15638348 | Msa0801590:intron | 20.0% |
!! | GAAAAAAAAATTGTACTTAC+AGG | - | chr5_3:15638755-15638774 | Msa0801590:intron | 20.0% |
!! | CAATATTTAAGGACTTAATA+TGG | + | chr5_3:15638929-15638948 | None:intergenic | 20.0% |
!! | ATTAAGTCCTTAAATATTGA+TGG | - | chr5_3:15638930-15638949 | Msa0801590:intron | 20.0% |
!!! | AGATAAATTTTCCATTTTGA+AGG | + | chr5_3:15639119-15639138 | None:intergenic | 20.0% |
!! | TATGATACATGATGATTAAT+AGG | - | chr5_3:15639174-15639193 | Msa0801590:intron | 20.0% |
!! | ATGATACATGATGATTAATA+GGG | - | chr5_3:15639175-15639194 | Msa0801590:intron | 20.0% |
!!! | CTTTAAAATATGTTTTGAAG+AGG | - | chr5_3:15639612-15639631 | Msa0801590:intron | 20.0% |
!!! | ATTTGTTTCTTGTTTGTATA+TGG | - | chr5_3:15640011-15640030 | Msa0801590:intron | 20.0% |
!!! | TATATCAATTTTTCATGTTG+TGG | - | chr5_3:15640717-15640736 | Msa0801590:intron | 20.0% |
!! | ATTAGCATTTATTCTATGAA+TGG | + | chr5_3:15640891-15640910 | None:intergenic | 20.0% |
!! | ATTCATAGAATAAATGCTAA+TGG | - | chr5_3:15640890-15640909 | Msa0801590:intron | 20.0% |
!!! | AAAGTTTTAACGATACAATT+TGG | - | chr5_3:15641442-15641461 | Msa0801590:intron | 20.0% |
!!! | TTCTTTTTAATATCTTAACG+TGG | - | chr5_3:15641782-15641801 | Msa0801590:CDS | 20.0% |
!!! | TTTCTGTTAGAATTTCTTTT+TGG | - | chr5_3:15641873-15641892 | Msa0801590:CDS | 20.0% |
!!! | TTCTGTTAGAATTTCTTTTT+GGG | - | chr5_3:15641874-15641893 | Msa0801590:CDS | 20.0% |
!!! | TTCTTTTTAATATCTTAACG+TGG | - | chr5_3:15641782-15641801 | Msa0801590:CDS | 20.0% |
!!! | TTTCTGTTAGAATTTCTTTT+TGG | - | chr5_3:15641873-15641892 | Msa0801590:CDS | 20.0% |
!!! | TTCTGTTAGAATTTCTTTTT+GGG | - | chr5_3:15641874-15641893 | Msa0801590:CDS | 20.0% |
!!! | TGAAAATTCTAAAACTTGTT+TGG | - | chr5_3:15642010-15642029 | Msa0801590:intron | 20.0% |
!! | TAAAAATAAGATTACCAAAC+AGG | - | chr5_3:15642502-15642521 | Msa0801590:intron | 20.0% |
!! | AAGAGTTTATGATTAAACTT+GGG | + | chr5_3:15642621-15642640 | None:intergenic | 20.0% |
!! | AAAGAGTTTATGATTAAACT+TGG | + | chr5_3:15642622-15642641 | None:intergenic | 20.0% |
!!! | AGTATTAACATTTTAACGTT+AGG | - | chr5_3:15642657-15642676 | Msa0801590:CDS | 20.0% |
!!! | TTTGAAATAACTTGTATGAT+GGG | - | chr5_3:15643032-15643051 | Msa0801590:intron | 20.0% |
!!! | ATTACATATTTTGATCAACT+TGG | - | chr5_3:15643101-15643120 | Msa0801590:intron | 20.0% |
!! | TTGTTAAAAAGTAAGATTTG+CGG | + | chr5_3:15643523-15643542 | None:intergenic | 20.0% |
!! | TATTTTCATAAACTCTCGAA+TGG | + | chr5_3:15637561-15637580 | None:intergenic | 25.0% |
! | TTATGAAAATAAGCTGAACA+CGG | - | chr5_3:15637570-15637589 | Msa0801590:CDS | 25.0% |
! | TCTAAGCAATAACTAACTAA+GGG | + | chr5_3:15637696-15637715 | None:intergenic | 25.0% |
!!! | TTTTATTTTGGTCTTAATCG+GGG | - | chr5_3:15637719-15637738 | Msa0801590:intron | 25.0% |
!!! | TAACGCATTTTAGTTAAGTT+CGG | + | chr5_3:15637820-15637839 | None:intergenic | 25.0% |
!!! | TGATTAAGGTTTTATTATCC+AGG | - | chr5_3:15637971-15637990 | Msa0801590:CDS | 25.0% |
!!! | GATTAAGGTTTTATTATCCA+GGG | - | chr5_3:15637972-15637991 | Msa0801590:CDS | 25.0% |
!!! | ATTCTGTTTTAATTGCAGAA+AGG | - | chr5_3:15638126-15638145 | Msa0801590:intron | 25.0% |
!!! | TTCTGTTTTAATTGCAGAAA+GGG | - | chr5_3:15638127-15638146 | Msa0801590:intron | 25.0% |
! | GCGTGTTTAAATTTATAATG+TGG | - | chr5_3:15638532-15638551 | Msa0801590:intron | 25.0% |
! | TTATGCAAGATATTCATTCT+GGG | - | chr5_3:15638609-15638628 | Msa0801590:intron | 25.0% |
! | TTTATGTAAACAGGAACATA+TGG | + | chr5_3:15638662-15638681 | None:intergenic | 25.0% |
! | ATAAATATGAGACACTTACT+GGG | + | chr5_3:15638688-15638707 | None:intergenic | 25.0% |
! | AATAAATATGAGACACTTAC+TGG | + | chr5_3:15638689-15638708 | None:intergenic | 25.0% |
!!! | TTTTCTAGAACTTTTTACAC+AGG | + | chr5_3:15638740-15638759 | None:intergenic | 25.0% |
!!! | TAAAATTAGCCTTTTATTGC+AGG | - | chr5_3:15638842-15638861 | Msa0801590:intron | 25.0% |
! | AACAACACCATCAATATTTA+AGG | + | chr5_3:15638940-15638959 | None:intergenic | 25.0% |
!!! | AAATTTTCCATTTTGAAGGA+TGG | + | chr5_3:15639115-15639134 | None:intergenic | 25.0% |
! | TAAACTATTACACTACATGA+AGG | - | chr5_3:15639284-15639303 | Msa0801590:intron | 25.0% |
! | GGTATGTAAACATAAATAAC+AGG | + | chr5_3:15639950-15639969 | None:intergenic | 25.0% |
!!! | TAATGCAACTGTTTTGAAAT+GGG | + | chr5_3:15640338-15640357 | None:intergenic | 25.0% |
!!! | ATAATGCAACTGTTTTGAAA+TGG | + | chr5_3:15640339-15640358 | None:intergenic | 25.0% |
! | CTTATAACTGTGACTAAATT+TGG | - | chr5_3:15640746-15640765 | Msa0801590:intron | 25.0% |
! | TTGCATTCATAATTGATAGA+TGG | - | chr5_3:15640795-15640814 | Msa0801590:intron | 25.0% |
! | AGTAAATGCCTCATATTAAA+GGG | + | chr5_3:15640845-15640864 | None:intergenic | 25.0% |
! | TAGTAAATGCCTCATATTAA+AGG | + | chr5_3:15640846-15640865 | None:intergenic | 25.0% |
! | GCTAATGGTGTATAAAAATT+TGG | - | chr5_3:15640905-15640924 | Msa0801590:intron | 25.0% |
!! | AACTATAATTACGACTCTTT+TGG | + | chr5_3:15641123-15641142 | None:intergenic | 25.0% |
!! | AAAGGAAGAGAAACTTTTAT+GGG | + | chr5_3:15641385-15641404 | None:intergenic | 25.0% |
!! | TAAAGGAAGAGAAACTTTTA+TGG | + | chr5_3:15641386-15641405 | None:intergenic | 25.0% |
