AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801590 MtrunA17_Chr5g0408851 98.462 650 8 1 1 648 1 650 0.0 1341
Msa0801590 MtrunA17_Chr7g0247631 50.858 641 269 9 41 648 73 700 0.0 625
Msa0801590 MtrunA17_Chr4g0023601 45.038 393 212 3 215 605 12 402 9.81e-128 386
Msa0801590 MtrunA17_Chr2g0323051 41.609 435 245 4 215 642 85 517 1.14e-120 371
Msa0801590 MtrunA17_Chr5g0399991 38.013 463 269 8 187 642 59 510 2.54e-103 324
Msa0801590 MtrunA17_Chr4g0055281 36.832 505 303 10 137 635 4 498 1.35e-102 322
Msa0801590 MtrunA17_Chr5g0400001 38.789 446 255 8 203 642 75 508 2.12e-102 322
Msa0801590 MtrunA17_Chr6g0481031 39.487 390 229 6 216 600 106 493 5.44e-97 309
Msa0801590 MtrunA17_Chr8g0388651 35.872 407 251 7 217 615 80 484 1.41e-72 244
Msa0801590 MtrunA17_Chr2g0286431 35.372 376 231 7 216 586 83 451 1.28e-71 241
Msa0801590 MtrunA17_Chr1g0154651 50.725 69 34 0 50 118 14 82 2.12e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801590 AT5G45300.2 65.517 667 193 6 13 644 18 682 0.0 856
Msa0801590 AT5G45300.3 65.276 671 190 8 13 644 32 698 0.0 854
Msa0801590 AT5G45300.1 65.276 671 190 8 13 644 18 684 0.0 853
Msa0801590 AT2G45880.1 49.843 636 278 9 41 647 59 682 0.0 634
Msa0801590 AT4G00490.1 55.556 459 199 3 194 648 73 530 0.0 555
Msa0801590 AT2G32290.1 44.091 440 238 5 209 642 71 508 3.45e-124 380
Msa0801590 AT4G15210.2 43.511 393 217 4 215 604 13 403 3.26e-117 357
Msa0801590 AT4G15210.1 42.543 409 225 5 215 615 13 419 9.63e-117 358
Msa0801590 AT4G17090.1 40.698 430 245 8 216 640 86 510 5.79e-108 337
Msa0801590 AT4G15210.3 42.663 368 202 4 255 615 1 366 7.54e-105 325
Msa0801590 AT4G15210.4 42.663 368 202 4 255 615 1 366 7.54e-105 325
Msa0801590 AT3G23920.1 39.007 423 245 8 216 627 106 526 6.86e-101 320
Msa0801590 AT5G55700.1 33.667 499 301 12 132 615 21 504 4.16e-81 266
Msa0801590 AT5G18670.1 32.767 412 260 8 216 624 87 484 1.82e-63 219
Msa0801590 AT5G55700.2 37.942 311 180 6 316 615 33 341 6.64e-61 207

Find 186 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGGTATTGGTGAGTTTC+AGG 0.176787 5_3:-15640521 Msa0801590:intron
AACAACACCATCAATATTTA+AGG 0.189592 5_3:+15641879 None:intergenic
CCGGTGATCAGGATCATTTC+TGG 0.208369 5_3:+15637543 None:intergenic
CAATATTTAAGGACTTAATA+TGG 0.231011 5_3:+15641890 None:intergenic
CTTATGCAAGATATTCATTC+TGG 0.237659 5_3:-15642208 Msa0801590:CDS
ACCCAGACCACACATATTTC+TGG 0.247785 5_3:+15641818 None:intergenic
TTCCCTCCCACAATGGGTTT+TGG 0.258466 5_3:-15641079 Msa0801590:CDS
TCAGCAACCATCTTTGCTTC+AGG 0.288355 5_3:-15637500 Msa0801590:CDS
AATATGTGTGGTCTGGGTAT+AGG 0.294983 5_3:-15641813 Msa0801590:CDS
GGTGATTATGACAACTATTA+TGG 0.299107 5_3:-15640238 Msa0801590:CDS
TCAAATTCTGAAGGTTGTTA+TGG 0.309425 5_3:-15641145 Msa0801590:intron
TAAACGGCGGGGTTGTGGTT+GGG 0.311332 5_3:+15643781 None:intergenic
GAAATTGGTCTGGGAGCATC+TGG 0.323125 5_3:-15640589 Msa0801590:CDS
GTAAATTACACCCCACAAAA+TGG 0.336732 5_3:+15637271 None:intergenic
GGCTTCGCCGCCACGGCAGC+GGG 0.336954 5_3:-15643755 Msa0801590:CDS
GAACGAGGGTTGATCACTTC+TGG 0.343467 5_3:-15637628 Msa0801590:CDS
CCAATGACTCATTAGCTTCC+TGG 0.346299 5_3:+15637863 None:intergenic
ATTAAGTCCTTAAATATTGA+TGG 0.349118 5_3:-15641886 Msa0801590:CDS
TTTGAGAACTTGTTCGGTTA+AGG 0.350304 5_3:-15642776 Msa0801590:CDS
AAATGTTTGCCTGTCAGAAT+TGG 0.351900 5_3:-15637476 Msa0801590:CDS
AAGCAGTCAGTTGAATTGAT+TGG 0.355108 5_3:+15642634 None:intergenic
TGCAGGTTCCTGCCGTATAC+TGG 0.362202 5_3:-15638032 Msa0801590:intron
ATATGTGTGGTCTGGGTATA+GGG 0.362560 5_3:-15641812 Msa0801590:CDS
AGATGACAGGGAATCTTTAA+TGG 0.364572 5_3:-15637319 Msa0801590:exon
GAAATACTGAATGCCTATCT+TGG 0.365514 5_3:-15641005 Msa0801590:CDS
CGGAGCTGTGGTCGCTTTGT+GGG 0.367932 5_3:+15643813 None:intergenic
AAATTATGTCGAGGTTGTTA+TGG 0.369192 5_3:+15637124 None:intergenic
AAAAGGAACGAACGAAGCTC+CGG 0.369830 5_3:-15643691 Msa0801590:CDS
TGTTGTTGTGGATTGTTGGT+GGG 0.375591 5_3:-15641863 Msa0801590:CDS
GCTGCTCTCGCGCGTGAAGC+TGG 0.375664 5_3:-15643569 Msa0801590:CDS
CTGCATGGTCTACTAAAGTC+TGG 0.377028 5_3:+15640191 None:intergenic
TCGGAGCTGTGGTCGCTTTG+TGG 0.379351 5_3:+15643812 None:intergenic
TTGTAGTGCCCAGCATTATC+AGG 0.379757 5_3:+15640298 None:intergenic
AAACGGCGGGGTTGTGGTTG+GGG 0.380739 5_3:+15643782 None:intergenic
TGACTGCTTGGAGGCTGATC+AGG 0.381765 5_3:-15642620 Msa0801590:intron
ATGGTGTTGTTGTGGATTGT+TGG 0.383484 5_3:-15641867 Msa0801590:CDS
AGCTCCTGCCTAATGCCTTC+AGG 0.384829 5_3:+15641916 None:intergenic
ACCTGCCAACTCAGGCCATC+TGG 0.386436 5_3:+15637835 None:intergenic
AAAAGAGTGACCGCGTAGTT+TGG 0.391155 5_3:+15640333 None:intergenic
TGGATACTCTCCTGTGTTTG+AGG 0.393796 5_3:-15637944 Msa0801590:CDS
TTCTTTAATTATTAAGATAG+AGG 0.394296 5_3:-15637048 Msa0801590:three_prime_UTR
TTGATATGATGAGAAGCTTT+CGG 0.394412 5_3:-15640657 Msa0801590:CDS
TCCCAGAAATATGTGTGGTC+TGG 0.396705 5_3:-15641820 Msa0801590:CDS
ATGATTGATGCTGTAGAAAT+TGG 0.397538 5_3:-15640604 Msa0801590:CDS
CTCTCGCGCGTGAAGCTGGT+TGG 0.397545 5_3:-15643565 Msa0801590:CDS
AGCAGTCAGTTGAATTGATT+GGG 0.398837 5_3:+15642635 None:intergenic
TGTTGGTGGGGCATTGTTGA+AGG 0.399748 5_3:-15641850 Msa0801590:CDS
GTGTTGTTGTGGATTGTTGG+TGG 0.402184 5_3:-15641864 Msa0801590:CDS
CGAGTTCTCAAAGGAAGAAC+TGG 0.402924 5_3:-15640967 Msa0801590:CDS
AATGAAAAGTGCCGGTGATC+AGG 0.403522 5_3:+15637532 None:intergenic
CGGTGATCAGGATCATTTCT+GGG 0.406853 5_3:+15637544 None:intergenic
TGGCTTCGCCGCCACGGCAG+CGG 0.408569 5_3:-15643756 Msa0801590:CDS
TCCTAAGCAGACAAATTTCA+TGG 0.413620 5_3:+15637900 None:intergenic
CAGCAACCATCTTTGCTTCA+GGG 0.418330 5_3:-15637499 Msa0801590:CDS
ATATCACAATCCCACAAATC+AGG 0.419172 5_3:-15637968 Msa0801590:CDS
AAATACTGAATGCCTATCTT+GGG 0.426849 5_3:-15641004 Msa0801590:CDS
CTTTGTCAATTCCCCAAGAT+AGG 0.429608 5_3:+15640992 None:intergenic
TGATGGATCCTGAAGGCATT+AGG 0.431606 5_3:-15641924 Msa0801590:CDS
GTTGTTGTGGATTGTTGGTG+GGG 0.431988 5_3:-15641862 Msa0801590:CDS
TTACCTTGTTGTGGCTACAT+AGG 0.433218 5_3:-15637252 Msa0801590:three_prime_UTR
TTTATGTAAACAGGAACATA+TGG 0.433574 5_3:+15642157 None:intergenic
CCCAGACCACACATATTTCT+GGG 0.437815 5_3:+15641819 None:intergenic
GGTGGGGCATTGTTGAAGGC+TGG 0.439216 5_3:-15641846 Msa0801590:CDS
TAGCTCGACGGTGTCGTTCC+CGG 0.439316 5_3:+15643672 None:intergenic
TGCCTTCAGGATCCATCAAC+TGG 0.446486 5_3:+15641929 None:intergenic
GGGACAAATTCCACCGGAAA+AGG 0.446606 5_3:-15643734 Msa0801590:CDS
CCAGGAAGCTAATGAGTCAT+TGG 0.447793 5_3:-15637863 Msa0801590:CDS
ACATTTCCCTGAAGCAAAGA+TGG 0.448478 5_3:+15637493 None:intergenic
AAAAGAGCGAGAGAAAGAAA+AGG 0.450160 5_3:-15643708 Msa0801590:CDS
TACAGGTATTAAACTCAGCT+TGG 0.451086 5_3:-15637651 Msa0801590:intron
CCCAGAAATATGTGTGGTCT+GGG 0.451457 5_3:-15641819 Msa0801590:CDS
CAATCATACCTTCTGCAAAC+AGG 0.452909 5_3:+15640620 None:intergenic
AACTCTATGCCACATGAGAC+TGG 0.453839 5_3:-15640277 Msa0801590:CDS
AAGTCTATTGAAGTTGAAGT+TGG 0.454770 5_3:-15636966 Msa0801590:three_prime_UTR
AATCAATTCAACTGACTGCT+TGG 0.457237 5_3:-15642632 Msa0801590:CDS
TTGTGGTTGGGGTAAGTAAT+CGG 0.458554 5_3:+15643793 None:intergenic
TGGTACTTTGAGAACTTGTT+CGG 0.461516 5_3:-15642782 Msa0801590:CDS
AGTCTTGTACCACCAGTATA+CGG 0.462042 5_3:+15638020 None:intergenic
CCACGTAAACGGCGGGGTTG+TGG 0.464207 5_3:+15643776 None:intergenic
AGGATGGGGTGGAGGTATCC+TGG 0.464484 5_3:-15640538 Msa0801590:CDS
ACCTTGCGGCAAATGATCCC+TGG 0.465139 5_3:+15642827 None:intergenic
TTGTGTGGAAGTAGCATCTT+CGG 0.468284 5_3:+15643844 None:intergenic
CCACCCCATCCTTTCTGAAA+AGG 0.469410 5_3:+15640549 None:intergenic
TGGCGGCGAAGCCACGTAAA+CGG 0.470461 5_3:+15643765 None:intergenic
AGAATTCAAGCTGAATATAC+AGG 0.471133 5_3:-15641770 Msa0801590:intron
GTAAACGGCGGGGTTGTGGT+TGG 0.472699 5_3:+15643780 None:intergenic
ATTGATTTCCCTCCCACAAT+GGG 0.477212 5_3:-15641085 Msa0801590:CDS
TACCTTGTTGTGGCTACATA+GGG 0.478784 5_3:-15637251 Msa0801590:three_prime_UTR
ACCATGAAATTTGTCTGCTT+AGG 0.486759 5_3:-15637901 Msa0801590:CDS
GGCGAAGCCACGTAAACGGC+GGG 0.486888 5_3:+15643769 None:intergenic
TTATGCAAGATATTCATTCT+GGG 0.487754 5_3:-15642207 Msa0801590:CDS
TGCAATGTCTTCTGTAACAA+CGG 0.488157 5_3:-15637189 Msa0801590:three_prime_UTR
GTATGGTAATTTCCCTCTCC+CGG 0.489619 5_3:-15643618 Msa0801590:CDS
TTAGCTGGACTCCGTCAGTA+TGG 0.494728 5_3:-15643635 Msa0801590:CDS
ATCCTTGCAGGAGAGATGAC+AGG 0.495668 5_3:-15637332 Msa0801590:intron
CCAATATCCAAAACCCATTG+TGG 0.501815 5_3:+15641072 None:intergenic
GCTAGAGGACCTGATAATGC+TGG 0.501946 5_3:-15640307 Msa0801590:CDS
TGATGCTGTAGAAATTGGTC+TGG 0.501988 5_3:-15640599 Msa0801590:CDS
TCATTAGCTTCCTGGTTGGA+AGG 0.509262 5_3:+15637871 None:intergenic
ACAGGTATTAAACTCAGCTT+GGG 0.509640 5_3:-15637650 Msa0801590:intron
ATATCAGCACGCGCCGGGAG+AGG 0.510910 5_3:+15643605 None:intergenic
TTTCAGAAAGGATGGGGTGG+AGG 0.511254 5_3:-15640546 Msa0801590:CDS
CAATATCCAAAACCCATTGT+GGG 0.513279 5_3:+15641073 None:intergenic
CAATTCAACTGACTGCTTGG+AGG 0.518795 5_3:-15642629 Msa0801590:CDS
TTCTTCATCAAATGCATGCA+TGG 0.520174 5_3:-15637451 Msa0801590:intron
CCACAACCCCGCCGTTTACG+TGG 0.522685 5_3:-15643776 Msa0801590:CDS
AAAGGAACGAACGAAGCTCC+GGG 0.523828 5_3:-15643690 Msa0801590:CDS
GGGTGGAGGTATCCTGGTAT+TGG 0.524209 5_3:-15640532 Msa0801590:CDS
GGGTGTAATTTACCTTGTTG+TGG 0.525378 5_3:-15637261 Msa0801590:three_prime_UTR
CATTGATTTCCCTCCCACAA+TGG 0.525805 5_3:-15641086 Msa0801590:CDS
TCAGTTGAAAGTCAACCATC+TGG 0.528161 5_3:-15642805 Msa0801590:CDS
GCAGAAAGGGACTCAAAGAA+TGG 0.530370 5_3:-15642676 Msa0801590:CDS
GAGTATCCATCCTGATTTGT+GGG 0.533867 5_3:+15637958 None:intergenic
GGTTGGATTGTTGATGCTGA+TGG 0.534130 5_3:-15643548 Msa0801590:CDS
CAAAGGAAGAACTGGAATTG+AGG 0.535058 5_3:-15640959 Msa0801590:intron
AAAACAGAATCAATAGATGC+AGG 0.538608 5_3:+15642703 None:intergenic
TCCAGATGGCCTGAGTTGGC+AGG 0.543608 5_3:-15637836 Msa0801590:intron
CATTCATATCAGCACGCGCC+GGG 0.544842 5_3:+15643600 None:intergenic
AAATATTGATGGTGTTGTTG+TGG 0.545768 5_3:-15641875 Msa0801590:CDS
ATTTGTCCCCGCTGCCGTGG+CGG 0.547154 5_3:+15643748 None:intergenic
GTTATGGCATTTCATGAATG+TGG 0.548376 5_3:-15641129 Msa0801590:CDS
CTAAAATTACCTGCCAACTC+AGG 0.548595 5_3:+15637827 None:intergenic
ATCACGAGTAGAATGTTAGC+TGG 0.553331 5_3:-15643650 Msa0801590:CDS
GGATCCTGAAGGCATTAGGC+AGG 0.553951 5_3:-15641920 Msa0801590:CDS
CCCATCCTTTCTGAAAAGGA+AGG 0.556761 5_3:+15640553 None:intergenic
TATCAGCACGCGCCGGGAGA+GGG 0.558304 5_3:+15643606 None:intergenic
TTTACGTGGCTTCGCCGCCA+CGG 0.558514 5_3:-15643762 Msa0801590:CDS
AAACAAAGAATGAAAAGTGC+CGG 0.559419 5_3:+15637524 None:intergenic
TTTGATGACCTGTTTGCAGA+AGG 0.560533 5_3:-15640628 Msa0801590:CDS
GTCAATTCTGCTGCATGACT+AGG 0.563214 5_3:+15637997 None:intergenic
AGAGTATCCATCCTGATTTG+TGG 0.565198 5_3:+15637957 None:intergenic
TGCATGGTCTACTAAAGTCT+GGG 0.566186 5_3:+15640192 None:intergenic
CATGCAGCAGAATTGACTGC+AGG 0.566474 5_3:-15637991 Msa0801590:CDS
TCCAGGGATCATTTGCCGCA+AGG 0.566747 5_3:-15642828 Msa0801590:CDS
TGAAGAAATCCAATTCTGAC+AGG 0.567129 5_3:+15637467 None:intergenic
AACACTAGAGAATCAGTCAC+CGG 0.572564 5_3:-15642752 Msa0801590:CDS
ATGGACGCTTCTTCTTACAT+TGG 0.572612 5_3:-15640219 Msa0801590:CDS
TTGATCCAGATGGCCTGAGT+TGG 0.574969 5_3:-15637840 Msa0801590:CDS
CTAGAGGACCTGATAATGCT+GGG 0.581369 5_3:-15640306 Msa0801590:CDS
ACCTGAAACTCACCAATACC+AGG 0.584300 5_3:+15640520 None:intergenic
CACAATCCCACAAATCAGGA+TGG 0.585925 5_3:-15637964 Msa0801590:CDS
TTAAACTCAGCTTGGGAACG+AGG 0.585944 5_3:-15637643 Msa0801590:CDS
GACAAAGAGCGAGTTCTCAA+AGG 0.589070 5_3:-15640976 Msa0801590:CDS
TTGACTTTCAACTGACCTTG+CGG 0.590564 5_3:+15642813 None:intergenic
GGAATTTGTCCCCGCTGCCG+TGG 0.591731 5_3:+15643745 None:intergenic
TGGCATTTCATGAATGTGGA+GGG 0.594149 5_3:-15641125 Msa0801590:CDS
GAGACAAAACATTATCTGCA+TGG 0.594938 5_3:+15640176 None:intergenic
AGGATTTAATCCTTCCAACC+AGG 0.595036 5_3:-15637881 Msa0801590:CDS
ATCCAAAACCCATTGTGGGA+GGG 0.597274 5_3:+15641077 None:intergenic
AATTGGTCTGGGAGCATCTG+GGG 0.601511 5_3:-15640587 Msa0801590:CDS
TTGTACCACCAGTATACGGC+AGG 0.604078 5_3:+15638024 None:intergenic
TGACTCATTAGCTTCCTGGT+TGG 0.607296 5_3:+15637867 None:intergenic
CCAGAAATGATCCTGATCAC+CGG 0.607555 5_3:-15637543 Msa0801590:CDS
AGGAGGGAGACACTGGCGAT+AGG 0.608162 5_3:+15643520 None:intergenic
TATCCAAAACCCATTGTGGG+AGG 0.608960 5_3:+15641076 None:intergenic
GTACGAGAGATTGATTGAGA+TGG 0.613489 5_3:-15637572 Msa0801590:CDS
TAAACTCAGCTTGGGAACGA+GGG 0.616065 5_3:-15637642 Msa0801590:CDS
CATTCATCAACTCTAAGTCC+CGG 0.620550 5_3:+15642733 None:intergenic
TATGCAAGATATTCATTCTG+GGG 0.623010 5_3:-15642206 Msa0801590:CDS
CCATCCTTTCTGAAAAGGAA+GGG 0.623214 5_3:+15640554 None:intergenic
AAATTGGTCTGGGAGCATCT+GGG 0.623821 5_3:-15640588 Msa0801590:CDS
AAAGTTGTAAAATTATGTCG+AGG 0.624306 5_3:+15637115 None:intergenic
GGGGTAAGTAATCGGAGCTG+TGG 0.625072 5_3:+15643801 None:intergenic
TGCCAGTTGATGGATCCTGA+AGG 0.625854 5_3:-15641931 Msa0801590:CDS
GATGCTGTAGAAATTGGTCT+GGG 0.630924 5_3:-15640598 Msa0801590:CDS
TTGTGGGTCGAGATCTTGTG+TGG 0.631123 5_3:+15643829 None:intergenic
GTCCCTATGTAGCCACAACA+AGG 0.633615 5_3:+15637249 None:intergenic
TCCTTGCAGGAGAGATGACA+GGG 0.635497 5_3:-15637331 Msa0801590:intron
GAGTCATTGGTTGATCCAGA+TGG 0.635799 5_3:-15637850 Msa0801590:CDS
CGCAGAGCTGCCAAACTACG+CGG 0.638467 5_3:-15640343 Msa0801590:CDS
AATACTGAATGCCTATCTTG+GGG 0.642808 5_3:-15641003 Msa0801590:CDS
TCATTCATATCAGCACGCGC+CGG 0.643548 5_3:+15643599 None:intergenic
GCAGCGGGGACAAATTCCAC+CGG 0.648489 5_3:-15643740 Msa0801590:CDS
GGATATTGGAAAAGACAACC+AGG 0.649948 5_3:-15641058 Msa0801590:CDS
CAAAAGAATCCAGTCTCATG+TGG 0.650881 5_3:+15640268 None:intergenic
CGGCGAAGCCACGTAAACGG+CGG 0.652629 5_3:+15643768 None:intergenic
GAGGGAAATTACCATACTGA+CGG 0.656418 5_3:+15643624 None:intergenic
GCTTCGCCGCCACGGCAGCG+GGG 0.660164 5_3:-15643754 Msa0801590:CDS
ACACTAGAGAATCAGTCACC+GGG 0.668842 5_3:-15642751 Msa0801590:CDS