! | ATTTAGGGGTAAAAACTTAA+AGG | + | chr5_3:15641403-15641422 | None:intergenic | 25.0% |
! | TAAAATGGGATGAAAAATCA+AGG | + | chr5_3:15641480-15641499 | None:intergenic | 25.0% |
!! | TGATTTTTCATCCCATTTTA+AGG | - | chr5_3:15641480-15641499 | Msa0801590:intron | 25.0% |
!! | GATTTTTCATCCCATTTTAA+GGG | - | chr5_3:15641481-15641500 | Msa0801590:intron | 25.0% |
!! | ATTTTTCATCCCATTTTAAG+GGG | - | chr5_3:15641482-15641501 | Msa0801590:intron | 25.0% |
! | TACAAAATAATTCTTGCTTG+TGG | - | chr5_3:15641534-15641553 | Msa0801590:intron | 25.0% |
! | GCATAATACAATAACTTTGA+CGG | + | chr5_3:15641587-15641606 | None:intergenic | 25.0% |
! | TAGTTTAATGTAACAACCAA+GGG | + | chr5_3:15641751-15641770 | None:intergenic | 25.0% |
! | TTAGTTTAATGTAACAACCA+AGG | + | chr5_3:15641752-15641771 | None:intergenic | 25.0% |
!! | TCTGTTAGAATTTCTTTTTG+GGG | - | chr5_3:15641875-15641894 | Msa0801590:CDS | 25.0% |
! | TTTAACTATTCAATGCAGAA+AGG | - | chr5_3:15641929-15641948 | Msa0801590:CDS | 25.0% |
! | TTTCAAAAACAGAATCAAAC+AGG | + | chr5_3:15641967-15641986 | None:intergenic | 25.0% |
!! | TCTGTTAGAATTTCTTTTTG+GGG | - | chr5_3:15641875-15641894 | Msa0801590:CDS | 25.0% |
! | TTTAACTATTCAATGCAGAA+AGG | - | chr5_3:15641929-15641948 | Msa0801590:CDS | 25.0% |
! | TTTCAAAAACAGAATCAAAC+AGG | + | chr5_3:15641967-15641986 | None:intergenic | 25.0% |
!!! | GGAAACAGTTTTTAAAAAGT+AGG | + | chr5_3:15642309-15642328 | None:intergenic | 25.0% |
!! | GCAAAACATAAAACAGTTTT+GGG | + | chr5_3:15642330-15642349 | None:intergenic | 25.0% |
!! | AGCAAAACATAAAACAGTTT+TGG | + | chr5_3:15642331-15642350 | None:intergenic | 25.0% |
! | AGTTTCCAAAACTAAAAACA+CGG | - | chr5_3:15642406-15642425 | Msa0801590:intron | 25.0% |
!!! | ATGGCATTTTAGTAAATAAG+TGG | - | chr5_3:15642450-15642469 | Msa0801590:intron | 25.0% |
! | AGAGTTTATGATTAAACTTG+GGG | + | chr5_3:15642620-15642639 | None:intergenic | 25.0% |
! | ATTCATTAAGTTTAGAGACA+AGG | + | chr5_3:15642758-15642777 | None:intergenic | 25.0% |
!!! | CTTTGAAATAACTTGTATGA+TGG | - | chr5_3:15643031-15643050 | Msa0801590:intron | 25.0% |
! | ATAGATCAAAGTGAATTCTA+AGG | + | chr5_3:15643400-15643419 | None:intergenic | 25.0% |
!!! | GCAAATCTTACTTTTTAACA+AGG | - | chr5_3:15643522-15643541 | Msa0801590:intron | 25.0% |
! | AAAGTTGTAAAATTATGTCG+AGG | + | chr5_3:15643704-15643723 | None:intergenic | 25.0% |
!!! | CGATCCTTTTTTTGATAATA+AGG | - | chr5_3:15643740-15643759 | Msa0801590:CDS | 25.0% |
! | CGAACCTTATTATCAAAAAA+AGG | + | chr5_3:15643747-15643766 | None:intergenic | 25.0% |
TGATGATTACTTCTGATTGA+AGG | - | chr5_3:15637358-15637377 | Msa0801590:intron | 30.0% | |
TCAAATAAGCCAATCCAAAT+AGG | - | chr5_3:15637670-15637689 | Msa0801590:intron | 30.0% | |
CTCTAAGCAATAACTAACTA+AGG | + | chr5_3:15637697-15637716 | None:intergenic | 30.0% | |
!! | CTTATTTTCGAATCAATCAC+TGG | + | chr5_3:15637749-15637768 | None:intergenic | 30.0% |
CTGAACTACTTGATTTAGTT+GGG | - | chr5_3:15637850-15637869 | Msa0801590:CDS | 30.0% | |
TGAACTACTTGATTTAGTTG+GGG | - | chr5_3:15637851-15637870 | Msa0801590:CDS | 30.0% | |
AATATGTTGAAATGTTGGGT+TGG | - | chr5_3:15637905-15637924 | Msa0801590:CDS | 30.0% | |
ATATGTTGAAATGTTGGGTT+GGG | - | chr5_3:15637906-15637925 | Msa0801590:CDS | 30.0% | |
AAAACAGAATCAATAGATGC+AGG | + | chr5_3:15638116-15638135 | None:intergenic | 30.0% | |
CATAAACTAGAAAAACAGTG+AGG | + | chr5_3:15638317-15638336 | None:intergenic | 30.0% | |
! | GGTGTGTATTGATATACTAT+TGG | - | chr5_3:15638398-15638417 | Msa0801590:intron | 30.0% |
TGAAATAAGCTTCATGCAAT+TGG | + | chr5_3:15638484-15638503 | None:intergenic | 30.0% | |
TAAATTTAAACACGCCACTT+GGG | + | chr5_3:15638527-15638546 | None:intergenic | 30.0% | |
ATAAATTTAAACACGCCACT+TGG | + | chr5_3:15638528-15638547 | None:intergenic | 30.0% | |
CTTATGCAAGATATTCATTC+TGG | - | chr5_3:15638608-15638627 | Msa0801590:intron | 30.0% | |
TATGCAAGATATTCATTCTG+GGG | - | chr5_3:15638610-15638629 | Msa0801590:intron | 30.0% | |
!! | TTTGACTTGTATTTGATCAC+AGG | - | chr5_3:15638814-15638833 | Msa0801590:intron | 30.0% |
!! | TTGACTTGTATTTGATCACA+GGG | - | chr5_3:15638815-15638834 | Msa0801590:intron | 30.0% |
! | TAACAAATTTTGCCAGTTGA+TGG | - | chr5_3:15638875-15638894 | Msa0801590:intron | 30.0% |
!! | AAATATTGATGGTGTTGTTG+TGG | - | chr5_3:15638941-15638960 | Msa0801590:intron | 30.0% |
AGAATTCAAGCTGAATATAC+AGG | - | chr5_3:15639046-15639065 | Msa0801590:intron | 30.0% | |
!! | TATTACAAGAGTGTCATTTC+TGG | - | chr5_3:15639219-15639238 | Msa0801590:intron | 30.0% |
AGTTTAAGAACTTTATAGGG+AGG | + | chr5_3:15639270-15639289 | None:intergenic | 30.0% | |
TAAAGATGCTTTCCAATTAG+AGG | + | chr5_3:15639597-15639616 | None:intergenic | 30.0% | |
AGAATTTGAAGAGTCAAGAT+AGG | + | chr5_3:15639660-15639679 | None:intergenic | 30.0% | |
! | TCAAATTCTGAAGGTTGTTA+TGG | - | chr5_3:15639671-15639690 | Msa0801590:intron | 30.0% |
! | ATATTTTTCACAGATCGTGA+AGG | - | chr5_3:15639783-15639802 | Msa0801590:intron | 30.0% |
AAATACTGAATGCCTATCTT+GGG | - | chr5_3:15639812-15639831 | Msa0801590:intron | 30.0% | |
TATCTGCATTTCATCTGAAA+GGG | - | chr5_3:15639981-15640000 | Msa0801590:intron | 30.0% | |
TTGATATGATGAGAAGCTTT+CGG | - | chr5_3:15640159-15640178 | Msa0801590:CDS | 30.0% | |