ATGGCATTTCATGAATGTGG+AGG 0.669763 5_3:-15641126 Msa0801590:CDS
GTTCTCAAAGTACCACCAGA+TGG 0.678737 5_3:+15642790 None:intergenic
TTCTACTCGTGATAGCTCGA+CGG 0.680739 5_3:+15643660 None:intergenic
AGGTTCCTGCCGTATACTGG+TGG 0.683068 5_3:-15638029 Msa0801590:CDS
GTTGAAAGTCAACCATCTGG+TGG 0.685021 5_3:-15642802 Msa0801590:CDS
GGAACTCCCAGAAATATGTG+TGG 0.702347 5_3:-15641825 Msa0801590:CDS
GCGAAGCCACGTAAACGGCG+GGG 0.745366 5_3:+15643770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAATATAAAAAGA+AGG + chr5_3:15637339-15637358 None:intergenic 10.0%
!! AATAAATTACAAATTTAGAT+GGG + chr5_3:15638581-15638600 None:intergenic 10.0%
!! AATAATAATAAACTTGAAAA+AGG - chr5_3:15641234-15641253 Msa0801590:intron 10.0%
!!! AAGAATTATTTTGTATTATT+AGG + chr5_3:15641529-15641548 None:intergenic 10.0%
!!! ATGTAATATATTTTCATTAA+TGG - chr5_3:15642431-15642450 Msa0801590:intron 10.0%
!!! AAATTAAGTTGTTAAAAATG+CGG + chr5_3:15637432-15637451 None:intergenic 15.0%
!!! TTTTTTATTTTGGTCTTAAT+CGG - chr5_3:15637717-15637736 Msa0801590:intron 15.0%
!! CAATAAATTACAAATTTAGA+TGG + chr5_3:15638582-15638601 None:intergenic 15.0%
!! GTAATAGAAAATAAATGATT+TGG + chr5_3:15639205-15639224 None:intergenic 15.0%
!! AATAGTTTAAGAACTTTATA+GGG + chr5_3:15639273-15639292 None:intergenic 15.0%
!! TAATAGTTTAAGAACTTTAT+AGG + chr5_3:15639274-15639293 None:intergenic 15.0%
!! TTATATTCTATATGTTTGTA+AGG - chr5_3:15640386-15640405 Msa0801590:intron 15.0%
!!! AAAAATTTGGTTTCAAAAAA+AGG - chr5_3:15640918-15640937 Msa0801590:intron 15.0%
!!! TAATATCTTATTTACTTTTG+TGG - chr5_3:15641330-15641349 Msa0801590:intron 15.0%
!!! TAGTTAGTAATAATTTGTTT+CGG - chr5_3:15641825-15641844 Msa0801590:CDS 15.0%
!!! TAGTTAGTAATAATTTGTTT+CGG - chr5_3:15641825-15641844 Msa0801590:CDS 15.0%
!! AAATAAAATAAATACCTGTT+TGG + chr5_3:15642519-15642538 None:intergenic 15.0%
!!! TAAAAATAGTTTCTAAAAAC+TGG - chr5_3:15642545-15642564 Msa0801590:intron 15.0%
!! TTCTTTAATTATTAAGATAG+AGG - chr5_3:15643768-15643787 Msa0801590:CDS 15.0%
!!! TCACTTTATATCTTTTGTTA+TGG + chr5_3:15637508-15637527 None:intergenic 20.0%
!!! TTGCTTAGAGTTTTTTATTT+TGG - chr5_3:15637707-15637726 Msa0801590:intron 20.0%
!!! TTTTTATTTTGGTCTTAATC+GGG - chr5_3:15637718-15637737 Msa0801590:intron 20.0%
!! AAATCAATATGTTGAAATGT+TGG - chr5_3:15637900-15637919 Msa0801590:CDS 20.0%
!! AATCAATATGTTGAAATGTT+GGG - chr5_3:15637901-15637920 Msa0801590:CDS 20.0%
!! TTAGTGTTTATGTTTGATTA+AGG - chr5_3:15637957-15637976 Msa0801590:CDS 20.0%
!! AGTTTATGTTGATATGATAT+CGG - chr5_3:15638329-15638348 Msa0801590:intron 20.0%
!! GAAAAAAAAATTGTACTTAC+AGG - chr5_3:15638755-15638774 Msa0801590:intron 20.0%
!! CAATATTTAAGGACTTAATA+TGG + chr5_3:15638929-15638948 None:intergenic 20.0%
!! ATTAAGTCCTTAAATATTGA+TGG - chr5_3:15638930-15638949 Msa0801590:intron 20.0%
!!! AGATAAATTTTCCATTTTGA+AGG + chr5_3:15639119-15639138 None:intergenic 20.0%
!! TATGATACATGATGATTAAT+AGG - chr5_3:15639174-15639193 Msa0801590:intron 20.0%
!! ATGATACATGATGATTAATA+GGG - chr5_3:15639175-15639194 Msa0801590:intron 20.0%
!!! CTTTAAAATATGTTTTGAAG+AGG - chr5_3:15639612-15639631 Msa0801590:intron 20.0%
!!! ATTTGTTTCTTGTTTGTATA+TGG - chr5_3:15640011-15640030 Msa0801590:intron 20.0%
!!! TATATCAATTTTTCATGTTG+TGG - chr5_3:15640717-15640736 Msa0801590:intron 20.0%
!! ATTAGCATTTATTCTATGAA+TGG + chr5_3:15640891-15640910 None:intergenic 20.0%
!! ATTCATAGAATAAATGCTAA+TGG - chr5_3:15640890-15640909 Msa0801590:intron 20.0%
!!! AAAGTTTTAACGATACAATT+TGG - chr5_3:15641442-15641461 Msa0801590:intron 20.0%
!!! TTCTTTTTAATATCTTAACG+TGG - chr5_3:15641782-15641801 Msa0801590:CDS 20.0%
!!! TTTCTGTTAGAATTTCTTTT+TGG - chr5_3:15641873-15641892 Msa0801590:CDS 20.0%
!!! TTCTGTTAGAATTTCTTTTT+GGG - chr5_3:15641874-15641893 Msa0801590:CDS 20.0%
!!! TTCTTTTTAATATCTTAACG+TGG - chr5_3:15641782-15641801 Msa0801590:CDS 20.0%
!!! TTTCTGTTAGAATTTCTTTT+TGG - chr5_3:15641873-15641892 Msa0801590:CDS 20.0%
!!! TTCTGTTAGAATTTCTTTTT+GGG - chr5_3:15641874-15641893 Msa0801590:CDS 20.0%
!!! TGAAAATTCTAAAACTTGTT+TGG - chr5_3:15642010-15642029 Msa0801590:intron 20.0%
!! TAAAAATAAGATTACCAAAC+AGG - chr5_3:15642502-15642521 Msa0801590:intron 20.0%
!! AAGAGTTTATGATTAAACTT+GGG + chr5_3:15642621-15642640 None:intergenic 20.0%
!! AAAGAGTTTATGATTAAACT+TGG + chr5_3:15642622-15642641 None:intergenic 20.0%
!!! AGTATTAACATTTTAACGTT+AGG - chr5_3:15642657-15642676 Msa0801590:CDS 20.0%
!!! TTTGAAATAACTTGTATGAT+GGG - chr5_3:15643032-15643051 Msa0801590:intron 20.0%
!!! ATTACATATTTTGATCAACT+TGG - chr5_3:15643101-15643120 Msa0801590:intron 20.0%
!! TTGTTAAAAAGTAAGATTTG+CGG + chr5_3:15643523-15643542 None:intergenic 20.0%
!! TATTTTCATAAACTCTCGAA+TGG + chr5_3:15637561-15637580 None:intergenic 25.0%
! TTATGAAAATAAGCTGAACA+CGG - chr5_3:15637570-15637589 Msa0801590:CDS 25.0%
! TCTAAGCAATAACTAACTAA+GGG + chr5_3:15637696-15637715 None:intergenic 25.0%
!!! TTTTATTTTGGTCTTAATCG+GGG - chr5_3:15637719-15637738 Msa0801590:intron 25.0%
!!! TAACGCATTTTAGTTAAGTT+CGG + chr5_3:15637820-15637839 None:intergenic 25.0%
!!! TGATTAAGGTTTTATTATCC+AGG - chr5_3:15637971-15637990 Msa0801590:CDS 25.0%
!!! GATTAAGGTTTTATTATCCA+GGG - chr5_3:15637972-15637991 Msa0801590:CDS 25.0%
!!! ATTCTGTTTTAATTGCAGAA+AGG - chr5_3:15638126-15638145 Msa0801590:intron 25.0%
!!! TTCTGTTTTAATTGCAGAAA+GGG - chr5_3:15638127-15638146 Msa0801590:intron 25.0%
! GCGTGTTTAAATTTATAATG+TGG - chr5_3:15638532-15638551 Msa0801590:intron 25.0%
! TTATGCAAGATATTCATTCT+GGG - chr5_3:15638609-15638628 Msa0801590:intron 25.0%
! TTTATGTAAACAGGAACATA+TGG + chr5_3:15638662-15638681 None:intergenic 25.0%
! ATAAATATGAGACACTTACT+GGG + chr5_3:15638688-15638707 None:intergenic 25.0%
! AATAAATATGAGACACTTAC+TGG + chr5_3:15638689-15638708 None:intergenic 25.0%
!!! TTTTCTAGAACTTTTTACAC+AGG + chr5_3:15638740-15638759 None:intergenic 25.0%
!!! TAAAATTAGCCTTTTATTGC+AGG - chr5_3:15638842-15638861 Msa0801590:intron 25.0%
! AACAACACCATCAATATTTA+AGG + chr5_3:15638940-15638959 None:intergenic 25.0%
!!! AAATTTTCCATTTTGAAGGA+TGG + chr5_3:15639115-15639134 None:intergenic 25.0%
! TAAACTATTACACTACATGA+AGG - chr5_3:15639284-15639303 Msa0801590:intron 25.0%
! GGTATGTAAACATAAATAAC+AGG + chr5_3:15639950-15639969 None:intergenic 25.0%
!!! TAATGCAACTGTTTTGAAAT+GGG + chr5_3:15640338-15640357 None:intergenic 25.0%
!!! ATAATGCAACTGTTTTGAAA+TGG + chr5_3:15640339-15640358 None:intergenic 25.0%
! CTTATAACTGTGACTAAATT+TGG - chr5_3:15640746-15640765 Msa0801590:intron 25.0%
! TTGCATTCATAATTGATAGA+TGG - chr5_3:15640795-15640814 Msa0801590:intron 25.0%
! AGTAAATGCCTCATATTAAA+GGG + chr5_3:15640845-15640864 None:intergenic 25.0%
! TAGTAAATGCCTCATATTAA+AGG + chr5_3:15640846-15640865 None:intergenic 25.0%
! GCTAATGGTGTATAAAAATT+TGG - chr5_3:15640905-15640924 Msa0801590:intron 25.0%
!! AACTATAATTACGACTCTTT+TGG + chr5_3:15641123-15641142 None:intergenic 25.0%
!! AAAGGAAGAGAAACTTTTAT+GGG + chr5_3:15641385-15641404 None:intergenic 25.0%
!! TAAAGGAAGAGAAACTTTTA+TGG + chr5_3:15641386-15641405 None:intergenic 25.0%
! ATTTAGGGGTAAAAACTTAA+AGG + chr5_3:15641403-15641422 None:intergenic 25.0%
! TAAAATGGGATGAAAAATCA+AGG + chr5_3:15641480-15641499 None:intergenic 25.0%
!! TGATTTTTCATCCCATTTTA+AGG - chr5_3:15641480-15641499 Msa0801590:intron 25.0%
!! GATTTTTCATCCCATTTTAA+GGG - chr5_3:15641481-15641500 Msa0801590:intron 25.0%
!! ATTTTTCATCCCATTTTAAG+GGG - chr5_3:15641482-15641501 Msa0801590:intron 25.0%
! TACAAAATAATTCTTGCTTG+TGG - chr5_3:15641534-15641553 Msa0801590:intron 25.0%
! GCATAATACAATAACTTTGA+CGG + chr5_3:15641587-15641606 None:intergenic 25.0%
! TAGTTTAATGTAACAACCAA+GGG + chr5_3:15641751-15641770 None:intergenic 25.0%
! TTAGTTTAATGTAACAACCA+AGG + chr5_3:15641752-15641771 None:intergenic 25.0%
!! TCTGTTAGAATTTCTTTTTG+GGG - chr5_3:15641875-15641894 Msa0801590:CDS 25.0%
! TTTAACTATTCAATGCAGAA+AGG - chr5_3:15641929-15641948 Msa0801590:CDS 25.0%
! TTTCAAAAACAGAATCAAAC+AGG + chr5_3:15641967-15641986 None:intergenic 25.0%
!! TCTGTTAGAATTTCTTTTTG+GGG - chr5_3:15641875-15641894 Msa0801590:CDS 25.0%
! TTTAACTATTCAATGCAGAA+AGG - chr5_3:15641929-15641948 Msa0801590:CDS 25.0%
! TTTCAAAAACAGAATCAAAC+AGG + chr5_3:15641967-15641986 None:intergenic 25.0%
!!! GGAAACAGTTTTTAAAAAGT+AGG + chr5_3:15642309-15642328 None:intergenic 25.0%
!! GCAAAACATAAAACAGTTTT+GGG + chr5_3:15642330-15642349 None:intergenic 25.0%
!! AGCAAAACATAAAACAGTTT+TGG + chr5_3:15642331-15642350 None:intergenic 25.0%
! AGTTTCCAAAACTAAAAACA+CGG - chr5_3:15642406-15642425 Msa0801590:intron 25.0%
!!! ATGGCATTTTAGTAAATAAG+TGG - chr5_3:15642450-15642469 Msa0801590:intron 25.0%
! AGAGTTTATGATTAAACTTG+GGG + chr5_3:15642620-15642639 None:intergenic 25.0%
! ATTCATTAAGTTTAGAGACA+AGG + chr5_3:15642758-15642777 None:intergenic 25.0%
!!! CTTTGAAATAACTTGTATGA+TGG - chr5_3:15643031-15643050 Msa0801590:intron 25.0%
! ATAGATCAAAGTGAATTCTA+AGG + chr5_3:15643400-15643419 None:intergenic 25.0%
!!! GCAAATCTTACTTTTTAACA+AGG - chr5_3:15643522-15643541 Msa0801590:intron 25.0%
! AAAGTTGTAAAATTATGTCG+AGG + chr5_3:15643704-15643723 None:intergenic 25.0%
!!! CGATCCTTTTTTTGATAATA+AGG - chr5_3:15643740-15643759 Msa0801590:CDS 25.0%
! CGAACCTTATTATCAAAAAA+AGG + chr5_3:15643747-15643766 None:intergenic 25.0%
TGATGATTACTTCTGATTGA+AGG - chr5_3:15637358-15637377 Msa0801590:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr5_3:15637670-15637689 Msa0801590:intron 30.0%
CTCTAAGCAATAACTAACTA+AGG + chr5_3:15637697-15637716 None:intergenic 30.0%
!! CTTATTTTCGAATCAATCAC+TGG + chr5_3:15637749-15637768 None:intergenic 30.0%
CTGAACTACTTGATTTAGTT+GGG - chr5_3:15637850-15637869 Msa0801590:CDS 30.0%
TGAACTACTTGATTTAGTTG+GGG - chr5_3:15637851-15637870 Msa0801590:CDS 30.0%
AATATGTTGAAATGTTGGGT+TGG - chr5_3:15637905-15637924 Msa0801590:CDS 30.0%
ATATGTTGAAATGTTGGGTT+GGG - chr5_3:15637906-15637925 Msa0801590:CDS 30.0%
AAAACAGAATCAATAGATGC+AGG + chr5_3:15638116-15638135 None:intergenic 30.0%
CATAAACTAGAAAAACAGTG+AGG + chr5_3:15638317-15638336 None:intergenic 30.0%
! GGTGTGTATTGATATACTAT+TGG - chr5_3:15638398-15638417 Msa0801590:intron 30.0%
TGAAATAAGCTTCATGCAAT+TGG + chr5_3:15638484-15638503 None:intergenic 30.0%
TAAATTTAAACACGCCACTT+GGG + chr5_3:15638527-15638546 None:intergenic 30.0%
ATAAATTTAAACACGCCACT+TGG + chr5_3:15638528-15638547 None:intergenic 30.0%
CTTATGCAAGATATTCATTC+TGG - chr5_3:15638608-15638627 Msa0801590:intron 30.0%
TATGCAAGATATTCATTCTG+GGG - chr5_3:15638610-15638629 Msa0801590:intron 30.0%
!! TTTGACTTGTATTTGATCAC+AGG - chr5_3:15638814-15638833 Msa0801590:intron 30.0%
!! TTGACTTGTATTTGATCACA+GGG - chr5_3:15638815-15638834 Msa0801590:intron 30.0%
! TAACAAATTTTGCCAGTTGA+TGG - chr5_3:15638875-15638894 Msa0801590:intron 30.0%
!! AAATATTGATGGTGTTGTTG+TGG - chr5_3:15638941-15638960 Msa0801590:intron 30.0%
AGAATTCAAGCTGAATATAC+AGG - chr5_3:15639046-15639065 Msa0801590:intron 30.0%
!! TATTACAAGAGTGTCATTTC+TGG - chr5_3:15639219-15639238 Msa0801590:intron 30.0%
AGTTTAAGAACTTTATAGGG+AGG + chr5_3:15639270-15639289 None:intergenic 30.0%
TAAAGATGCTTTCCAATTAG+AGG + chr5_3:15639597-15639616 None:intergenic 30.0%
AGAATTTGAAGAGTCAAGAT+AGG + chr5_3:15639660-15639679 None:intergenic 30.0%
! TCAAATTCTGAAGGTTGTTA+TGG - chr5_3:15639671-15639690 Msa0801590:intron 30.0%
! ATATTTTTCACAGATCGTGA+AGG - chr5_3:15639783-15639802 Msa0801590:intron 30.0%
AAATACTGAATGCCTATCTT+GGG - chr5_3:15639812-15639831 Msa0801590:intron 30.0%
TATCTGCATTTCATCTGAAA+GGG - chr5_3:15639981-15640000 Msa0801590:intron 30.0%
TTGATATGATGAGAAGCTTT+CGG - chr5_3:15640159-15640178 Msa0801590:CDS 30.0%
ATGATTGATGCTGTAGAAAT+TGG - chr5_3:15640212-15640231 Msa0801590:CDS 30.0%
!!! AATGCAACTGTTTTGAAATG+GGG + chr5_3:15640337-15640356 None:intergenic 30.0%
GGTGATTATGACAACTATTA+TGG - chr5_3:15640578-15640597 Msa0801590:CDS 30.0%
GGGAACAAAAATTATTGTCA+AGG - chr5_3:15640682-15640701 Msa0801590:intron 30.0%
! TATTGTCAAGGTAGTTTTTC+TGG - chr5_3:15640694-15640713 Msa0801590:intron 30.0%
TCAAAAATCAAGAGAAGCTA+TGG - chr5_3:15641053-15641072 Msa0801590:CDS 30.0%
TAAATGTCCAAGTTGTATGA+TGG - chr5_3:15641078-15641097 Msa0801590:CDS 30.0%
GCAAGATATTCAAATCTTGT+TGG - chr5_3:15641150-15641169 Msa0801590:intron 30.0%
! TATTCAAATCTTGTTGGTGA+AGG - chr5_3:15641156-15641175 Msa0801590:intron 30.0%
TACAACCTTAGTTTCACATA+TGG - chr5_3:15641260-15641279 Msa0801590:intron 30.0%
ACAACCTTAGTTTCACATAT+GGG - chr5_3:15641261-15641280 Msa0801590:intron 30.0%
! CAAGTCTATGTTTGATTTAG+GGG + chr5_3:15641417-15641436 None:intergenic 30.0%
! CCAAGTCTATGTTTGATTTA+GGG + chr5_3:15641418-15641437 None:intergenic 30.0%
GTTCAATATCCCCTTAAAAT+GGG + chr5_3:15641494-15641513 None:intergenic 30.0%
AGTTCAATATCCCCTTAAAA+TGG + chr5_3:15641495-15641514 None:intergenic 30.0%
AGTTATTGTATTATGCAGTG+TGG - chr5_3:15641591-15641610 Msa0801590:intron 30.0%
AGTTGAGAAAAGGGTAAATT+TGG - chr5_3:15641617-15641636 Msa0801590:intron 30.0%
GTTGAGAAAAGGGTAAATTT+GGG - chr5_3:15641618-15641637 Msa0801590:intron 30.0%
AGTTTAATGTAACAACCAAG+GGG + chr5_3:15641750-15641769 None:intergenic 30.0%
CTAACTATGATTCCAGATAA+AGG + chr5_3:15641812-15641831 None:intergenic 30.0%
AATGCAGAAAGGACAAATTA+AGG - chr5_3:15641940-15641959 Msa0801590:CDS 30.0%
ATGCAGAAAGGACAAATTAA+GGG - chr5_3:15641941-15641960 Msa0801590:CDS 30.0%
CTAACTATGATTCCAGATAA+AGG + chr5_3:15641812-15641831 None:intergenic 30.0%
AATGCAGAAAGGACAAATTA+AGG - chr5_3:15641940-15641959 Msa0801590:CDS 30.0%
ATGCAGAAAGGACAAATTAA+GGG - chr5_3:15641941-15641960 Msa0801590:CDS 30.0%
!!! GTGTTTTTAGTTTTGGAAAC+TGG + chr5_3:15642407-15642426 None:intergenic 30.0%
!!! CATTTCCGTGTTTTTAGTTT+TGG + chr5_3:15642414-15642433 None:intergenic 30.0%
!! GCAGGATATGTATTTTTAAG+TGG + chr5_3:15642700-15642719 None:intergenic 30.0%