ATGATTGATGCTGTAGAAAT+TGG | - | chr5_3:15640212-15640231 | Msa0801590:CDS | 30.0% | |
!!! | AATGCAACTGTTTTGAAATG+GGG | + | chr5_3:15640337-15640356 | None:intergenic | 30.0% |
GGTGATTATGACAACTATTA+TGG | - | chr5_3:15640578-15640597 | Msa0801590:CDS | 30.0% | |
GGGAACAAAAATTATTGTCA+AGG | - | chr5_3:15640682-15640701 | Msa0801590:intron | 30.0% | |
! | TATTGTCAAGGTAGTTTTTC+TGG | - | chr5_3:15640694-15640713 | Msa0801590:intron | 30.0% |
TCAAAAATCAAGAGAAGCTA+TGG | - | chr5_3:15641053-15641072 | Msa0801590:CDS | 30.0% | |
TAAATGTCCAAGTTGTATGA+TGG | - | chr5_3:15641078-15641097 | Msa0801590:CDS | 30.0% | |
GCAAGATATTCAAATCTTGT+TGG | - | chr5_3:15641150-15641169 | Msa0801590:intron | 30.0% | |
! | TATTCAAATCTTGTTGGTGA+AGG | - | chr5_3:15641156-15641175 | Msa0801590:intron | 30.0% |
TACAACCTTAGTTTCACATA+TGG | - | chr5_3:15641260-15641279 | Msa0801590:intron | 30.0% | |
ACAACCTTAGTTTCACATAT+GGG | - | chr5_3:15641261-15641280 | Msa0801590:intron | 30.0% | |
! | CAAGTCTATGTTTGATTTAG+GGG | + | chr5_3:15641417-15641436 | None:intergenic | 30.0% |
! | CCAAGTCTATGTTTGATTTA+GGG | + | chr5_3:15641418-15641437 | None:intergenic | 30.0% |
GTTCAATATCCCCTTAAAAT+GGG | + | chr5_3:15641494-15641513 | None:intergenic | 30.0% | |
AGTTCAATATCCCCTTAAAA+TGG | + | chr5_3:15641495-15641514 | None:intergenic | 30.0% | |
AGTTATTGTATTATGCAGTG+TGG | - | chr5_3:15641591-15641610 | Msa0801590:intron | 30.0% | |
AGTTGAGAAAAGGGTAAATT+TGG | - | chr5_3:15641617-15641636 | Msa0801590:intron | 30.0% | |
GTTGAGAAAAGGGTAAATTT+GGG | - | chr5_3:15641618-15641637 | Msa0801590:intron | 30.0% | |
AGTTTAATGTAACAACCAAG+GGG | + | chr5_3:15641750-15641769 | None:intergenic | 30.0% | |
CTAACTATGATTCCAGATAA+AGG | + | chr5_3:15641812-15641831 | None:intergenic | 30.0% | |
AATGCAGAAAGGACAAATTA+AGG | - | chr5_3:15641940-15641959 | Msa0801590:CDS | 30.0% | |
ATGCAGAAAGGACAAATTAA+GGG | - | chr5_3:15641941-15641960 | Msa0801590:CDS | 30.0% | |
CTAACTATGATTCCAGATAA+AGG | + | chr5_3:15641812-15641831 | None:intergenic | 30.0% | |
AATGCAGAAAGGACAAATTA+AGG | - | chr5_3:15641940-15641959 | Msa0801590:CDS | 30.0% | |
ATGCAGAAAGGACAAATTAA+GGG | - | chr5_3:15641941-15641960 | Msa0801590:CDS | 30.0% | |
!!! | GTGTTTTTAGTTTTGGAAAC+TGG | + | chr5_3:15642407-15642426 | None:intergenic | 30.0% |
!!! | CATTTCCGTGTTTTTAGTTT+TGG | + | chr5_3:15642414-15642433 | None:intergenic | 30.0% |
!! | GCAGGATATGTATTTTTAAG+TGG | + | chr5_3:15642700-15642719 | None:intergenic | 30.0% |
! | GTTATTTCAAAGCTGGATTA+AGG | + | chr5_3:15643023-15643042 | None:intergenic | 30.0% |
! | CATACAAGTTATTTCAAAGC+TGG | + | chr5_3:15643030-15643049 | None:intergenic | 30.0% |
! | TTTCATCCATTTGTTACGAA+TGG | - | chr5_3:15643136-15643155 | Msa0801590:intron | 30.0% |
!! | TCTTTTGCTATGATAGAGAA+AGG | - | chr5_3:15643222-15643241 | Msa0801590:intron | 30.0% |
! | AAACAAAGAATGAAAAGTGC+CGG | + | chr5_3:15643295-15643314 | None:intergenic | 30.0% |
! | TTAAAGCTTTTTATCCTTGC+AGG | - | chr5_3:15643472-15643491 | Msa0801590:intron | 30.0% |
!! | TTTTTAACAAGGCCATTTTG+TGG | - | chr5_3:15643533-15643552 | Msa0801590:CDS | 30.0% |
!! | TTTTAACAAGGCCATTTTGT+GGG | - | chr5_3:15643534-15643553 | Msa0801590:CDS | 30.0% |
AAATTATGTCGAGGTTGTTA+TGG | + | chr5_3:15643695-15643714 | None:intergenic | 30.0% | |
AAGTCTATTGAAGTTGAAGT+TGG | - | chr5_3:15643850-15643869 | Msa0801590:CDS | 30.0% | |
!!! | TCGCTCTTTTTTTCCTTTTC+CGG | + | chr5_3:15637098-15637117 | None:intergenic | 35.0% |
AAAAGAGCGAGAGAAAGAAA+AGG | - | chr5_3:15637108-15637127 | Msa0801590:three_prime_UTR | 35.0% | |
TAACTAACTAAGGGCCTATT+TGG | + | chr5_3:15637687-15637706 | None:intergenic | 35.0% | |
TTAGTTAAGTTCGGATAGCT+TGG | + | chr5_3:15637811-15637830 | None:intergenic | 35.0% | |
GCTGAACTACTTGATTTAGT+TGG | - | chr5_3:15637849-15637868 | Msa0801590:CDS | 35.0% | |
! | TGGTACTTTGAGAACTTGTT+CGG | - | chr5_3:15638034-15638053 | Msa0801590:intron | 35.0% |
! | TTTGAGAACTTGTTCGGTTA+AGG | - | chr5_3:15638040-15638059 | Msa0801590:intron | 35.0% |
AGCAGTCAGTTGAATTGATT+GGG | + | chr5_3:15638184-15638203 | None:intergenic | 35.0% | |
AAGCAGTCAGTTGAATTGAT+TGG | + | chr5_3:15638185-15638204 | None:intergenic | 35.0% | |
AATCAATTCAACTGACTGCT+TGG | - | chr5_3:15638184-15638203 | Msa0801590:intron | 35.0% | |
!! | GTTAGTGTTTTTAACCCAAG+TGG | - | chr5_3:15638510-15638529 | Msa0801590:intron | 35.0% |
!! | ACTGGGAGTTTTATGTAAAC+AGG | + | chr5_3:15638671-15638690 | None:intergenic | 35.0% |
! | CTAGAACTTTTTACACAGGT+TGG | + | chr5_3:15638736-15638755 | None:intergenic | 35.0% |
AACAGAGTTAAAGCCTCAAA+AGG | + | chr5_3:15638796-15638815 | None:intergenic | 35.0% | |
TAATACCAGCCTGCAATAAA+AGG | + | chr5_3:15638854-15638873 | None:intergenic | 35.0% | |
GGATGCATGTATAACATGAT+AGG | + | chr5_3:15639094-15639113 | None:intergenic | 35.0% | |
ACTACATGAAGGACTGAATA+GGG | - | chr5_3:15639295-15639314 | Msa0801590:intron | 35.0% | |
ATAAGATTGTTTCCCTAGCT+TGG | - | chr5_3:15639423-15639442 | Msa0801590:intron | 35.0% | |
TTCACATACTATCCAAGCTA+GGG | + | chr5_3:15639438-15639457 | None:intergenic | 35.0% | |
TTTCACATACTATCCAAGCT+AGG | + | chr5_3:15639439-15639458 | None:intergenic | 35.0% | |