! GTTATTTCAAAGCTGGATTA+AGG + chr5_3:15643023-15643042 None:intergenic 30.0%
! CATACAAGTTATTTCAAAGC+TGG + chr5_3:15643030-15643049 None:intergenic 30.0%
! TTTCATCCATTTGTTACGAA+TGG - chr5_3:15643136-15643155 Msa0801590:intron 30.0%
!! TCTTTTGCTATGATAGAGAA+AGG - chr5_3:15643222-15643241 Msa0801590:intron 30.0%
! AAACAAAGAATGAAAAGTGC+CGG + chr5_3:15643295-15643314 None:intergenic 30.0%
! TTAAAGCTTTTTATCCTTGC+AGG - chr5_3:15643472-15643491 Msa0801590:intron 30.0%
!! TTTTTAACAAGGCCATTTTG+TGG - chr5_3:15643533-15643552 Msa0801590:CDS 30.0%
!! TTTTAACAAGGCCATTTTGT+GGG - chr5_3:15643534-15643553 Msa0801590:CDS 30.0%
AAATTATGTCGAGGTTGTTA+TGG + chr5_3:15643695-15643714 None:intergenic 30.0%
AAGTCTATTGAAGTTGAAGT+TGG - chr5_3:15643850-15643869 Msa0801590:CDS 30.0%
!!! TCGCTCTTTTTTTCCTTTTC+CGG + chr5_3:15637098-15637117 None:intergenic 35.0%
AAAAGAGCGAGAGAAAGAAA+AGG - chr5_3:15637108-15637127 Msa0801590:three_prime_UTR 35.0%
TAACTAACTAAGGGCCTATT+TGG + chr5_3:15637687-15637706 None:intergenic 35.0%
TTAGTTAAGTTCGGATAGCT+TGG + chr5_3:15637811-15637830 None:intergenic 35.0%
GCTGAACTACTTGATTTAGT+TGG - chr5_3:15637849-15637868 Msa0801590:CDS 35.0%
! TGGTACTTTGAGAACTTGTT+CGG - chr5_3:15638034-15638053 Msa0801590:intron 35.0%
! TTTGAGAACTTGTTCGGTTA+AGG - chr5_3:15638040-15638059 Msa0801590:intron 35.0%
AGCAGTCAGTTGAATTGATT+GGG + chr5_3:15638184-15638203 None:intergenic 35.0%
AAGCAGTCAGTTGAATTGAT+TGG + chr5_3:15638185-15638204 None:intergenic 35.0%
AATCAATTCAACTGACTGCT+TGG - chr5_3:15638184-15638203 Msa0801590:intron 35.0%
!! GTTAGTGTTTTTAACCCAAG+TGG - chr5_3:15638510-15638529 Msa0801590:intron 35.0%
!! ACTGGGAGTTTTATGTAAAC+AGG + chr5_3:15638671-15638690 None:intergenic 35.0%
! CTAGAACTTTTTACACAGGT+TGG + chr5_3:15638736-15638755 None:intergenic 35.0%
AACAGAGTTAAAGCCTCAAA+AGG + chr5_3:15638796-15638815 None:intergenic 35.0%
TAATACCAGCCTGCAATAAA+AGG + chr5_3:15638854-15638873 None:intergenic 35.0%
GGATGCATGTATAACATGAT+AGG + chr5_3:15639094-15639113 None:intergenic 35.0%
ACTACATGAAGGACTGAATA+GGG - chr5_3:15639295-15639314 Msa0801590:intron 35.0%
ATAAGATTGTTTCCCTAGCT+TGG - chr5_3:15639423-15639442 Msa0801590:intron 35.0%
TTCACATACTATCCAAGCTA+GGG + chr5_3:15639438-15639457 None:intergenic 35.0%
TTTCACATACTATCCAAGCT+AGG + chr5_3:15639439-15639458 None:intergenic 35.0%
CTTGACTCTTCAAATTCTGA+AGG - chr5_3:15639662-15639681 Msa0801590:intron 35.0%
GTTATGGCATTTCATGAATG+TGG - chr5_3:15639687-15639706 Msa0801590:intron 35.0%
CAATATCCAAAACCCATTGT+GGG + chr5_3:15639746-15639765 None:intergenic 35.0%
GATCTGTGAAAAATATGTCC+TGG + chr5_3:15639779-15639798 None:intergenic 35.0%
GAAATACTGAATGCCTATCT+TGG - chr5_3:15639811-15639830 Msa0801590:intron 35.0%
AATACTGAATGCCTATCTTG+GGG - chr5_3:15639813-15639832 Msa0801590:intron 35.0%
AATGCAGATACACTGGAAAT+TGG + chr5_3:15639971-15639990 None:intergenic 35.0%
GTATCTGCATTTCATCTGAA+AGG - chr5_3:15639980-15639999 Msa0801590:intron 35.0%
TAGCCTTCTGCATTATATAC+AGG - chr5_3:15640130-15640149 Msa0801590:intron 35.0%
AGACCTGTATATAATGCAGA+AGG + chr5_3:15640136-15640155 None:intergenic 35.0%
! AATACCCTTCCTTTTCAGAA+AGG - chr5_3:15640258-15640277 Msa0801590:CDS 35.0%
GAGACAAAACATTATCTGCA+TGG + chr5_3:15640643-15640662 None:intergenic 35.0%
! TTTTTGTTCCCTCAAAAGCA+AGG + chr5_3:15640673-15640692 None:intergenic 35.0%
TTGGTATGCCCTTTAATATG+AGG - chr5_3:15640834-15640853 Msa0801590:intron 35.0%
GAAAATGCCATCATACAACT+TGG + chr5_3:15641088-15641107 None:intergenic 35.0%
CAACCTTAGTTTCACATATG+GGG - chr5_3:15641262-15641281 Msa0801590:intron 35.0%
TTACCCCATATGTGAAACTA+AGG + chr5_3:15641268-15641287 None:intergenic 35.0%
ATGGGGTAAAATTCAATCTC+CGG - chr5_3:15641279-15641298 Msa0801590:intron 35.0%
CCCTAAATCAAACATAGACT+TGG - chr5_3:15641415-15641434 Msa0801590:intron 35.0%
! GCCAAGTCTATGTTTGATTT+AGG + chr5_3:15641419-15641438 None:intergenic 35.0%
AGTGTGGTTTAGTTGAGAAA+AGG - chr5_3:15641607-15641626 Msa0801590:intron 35.0%
GTGTGGTTTAGTTGAGAAAA+GGG - chr5_3:15641608-15641627 Msa0801590:intron 35.0%
CTATCTACAATAGACCCAAA+TGG + chr5_3:15641687-15641706 None:intergenic 35.0%
AAGTTTGAGTCGTGAATCAA+AGG + chr5_3:15641715-15641734 None:intergenic 35.0%
TAACGTGGTAATCCTTTATC+TGG - chr5_3:15641797-15641816 Msa0801590:CDS 35.0%
TAACGTGGTAATCCTTTATC+TGG - chr5_3:15641797-15641816 Msa0801590:CDS 35.0%
AACTGAAAACGCAATCAAAC+AGG - chr5_3:15642594-15642613 Msa0801590:intron 35.0%
!! CATTTTAACGTTAGGATGCA+TGG - chr5_3:15642665-15642684 Msa0801590:CDS 35.0%
! ATGCTTTTACTTTCAATGGC+AGG + chr5_3:15642718-15642737 None:intergenic 35.0%
! TGGCATGCTTTTACTTTCAA+TGG + chr5_3:15642722-15642741 None:intergenic 35.0%
GACAAGGATACAACTTCATT+TGG + chr5_3:15642742-15642761 None:intergenic 35.0%
ACTTAATGAATAAACGCTGC+AGG - chr5_3:15642767-15642786 Msa0801590:CDS 35.0%
ATATCACAATCCCACAAATC+AGG - chr5_3:15642848-15642867 Msa0801590:intron 35.0%
!! TTTTTCAGAACCTCAAACAC+AGG + chr5_3:15642885-15642904 None:intergenic 35.0%
ACCATGAAATTTGTCTGCTT+AGG - chr5_3:15642915-15642934 Msa0801590:intron 35.0%
TCCTAAGCAGACAAATTTCA+TGG + chr5_3:15642919-15642938 None:intergenic 35.0%
ATTTCAAAGCTGGATTAAGG+TGG + chr5_3:15643020-15643039 None:intergenic 35.0%
CAAATGGATGAAAACATGCA+TGG + chr5_3:15643129-15643148 None:intergenic 35.0%
CAATCACCATTCGTAACAAA+TGG + chr5_3:15643145-15643164 None:intergenic 35.0%
TACAGGTATTAAACTCAGCT+TGG - chr5_3:15643165-15643184 Msa0801590:intron 35.0%
ACAGGTATTAAACTCAGCTT+GGG - chr5_3:15643166-15643185 Msa0801590:intron 35.0%
AAATGTTTGCCTGTCAGAAT+TGG - chr5_3:15643340-15643359 Msa0801590:intron 35.0%
TGAAGAAATCCAATTCTGAC+AGG + chr5_3:15643352-15643371 None:intergenic 35.0%
TTCTTCATCAAATGCATGCA+TGG - chr5_3:15643365-15643384 Msa0801590:intron 35.0%
AGATGACAGGGAATCTTTAA+TGG - chr5_3:15643497-15643516 Msa0801590:intron 35.0%
!! TTTAACAAGGCCATTTTGTG+GGG - chr5_3:15643535-15643554 Msa0801590:CDS 35.0%
GTAAATTACACCCCACAAAA+TGG + chr5_3:15643548-15643567 None:intergenic 35.0%
TGCAATGTCTTCTGTAACAA+CGG - chr5_3:15643627-15643646 Msa0801590:CDS 35.0%
TTGTGTGGAAGTAGCATCTT+CGG + chr5_3:15636975-15636994 None:intergenic 40.0%
TTGTGGTTGGGGTAAGTAAT+CGG + chr5_3:15637026-15637045 None:intergenic 40.0%
!!! CTCTTTTTTTCCTTTTCCGG+TGG + chr5_3:15637095-15637114 None:intergenic 40.0%
ATCACGAGTAGAATGTTAGC+TGG - chr5_3:15637166-15637185 Msa0801590:three_prime_UTR 40.0%
GAGGGAAATTACCATACTGA+CGG + chr5_3:15637195-15637214 None:intergenic 40.0%
AAGAAGGAAAGCAACCATGT+TGG + chr5_3:15637323-15637342 None:intergenic 40.0%
! TTAAAAATGCGGTGCTAGGT+AGG + chr5_3:15637421-15637440 None:intergenic 40.0%
GTTGTTAAAAATGCGGTGCT+AGG + chr5_3:15637425-15637444 None:intergenic 40.0%
AACTAAGGGCCTATTTGGAT+TGG + chr5_3:15637682-15637701 None:intergenic 40.0%
TTGACTTTCAACTGACCTTG+CGG + chr5_3:15638006-15638025 None:intergenic 40.0%
TCAGTTGAAAGTCAACCATC+TGG - chr5_3:15638011-15638030 Msa0801590:CDS 40.0%