CTTGACTCTTCAAATTCTGA+AGG | - | chr5_3:15639662-15639681 | Msa0801590:intron | 35.0% | |
GTTATGGCATTTCATGAATG+TGG | - | chr5_3:15639687-15639706 | Msa0801590:intron | 35.0% | |
CAATATCCAAAACCCATTGT+GGG | + | chr5_3:15639746-15639765 | None:intergenic | 35.0% | |
GATCTGTGAAAAATATGTCC+TGG | + | chr5_3:15639779-15639798 | None:intergenic | 35.0% | |
GAAATACTGAATGCCTATCT+TGG | - | chr5_3:15639811-15639830 | Msa0801590:intron | 35.0% | |
AATACTGAATGCCTATCTTG+GGG | - | chr5_3:15639813-15639832 | Msa0801590:intron | 35.0% | |
AATGCAGATACACTGGAAAT+TGG | + | chr5_3:15639971-15639990 | None:intergenic | 35.0% | |
GTATCTGCATTTCATCTGAA+AGG | - | chr5_3:15639980-15639999 | Msa0801590:intron | 35.0% | |
TAGCCTTCTGCATTATATAC+AGG | - | chr5_3:15640130-15640149 | Msa0801590:intron | 35.0% | |
AGACCTGTATATAATGCAGA+AGG | + | chr5_3:15640136-15640155 | None:intergenic | 35.0% | |
! | AATACCCTTCCTTTTCAGAA+AGG | - | chr5_3:15640258-15640277 | Msa0801590:CDS | 35.0% |
GAGACAAAACATTATCTGCA+TGG | + | chr5_3:15640643-15640662 | None:intergenic | 35.0% | |
! | TTTTTGTTCCCTCAAAAGCA+AGG | + | chr5_3:15640673-15640692 | None:intergenic | 35.0% |
TTGGTATGCCCTTTAATATG+AGG | - | chr5_3:15640834-15640853 | Msa0801590:intron | 35.0% | |
GAAAATGCCATCATACAACT+TGG | + | chr5_3:15641088-15641107 | None:intergenic | 35.0% | |
CAACCTTAGTTTCACATATG+GGG | - | chr5_3:15641262-15641281 | Msa0801590:intron | 35.0% | |
TTACCCCATATGTGAAACTA+AGG | + | chr5_3:15641268-15641287 | None:intergenic | 35.0% | |
ATGGGGTAAAATTCAATCTC+CGG | - | chr5_3:15641279-15641298 | Msa0801590:intron | 35.0% | |
CCCTAAATCAAACATAGACT+TGG | - | chr5_3:15641415-15641434 | Msa0801590:intron | 35.0% | |
! | GCCAAGTCTATGTTTGATTT+AGG | + | chr5_3:15641419-15641438 | None:intergenic | 35.0% |
AGTGTGGTTTAGTTGAGAAA+AGG | - | chr5_3:15641607-15641626 | Msa0801590:intron | 35.0% | |
GTGTGGTTTAGTTGAGAAAA+GGG | - | chr5_3:15641608-15641627 | Msa0801590:intron | 35.0% | |
CTATCTACAATAGACCCAAA+TGG | + | chr5_3:15641687-15641706 | None:intergenic | 35.0% | |
AAGTTTGAGTCGTGAATCAA+AGG | + | chr5_3:15641715-15641734 | None:intergenic | 35.0% | |
TAACGTGGTAATCCTTTATC+TGG | - | chr5_3:15641797-15641816 | Msa0801590:CDS | 35.0% | |
TAACGTGGTAATCCTTTATC+TGG | - | chr5_3:15641797-15641816 | Msa0801590:CDS | 35.0% | |
AACTGAAAACGCAATCAAAC+AGG | - | chr5_3:15642594-15642613 | Msa0801590:intron | 35.0% | |
!! | CATTTTAACGTTAGGATGCA+TGG | - | chr5_3:15642665-15642684 | Msa0801590:CDS | 35.0% |
! | ATGCTTTTACTTTCAATGGC+AGG | + | chr5_3:15642718-15642737 | None:intergenic | 35.0% |
! | TGGCATGCTTTTACTTTCAA+TGG | + | chr5_3:15642722-15642741 | None:intergenic | 35.0% |
GACAAGGATACAACTTCATT+TGG | + | chr5_3:15642742-15642761 | None:intergenic | 35.0% | |
ACTTAATGAATAAACGCTGC+AGG | - | chr5_3:15642767-15642786 | Msa0801590:CDS | 35.0% | |
ATATCACAATCCCACAAATC+AGG | - | chr5_3:15642848-15642867 | Msa0801590:intron | 35.0% | |
!! | TTTTTCAGAACCTCAAACAC+AGG | + | chr5_3:15642885-15642904 | None:intergenic | 35.0% |
ACCATGAAATTTGTCTGCTT+AGG | - | chr5_3:15642915-15642934 | Msa0801590:intron | 35.0% | |
TCCTAAGCAGACAAATTTCA+TGG | + | chr5_3:15642919-15642938 | None:intergenic | 35.0% | |
ATTTCAAAGCTGGATTAAGG+TGG | + | chr5_3:15643020-15643039 | None:intergenic | 35.0% | |
CAAATGGATGAAAACATGCA+TGG | + | chr5_3:15643129-15643148 | None:intergenic | 35.0% | |
CAATCACCATTCGTAACAAA+TGG | + | chr5_3:15643145-15643164 | None:intergenic | 35.0% | |
TACAGGTATTAAACTCAGCT+TGG | - | chr5_3:15643165-15643184 | Msa0801590:intron | 35.0% | |
ACAGGTATTAAACTCAGCTT+GGG | - | chr5_3:15643166-15643185 | Msa0801590:intron | 35.0% | |
AAATGTTTGCCTGTCAGAAT+TGG | - | chr5_3:15643340-15643359 | Msa0801590:intron | 35.0% | |
TGAAGAAATCCAATTCTGAC+AGG | + | chr5_3:15643352-15643371 | None:intergenic | 35.0% | |
TTCTTCATCAAATGCATGCA+TGG | - | chr5_3:15643365-15643384 | Msa0801590:intron | 35.0% | |
AGATGACAGGGAATCTTTAA+TGG | - | chr5_3:15643497-15643516 | Msa0801590:intron | 35.0% | |
!! | TTTAACAAGGCCATTTTGTG+GGG | - | chr5_3:15643535-15643554 | Msa0801590:CDS | 35.0% |
GTAAATTACACCCCACAAAA+TGG | + | chr5_3:15643548-15643567 | None:intergenic | 35.0% | |
TGCAATGTCTTCTGTAACAA+CGG | - | chr5_3:15643627-15643646 | Msa0801590:CDS | 35.0% | |
TTGTGTGGAAGTAGCATCTT+CGG | + | chr5_3:15636975-15636994 | None:intergenic | 40.0% | |
TTGTGGTTGGGGTAAGTAAT+CGG | + | chr5_3:15637026-15637045 | None:intergenic | 40.0% | |
!!! | CTCTTTTTTTCCTTTTCCGG+TGG | + | chr5_3:15637095-15637114 | None:intergenic | 40.0% |
ATCACGAGTAGAATGTTAGC+TGG | - | chr5_3:15637166-15637185 | Msa0801590:three_prime_UTR | 40.0% | |
GAGGGAAATTACCATACTGA+CGG | + | chr5_3:15637195-15637214 | None:intergenic | 40.0% | |
AAGAAGGAAAGCAACCATGT+TGG | + | chr5_3:15637323-15637342 | None:intergenic | 40.0% | |
! | TTAAAAATGCGGTGCTAGGT+AGG | + | chr5_3:15637421-15637440 | None:intergenic | 40.0% |
GTTGTTAAAAATGCGGTGCT+AGG | + | chr5_3:15637425-15637444 | None:intergenic | 40.0% | |
AACTAAGGGCCTATTTGGAT+TGG | + | chr5_3:15637682-15637701 | None:intergenic | 40.0% | |
TTGACTTTCAACTGACCTTG+CGG | + | chr5_3:15638006-15638025 | None:intergenic | 40.0% | |