AACACTAGAGAATCAGTCAC+CGG - chr5_3:15638064-15638083 Msa0801590:intron 40.0%
CATTCATCAACTCTAAGTCC+CGG + chr5_3:15638086-15638105 None:intergenic 40.0%
CTCAGCATAATCAGATTCTC+TGG - chr5_3:15638372-15638391 Msa0801590:intron 40.0%
CATAATCAGATTCTCTGGTC+TGG - chr5_3:15638377-15638396 Msa0801590:intron 40.0%
!! ATGCAATTGGTTCGCAACTT+TGG + chr5_3:15638471-15638490 None:intergenic 40.0%
ATGTCGAGAAGTGATTGAAC+AGG - chr5_3:15638555-15638574 Msa0801590:intron 40.0%
!!! ATTAGCCTTTTATTGCAGGC+TGG - chr5_3:15638846-15638865 Msa0801590:intron 40.0%
!! ATGGTGTTGTTGTGGATTGT+TGG - chr5_3:15638949-15638968 Msa0801590:intron 40.0%
! TGTTGTTGTGGATTGTTGGT+GGG - chr5_3:15638953-15638972 Msa0801590:intron 40.0%
AATATGTGTGGTCTGGGTAT+AGG - chr5_3:15639003-15639022 Msa0801590:intron 40.0%
ATATGTGTGGTCTGGGTATA+GGG - chr5_3:15639004-15639023 Msa0801590:intron 40.0%
CATGCATCCATCCTTCAAAA+TGG - chr5_3:15639105-15639124 Msa0801590:intron 40.0%
!! CAAGAGTGTCATTTCTGGTT+AGG - chr5_3:15639224-15639243 Msa0801590:intron 40.0%
CACTACATGAAGGACTGAAT+AGG - chr5_3:15639294-15639313 Msa0801590:intron 40.0%
AATAGGGAACACAGAGAATG+TGG - chr5_3:15639311-15639330 Msa0801590:intron 40.0%
ATGGCATTTCATGAATGTGG+AGG - chr5_3:15639690-15639709 Msa0801590:intron 40.0%
TGGCATTTCATGAATGTGGA+GGG - chr5_3:15639691-15639710 Msa0801590:intron 40.0%
! ATTGATTTCCCTCCCACAAT+GGG - chr5_3:15639731-15639750 Msa0801590:intron 40.0%
CCAATATCCAAAACCCATTG+TGG + chr5_3:15639747-15639766 None:intergenic 40.0%
!!! CCACAATGGGTTTTGGATAT+TGG - chr5_3:15639744-15639763 Msa0801590:intron 40.0%
GGATATTGGAAAAGACAACC+AGG - chr5_3:15639758-15639777 Msa0801590:intron 40.0%
! TTTTCACAGATCGTGAAGGA+CGG - chr5_3:15639787-15639806 Msa0801590:intron 40.0%
CTTTGTCAATTCCCCAAGAT+AGG + chr5_3:15639827-15639846 None:intergenic 40.0%
CAAAGGAAGAACTGGAATTG+AGG - chr5_3:15639857-15639876 Msa0801590:intron 40.0%
CAGATGAAATGCAGATACAC+TGG + chr5_3:15639978-15639997 None:intergenic 40.0%
! TTTGATGACCTGTTTGCAGA+AGG - chr5_3:15640188-15640207 Msa0801590:CDS 40.0%
CAATCATACCTTCTGCAAAC+AGG + chr5_3:15640199-15640218 None:intergenic 40.0%
TGATGCTGTAGAAATTGGTC+TGG - chr5_3:15640217-15640236 Msa0801590:CDS 40.0%
! GATGCTGTAGAAATTGGTCT+GGG - chr5_3:15640218-15640237 Msa0801590:CDS 40.0%
! CCATCCTTTCTGAAAAGGAA+GGG + chr5_3:15640265-15640284 None:intergenic 40.0%
! CCTTCCTTTTCAGAAAGGAT+GGG - chr5_3:15640263-15640282 Msa0801590:CDS 40.0%
! CTTCCTTTTCAGAAAGGATG+GGG - chr5_3:15640264-15640283 Msa0801590:CDS 40.0%
!! TTTCAGGTACCTCGTTCTTT+TGG - chr5_3:15640311-15640330 Msa0801590:CDS 40.0%
CAAAAGAATCCAGTCTCATG+TGG + chr5_3:15640551-15640570 None:intergenic 40.0%
ATGGACGCTTCTTCTTACAT+TGG - chr5_3:15640597-15640616 Msa0801590:CDS 40.0%
TGCATGGTCTACTAAAGTCT+GGG + chr5_3:15640627-15640646 None:intergenic 40.0%
!! TCTTGCAAACCTTGCTTTTG+AGG - chr5_3:15640661-15640680 Msa0801590:CDS 40.0%
!! CTTGCAAACCTTGCTTTTGA+GGG - chr5_3:15640662-15640681 Msa0801590:CDS 40.0%
TGGTACCTATAGAGTCAGTT+TGG - chr5_3:15640815-15640834 Msa0801590:intron 40.0%
! GCATACCAAACTGACTCTAT+AGG + chr5_3:15640823-15640842 None:intergenic 40.0%
GGAAACCAGGAAGAAAACAA+AGG - chr5_3:15641192-15641211 Msa0801590:intron 40.0%
AACCAGGAAGAAAACAAAGG+AGG - chr5_3:15641195-15641214 Msa0801590:intron 40.0%
!!! TTCTTTTTGGGGTTGTGTAC+AGG - chr5_3:15641886-15641905 Msa0801590:CDS 40.0%
CAGGTATGAGATCAGAAATC+AGG - chr5_3:15641905-15641924 Msa0801590:CDS 40.0%
!!! TTCTTTTTGGGGTTGTGTAC+AGG - chr5_3:15641886-15641905 Msa0801590:CDS 40.0%
CAGGTATGAGATCAGAAATC+AGG - chr5_3:15641905-15641924 Msa0801590:CDS 40.0%
! AGTCTTGTACCACCAGTATA+CGG + chr5_3:15642799-15642818 None:intergenic 40.0%
! GAGTATCCATCCTGATTTGT+GGG + chr5_3:15642861-15642880 None:intergenic 40.0%
! AGAGTATCCATCCTGATTTG+TGG + chr5_3:15642862-15642881 None:intergenic 40.0%
AGGATTTAATCCTTCCAACC+AGG - chr5_3:15642935-15642954 Msa0801590:intron 40.0%
CTAAAATTACCTGCCAACTC+AGG + chr5_3:15642992-15643011 None:intergenic 40.0%
!! AACTTGTATGATGGGTGAAG+TGG - chr5_3:15643040-15643059 Msa0801590:intron 40.0%
GTTACGAATGGTGATTGTAC+AGG - chr5_3:15643148-15643167 Msa0801590:intron 40.0%
GTACGAGAGATTGATTGAGA+TGG - chr5_3:15643244-15643263 Msa0801590:intron 40.0%
ACATTTCCCTGAAGCAAAGA+TGG + chr5_3:15643326-15643345 None:intergenic 40.0%
GGGTGTAATTTACCTTGTTG+TGG - chr5_3:15643555-15643574 Msa0801590:CDS 40.0%
! TTACCTTGTTGTGGCTACAT+AGG - chr5_3:15643564-15643583 Msa0801590:CDS 40.0%
! TACCTTGTTGTGGCTACATA+GGG - chr5_3:15643565-15643584 Msa0801590:CDS 40.0%
AAAAGGAACGAACGAAGCTC+CGG - chr5_3:15637125-15637144 Msa0801590:three_prime_UTR 45.0%
TTCTACTCGTGATAGCTCGA+CGG + chr5_3:15637159-15637178 None:intergenic 45.0%
GTATGGTAATTTCCCTCTCC+CGG - chr5_3:15637198-15637217 Msa0801590:three_prime_UTR 45.0%
GGTTGGATTGTTGATGCTGA+TGG - chr5_3:15637268-15637287 Msa0801590:three_prime_UTR 45.0%
AAGCAACCATGTTGGAAGGA+GGG + chr5_3:15637315-15637334 None:intergenic 45.0%
AAAGCAACCATGTTGGAAGG+AGG + chr5_3:15637316-15637335 None:intergenic 45.0%
AGGAAAGCAACCATGTTGGA+AGG + chr5_3:15637319-15637338 None:intergenic 45.0%
CACTTGTGAGACTGTTTGAG+AGG + chr5_3:15637629-15637648 None:intergenic 45.0%
GTTGAAAGTCAACCATCTGG+TGG - chr5_3:15638014-15638033 Msa0801590:CDS 45.0%
! GTTCTCAAAGTACCACCAGA+TGG + chr5_3:15638029-15638048 None:intergenic 45.0%
ACACTAGAGAATCAGTCACC+GGG - chr5_3:15638065-15638084 Msa0801590:intron 45.0%
GCAGAAAGGGACTCAAAGAA+TGG - chr5_3:15638140-15638159 Msa0801590:intron 45.0%
CAATTCAACTGACTGCTTGG+AGG - chr5_3:15638187-15638206 Msa0801590:intron 45.0%
! TCACTTAGCGTGTCCTTTTG+AGG - chr5_3:15638780-15638799 Msa0801590:intron 45.0%
!! TGATGGATCCTGAAGGCATT+AGG - chr5_3:15638892-15638911 Msa0801590:intron 45.0%
! GTGTTGTTGTGGATTGTTGG+TGG - chr5_3:15638952-15638971 Msa0801590:intron 45.0%
! GTTGTTGTGGATTGTTGGTG+GGG - chr5_3:15638954-15638973 Msa0801590:intron 45.0%
GGAACTCCCAGAAATATGTG+TGG - chr5_3:15638991-15639010 Msa0801590:intron 45.0%
TCCCAGAAATATGTGTGGTC+TGG - chr5_3:15638996-15639015 Msa0801590:intron 45.0%
CCCAGACCACACATATTTCT+GGG + chr5_3:15639000-15639019 None:intergenic 45.0%
CCCAGAAATATGTGTGGTCT+GGG - chr5_3:15638997-15639016 Msa0801590:intron 45.0%
ACCCAGACCACACATATTTC+TGG + chr5_3:15639001-15639020 None:intergenic 45.0%
ACAGAGAATGTGGCGAAGTA+CGG - chr5_3:15639321-15639340 Msa0801590:intron 45.0%
!! CATTGATTTCCCTCCCACAA+TGG - chr5_3:15639730-15639749 Msa0801590:intron 45.0%
ATCCAAAACCCATTGTGGGA+GGG + chr5_3:15639742-15639761 None:intergenic 45.0%
TATCCAAAACCCATTGTGGG+AGG + chr5_3:15639743-15639762 None:intergenic 45.0%
GACAAAGAGCGAGTTCTCAA+AGG - chr5_3:15639840-15639859 Msa0801590:intron 45.0%
CGAGTTCTCAAAGGAAGAAC+TGG - chr5_3:15639849-15639868 Msa0801590:intron 45.0%
!! AAATTGGTCTGGGAGCATCT+GGG - chr5_3:15640228-15640247 Msa0801590:CDS 45.0%
! CCCTTCCTTTTCAGAAAGGA+TGG - chr5_3:15640262-15640281 Msa0801590:CDS 45.0%
! CCCATCCTTTCTGAAAAGGA+AGG + chr5_3:15640266-15640285 None:intergenic 45.0%
!! TCCTGGTATTGGTGAGTTTC+AGG - chr5_3:15640295-15640314 Msa0801590:CDS 45.0%
ACCTGAAACTCACCAATACC+AGG + chr5_3:15640299-15640318 None:intergenic 45.0%
AAAAGAGTGACCGCGTAGTT+TGG + chr5_3:15640486-15640505 None:intergenic 45.0%
! AACTACGCGGTCACTCTTTT+TGG - chr5_3:15640486-15640505 Msa0801590:intron 45.0%
! ACTACGCGGTCACTCTTTTT+GGG - chr5_3:15640487-15640506 Msa0801590:intron 45.0%
! CTAGAGGACCTGATAATGCT+GGG - chr5_3:15640510-15640529 Msa0801590:intron 45.0%
TTGTAGTGCCCAGCATTATC+AGG + chr5_3:15640521-15640540 None:intergenic 45.0%
AACTCTATGCCACATGAGAC+TGG - chr5_3:15640539-15640558 Msa0801590:CDS 45.0%
! ACTGGATTCTTTTGTGAGCG+AGG - chr5_3:15640557-15640576 Msa0801590:CDS 45.0%
CTGCATGGTCTACTAAAGTC+TGG + chr5_3:15640628-15640647 None:intergenic 45.0%
TGGATGATGTTAGTTGCTGC+TGG - chr5_3:15640766-15640785 Msa0801590:intron 45.0%
ATTGCAAGAGACTGGAAACC+AGG - chr5_3:15641179-15641198 Msa0801590:intron 45.0%
!!! CACCTCCTTTGTTTTCTTCC+TGG + chr5_3:15641200-15641219 None:intergenic 45.0%
GAGTAGCGTTCATCTTCTTC+CGG + chr5_3:15641301-15641320 None:intergenic 45.0%
TCCTACCATAGCGTGGTTAA+CGG - chr5_3:15641650-15641669 Msa0801590:intron 45.0%
!! ACGGAAGTGTTGGATCCATT+TGG - chr5_3:15641669-15641688 Msa0801590:intron 45.0%
!! CGGAAGTGTTGGATCCATTT+GGG - chr5_3:15641670-15641689 Msa0801590:intron 45.0%
ACGACTCAAACTTGTGACTG+AGG - chr5_3:15641722-15641741 Msa0801590:intron 45.0%
GTCAATTCTGCTGCATGACT+AGG + chr5_3:15642822-15642841 None:intergenic 45.0%
CACAATCCCACAAATCAGGA+TGG - chr5_3:15642852-15642871 Msa0801590:intron 45.0%
TGGATACTCTCCTGTGTTTG+AGG - chr5_3:15642872-15642891 Msa0801590:intron 45.0%
! TCATTAGCTTCCTGGTTGGA+AGG + chr5_3:15642948-15642967 None:intergenic 45.0%
! TGACTCATTAGCTTCCTGGT+TGG + chr5_3:15642952-15642971 None:intergenic 45.0%
! CCAATGACTCATTAGCTTCC+TGG + chr5_3:15642956-15642975 None:intergenic 45.0%
CCAGGAAGCTAATGAGTCAT+TGG - chr5_3:15642953-15642972 Msa0801590:intron 45.0%
! GAGTCATTGGTTGATCCAGA+TGG - chr5_3:15642966-15642985 Msa0801590:intron 45.0%
TTAAACTCAGCTTGGGAACG+AGG - chr5_3:15643173-15643192 Msa0801590:intron 45.0%
TAAACTCAGCTTGGGAACGA+GGG - chr5_3:15643174-15643193 Msa0801590:intron 45.0%
CGGTGATCAGGATCATTTCT+GGG + chr5_3:15643275-15643294 None:intergenic 45.0%
CCAGAAATGATCCTGATCAC+CGG - chr5_3:15643273-15643292 Msa0801590:intron 45.0%
!! AATGAAAAGTGCCGGTGATC+AGG + chr5_3:15643287-15643306 None:intergenic 45.0%
TCAGCAACCATCTTTGCTTC+AGG - chr5_3:15643316-15643335 Msa0801590:intron 45.0%
CAGCAACCATCTTTGCTTCA+GGG - chr5_3:15643317-15643336 Msa0801590:intron 45.0%
TTGTGGGTCGAGATCTTGTG+TGG + chr5_3:15636990-15637009 None:intergenic 50.0%
GGGACAAATTCCACCGGAAA+AGG - chr5_3:15637082-15637101 Msa0801590:three_prime_UTR 50.0%
AAAGGAACGAACGAAGCTCC+GGG - chr5_3:15637126-15637145 Msa0801590:three_prime_UTR 50.0%
TTAGCTGGACTCCGTCAGTA+TGG - chr5_3:15637181-15637200 Msa0801590:three_prime_UTR 50.0%
TCATTCATATCAGCACGCGC+CGG + chr5_3:15637220-15637239 None:intergenic 50.0%
! CTTCTGATTGAAGGCGTGTC+CGG - chr5_3:15637367-15637386 Msa0801590:intron 50.0%
! GAAAGCACGAACACAGACAC+CGG + chr5_3:15637389-15637408 None:intergenic 50.0%
! GGAGGCTGATCAGGTGATTT+TGG - chr5_3:15638205-15638224 Msa0801590:intron 50.0%
!! TGCCAGTTGATGGATCCTGA+AGG - chr5_3:15638885-15638904 Msa0801590:intron 50.0%
TGCCTTCAGGATCCATCAAC+TGG + chr5_3:15638890-15638909 None:intergenic 50.0%
!! TGTTGGTGGGGCATTGTTGA+AGG - chr5_3:15638966-15638985 Msa0801590:intron 50.0%
AGAATGTGGCGAAGTACGGA+GGG - chr5_3:15639325-15639344 Msa0801590:intron 50.0%
!! TTCCCTCCCACAATGGGTTT+TGG - chr5_3:15639737-15639756 Msa0801590:intron 50.0%
!! GAAATTGGTCTGGGAGCATC+TGG - chr5_3:15640227-15640246 Msa0801590:CDS 50.0%
!! AATTGGTCTGGGAGCATCTG+GGG - chr5_3:15640229-15640248 Msa0801590:CDS 50.0%
! CCACCCCATCCTTTCTGAAA+AGG + chr5_3:15640270-15640289 None:intergenic 50.0%
! CCTTTTCAGAAAGGATGGGG+TGG - chr5_3:15640267-15640286 Msa0801590:CDS 50.0%
TTTCAGAAAGGATGGGGTGG+AGG - chr5_3:15640270-15640289 Msa0801590:CDS 50.0%
GAAATGGGGCCAAAAGAACG+AGG + chr5_3:15640323-15640342 None:intergenic 50.0%
!! GGTCACTCTTTTTGGGCTAG+AGG - chr5_3:15640494-15640513 Msa0801590:intron 50.0%
! GCTAGAGGACCTGATAATGC+TGG - chr5_3:15640509-15640528 Msa0801590:intron 50.0%
GGTGAAGGATTGCAAGAGAC+TGG - chr5_3:15641171-15641190 Msa0801590:intron 50.0%
ACAAAGCTCCTACCATAGCG+TGG - chr5_3:15641643-15641662 Msa0801590:intron 50.0%
TCCGTTAACCACGCTATGGT+AGG + chr5_3:15641654-15641673 None:intergenic 50.0%
CACTTCCGTTAACCACGCTA+TGG + chr5_3:15641658-15641677 None:intergenic 50.0%
! AGCGTGGTTAACGGAAGTGT+TGG - chr5_3:15641659-15641678 Msa0801590:intron 50.0%
TTGTACCACCAGTATACGGC+AGG + chr5_3:15642795-15642814 None:intergenic 50.0%
CATGCAGCAGAATTGACTGC+AGG - chr5_3:15642825-15642844 Msa0801590:CDS 50.0%
TTGATCCAGATGGCCTGAGT+TGG - chr5_3:15642976-15642995 Msa0801590:intron 50.0%
! GAACGAGGGTTGATCACTTC+TGG - chr5_3:15643188-15643207 Msa0801590:intron 50.0%
CCGGTGATCAGGATCATTTC+TGG + chr5_3:15643276-15643295 None:intergenic 50.0%
ATCCTTGCAGGAGAGATGAC+AGG - chr5_3:15643484-15643503 Msa0801590:intron 50.0%
TCCTTGCAGGAGAGATGACA+GGG - chr5_3:15643485-15643504 Msa0801590:intron 50.0%
GTCCCTATGTAGCCACAACA+AGG + chr5_3:15643570-15643589 None:intergenic 50.0%
GGGGTAAGTAATCGGAGCTG+TGG + chr5_3:15637018-15637037 None:intergenic 55.0%
TAAACGGCGGGGTTGTGGTT+GGG + chr5_3:15637038-15637057 None:intergenic 55.0%
CATTCATATCAGCACGCGCC+GGG + chr5_3:15637219-15637238 None:intergenic 55.0%
TGTTGGAAGGAGGGAGACAC+TGG + chr5_3:15637306-15637325 None:intergenic 55.0%
GTGTCTCCCTCCTTCCAACA+TGG - chr5_3:15637306-15637325 Msa0801590:exon 55.0%
TCCAGGGATCATTTGCCGCA+AGG - chr5_3:15637988-15638007 Msa0801590:CDS 55.0%
ACCTTGCGGCAAATGATCCC+TGG + chr5_3:15637992-15638011 None:intergenic 55.0%
TGACTGCTTGGAGGCTGATC+AGG - chr5_3:15638196-15638215 Msa0801590:intron 55.0%
!! GGATCCTGAAGGCATTAGGC+AGG - chr5_3:15638896-15638915 Msa0801590:intron 55.0%
AGCTCCTGCCTAATGCCTTC+AGG + chr5_3:15638903-15638922 None:intergenic 55.0%
GAGAATGTGGCGAAGTACGG+AGG - chr5_3:15639324-15639343 Msa0801590:intron 55.0%
AGTACGGAGGGCAAACGTAG+TGG - chr5_3:15639337-15639356 Msa0801590:intron 55.0%
!! GGGTGGAGGTATCCTGGTAT+TGG - chr5_3:15640284-15640303 Msa0801590:CDS 55.0%
CTTGTGACTGAGGTTCCCCT+TGG - chr5_3:15641732-15641751 Msa0801590:intron 55.0%
TGCAGGTTCCTGCCGTATAC+TGG - chr5_3:15642784-15642803 Msa0801590:CDS 55.0%
AGGTTCCTGCCGTATACTGG+TGG - chr5_3:15642787-15642806 Msa0801590:CDS 55.0%
TCCCTGTCATCTCTCCTGCA+AGG + chr5_3:15643489-15643508 None:intergenic 55.0%
! CGGAGCTGTGGTCGCTTTGT+GGG + chr5_3:15637006-15637025 None:intergenic 60.0%
! TCGGAGCTGTGGTCGCTTTG+TGG + chr5_3:15637007-15637026 None:intergenic 60.0%
AAACGGCGGGGTTGTGGTTG+GGG + chr5_3:15637037-15637056 None:intergenic 60.0%
GTAAACGGCGGGGTTGTGGT+TGG + chr5_3:15637039-15637058 None:intergenic 60.0%