TCAGTTGAAAGTCAACCATC+TGG | - | chr5_3:15638011-15638030 | Msa0801590:CDS | 40.0% | |
AACACTAGAGAATCAGTCAC+CGG | - | chr5_3:15638064-15638083 | Msa0801590:intron | 40.0% | |
CATTCATCAACTCTAAGTCC+CGG | + | chr5_3:15638086-15638105 | None:intergenic | 40.0% | |
CTCAGCATAATCAGATTCTC+TGG | - | chr5_3:15638372-15638391 | Msa0801590:intron | 40.0% | |
CATAATCAGATTCTCTGGTC+TGG | - | chr5_3:15638377-15638396 | Msa0801590:intron | 40.0% | |
!! | ATGCAATTGGTTCGCAACTT+TGG | + | chr5_3:15638471-15638490 | None:intergenic | 40.0% |
ATGTCGAGAAGTGATTGAAC+AGG | - | chr5_3:15638555-15638574 | Msa0801590:intron | 40.0% | |
!!! | ATTAGCCTTTTATTGCAGGC+TGG | - | chr5_3:15638846-15638865 | Msa0801590:intron | 40.0% |
!! | ATGGTGTTGTTGTGGATTGT+TGG | - | chr5_3:15638949-15638968 | Msa0801590:intron | 40.0% |
! | TGTTGTTGTGGATTGTTGGT+GGG | - | chr5_3:15638953-15638972 | Msa0801590:intron | 40.0% |
AATATGTGTGGTCTGGGTAT+AGG | - | chr5_3:15639003-15639022 | Msa0801590:intron | 40.0% | |
ATATGTGTGGTCTGGGTATA+GGG | - | chr5_3:15639004-15639023 | Msa0801590:intron | 40.0% | |
CATGCATCCATCCTTCAAAA+TGG | - | chr5_3:15639105-15639124 | Msa0801590:intron | 40.0% | |
!! | CAAGAGTGTCATTTCTGGTT+AGG | - | chr5_3:15639224-15639243 | Msa0801590:intron | 40.0% |
CACTACATGAAGGACTGAAT+AGG | - | chr5_3:15639294-15639313 | Msa0801590:intron | 40.0% | |
AATAGGGAACACAGAGAATG+TGG | - | chr5_3:15639311-15639330 | Msa0801590:intron | 40.0% | |
ATGGCATTTCATGAATGTGG+AGG | - | chr5_3:15639690-15639709 | Msa0801590:intron | 40.0% | |
TGGCATTTCATGAATGTGGA+GGG | - | chr5_3:15639691-15639710 | Msa0801590:intron | 40.0% | |
! | ATTGATTTCCCTCCCACAAT+GGG | - | chr5_3:15639731-15639750 | Msa0801590:intron | 40.0% |
CCAATATCCAAAACCCATTG+TGG | + | chr5_3:15639747-15639766 | None:intergenic | 40.0% | |
!!! | CCACAATGGGTTTTGGATAT+TGG | - | chr5_3:15639744-15639763 | Msa0801590:intron | 40.0% |
GGATATTGGAAAAGACAACC+AGG | - | chr5_3:15639758-15639777 | Msa0801590:intron | 40.0% | |
! | TTTTCACAGATCGTGAAGGA+CGG | - | chr5_3:15639787-15639806 | Msa0801590:intron | 40.0% |
CTTTGTCAATTCCCCAAGAT+AGG | + | chr5_3:15639827-15639846 | None:intergenic | 40.0% | |
CAAAGGAAGAACTGGAATTG+AGG | - | chr5_3:15639857-15639876 | Msa0801590:intron | 40.0% | |
CAGATGAAATGCAGATACAC+TGG | + | chr5_3:15639978-15639997 | None:intergenic | 40.0% | |
! | TTTGATGACCTGTTTGCAGA+AGG | - | chr5_3:15640188-15640207 | Msa0801590:CDS | 40.0% |
CAATCATACCTTCTGCAAAC+AGG | + | chr5_3:15640199-15640218 | None:intergenic | 40.0% | |
TGATGCTGTAGAAATTGGTC+TGG | - | chr5_3:15640217-15640236 | Msa0801590:CDS | 40.0% | |
! | GATGCTGTAGAAATTGGTCT+GGG | - | chr5_3:15640218-15640237 | Msa0801590:CDS | 40.0% |
! | CCATCCTTTCTGAAAAGGAA+GGG | + | chr5_3:15640265-15640284 | None:intergenic | 40.0% |
! | CCTTCCTTTTCAGAAAGGAT+GGG | - | chr5_3:15640263-15640282 | Msa0801590:CDS | 40.0% |
! | CTTCCTTTTCAGAAAGGATG+GGG | - | chr5_3:15640264-15640283 | Msa0801590:CDS | 40.0% |
!! | TTTCAGGTACCTCGTTCTTT+TGG | - | chr5_3:15640311-15640330 | Msa0801590:CDS | 40.0% |
CAAAAGAATCCAGTCTCATG+TGG | + | chr5_3:15640551-15640570 | None:intergenic | 40.0% | |
ATGGACGCTTCTTCTTACAT+TGG | - | chr5_3:15640597-15640616 | Msa0801590:CDS | 40.0% | |
TGCATGGTCTACTAAAGTCT+GGG | + | chr5_3:15640627-15640646 | None:intergenic | 40.0% | |
!! | TCTTGCAAACCTTGCTTTTG+AGG | - | chr5_3:15640661-15640680 | Msa0801590:CDS | 40.0% |
!! | CTTGCAAACCTTGCTTTTGA+GGG | - | chr5_3:15640662-15640681 | Msa0801590:CDS | 40.0% |
TGGTACCTATAGAGTCAGTT+TGG | - | chr5_3:15640815-15640834 | Msa0801590:intron | 40.0% | |
! | GCATACCAAACTGACTCTAT+AGG | + | chr5_3:15640823-15640842 | None:intergenic | 40.0% |
GGAAACCAGGAAGAAAACAA+AGG | - | chr5_3:15641192-15641211 | Msa0801590:intron | 40.0% | |
AACCAGGAAGAAAACAAAGG+AGG | - | chr5_3:15641195-15641214 | Msa0801590:intron | 40.0% | |
!!! | TTCTTTTTGGGGTTGTGTAC+AGG | - | chr5_3:15641886-15641905 | Msa0801590:CDS | 40.0% |
CAGGTATGAGATCAGAAATC+AGG | - | chr5_3:15641905-15641924 | Msa0801590:CDS | 40.0% | |
!!! | TTCTTTTTGGGGTTGTGTAC+AGG | - | chr5_3:15641886-15641905 | Msa0801590:CDS | 40.0% |
CAGGTATGAGATCAGAAATC+AGG | - | chr5_3:15641905-15641924 | Msa0801590:CDS | 40.0% | |
! | AGTCTTGTACCACCAGTATA+CGG | + | chr5_3:15642799-15642818 | None:intergenic | 40.0% |
! | GAGTATCCATCCTGATTTGT+GGG | + | chr5_3:15642861-15642880 | None:intergenic | 40.0% |
! | AGAGTATCCATCCTGATTTG+TGG | + | chr5_3:15642862-15642881 | None:intergenic | 40.0% |
AGGATTTAATCCTTCCAACC+AGG | - | chr5_3:15642935-15642954 | Msa0801590:intron | 40.0% | |
CTAAAATTACCTGCCAACTC+AGG | + | chr5_3:15642992-15643011 | None:intergenic | 40.0% | |
!! | AACTTGTATGATGGGTGAAG+TGG | - | chr5_3:15643040-15643059 | Msa0801590:intron | 40.0% |
GTTACGAATGGTGATTGTAC+AGG | - | chr5_3:15643148-15643167 | Msa0801590:intron | 40.0% | |
GTACGAGAGATTGATTGAGA+TGG | - | chr5_3:15643244-15643263 | Msa0801590:intron | 40.0% | |
ACATTTCCCTGAAGCAAAGA+TGG | + | chr5_3:15643326-15643345 | None:intergenic | 40.0% | |
GGGTGTAATTTACCTTGTTG+TGG | - | chr5_3:15643555-15643574 | Msa0801590:CDS | 40.0% | |
! | TTACCTTGTTGTGGCTACAT+AGG | - | chr5_3:15643564-15643583 | Msa0801590:CDS | 40.0% |
! | TACCTTGTTGTGGCTACATA+GGG | - | chr5_3:15643565-15643584 | Msa0801590:CDS | 40.0% |
AAAAGGAACGAACGAAGCTC+CGG | - | chr5_3:15637125-15637144 | Msa0801590:three_prime_UTR | 45.0% | |
TTCTACTCGTGATAGCTCGA+CGG | + | chr5_3:15637159-15637178 | None:intergenic | 45.0% | |
GTATGGTAATTTCCCTCTCC+CGG | - | chr5_3:15637198-15637217 | Msa0801590:three_prime_UTR | 45.0% | |
GGTTGGATTGTTGATGCTGA+TGG | - | chr5_3:15637268-15637287 | Msa0801590:three_prime_UTR | 45.0% | |
AAGCAACCATGTTGGAAGGA+GGG | + | chr5_3:15637315-15637334 | None:intergenic | 45.0% | |
AAAGCAACCATGTTGGAAGG+AGG | + | chr5_3:15637316-15637335 | None:intergenic | 45.0% | |
AGGAAAGCAACCATGTTGGA+AGG | + | chr5_3:15637319-15637338 | None:intergenic | 45.0% | |
CACTTGTGAGACTGTTTGAG+AGG | + | chr5_3:15637629-15637648 | None:intergenic | 45.0% | |
GTTGAAAGTCAACCATCTGG+TGG | - | chr5_3:15638014-15638033 | Msa0801590:CDS | 45.0% | |
! | GTTCTCAAAGTACCACCAGA+TGG | + | chr5_3:15638029-15638048 | None:intergenic | 45.0% |
ACACTAGAGAATCAGTCACC+GGG | - | chr5_3:15638065-15638084 | Msa0801590:intron | 45.0% | |
GCAGAAAGGGACTCAAAGAA+TGG | - | chr5_3:15638140-15638159 | Msa0801590:intron | 45.0% | |
CAATTCAACTGACTGCTTGG+AGG | - | chr5_3:15638187-15638206 | Msa0801590:intron | 45.0% | |
! | TCACTTAGCGTGTCCTTTTG+AGG | - | chr5_3:15638780-15638799 | Msa0801590:intron | 45.0% |
!! | TGATGGATCCTGAAGGCATT+AGG | - | chr5_3:15638892-15638911 | Msa0801590:intron | 45.0% |
! | GTGTTGTTGTGGATTGTTGG+TGG | - | chr5_3:15638952-15638971 | Msa0801590:intron | 45.0% |
! | GTTGTTGTGGATTGTTGGTG+GGG | - | chr5_3:15638954-15638973 | Msa0801590:intron | 45.0% |
GGAACTCCCAGAAATATGTG+TGG | - | chr5_3:15638991-15639010 | Msa0801590:intron | 45.0% | |
TCCCAGAAATATGTGTGGTC+TGG | - | chr5_3:15638996-15639015 | Msa0801590:intron | 45.0% | |
CCCAGACCACACATATTTCT+GGG | + | chr5_3:15639000-15639019 | None:intergenic | 45.0% | |
CCCAGAAATATGTGTGGTCT+GGG | - | chr5_3:15638997-15639016 | Msa0801590:intron | 45.0% | |
ACCCAGACCACACATATTTC+TGG | + | chr5_3:15639001-15639020 | None:intergenic | 45.0% | |
ACAGAGAATGTGGCGAAGTA+CGG | - | chr5_3:15639321-15639340 | Msa0801590:intron | 45.0% | |
!! | CATTGATTTCCCTCCCACAA+TGG | - | chr5_3:15639730-15639749 | Msa0801590:intron | 45.0% |
ATCCAAAACCCATTGTGGGA+GGG | + | chr5_3:15639742-15639761 | None:intergenic | 45.0% | |
TATCCAAAACCCATTGTGGG+AGG | + | chr5_3:15639743-15639762 | None:intergenic | 45.0% | |
GACAAAGAGCGAGTTCTCAA+AGG | - | chr5_3:15639840-15639859 | Msa0801590:intron | 45.0% | |
CGAGTTCTCAAAGGAAGAAC+TGG | - | chr5_3:15639849-15639868 | Msa0801590:intron | 45.0% | |
!! | AAATTGGTCTGGGAGCATCT+GGG | - | chr5_3:15640228-15640247 | Msa0801590:CDS | 45.0% |
! | CCCTTCCTTTTCAGAAAGGA+TGG | - | chr5_3:15640262-15640281 | Msa0801590:CDS | 45.0% |
! | CCCATCCTTTCTGAAAAGGA+AGG | + | chr5_3:15640266-15640285 | None:intergenic | 45.0% |
!! | TCCTGGTATTGGTGAGTTTC+AGG | - | chr5_3:15640295-15640314 | Msa0801590:CDS | 45.0% |
ACCTGAAACTCACCAATACC+AGG | + | chr5_3:15640299-15640318 | None:intergenic | 45.0% | |
AAAAGAGTGACCGCGTAGTT+TGG | + | chr5_3:15640486-15640505 | None:intergenic | 45.0% | |
! | AACTACGCGGTCACTCTTTT+TGG | - | chr5_3:15640486-15640505 | Msa0801590:intron | 45.0% |
! | ACTACGCGGTCACTCTTTTT+GGG | - | chr5_3:15640487-15640506 | Msa0801590:intron | 45.0% |
! | CTAGAGGACCTGATAATGCT+GGG | - | chr5_3:15640510-15640529 | Msa0801590:intron | 45.0% |
TTGTAGTGCCCAGCATTATC+AGG | + | chr5_3:15640521-15640540 | None:intergenic | 45.0% | |
AACTCTATGCCACATGAGAC+TGG | - | chr5_3:15640539-15640558 | Msa0801590:CDS | 45.0% | |
! | ACTGGATTCTTTTGTGAGCG+AGG | - | chr5_3:15640557-15640576 | Msa0801590:CDS | 45.0% |
CTGCATGGTCTACTAAAGTC+TGG | + | chr5_3:15640628-15640647 | None:intergenic | 45.0% | |
TGGATGATGTTAGTTGCTGC+TGG | - | chr5_3:15640766-15640785 | Msa0801590:intron | 45.0% | |
ATTGCAAGAGACTGGAAACC+AGG | - | chr5_3:15641179-15641198 | Msa0801590:intron | 45.0% | |
!!! | CACCTCCTTTGTTTTCTTCC+TGG | + | chr5_3:15641200-15641219 | None:intergenic | 45.0% |
GAGTAGCGTTCATCTTCTTC+CGG | + | chr5_3:15641301-15641320 | None:intergenic | 45.0% | |
TCCTACCATAGCGTGGTTAA+CGG | - | chr5_3:15641650-15641669 | Msa0801590:intron | 45.0% | |
!! | ACGGAAGTGTTGGATCCATT+TGG | - | chr5_3:15641669-15641688 | Msa0801590:intron | 45.0% |
!! | CGGAAGTGTTGGATCCATTT+GGG | - | chr5_3:15641670-15641689 | Msa0801590:intron | 45.0% |
ACGACTCAAACTTGTGACTG+AGG | - | chr5_3:15641722-15641741 | Msa0801590:intron | 45.0% | |
GTCAATTCTGCTGCATGACT+AGG | + | chr5_3:15642822-15642841 | None:intergenic | 45.0% | |
CACAATCCCACAAATCAGGA+TGG | - | chr5_3:15642852-15642871 | Msa0801590:intron | 45.0% | |
TGGATACTCTCCTGTGTTTG+AGG | - | chr5_3:15642872-15642891 | Msa0801590:intron | 45.0% | |
! | TCATTAGCTTCCTGGTTGGA+AGG | + | chr5_3:15642948-15642967 | None:intergenic | 45.0% |
! | TGACTCATTAGCTTCCTGGT+TGG | + | chr5_3:15642952-15642971 | None:intergenic | 45.0% |
! | CCAATGACTCATTAGCTTCC+TGG | + | chr5_3:15642956-15642975 | None:intergenic | 45.0% |
CCAGGAAGCTAATGAGTCAT+TGG | - | chr5_3:15642953-15642972 | Msa0801590:intron | 45.0% | |
! | GAGTCATTGGTTGATCCAGA+TGG | - | chr5_3:15642966-15642985 | Msa0801590:intron | 45.0% |
TTAAACTCAGCTTGGGAACG+AGG | - | chr5_3:15643173-15643192 | Msa0801590:intron | 45.0% | |
TAAACTCAGCTTGGGAACGA+GGG | - | chr5_3:15643174-15643193 | Msa0801590:intron | 45.0% | |
CGGTGATCAGGATCATTTCT+GGG | + | chr5_3:15643275-15643294 | None:intergenic | 45.0% | |
CCAGAAATGATCCTGATCAC+CGG | - | chr5_3:15643273-15643292 | Msa0801590:intron | 45.0% | |
!! | AATGAAAAGTGCCGGTGATC+AGG | + | chr5_3:15643287-15643306 | None:intergenic | 45.0% |
TCAGCAACCATCTTTGCTTC+AGG | - | chr5_3:15643316-15643335 | Msa0801590:intron | 45.0% | |
CAGCAACCATCTTTGCTTCA+GGG | - | chr5_3:15643317-15643336 | Msa0801590:intron | 45.0% | |
TTGTGGGTCGAGATCTTGTG+TGG | + | chr5_3:15636990-15637009 | None:intergenic | 50.0% | |
GGGACAAATTCCACCGGAAA+AGG | - | chr5_3:15637082-15637101 | Msa0801590:three_prime_UTR | 50.0% | |
AAAGGAACGAACGAAGCTCC+GGG | - | chr5_3:15637126-15637145 | Msa0801590:three_prime_UTR | 50.0% | |
TTAGCTGGACTCCGTCAGTA+TGG | - | chr5_3:15637181-15637200 | Msa0801590:three_prime_UTR | 50.0% | |
TCATTCATATCAGCACGCGC+CGG | + | chr5_3:15637220-15637239 | None:intergenic | 50.0% | |
! | CTTCTGATTGAAGGCGTGTC+CGG | - | chr5_3:15637367-15637386 | Msa0801590:intron | 50.0% |
! | GAAAGCACGAACACAGACAC+CGG | + | chr5_3:15637389-15637408 | None:intergenic | 50.0% |
! | GGAGGCTGATCAGGTGATTT+TGG | - | chr5_3:15638205-15638224 | Msa0801590:intron | 50.0% |
!! | TGCCAGTTGATGGATCCTGA+AGG | - | chr5_3:15638885-15638904 | Msa0801590:intron | 50.0% |
TGCCTTCAGGATCCATCAAC+TGG | + | chr5_3:15638890-15638909 | None:intergenic | 50.0% | |
!! | TGTTGGTGGGGCATTGTTGA+AGG | - | chr5_3:15638966-15638985 | Msa0801590:intron | 50.0% |
AGAATGTGGCGAAGTACGGA+GGG | - | chr5_3:15639325-15639344 | Msa0801590:intron | 50.0% | |
!! | TTCCCTCCCACAATGGGTTT+TGG | - | chr5_3:15639737-15639756 | Msa0801590:intron | 50.0% |
!! | GAAATTGGTCTGGGAGCATC+TGG | - | chr5_3:15640227-15640246 | Msa0801590:CDS | 50.0% |
!! | AATTGGTCTGGGAGCATCTG+GGG | - | chr5_3:15640229-15640248 | Msa0801590:CDS | 50.0% |
! | CCACCCCATCCTTTCTGAAA+AGG | + | chr5_3:15640270-15640289 | None:intergenic | 50.0% |
! | CCTTTTCAGAAAGGATGGGG+TGG | - | chr5_3:15640267-15640286 | Msa0801590:CDS | 50.0% |
TTTCAGAAAGGATGGGGTGG+AGG | - | chr5_3:15640270-15640289 | Msa0801590:CDS | 50.0% | |
GAAATGGGGCCAAAAGAACG+AGG | + | chr5_3:15640323-15640342 | None:intergenic | 50.0% | |
!! | GGTCACTCTTTTTGGGCTAG+AGG | - | chr5_3:15640494-15640513 | Msa0801590:intron | 50.0% |
! | GCTAGAGGACCTGATAATGC+TGG | - | chr5_3:15640509-15640528 | Msa0801590:intron | 50.0% |
GGTGAAGGATTGCAAGAGAC+TGG | - | chr5_3:15641171-15641190 | Msa0801590:intron | 50.0% | |
ACAAAGCTCCTACCATAGCG+TGG | - | chr5_3:15641643-15641662 | Msa0801590:intron | 50.0% | |
TCCGTTAACCACGCTATGGT+AGG | + | chr5_3:15641654-15641673 | None:intergenic | 50.0% | |
CACTTCCGTTAACCACGCTA+TGG | + | chr5_3:15641658-15641677 | None:intergenic | 50.0% | |
! | AGCGTGGTTAACGGAAGTGT+TGG | - | chr5_3:15641659-15641678 | Msa0801590:intron | 50.0% |
TTGTACCACCAGTATACGGC+AGG | + | chr5_3:15642795-15642814 | None:intergenic | 50.0% | |
CATGCAGCAGAATTGACTGC+AGG | - | chr5_3:15642825-15642844 | Msa0801590:CDS | 50.0% | |
TTGATCCAGATGGCCTGAGT+TGG | - | chr5_3:15642976-15642995 | Msa0801590:intron | 50.0% | |
! | GAACGAGGGTTGATCACTTC+TGG | - | chr5_3:15643188-15643207 | Msa0801590:intron | 50.0% |
CCGGTGATCAGGATCATTTC+TGG | + | chr5_3:15643276-15643295 | None:intergenic | 50.0% | |
ATCCTTGCAGGAGAGATGAC+AGG | - | chr5_3:15643484-15643503 | Msa0801590:intron | 50.0% | |
TCCTTGCAGGAGAGATGACA+GGG | - | chr5_3:15643485-15643504 | Msa0801590:intron | 50.0% | |
GTCCCTATGTAGCCACAACA+AGG | + | chr5_3:15643570-15643589 | None:intergenic | 50.0% | |
GGGGTAAGTAATCGGAGCTG+TGG | + | chr5_3:15637018-15637037 | None:intergenic | 55.0% | |
TAAACGGCGGGGTTGTGGTT+GGG | + | chr5_3:15637038-15637057 | None:intergenic | 55.0% | |
CATTCATATCAGCACGCGCC+GGG | + | chr5_3:15637219-15637238 | None:intergenic | 55.0% | |
TGTTGGAAGGAGGGAGACAC+TGG | + | chr5_3:15637306-15637325 | None:intergenic | 55.0% | |
GTGTCTCCCTCCTTCCAACA+TGG | - | chr5_3:15637306-15637325 | Msa0801590:exon | 55.0% | |
TCCAGGGATCATTTGCCGCA+AGG | - | chr5_3:15637988-15638007 | Msa0801590:CDS | 55.0% | |
ACCTTGCGGCAAATGATCCC+TGG | + | chr5_3:15637992-15638011 | None:intergenic | 55.0% | |
TGACTGCTTGGAGGCTGATC+AGG | - | chr5_3:15638196-15638215 | Msa0801590:intron | 55.0% | |
!! | GGATCCTGAAGGCATTAGGC+AGG | - | chr5_3:15638896-15638915 | Msa0801590:intron | 55.0% |
AGCTCCTGCCTAATGCCTTC+AGG | + | chr5_3:15638903-15638922 | None:intergenic | 55.0% | |
GAGAATGTGGCGAAGTACGG+AGG | - | chr5_3:15639324-15639343 | Msa0801590:intron | 55.0% | |
AGTACGGAGGGCAAACGTAG+TGG | - | chr5_3:15639337-15639356 | Msa0801590:intron | 55.0% | |
!! | GGGTGGAGGTATCCTGGTAT+TGG | - | chr5_3:15640284-15640303 | Msa0801590:CDS | 55.0% |
CTTGTGACTGAGGTTCCCCT+TGG | - | chr5_3:15641732-15641751 | Msa0801590:intron | 55.0% | |
TGCAGGTTCCTGCCGTATAC+TGG | - | chr5_3:15642784-15642803 | Msa0801590:CDS | 55.0% | |
AGGTTCCTGCCGTATACTGG+TGG | - | chr5_3:15642787-15642806 | Msa0801590:CDS | 55.0% | |
TCCCTGTCATCTCTCCTGCA+AGG | + | chr5_3:15643489-15643508 | None:intergenic | 55.0% | |
! | CGGAGCTGTGGTCGCTTTGT+GGG | + | chr5_3:15637006-15637025 | None:intergenic | 60.0% |
! | TCGGAGCTGTGGTCGCTTTG+TGG | + | chr5_3:15637007-15637026 | None:intergenic | 60.0% |
AAACGGCGGGGTTGTGGTTG+GGG | + | chr5_3:15637037-15637056 | None:intergenic | 60.0% | |
GTAAACGGCGGGGTTGTGGT+TGG | + | chr5_3:15637039-15637058 | None:intergenic | 60.0% | |
TGGCGGCGAAGCCACGTAAA+CGG | + | chr5_3:15637054-15637073 | None:intergenic | 60.0% | |
TTTACGTGGCTTCGCCGCCA+CGG | - | chr5_3:15637054-15637073 | Msa0801590:three_prime_UTR | 60.0% | |
GCAGCGGGGACAAATTCCAC+CGG | - | chr5_3:15637076-15637095 | Msa0801590:three_prime_UTR | 60.0% | |
!! | TAGCTCGACGGTGTCGTTCC+CGG | + | chr5_3:15637147-15637166 | None:intergenic | 60.0% |
AGGAGGGAGACACTGGCGAT+AGG | + | chr5_3:15637299-15637318 | None:intergenic | 60.0% | |
!! | GGTGGGGCATTGTTGAAGGC+TGG | - | chr5_3:15638970-15638989 | Msa0801590:intron | 60.0% |
CGGAGGGCAAACGTAGTGGT+TGG | - | chr5_3:15639341-15639360 | Msa0801590:intron | 60.0% | |
!! | AGGATGGGGTGGAGGTATCC+TGG | - | chr5_3:15640278-15640297 | Msa0801590:CDS | 60.0% |
CGCAGAGCTGCCAAACTACG+CGG | - | chr5_3:15640473-15640492 | Msa0801590:intron | 60.0% | |
! | TCCAGATGGCCTGAGTTGGC+AGG | - | chr5_3:15642980-15642999 | Msa0801590:intron | 60.0% |
ACCTGCCAACTCAGGCCATC+TGG | + | chr5_3:15642984-15643003 | None:intergenic | 60.0% | |
CCACGTAAACGGCGGGGTTG+TGG | + | chr5_3:15637043-15637062 | None:intergenic | 65.0% | |
CCACAACCCCGCCGTTTACG+TGG | - | chr5_3:15637040-15637059 | Msa0801590:three_prime_UTR | 65.0% | |
GCGAAGCCACGTAAACGGCG+GGG | + | chr5_3:15637049-15637068 | None:intergenic | 65.0% | |
GGCGAAGCCACGTAAACGGC+GGG | + | chr5_3:15637050-15637069 | None:intergenic | 65.0% | |
CGGCGAAGCCACGTAAACGG+CGG | + | chr5_3:15637051-15637070 | None:intergenic | 65.0% | |
ATTTGTCCCCGCTGCCGTGG+CGG | + | chr5_3:15637071-15637090 | None:intergenic | 65.0% | |
GGAATTTGTCCCCGCTGCCG+TGG | + | chr5_3:15637074-15637093 | None:intergenic | 65.0% | |
TATCAGCACGCGCCGGGAGA+GGG | + | chr5_3:15637213-15637232 | None:intergenic | 65.0% | |
ATATCAGCACGCGCCGGGAG+AGG | + | chr5_3:15637214-15637233 | None:intergenic | 65.0% | |
CTCTCGCGCGTGAAGCTGGT+TGG | - | chr5_3:15637251-15637270 | Msa0801590:three_prime_UTR | 65.0% | |
GCTGCTCTCGCGCGTGAAGC+TGG | - | chr5_3:15637247-15637266 | Msa0801590:three_prime_UTR | 70.0% | |
TGGCTTCGCCGCCACGGCAG+CGG | - | chr5_3:15637060-15637079 | Msa0801590:three_prime_UTR | 75.0% | |
! | GGCTTCGCCGCCACGGCAGC+GGG | - | chr5_3:15637061-15637080 | Msa0801590:three_prime_UTR | 80.0% |
! | GCTTCGCCGCCACGGCAGCG+GGG | - | chr5_3:15637062-15637081 | Msa0801590:three_prime_UTR | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 15636959 | 15643879 | 15636959 | ID=Msa0801590;Name=Msa0801590 |
chr5_3 | mRNA | 15636959 | 15643879 | 15636959 | ID=Msa0801590-mRNA-1;Parent=Msa0801590;Name=Msa0801590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.88|0.8|1|1|1|10|363|648 |
chr5_3 | exon | 15636959 | 15637344 | 15636959 | ID=Msa0801590-mRNA-1:exon:6489;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15637452 | 15637668 | 15637452 | ID=Msa0801590-mRNA-1:exon:6488;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15637837 | 15638049 | 15637837 | ID=Msa0801590-mRNA-1:exon:6487;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15640135 | 15640395 | 15640135 | ID=Msa0801590-mRNA-1:exon:6486;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15640522 | 15640686 | 15640522 | ID=Msa0801590-mRNA-1:exon:6485;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15640960 | 15641154 | 15640960 | ID=Msa0801590-mRNA-1:exon:6484;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15641771 | 15641974 | 15641771 | ID=Msa0801590-mRNA-1:exon:6483;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15642150 | 15642230 | 15642150 | ID=Msa0801590-mRNA-1:exon:6482;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15642621 | 15642859 | 15642621 | ID=Msa0801590-mRNA-1:exon:6481;Parent=Msa0801590-mRNA-1 |
chr5_3 | exon | 15643531 | 15643879 | 15643531 | ID=Msa0801590-mRNA-1:exon:6480;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15643531 | 15643879 | 15643531 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15642621 | 15642859 | 15642621 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15642150 | 15642230 | 15642150 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15641771 | 15641974 | 15641771 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15640960 | 15641154 | 15640960 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15640522 | 15640686 | 15640522 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15640135 | 15640395 | 15640135 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15637837 | 15638049 | 15637837 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15637452 | 15637668 | 15637452 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | CDS | 15637322 | 15637344 | 15637322 | ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1 |
chr5_3 | three_prime_UTR | 15636959 | 15637321 | 15636959 | ID=Msa0801590-mRNA-1:three_prime_utr;Parent=Msa0801590-mRNA-1 |
Gene Sequence |
Protein sequence |