TGGCGGCGAAGCCACGTAAA+CGG + chr5_3:15637054-15637073 None:intergenic 60.0%
TTTACGTGGCTTCGCCGCCA+CGG - chr5_3:15637054-15637073 Msa0801590:three_prime_UTR 60.0%
GCAGCGGGGACAAATTCCAC+CGG - chr5_3:15637076-15637095 Msa0801590:three_prime_UTR 60.0%
!! TAGCTCGACGGTGTCGTTCC+CGG + chr5_3:15637147-15637166 None:intergenic 60.0%
AGGAGGGAGACACTGGCGAT+AGG + chr5_3:15637299-15637318 None:intergenic 60.0%
!! GGTGGGGCATTGTTGAAGGC+TGG - chr5_3:15638970-15638989 Msa0801590:intron 60.0%
CGGAGGGCAAACGTAGTGGT+TGG - chr5_3:15639341-15639360 Msa0801590:intron 60.0%
!! AGGATGGGGTGGAGGTATCC+TGG - chr5_3:15640278-15640297 Msa0801590:CDS 60.0%
CGCAGAGCTGCCAAACTACG+CGG - chr5_3:15640473-15640492 Msa0801590:intron 60.0%
! TCCAGATGGCCTGAGTTGGC+AGG - chr5_3:15642980-15642999 Msa0801590:intron 60.0%
ACCTGCCAACTCAGGCCATC+TGG + chr5_3:15642984-15643003 None:intergenic 60.0%
CCACGTAAACGGCGGGGTTG+TGG + chr5_3:15637043-15637062 None:intergenic 65.0%
CCACAACCCCGCCGTTTACG+TGG - chr5_3:15637040-15637059 Msa0801590:three_prime_UTR 65.0%
GCGAAGCCACGTAAACGGCG+GGG + chr5_3:15637049-15637068 None:intergenic 65.0%
GGCGAAGCCACGTAAACGGC+GGG + chr5_3:15637050-15637069 None:intergenic 65.0%
CGGCGAAGCCACGTAAACGG+CGG + chr5_3:15637051-15637070 None:intergenic 65.0%
ATTTGTCCCCGCTGCCGTGG+CGG + chr5_3:15637071-15637090 None:intergenic 65.0%
GGAATTTGTCCCCGCTGCCG+TGG + chr5_3:15637074-15637093 None:intergenic 65.0%
TATCAGCACGCGCCGGGAGA+GGG + chr5_3:15637213-15637232 None:intergenic 65.0%
ATATCAGCACGCGCCGGGAG+AGG + chr5_3:15637214-15637233 None:intergenic 65.0%
CTCTCGCGCGTGAAGCTGGT+TGG - chr5_3:15637251-15637270 Msa0801590:three_prime_UTR 65.0%
GCTGCTCTCGCGCGTGAAGC+TGG - chr5_3:15637247-15637266 Msa0801590:three_prime_UTR 70.0%
TGGCTTCGCCGCCACGGCAG+CGG - chr5_3:15637060-15637079 Msa0801590:three_prime_UTR 75.0%
! GGCTTCGCCGCCACGGCAGC+GGG - chr5_3:15637061-15637080 Msa0801590:three_prime_UTR 80.0%
! GCTTCGCCGCCACGGCAGCG+GGG - chr5_3:15637062-15637081 Msa0801590:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 15636959 15643879 15636959 ID=Msa0801590;Name=Msa0801590
chr5_3 mRNA 15636959 15643879 15636959 ID=Msa0801590-mRNA-1;Parent=Msa0801590;Name=Msa0801590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.88|0.8|1|1|1|10|363|648
chr5_3 exon 15636959 15637344 15636959 ID=Msa0801590-mRNA-1:exon:6489;Parent=Msa0801590-mRNA-1
chr5_3 exon 15637452 15637668 15637452 ID=Msa0801590-mRNA-1:exon:6488;Parent=Msa0801590-mRNA-1
chr5_3 exon 15637837 15638049 15637837 ID=Msa0801590-mRNA-1:exon:6487;Parent=Msa0801590-mRNA-1
chr5_3 exon 15640135 15640395 15640135 ID=Msa0801590-mRNA-1:exon:6486;Parent=Msa0801590-mRNA-1
chr5_3 exon 15640522 15640686 15640522 ID=Msa0801590-mRNA-1:exon:6485;Parent=Msa0801590-mRNA-1
chr5_3 exon 15640960 15641154 15640960 ID=Msa0801590-mRNA-1:exon:6484;Parent=Msa0801590-mRNA-1
chr5_3 exon 15641771 15641974 15641771 ID=Msa0801590-mRNA-1:exon:6483;Parent=Msa0801590-mRNA-1
chr5_3 exon 15642150 15642230 15642150 ID=Msa0801590-mRNA-1:exon:6482;Parent=Msa0801590-mRNA-1
chr5_3 exon 15642621 15642859 15642621 ID=Msa0801590-mRNA-1:exon:6481;Parent=Msa0801590-mRNA-1
chr5_3 exon 15643531 15643879 15643531 ID=Msa0801590-mRNA-1:exon:6480;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15643531 15643879 15643531 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15642621 15642859 15642621 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15642150 15642230 15642150 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15641771 15641974 15641771 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15640960 15641154 15640960 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15640522 15640686 15640522 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15640135 15640395 15640135 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15637837 15638049 15637837 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15637452 15637668 15637452 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 CDS 15637322 15637344 15637322 ID=Msa0801590-mRNA-1:cds;Parent=Msa0801590-mRNA-1
chr5_3 three_prime_UTR 15636959 15637321 15636959 ID=Msa0801590-mRNA-1:three_prime_utr;Parent=Msa0801590-mRNA-1
Gene Sequence

>Msa0801590

ATGAAGAACACAACCGAAGATGCTACTTCCACACAAGATCTCGACCCACAAAGCGACCACAGCTCCGATTACTTACCCCAACCACAACCCCGCCGTTTACGTGGCTTCGCCGCCACGGCAGCGGGGACAAATTCCACCGGAAAAGGAAAAAAAGAGCGAGAGAAAGAAAAGGAACGAACGAAGCTCCGGGAACGACACCGTCGAGCTATCACGAGTAGAATGTTAGCTGGACTCCGTCAGTATGGTAATTTCCCTCTCCCGGCGCGTGCTGATATGAATGATGTACTTGCTGCTCTCGCGCGTGAAGCTGGTTGGATTGTTGATGCTGATGGAACTACCTATCGCCAGTGTTTTATTATCCAGGGATCATTTGCCGCAAGGTCAGTTGAAAGTCAACCATCTGGTGGTACTTTGAGAACTTGTTCGGTTAAGGAAACACTAGAGAATCAGTCACCGGGACTTAGAGTTGATGAATGTGTGTCACCTGCATCTATTGATTCTGTTTTAATTGCAGAAAGGGACTCAAAGAATGGAAACTATGCAAGTGTAAGCCCAATCAATTCAACTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTCAATTGCACACCATATGTTCCTGTTTACATAAAACTCCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATGGATCCTGAAGGCATTAGGCAGGAGCTAATCCATATTAAGTCCTTAAATATTGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAACTCCCAGAAATATGTGTGGTCTGGGTATAGGGAGCTTTTTAGTATAATTAGAGAATTCAAGCTGAATATACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGACATATTTTTCACAGATCGTGAAGGACGGCGAAATACTGAATGCCTATCTTGGGGAATTGACAAAGAGCGAGTTCTCAAAGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTATGATTGATGCTGTAGAAATTGGTCTGGGAGCATCTGGGGAGCTGAAATACCCTTCCTTTTCAGAAAGGATGGGGTGGAGGTATCCTGGTATTGGTGAGTTTCAGTGCTATGATAAATACTTGCAACATAGTCTGCGCAGAGCTGCCAAACTACGCGGTCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGGCACTACAACTCTATGCCACATGAGACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACTTTAGTAGACCATGCAGATAATGTTTTGTCTCTTGCAAACCTTGCTTTTGAGGGAACAAAAATTATTGTCAAGGTTCCTGCCGTATACTGGTGGTACAAGACTCCTAGTCATGCAGCAGAATTGACTGCAGGATATCACAATCCCACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAAAAAACACGCTGTCACCATGAAATTTGTCTGCTTAGGATTTAATCCTTCCAACCAGGAAGCTAATGAGTCATTGGTTGATCCAGATGGCCTGAGTTGGCAGGTATTAAACTCAGCTTGGGAACGAGGGTTGATCACTTCTGGAGAGAATGCAATCTTTTGCTATGATAGAGAAAGGTACGAGAGATTGATTGAGATGGCAAAGCCCAGAAATGATCCTGATCACCGGCACTTTTCATTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGCCTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGGAGAGATGACAGGGAATCTTTAA

Protein sequence

>Msa0801590

MKNTTEDATSTQDLDPQSDHSSDYLPQPQPRRLRGFAATAAGTNSTGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYRQCFIIQGSFAARSVESQPSGGTLRTCSVKETLENQSPGLRVDECVSPASIDSVLIAERDSKNGNYASVSPINSTDCLEADQLMQDIHSGVHENDFNCTPYVPVYIKLPAGIINKFCQLMDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWNSQKYVWSGYRELFSIIREFKLNIQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGMIDAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLVDHADNVLSLANLAFEGTKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFNPSNQEANESLVDPDGLSWQVLNSAWERGLITSGENAIFCYDRERYERLIEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGNL*