Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802220 | XP_003612622.1 | 92.145 | 331 | 19 | 1 | 1 | 331 | 1 | 324 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802220 | sp|Q6AWY4|GRF5_ORYSJ | 35.758 | 330 | 156 | 9 | 17 | 317 | 25 | 327 | 1.66e-44 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802220 | G7K6W0 | 92.145 | 331 | 19 | 1 | 1 | 331 | 1 | 324 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0802220 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802220 | MtrunA17_Chr5g0409471 | 92.145 | 331 | 19 | 1 | 1 | 331 | 1 | 324 | 0.0 | 587 |
| Msa0802220 | MtrunA17_Chr4g0021261 | 48.571 | 210 | 74 | 9 | 16 | 212 | 25 | 213 | 2.92e-49 | 167 |
| Msa0802220 | MtrunA17_Chr4g0070591 | 33.824 | 272 | 151 | 6 | 16 | 259 | 9 | 279 | 4.21e-43 | 152 |
| Msa0802220 | MtrunA17_Chr2g0300511 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.66e-40 | 145 |
| Msa0802220 | MtrunA17_Chr8g0343881 | 58.333 | 108 | 33 | 2 | 17 | 112 | 12 | 119 | 2.44e-39 | 142 |
| Msa0802220 | MtrunA17_Chr1g0152191 | 56.897 | 116 | 34 | 2 | 16 | 115 | 144 | 259 | 1.12e-36 | 139 |
| Msa0802220 | MtrunA17_Chr7g0265931 | 62.037 | 108 | 29 | 4 | 17 | 112 | 79 | 186 | 1.34e-35 | 132 |
| Msa0802220 | MtrunA17_Chr3g0127641 | 50.459 | 109 | 46 | 2 | 14 | 121 | 110 | 211 | 4.38e-27 | 111 |
| Msa0802220 | MtrunA17_Chr8g0351521 | 45.794 | 107 | 42 | 3 | 15 | 114 | 53 | 150 | 9.35e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802220 | AT3G13960.1 | 57.273 | 110 | 35 | 2 | 15 | 112 | 15 | 124 | 1.26e-38 | 141 |
| Msa0802220 | AT4G37740.1 | 40.976 | 205 | 96 | 6 | 16 | 201 | 164 | 362 | 5.91e-38 | 142 |
| Msa0802220 | AT3G52910.1 | 56.250 | 112 | 33 | 3 | 17 | 112 | 83 | 194 | 2.92e-33 | 127 |
| Msa0802220 | AT2G36400.1 | 54.783 | 115 | 37 | 3 | 17 | 116 | 77 | 191 | 3.76e-33 | 127 |
| Msa0802220 | AT2G22840.1 | 54.128 | 109 | 36 | 2 | 16 | 112 | 133 | 239 | 6.35e-31 | 122 |
| Msa0802220 | AT2G06200.2 | 50.400 | 125 | 39 | 3 | 9 | 110 | 38 | 162 | 1.89e-30 | 117 |
| Msa0802220 | AT2G06200.1 | 52.066 | 121 | 35 | 3 | 13 | 110 | 3 | 123 | 2.84e-30 | 115 |
| Msa0802220 | AT4G24150.3 | 43.066 | 137 | 58 | 3 | 17 | 137 | 112 | 244 | 6.04e-24 | 102 |
| Msa0802220 | AT4G24150.2 | 43.066 | 137 | 58 | 3 | 17 | 137 | 150 | 282 | 1.20e-23 | 101 |
| Msa0802220 | AT5G53660.1 | 46.364 | 110 | 54 | 1 | 16 | 125 | 59 | 163 | 1.49e-22 | 97.1 |
| Msa0802220 | AT4G24150.1 | 35.802 | 162 | 59 | 2 | 17 | 137 | 150 | 307 | 2.50e-21 | 94.7 |
| Msa0802220 | AT2G06200.3 | 72.917 | 48 | 11 | 1 | 65 | 110 | 4 | 51 | 6.53e-17 | 77.8 |
| Msa0802220 | AT2G45480.2 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 6.95e-17 | 80.5 |
| Msa0802220 | AT2G45480.1 | 39.815 | 108 | 51 | 2 | 15 | 109 | 21 | 127 | 2.39e-16 | 79.7 |
| Msa0802220 | AT2G45480.1 | 34.545 | 110 | 59 | 3 | 21 | 130 | 269 | 365 | 3.26e-13 | 70.5 |
| Msa0802220 | AT2G45480.3 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 2.41e-16 | 79.7 |
| Msa0802220 | AT2G45480.3 | 34.545 | 110 | 59 | 3 | 21 | 130 | 271 | 367 | 3.59e-13 | 70.5 |
Find 108 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGCTTCTTCCTCTTC+AGG | 0.174652 | 5_3:-16406427 | Msa0802220:CDS |
| CTTCTACACCTACCTGGTTC+TGG | 0.179105 | 5_3:+16406774 | None:intergenic |
| AATGCAACAAATCAAGAAAA+AGG | 0.318694 | 5_3:+16404082 | None:intergenic |
| AAGGAATTGGTGGTGAATTA+AGG | 0.321303 | 5_3:+16407302 | None:intergenic |
| TTTGTTTCAGTGGGTTATTA+TGG | 0.331715 | 5_3:-16406810 | Msa0802220:intron |
| TTCTACACCTACCTGGTTCT+GGG | 0.343240 | 5_3:+16406775 | None:intergenic |
| GGTGAGGGAGGAGGAAAGGG+TGG | 0.357595 | 5_3:+16407232 | None:intergenic |
| TTCCTAGATCCTTCTGTAAG+AGG | 0.359958 | 5_3:+16404615 | None:intergenic |
| GAAGGTTTAAGTTTCAATCT+TGG | 0.362165 | 5_3:-16406471 | Msa0802220:CDS |
| CCTATGCTTCTTCCTCTTCA+GGG | 0.369011 | 5_3:-16406426 | Msa0802220:CDS |
| AAGGTTTAAGTTTCAATCTT+GGG | 0.373864 | 5_3:-16406470 | Msa0802220:CDS |
| GATGTTCTAGCTCTTGCCAT+TGG | 0.387285 | 5_3:+16407011 | None:intergenic |
| TCCAAGGAAATTGTCTTTAA+CGG | 0.387679 | 5_3:-16404416 | Msa0802220:CDS |
| ATTACCAATGATGGCTCAAC+TGG | 0.388761 | 5_3:-16407275 | Msa0802220:five_prime_UTR |
| ATTGGTAATGGAAAAGGAAT+TGG | 0.390276 | 5_3:+16407289 | None:intergenic |
| TTTCAATCAACATTGACATC+TGG | 0.399287 | 5_3:+16404269 | None:intergenic |
| TGAGGGAGGAGGAAAGGGTG+GGG | 0.407542 | 5_3:+16407234 | None:intergenic |
| CCTCCTCTGCAATGGAGTAT+AGG | 0.408064 | 5_3:-16404316 | Msa0802220:CDS |
| ATGTTCTAGCTCTTGCCATT+GGG | 0.417081 | 5_3:+16407012 | None:intergenic |
| GCCGTTAAAGACAATTTCCT+TGG | 0.422082 | 5_3:+16404415 | None:intergenic |
| CTCTCTTCAGTGACTGGCAG+TGG | 0.424103 | 5_3:-16404352 | Msa0802220:CDS |
| GTTCTCTTGTTGTTCGCTGT+TGG | 0.429758 | 5_3:+16404468 | None:intergenic |
| AGGGTTCTAAGAAACCTTAT+AGG | 0.432493 | 5_3:-16406407 | Msa0802220:intron |
| GGTGGTGAGGGAGGAGGAAA+GGG | 0.438231 | 5_3:+16407229 | None:intergenic |
| CTCAGTCTCTCTTCAGTGAC+TGG | 0.441726 | 5_3:-16404358 | Msa0802220:CDS |
| CCAGCTAGGTAGTTTGAAAC+AGG | 0.443147 | 5_3:-16404393 | Msa0802220:CDS |
| CTTGGTGCTGGTGGTTCTAG+TGG | 0.451681 | 5_3:-16406573 | Msa0802220:CDS |
| GTGAGGGAGGAGGAAAGGGT+GGG | 0.452048 | 5_3:+16407233 | None:intergenic |
| ACACTTCCTTTGCATACAAA+TGG | 0.453684 | 5_3:-16406501 | Msa0802220:CDS |
| GGGTGGGGAGCTTACCTTGG+AGG | 0.455392 | 5_3:+16407249 | None:intergenic |
| CGGTCACAGTACTTAGAATC+AGG | 0.455848 | 5_3:+16406711 | None:intergenic |
| GCCATCATTGGTAATGGAAA+AGG | 0.471068 | 5_3:+16407283 | None:intergenic |
| CAAACACTGTTTCAGAATCA+AGG | 0.474671 | 5_3:-16404523 | Msa0802220:CDS |
| TGATGTTGAAAAGACTTCAT+AGG | 0.476193 | 5_3:+16404207 | None:intergenic |
| TGGTGGTGAGGGAGGAGGAA+AGG | 0.477718 | 5_3:+16407228 | None:intergenic |
| ATCTTCAAGTATCTCAAAGC+TGG | 0.478992 | 5_3:-16406980 | Msa0802220:CDS |
| GGTTATGACTTCACTTCAGA+TGG | 0.481110 | 5_3:-16404578 | Msa0802220:CDS |
| CGAATAGGTAAAAGGAGGTC+AGG | 0.485852 | 5_3:+16406944 | None:intergenic |
| TTGGTGTTAAAATCCTTGCT+TGG | 0.489894 | 5_3:+16404293 | None:intergenic |
| ATCAAGGAATTGTTCTTCCA+TGG | 0.491166 | 5_3:-16404507 | Msa0802220:CDS |
| AGTTGAGCCATCATTGGTAA+TGG | 0.495572 | 5_3:+16407277 | None:intergenic |
| GGAGGTTGTGATGGTGGTGA+GGG | 0.498640 | 5_3:+16407217 | None:intergenic |
| ATCAACATTGACATCTGGAT+TGG | 0.498766 | 5_3:+16404274 | None:intergenic |
| TGTGATGGTGGTGAGGGAGG+AGG | 0.499380 | 5_3:+16407223 | None:intergenic |
| AACCTCTTACAGAAGGATCT+AGG | 0.500686 | 5_3:-16404617 | Msa0802220:CDS |
| CGGAGGTTGTGATGGTGGTG+AGG | 0.503455 | 5_3:+16407216 | None:intergenic |
| GGTTGTGATGGTGGTGAGGG+AGG | 0.510123 | 5_3:+16407220 | None:intergenic |
| GAAACCAGTTGAGCCATCAT+TGG | 0.510967 | 5_3:+16407271 | None:intergenic |
| CTAGGAACTGTGAAGTATCA+AGG | 0.513671 | 5_3:-16404599 | Msa0802220:CDS |
| ATTCCACAGGCTTTCTTGAA+CGG | 0.519412 | 5_3:+16406667 | None:intergenic |
| GGCTCAACTGGTTTCCTCCA+AGG | 0.520670 | 5_3:-16407263 | Msa0802220:five_prime_UTR |
| CCCTGAAGAGGAAGAAGCAT+AGG | 0.524973 | 5_3:+16406426 | None:intergenic |
| CCTGTTTCAAACTACCTAGC+TGG | 0.525039 | 5_3:+16404393 | None:intergenic |
| GCGTCGAGGTTAAACAGCTC+AGG | 0.529759 | 5_3:+16404446 | None:intergenic |
| ATTGTCTTTAACGGCCAGCT+AGG | 0.529877 | 5_3:-16404407 | Msa0802220:CDS |
| ACTTCACAGCAACTTGGTGC+TGG | 0.533655 | 5_3:-16406585 | Msa0802220:CDS |
| CATACAAATGGTACTCGTGA+AGG | 0.534280 | 5_3:-16406489 | Msa0802220:CDS |
| AAAGGGTGGGGAGCTTACCT+TGG | 0.537010 | 5_3:+16407246 | None:intergenic |
| TCTGTTCTTCTACACCTACC+TGG | 0.541473 | 5_3:+16406768 | None:intergenic |
| CGAGTACCATTTGTATGCAA+AGG | 0.542113 | 5_3:+16406495 | None:intergenic |
| TCACAGCAACTTGGTGCTGG+TGG | 0.545124 | 5_3:-16406582 | Msa0802220:CDS |
| TAATAGGTTTGGACTGAACT+CGG | 0.548879 | 5_3:-16404654 | Msa0802220:intron |
| CCTATACTCCATTGCAGAGG+AGG | 0.551750 | 5_3:+16404316 | None:intergenic |
| TGGGAACACCATGCCCCACA+TGG | 0.552810 | 5_3:-16406451 | Msa0802220:CDS |
| ACAGTAGGAAAATTGAAGCT+TGG | 0.552947 | 5_3:+16404173 | None:intergenic |
| AGTACTACTTCACAGCAACT+TGG | 0.553505 | 5_3:-16406591 | Msa0802220:CDS |
| CATAGGGTCCATGTGGGGCA+TGG | 0.558053 | 5_3:+16406443 | None:intergenic |
| AGATTTAGCCTCCTCTGCAA+TGG | 0.559132 | 5_3:-16404324 | Msa0802220:CDS |
| AGAAGGATTGAATCTAGAAG+AGG | 0.561615 | 5_3:+16407144 | None:intergenic |
| TTCAACAACCGCCGTTGATG+TGG | 0.565403 | 5_3:-16407063 | Msa0802220:CDS |
| TGCCATTGGGAGACTGTGAA+CGG | 0.571539 | 5_3:+16407025 | None:intergenic |
| TACAGAGACGGAGGTTGTGA+TGG | 0.577085 | 5_3:+16407208 | None:intergenic |
| ACTTCACTTCAGATGGGATG+TGG | 0.577262 | 5_3:-16404571 | Msa0802220:CDS |
| CCTCGACGCTGCAAGATCCA+AGG | 0.587152 | 5_3:-16404432 | Msa0802220:CDS |
| TCCTACTGTTCACTTGAAGG+AGG | 0.592033 | 5_3:-16404159 | Msa0802220:three_prime_UTR |
| CCTTGGATCTTGCAGCGTCG+AGG | 0.593781 | 5_3:+16404432 | None:intergenic |
| GGTAATGGAAAAGGAATTGG+TGG | 0.601680 | 5_3:+16407292 | None:intergenic |
| TGGACTGAACTCGGAAGCAG+AGG | 0.606816 | 5_3:-16404645 | Msa0802220:CDS |
| TCCTCCTTCAAGTGAACAGT+AGG | 0.608836 | 5_3:+16404158 | None:intergenic |
| GAAGAAGAAGAAGATTCCAC+AGG | 0.609396 | 5_3:+16406654 | None:intergenic |
| GTTATGACTTCACTTCAGAT+GGG | 0.610905 | 5_3:-16404577 | Msa0802220:CDS |
| CACCGTTCACAGTCTCCCAA+TGG | 0.611493 | 5_3:-16407027 | Msa0802220:CDS |
| ATAGAGAGAAATTACAGAGA+CGG | 0.614970 | 5_3:+16407196 | None:intergenic |
| GGAGAACAACCTCTTACAGA+AGG | 0.617644 | 5_3:-16404624 | Msa0802220:CDS |
| ACTGTGAACGGTGGATGAGT+TGG | 0.621139 | 5_3:+16407037 | None:intergenic |
| TGTGAAGATGATGAAGAAGA+AGG | 0.624765 | 5_3:+16407127 | None:intergenic |
| GGTAGGTGTAGAAGAACAGA+TGG | 0.627953 | 5_3:-16406765 | Msa0802220:CDS |
| GAGAGAAATTACAGAGACGG+AGG | 0.628971 | 5_3:+16407199 | None:intergenic |
| GGTTTCTTAGAACCCTGAAG+AGG | 0.629209 | 5_3:+16406414 | None:intergenic |
| CCTGAAGAGGAAGAAGCATA+GGG | 0.630158 | 5_3:+16406427 | None:intergenic |
| GTCACTGAAGAGAGACTGAG+AGG | 0.630803 | 5_3:+16404361 | None:intergenic |
| AAGAAGCATAGGGTCCATGT+GGG | 0.631241 | 5_3:+16406437 | None:intergenic |
| GAAGAAGCATAGGGTCCATG+TGG | 0.633928 | 5_3:+16406436 | None:intergenic |
| TGAGTTGGTGACCACATCAA+CGG | 0.634344 | 5_3:+16407052 | None:intergenic |
| GAATTGGTGGTGAATTAAGG+AGG | 0.638839 | 5_3:+16407305 | None:intergenic |
| GAAGTTGTAGTTGTCAACCA+TGG | 0.647831 | 5_3:+16404490 | None:intergenic |
| TTACCGTTCAAGAAAGCCTG+TGG | 0.651222 | 5_3:-16406670 | Msa0802220:CDS |
| AATGGAGTATAGGCCAAGCA+AGG | 0.658290 | 5_3:-16404306 | Msa0802220:CDS |
| AGAGACGGAGGTTGTGATGG+TGG | 0.666617 | 5_3:+16407211 | None:intergenic |
| AAATTGACCCAGAACCAGGT+AGG | 0.671324 | 5_3:-16406782 | Msa0802220:CDS |
| TGGCCTATACTCCATTGCAG+AGG | 0.676725 | 5_3:+16404313 | None:intergenic |
| TAGACACATGGTGTGATGTG+TGG | 0.686427 | 5_3:-16404013 | Msa0802220:three_prime_UTR |
| TCTTGTGATTGTTAGACACA+TGG | 0.695821 | 5_3:-16404025 | Msa0802220:three_prime_UTR |
| ATAGGTAAAAGGAGGTCAGG+AGG | 0.695933 | 5_3:+16406947 | None:intergenic |
| AACGACGTCGAATCATATGA+CGG | 0.698475 | 5_3:+16406691 | None:intergenic |
| AGAAGCATAGGGTCCATGTG+GGG | 0.720767 | 5_3:+16406438 | None:intergenic |
| CATTGGGAGACTGTGAACGG+TGG | 0.744499 | 5_3:+16407028 | None:intergenic |
| GTTGGTGACCACATCAACGG+CGG | 0.749963 | 5_3:+16407055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTACTTTTTATA+AGG | - | chr5_3:16406318-16406337 | Msa0802220:intron | 10.0% |
| !!! | TTTTATATCTTTATGTTAGA+TGG | - | chr5_3:16405176-16405195 | Msa0802220:intron | 15.0% |
| !!! | ATACTTTATTTTATTCAACT+TGG | - | chr5_3:16405347-16405366 | Msa0802220:intron | 15.0% |
| !! | CAAATAGATATAAAATGAAA+TGG | + | chr5_3:16405920-16405939 | None:intergenic | 15.0% |
| !!! | CATTTCATTTTATATCTATT+TGG | - | chr5_3:16405918-16405937 | Msa0802220:intron | 15.0% |
| !!! | TGATATGATTTTTTAATTCT+AGG | - | chr5_3:16405941-16405960 | Msa0802220:intron | 15.0% |
| !!! | GTTTATTCTTTACTTTTAAA+TGG | - | chr5_3:16406039-16406058 | Msa0802220:intron | 15.0% |
| !! | AAAAAAGAAAAAAAGAGAAA+TGG | - | chr5_3:16406253-16406272 | Msa0802220:intron | 15.0% |
| !!! | GGATATTAATATTTTTATGA+AGG | - | chr5_3:16406367-16406386 | Msa0802220:intron | 15.0% |
| !!! | TATTAATATTTTTATGAAGG+TGG | - | chr5_3:16406370-16406389 | Msa0802220:intron | 15.0% |
| !! | ATCAAAATAGAGACAAAATA+AGG | + | chr5_3:16404386-16404405 | None:intergenic | 20.0% |
| !! | AAAAAAGAAACATACCTATA+AGG | + | chr5_3:16404857-16404876 | None:intergenic | 20.0% |
| !!! | TGTTTCTTTTGTTTTCAATA+AGG | - | chr5_3:16404887-16404906 | Msa0802220:intron | 20.0% |
| !! | AATCAATTGTGTAAACAAAA+AGG | + | chr5_3:16405158-16405177 | None:intergenic | 20.0% |
| !! | TGCAGAAATAATTACTTAAT+CGG | - | chr5_3:16405390-16405409 | Msa0802220:intron | 20.0% |
| !! | ATCGAATAAATAATGTGAAA+AGG | + | chr5_3:16405524-16405543 | None:intergenic | 20.0% |
| !!! | ACTTTTTATAAGGAATTTGT+AGG | - | chr5_3:16406328-16406347 | Msa0802220:intron | 20.0% |
| !! | CAAGTAGTTAAAAAAAATGA+TGG | - | chr5_3:16407275-16407294 | Msa0802220:five_prime_UTR | 20.0% |
| !!! | TTTTGTTTTTGGGGTTTTTA+AGG | + | chr5_3:16404155-16404174 | None:intergenic | 25.0% |
| !!! | ATGCTCATGTTTTTGTTTTT+GGG | + | chr5_3:16404165-16404184 | None:intergenic | 25.0% |
| !!! | AATGCTCATGTTTTTGTTTT+TGG | + | chr5_3:16404166-16404185 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTTTGTTTCAG+TGG | - | chr5_3:16404427-16404446 | Msa0802220:CDS | 25.0% |
| !!! | TTTGTGATTTTTGTTTCAGT+GGG | - | chr5_3:16404428-16404447 | Msa0802220:CDS | 25.0% |
| !! | AAGGTTTAAGTTTCAATCTT+GGG | - | chr5_3:16404777-16404796 | Msa0802220:intron | 25.0% |
| !! | ATGTTTGTGTATTTGTGTTT+TGG | - | chr5_3:16405058-16405077 | Msa0802220:intron | 25.0% |
| !! | TGTTTGTGTATTTGTGTTTT+GGG | - | chr5_3:16405059-16405078 | Msa0802220:intron | 25.0% |
| ! | TTTATGTTAGATGGAAAACA+TGG | - | chr5_3:16405185-16405204 | Msa0802220:intron | 25.0% |
| ! | GCAGAAATAATTACTTAATC+GGG | - | chr5_3:16405391-16405410 | Msa0802220:intron | 25.0% |
| ! | AATAATTACTTAATCGGGTT+TGG | - | chr5_3:16405396-16405415 | Msa0802220:intron | 25.0% |
| ! | ATTTCAAATGACCATCAAAA+AGG | + | chr5_3:16405452-16405471 | None:intergenic | 25.0% |
| ! | TTTGATAAGATTGGAAATCA+AGG | - | chr5_3:16405594-16405613 | Msa0802220:intron | 25.0% |
| ! | TTGATAAGATTGGAAATCAA+GGG | - | chr5_3:16405595-16405614 | Msa0802220:intron | 25.0% |
| ! | TGATAGAGTTAAAGCAATTA+AGG | - | chr5_3:16405673-16405692 | Msa0802220:intron | 25.0% |
| ! | TTAAGACTAAAGACAAATGT+CGG | + | chr5_3:16405726-16405745 | None:intergenic | 25.0% |
| ! | GATAACATGTTGAAGAAATT+TGG | - | chr5_3:16405887-16405906 | Msa0802220:intron | 25.0% |
| !!! | TTGTTTTTTTTTCCTTTTCC+TGG | - | chr5_3:16406141-16406160 | Msa0802220:intron | 25.0% |
| !!! | AATGGATTAAACATTATAGC+AGG | - | chr5_3:16406271-16406290 | Msa0802220:intron | 25.0% |
| !!! | TGAATTGAGTTGAATCATTA+AGG | + | chr5_3:16406424-16406443 | None:intergenic | 25.0% |
| ! | TAATGATTCAACTCAATTCA+TGG | - | chr5_3:16406424-16406443 | Msa0802220:CDS | 25.0% |
| !!! | TCAAGTATTTTAGAAGTTGT+TGG | - | chr5_3:16406505-16406524 | Msa0802220:CDS | 25.0% |
| ! | AATGCAACAAATCAAGAAAA+AGG | + | chr5_3:16407168-16407187 | None:intergenic | 25.0% |
| !! | ATTGGTAATGGAAAAGGAAT+TGG | + | chr5_3:16403961-16403980 | None:intergenic | 30.0% |
| ATAGAGAGAAATTACAGAGA+CGG | + | chr5_3:16404054-16404073 | None:intergenic | 30.0% | |
| !!! | TGCTCATGTTTTTGTTTTTG+GGG | + | chr5_3:16404164-16404183 | None:intergenic | 30.0% |
| ! | AATTGAAGACTTTTCCGAAT+AGG | + | chr5_3:16404321-16404340 | None:intergenic | 30.0% |
| TAAGGAAGATTAACGTTGTT+GGG | + | chr5_3:16404368-16404387 | None:intergenic | 30.0% | |
| ATAAGGAAGATTAACGTTGT+TGG | + | chr5_3:16404369-16404388 | None:intergenic | 30.0% | |
| !! | TTTGTTTCAGTGGGTTATTA+TGG | - | chr5_3:16404437-16404456 | Msa0802220:CDS | 30.0% |
| ! | GAAGGTTTAAGTTTCAATCT+TGG | - | chr5_3:16404776-16404795 | Msa0802220:intron | 30.0% |
| ! | TTTTGTATAACCCTCTTGTT+CGG | - | chr5_3:16404923-16404942 | Msa0802220:intron | 30.0% |
| ! | GTTTGTGTATTTGTGTTTTG+GGG | - | chr5_3:16405060-16405079 | Msa0802220:intron | 30.0% |
| TAACTCTTCACAAGAAATCA+TGG | + | chr5_3:16405120-16405139 | None:intergenic | 30.0% | |
| AAGTTACATAACATGTGATG+TGG | - | chr5_3:16405221-16405240 | Msa0802220:intron | 30.0% | |
| !! | AAATCATGACTTGGTATTCT+GGG | - | chr5_3:16405468-16405487 | Msa0802220:intron | 30.0% |
| CACATTATTTATTCGATACC+TGG | - | chr5_3:16405527-16405546 | Msa0802220:intron | 30.0% | |
| TAGTTCACTCACATCTAAAA+AGG | + | chr5_3:16405563-16405582 | None:intergenic | 30.0% | |
| ATTGGAAATCAAGGGAATTA+TGG | - | chr5_3:16405603-16405622 | Msa0802220:intron | 30.0% | |
| ! | TACTTGATGATTATCCAGAA+AGG | - | chr5_3:16405834-16405853 | Msa0802220:intron | 30.0% |
| ! | ACTTGATGATTATCCAGAAA+GGG | - | chr5_3:16405835-16405854 | Msa0802220:intron | 30.0% |
| TGTCATTGATACTATGTAGA+TGG | - | chr5_3:16406179-16406198 | Msa0802220:intron | 30.0% | |
| AGTTGAATCATTAAGGCTTA+AGG | + | chr5_3:16406417-16406436 | None:intergenic | 30.0% | |
| AAATTGCAAAAGACTACATG+TGG | + | chr5_3:16406480-16406499 | None:intergenic | 30.0% | |
| AACTGAACACACTCAATAAT+AGG | - | chr5_3:16406577-16406596 | Msa0802220:CDS | 30.0% | |
| AACACACTCAATAATAGGTT+TGG | - | chr5_3:16406582-16406601 | Msa0802220:CDS | 30.0% | |
| TCCAAGGAAATTGTCTTTAA+CGG | - | chr5_3:16406831-16406850 | Msa0802220:intron | 30.0% | |
| TTTCAATCAACATTGACATC+TGG | + | chr5_3:16406981-16407000 | None:intergenic | 30.0% | |
| TGATGTTGAAAAGACTTCAT+AGG | + | chr5_3:16407043-16407062 | None:intergenic | 30.0% | |
| ! | ATGAAGTCTTTTCAACATCA+TGG | - | chr5_3:16407043-16407062 | Msa0802220:CDS | 30.0% |
| !! | AAGGAATTGGTGGTGAATTA+AGG | + | chr5_3:16403948-16403967 | None:intergenic | 35.0% |
| ! | TCCTTTTCCATTACCAATGA+TGG | - | chr5_3:16403963-16403982 | Msa0802220:three_prime_UTR | 35.0% |
| AGAAGGATTGAATCTAGAAG+AGG | + | chr5_3:16404106-16404125 | None:intergenic | 35.0% | |
| TGTGAAGATGATGAAGAAGA+AGG | + | chr5_3:16404123-16404142 | None:intergenic | 35.0% | |
| ATCTTCAAGTATCTCAAAGC+TGG | - | chr5_3:16404267-16404286 | Msa0802220:exon | 35.0% | |
| ! | TTTTCCGAATAGGTAAAAGG+AGG | + | chr5_3:16404311-16404330 | None:intergenic | 35.0% |
| ! | GACTTTTCCGAATAGGTAAA+AGG | + | chr5_3:16404314-16404333 | None:intergenic | 35.0% |
| AAAAAAATTGACCCAGAACC+AGG | - | chr5_3:16404461-16404480 | Msa0802220:CDS | 35.0% | |
| GAAGAACAGATGGCAAAAAA+TGG | - | chr5_3:16404492-16404511 | Msa0802220:CDS | 35.0% | |
| CAAAAAATGGAGATGTGCTA+GGG | - | chr5_3:16404505-16404524 | Msa0802220:CDS | 35.0% | |
| ACACTTCCTTTGCATACAAA+TGG | - | chr5_3:16404746-16404765 | Msa0802220:intron | 35.0% | |
| !! | AGGGTTCTAAGAAACCTTAT+AGG | - | chr5_3:16404840-16404859 | Msa0802220:intron | 35.0% |
| TTTGTATAACCCTCTTGTTC+GGG | - | chr5_3:16404924-16404943 | Msa0802220:intron | 35.0% | |
| !!! | GGCATTGGTAAAAGATTTTG+TGG | - | chr5_3:16405417-16405436 | Msa0802220:intron | 35.0% |
| ! | GGATTGAATTGCCTTTTTGA+TGG | - | chr5_3:16405438-16405457 | Msa0802220:intron | 35.0% |
| ! | GGTCATTTGAAATCATGACT+TGG | - | chr5_3:16405459-16405478 | Msa0802220:intron | 35.0% |
| !! | GAAATCATGACTTGGTATTC+TGG | - | chr5_3:16405467-16405486 | Msa0802220:intron | 35.0% |
| TTAGATGTGAGTGAACTAAG+AGG | - | chr5_3:16405565-16405584 | Msa0802220:intron | 35.0% | |
| TAGATGTGAGTGAACTAAGA+GGG | - | chr5_3:16405566-16405585 | Msa0802220:intron | 35.0% | |
| AGGGCATGATTTGATAAGAT+TGG | - | chr5_3:16405585-16405604 | Msa0802220:intron | 35.0% | |
| GAGTTAAAGCAATTAAGGAG+AGG | - | chr5_3:16405678-16405697 | Msa0802220:intron | 35.0% | |
| ! | TAAAGACAAATGTCGGTTAG+TGG | + | chr5_3:16405719-16405738 | None:intergenic | 35.0% |
| !! | ATAGCTTTGAGCTGGTATTA+TGG | - | chr5_3:16405864-16405883 | Msa0802220:intron | 35.0% |
| !! | TAGCTTTGAGCTGGTATTAT+GGG | - | chr5_3:16405865-16405884 | Msa0802220:intron | 35.0% |
| AGATGACGACATCTAATTGA+TGG | + | chr5_3:16405967-16405986 | None:intergenic | 35.0% | |
| AGTCAAACAAGAATGCAAGT+AGG | + | chr5_3:16406019-16406038 | None:intergenic | 35.0% | |
| TCAATGACAATGTCCATTGA+TGG | + | chr5_3:16406168-16406187 | None:intergenic | 35.0% | |
| ATGAAATGAACATGCTGTAG+TGG | - | chr5_3:16406204-16406223 | Msa0802220:intron | 35.0% | |
| TGAAATGAACATGCTGTAGT+GGG | - | chr5_3:16406205-16406224 | Msa0802220:intron | 35.0% | |
| ! | TTATAGCAGGAGTTGTGTTT+TGG | - | chr5_3:16406284-16406303 | Msa0802220:intron | 35.0% |
| TAAGGAATTTGTAGGATCTG+AGG | - | chr5_3:16406336-16406355 | Msa0802220:intron | 35.0% | |
| GTGTTCAGTTAACATCATGA+TGG | + | chr5_3:16406567-16406586 | None:intergenic | 35.0% | |
| TAATAGGTTTGGACTGAACT+CGG | - | chr5_3:16406593-16406612 | Msa0802220:CDS | 35.0% | |
| GTTATGACTTCACTTCAGAT+GGG | - | chr5_3:16406670-16406689 | Msa0802220:CDS | 35.0% | |
| CAAACACTGTTTCAGAATCA+AGG | - | chr5_3:16406724-16406743 | Msa0802220:CDS | 35.0% | |
| ATCAAGGAATTGTTCTTCCA+TGG | - | chr5_3:16406740-16406759 | Msa0802220:CDS | 35.0% | |
| !! | TTGGTGTTAAAATCCTTGCT+TGG | + | chr5_3:16406957-16406976 | None:intergenic | 35.0% |
| ATCAACATTGACATCTGGAT+TGG | + | chr5_3:16406976-16406995 | None:intergenic | 35.0% | |
| ACAGTAGGAAAATTGAAGCT+TGG | + | chr5_3:16407077-16407096 | None:intergenic | 35.0% | |
| ! | TTTTCCTACTGTTCACTTGA+AGG | - | chr5_3:16407085-16407104 | Msa0802220:exon | 35.0% |
| TCTTGTGATTGTTAGACACA+TGG | - | chr5_3:16407222-16407241 | Msa0802220:five_prime_UTR | 35.0% | |
| !! | GGTAATGGAAAAGGAATTGG+TGG | + | chr5_3:16403958-16403977 | None:intergenic | 40.0% |
| !! | GCCATCATTGGTAATGGAAA+AGG | + | chr5_3:16403967-16403986 | None:intergenic | 40.0% |
| AGTTGAGCCATCATTGGTAA+TGG | + | chr5_3:16403973-16403992 | None:intergenic | 40.0% | |
| ATTACCAATGATGGCTCAAC+TGG | - | chr5_3:16403972-16403991 | Msa0802220:three_prime_UTR | 40.0% | |
| !! | ATGTTCTAGCTCTTGCCATT+GGG | + | chr5_3:16404238-16404257 | None:intergenic | 40.0% |
| ! | CTGACCTCCTTTTACCTATT+CGG | - | chr5_3:16404304-16404323 | Msa0802220:CDS | 40.0% |
| GCAAAAAATGGAGATGTGCT+AGG | - | chr5_3:16404504-16404523 | Msa0802220:CDS | 40.0% | |
| AACGACGTCGAATCATATGA+CGG | + | chr5_3:16404559-16404578 | None:intergenic | 40.0% | |
| ATTCCACAGGCTTTCTTGAA+CGG | + | chr5_3:16404583-16404602 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGATTCCAC+AGG | + | chr5_3:16404596-16404615 | None:intergenic | 40.0% | |
| AGTACTACTTCACAGCAACT+TGG | - | chr5_3:16404656-16404675 | Msa0802220:intron | 40.0% | |
| CGAGTACCATTTGTATGCAA+AGG | + | chr5_3:16404755-16404774 | None:intergenic | 40.0% | |
| CATACAAATGGTACTCGTGA+AGG | - | chr5_3:16404758-16404777 | Msa0802220:intron | 40.0% | |
| TTGTATAACCCTCTTGTTCG+GGG | - | chr5_3:16404925-16404944 | Msa0802220:intron | 40.0% | |
| GACCTTAGTAATCCAGAGTT+TGG | - | chr5_3:16404953-16404972 | Msa0802220:intron | 40.0% | |
| TTAGTAATCCAGAGTTTGGC+CGG | - | chr5_3:16404957-16404976 | Msa0802220:intron | 40.0% | |
| GATCCTTATCATGTGTGTGT+GGG | - | chr5_3:16405243-16405262 | Msa0802220:intron | 40.0% | |
| ATCCTTATCATGTGTGTGTG+GGG | - | chr5_3:16405244-16405263 | Msa0802220:intron | 40.0% | |
| ! | AAGTCATCTGGCCATAGTTT+TGG | - | chr5_3:16405288-16405307 | Msa0802220:intron | 40.0% |
| CAAGCCTAACTCCAAAACTA+TGG | + | chr5_3:16405302-16405321 | None:intergenic | 40.0% | |
| TACTTAATCGGGTTTGGCAT+TGG | - | chr5_3:16405402-16405421 | Msa0802220:intron | 40.0% | |
| TAAAAAGGCGAACAATGACC+AGG | + | chr5_3:16405548-16405567 | None:intergenic | 40.0% | |
| !! | TGTCTTTAGTCTTAACCCTC+CGG | - | chr5_3:16405731-16405750 | Msa0802220:intron | 40.0% |
| ! | GGTTAGTTATGACCAAACTC+CGG | + | chr5_3:16405783-16405802 | None:intergenic | 40.0% |
| GTTAGATGCTAGTTAGACGT+TGG | + | chr5_3:16405804-16405823 | None:intergenic | 40.0% | |
| CTGGATAATCATCAAGTAGC+AGG | + | chr5_3:16405832-16405851 | None:intergenic | 40.0% | |
| TGATGATTATCCAGAAAGGG+TGG | - | chr5_3:16405838-16405857 | Msa0802220:intron | 40.0% | |
| CAAACAAGAATGCAAGTAGG+AGG | + | chr5_3:16406016-16406035 | None:intergenic | 40.0% | |
| AATGGAACGCATTGTAGTCT+TGG | - | chr5_3:16406057-16406076 | Msa0802220:intron | 40.0% | |
| GTGTTCAATGCGATCTAACA+AGG | - | chr5_3:16406094-16406113 | Msa0802220:intron | 40.0% | |
| ! | GTAGGATCTGAGGTATGAAA+TGG | - | chr5_3:16406346-16406365 | Msa0802220:intron | 40.0% |
| CAACTCAATTCATGGCTACA+TGG | - | chr5_3:16406432-16406451 | Msa0802220:CDS | 40.0% | |
| AACCTCTTACAGAAGGATCT+AGG | - | chr5_3:16406630-16406649 | Msa0802220:CDS | 40.0% | |
| TTCCTAGATCCTTCTGTAAG+AGG | + | chr5_3:16406635-16406654 | None:intergenic | 40.0% | |
| ! | CTAGGAACTGTGAAGTATCA+AGG | - | chr5_3:16406648-16406667 | Msa0802220:CDS | 40.0% |
| GGTTATGACTTCACTTCAGA+TGG | - | chr5_3:16406669-16406688 | Msa0802220:CDS | 40.0% | |
| GAAGTTGTAGTTGTCAACCA+TGG | + | chr5_3:16406760-16406779 | None:intergenic | 40.0% | |
| GCCGTTAAAGACAATTTCCT+TGG | + | chr5_3:16406835-16406854 | None:intergenic | 40.0% | |
| GAAACCAGTTGAGCCATCAT+TGG | + | chr5_3:16403979-16403998 | None:intergenic | 45.0% | |
| GAGAGAAATTACAGAGACGG+AGG | + | chr5_3:16404051-16404070 | None:intergenic | 45.0% | |
| !! | TGAGTTGGTGACCACATCAA+CGG | + | chr5_3:16404198-16404217 | None:intergenic | 45.0% |
| !! | GATGTTCTAGCTCTTGCCAT+TGG | + | chr5_3:16404239-16404258 | None:intergenic | 45.0% |
| ATAGGTAAAAGGAGGTCAGG+AGG | + | chr5_3:16404303-16404322 | None:intergenic | 45.0% | |
| CGAATAGGTAAAAGGAGGTC+AGG | + | chr5_3:16404306-16404325 | None:intergenic | 45.0% | |
| GTTGTTGGGTTCTTACGAGA+TGG | + | chr5_3:16404354-16404373 | None:intergenic | 45.0% | |
| AAATTGACCCAGAACCAGGT+AGG | - | chr5_3:16404465-16404484 | Msa0802220:CDS | 45.0% | |
| ! | TTCTACACCTACCTGGTTCT+GGG | + | chr5_3:16404475-16404494 | None:intergenic | 45.0% |
| TCTGTTCTTCTACACCTACC+TGG | + | chr5_3:16404482-16404501 | None:intergenic | 45.0% | |
| GGTAGGTGTAGAAGAACAGA+TGG | - | chr5_3:16404482-16404501 | Msa0802220:CDS | 45.0% | |
| CGGTCACAGTACTTAGAATC+AGG | + | chr5_3:16404539-16404558 | None:intergenic | 45.0% | |
| TTACCGTTCAAGAAAGCCTG+TGG | - | chr5_3:16404577-16404596 | Msa0802220:CDS | 45.0% | |
| ! | AAGAAGCATAGGGTCCATGT+GGG | + | chr5_3:16404813-16404832 | None:intergenic | 45.0% |
| ! | CCTGAAGAGGAAGAAGCATA+GGG | + | chr5_3:16404823-16404842 | None:intergenic | 45.0% |
| CCTATGCTTCTTCCTCTTCA+GGG | - | chr5_3:16404821-16404840 | Msa0802220:intron | 45.0% | |
| GGTTTCTTAGAACCCTGAAG+AGG | + | chr5_3:16404836-16404855 | None:intergenic | 45.0% | |
| TGTATAACCCTCTTGTTCGG+GGG | - | chr5_3:16404926-16404945 | Msa0802220:intron | 45.0% | |
| GGCCAAACTCTGGATTACTA+AGG | + | chr5_3:16404958-16404977 | None:intergenic | 45.0% | |
| TAGTAATCCAGAGTTTGGCC+GGG | - | chr5_3:16404958-16404977 | Msa0802220:intron | 45.0% | |
| !!! | TTTTGGGGTGTTTTGCCTTG+TGG | - | chr5_3:16405075-16405094 | Msa0802220:intron | 45.0% |
| !! | TTTGGGGTGTTTTGCCTTGT+GGG | - | chr5_3:16405076-16405095 | Msa0802220:intron | 45.0% |
| ! | TTTTGCCTTGTGGGGTTTTG+AGG | - | chr5_3:16405085-16405104 | Msa0802220:intron | 45.0% |
| CATTTCCTCAAAACCCCACA+AGG | + | chr5_3:16405093-16405112 | None:intergenic | 45.0% | |
| GGATCCTTATCATGTGTGTG+TGG | - | chr5_3:16405242-16405261 | Msa0802220:intron | 45.0% | |
| TGGGGTGAGATTTGAGAGTA+AGG | - | chr5_3:16405262-16405281 | Msa0802220:intron | 45.0% | |
| AGAGTAAGGTGCAAGTCATC+TGG | - | chr5_3:16405276-16405295 | Msa0802220:intron | 45.0% | |
| !!! | CTGGCCATAGTTTTGGAGTT+AGG | - | chr5_3:16405295-16405314 | Msa0802220:intron | 45.0% |
| AAGCTATGAACCACCCTTTC+TGG | + | chr5_3:16405851-16405870 | None:intergenic | 45.0% | |
| ! | TCCTTTTCCTGGTCCATCAA+TGG | - | chr5_3:16406152-16406171 | Msa0802220:intron | 45.0% |
| ! | TCCATTGATGGACCAGGAAA+AGG | + | chr5_3:16406156-16406175 | None:intergenic | 45.0% |
| ! | ACAATGTCCATTGATGGACC+AGG | + | chr5_3:16406162-16406181 | None:intergenic | 45.0% |
| AATTCATGGCTACATGGCCT+CGG | - | chr5_3:16406438-16406457 | Msa0802220:CDS | 45.0% | |
| ! | GATCCTGATGTTTAAGACCG+AGG | + | chr5_3:16406458-16406477 | None:intergenic | 45.0% |
| GGAGAACAACCTCTTACAGA+AGG | - | chr5_3:16406623-16406642 | Msa0802220:CDS | 45.0% | |
| ACTTCACTTCAGATGGGATG+TGG | - | chr5_3:16406676-16406695 | Msa0802220:CDS | 45.0% | |
| !! | GTTCTCTTGTTGTTCGCTGT+TGG | + | chr5_3:16406782-16406801 | None:intergenic | 45.0% |
| ATTGTCTTTAACGGCCAGCT+AGG | - | chr5_3:16406840-16406859 | Msa0802220:intron | 45.0% | |
| CCTGTTTCAAACTACCTAGC+TGG | + | chr5_3:16406857-16406876 | None:intergenic | 45.0% | |
| ! | CCAGCTAGGTAGTTTGAAAC+AGG | - | chr5_3:16406854-16406873 | Msa0802220:intron | 45.0% |
| AGATTTAGCCTCCTCTGCAA+TGG | - | chr5_3:16406923-16406942 | Msa0802220:CDS | 45.0% | |
| AATGGAGTATAGGCCAAGCA+AGG | - | chr5_3:16406941-16406960 | Msa0802220:CDS | 45.0% | |
| TCCTACTGTTCACTTGAAGG+AGG | - | chr5_3:16407088-16407107 | Msa0802220:exon | 45.0% | |
| TCCTCCTTCAAGTGAACAGT+AGG | + | chr5_3:16407092-16407111 | None:intergenic | 45.0% | |
| TAGACACATGGTGTGATGTG+TGG | - | chr5_3:16407234-16407253 | Msa0802220:five_prime_UTR | 45.0% | |
| TACAGAGACGGAGGTTGTGA+TGG | + | chr5_3:16404042-16404061 | None:intergenic | 50.0% | |
| TTCAACAACCGCCGTTGATG+TGG | - | chr5_3:16404184-16404203 | Msa0802220:three_prime_UTR | 50.0% | |
| ACTGTGAACGGTGGATGAGT+TGG | + | chr5_3:16404213-16404232 | None:intergenic | 50.0% | |
| TGCCATTGGGAGACTGTGAA+CGG | + | chr5_3:16404225-16404244 | None:intergenic | 50.0% | |
| CTTCTACACCTACCTGGTTC+TGG | + | chr5_3:16404476-16404495 | None:intergenic | 50.0% | |
| !! | ACTTCACAGCAACTTGGTGC+TGG | - | chr5_3:16404662-16404681 | Msa0802220:intron | 50.0% |
| ! | AGAAGCATAGGGTCCATGTG+GGG | + | chr5_3:16404812-16404831 | None:intergenic | 50.0% |
| ! | GAAGAAGCATAGGGTCCATG+TGG | + | chr5_3:16404814-16404833 | None:intergenic | 50.0% |
| CCCTATGCTTCTTCCTCTTC+AGG | - | chr5_3:16404820-16404839 | Msa0802220:intron | 50.0% | |
| ! | CCCTGAAGAGGAAGAAGCAT+AGG | + | chr5_3:16404824-16404843 | None:intergenic | 50.0% |
| GTATAACCCTCTTGTTCGGG+GGG | - | chr5_3:16404927-16404946 | Msa0802220:intron | 50.0% | |
| GCCAGACTTTACTTACCTCC+CGG | + | chr5_3:16404979-16404998 | None:intergenic | 50.0% | |
| !! | TTGGGGTGTTTTGCCTTGTG+GGG | - | chr5_3:16405077-16405096 | Msa0802220:intron | 50.0% |
| CACCCCACACACACATGATA+AGG | + | chr5_3:16405249-16405268 | None:intergenic | 50.0% | |
| CTACCAGAGCCTCTTCTCTT+GGG | + | chr5_3:16405759-16405778 | None:intergenic | 50.0% | |
| ACTACCAGAGCCTCTTCTCT+TGG | + | chr5_3:16405760-16405779 | None:intergenic | 50.0% | |
| !! | GGTGGTTCATAGCTTTGAGC+TGG | - | chr5_3:16405856-16405875 | Msa0802220:intron | 50.0% |
| TGGCCTCGGTCTTAAACATC+AGG | - | chr5_3:16406452-16406471 | Msa0802220:CDS | 50.0% | |
| GTCACTGAAGAGAGACTGAG+AGG | + | chr5_3:16406889-16406908 | None:intergenic | 50.0% | |
| CTCAGTCTCTCTTCAGTGAC+TGG | - | chr5_3:16406889-16406908 | Msa0802220:intron | 50.0% | |
| CCTATACTCCATTGCAGAGG+AGG | + | chr5_3:16406934-16406953 | None:intergenic | 50.0% | |
| CCTCCTCTGCAATGGAGTAT+AGG | - | chr5_3:16406931-16406950 | Msa0802220:CDS | 50.0% | |
| TGGCCTATACTCCATTGCAG+AGG | + | chr5_3:16406937-16406956 | None:intergenic | 50.0% | |
| ! | GGCTCAACTGGTTTCCTCCA+AGG | - | chr5_3:16403984-16404003 | Msa0802220:three_prime_UTR | 55.0% |
| AAAGGGTGGGGAGCTTACCT+TGG | + | chr5_3:16404004-16404023 | None:intergenic | 55.0% | |
| !! | GGAGGTTGTGATGGTGGTGA+GGG | + | chr5_3:16404033-16404052 | None:intergenic | 55.0% |
| AGAGACGGAGGTTGTGATGG+TGG | + | chr5_3:16404039-16404058 | None:intergenic | 55.0% | |
| !! | GTTGGTGACCACATCAACGG+CGG | + | chr5_3:16404195-16404214 | None:intergenic | 55.0% |
| CATTGGGAGACTGTGAACGG+TGG | + | chr5_3:16404222-16404241 | None:intergenic | 55.0% | |
| CACCGTTCACAGTCTCCCAA+TGG | - | chr5_3:16404220-16404239 | Msa0802220:three_prime_UTR | 55.0% | |
| !! | TCACAGCAACTTGGTGCTGG+TGG | - | chr5_3:16404665-16404684 | Msa0802220:intron | 55.0% |
| !! | CTTGGTGCTGGTGGTTCTAG+TGG | - | chr5_3:16404674-16404693 | Msa0802220:intron | 55.0% |
| TAATCCAGAGTTTGGCCGGG+AGG | - | chr5_3:16404961-16404980 | Msa0802220:intron | 55.0% | |
| GCCGGGAGGTAAGTAAAGTC+TGG | - | chr5_3:16404975-16404994 | Msa0802220:intron | 55.0% | |
| CTCTTCTCTTGGGAACCGGA+GGG | + | chr5_3:16405749-16405768 | None:intergenic | 55.0% | |
| GAGCCTCTTCTCTTGGGAAC+CGG | + | chr5_3:16405753-16405772 | None:intergenic | 55.0% | |
| GTTCCCAAGAGAAGAGGCTC+TGG | - | chr5_3:16405753-16405772 | Msa0802220:intron | 55.0% | |
| ! | GAGAAGAGGCTCTGGTAGTC+CGG | - | chr5_3:16405761-16405780 | Msa0802220:intron | 55.0% |
| TGGACTGAACTCGGAAGCAG+AGG | - | chr5_3:16406602-16406621 | Msa0802220:CDS | 55.0% | |
| GCGTCGAGGTTAAACAGCTC+AGG | + | chr5_3:16406804-16406823 | None:intergenic | 55.0% | |
| CTCTCTTCAGTGACTGGCAG+TGG | - | chr5_3:16406895-16406914 | Msa0802220:intron | 55.0% | |
| TGAGGGAGGAGGAAAGGGTG+GGG | + | chr5_3:16404016-16404035 | None:intergenic | 60.0% | |
| GTGAGGGAGGAGGAAAGGGT+GGG | + | chr5_3:16404017-16404036 | None:intergenic | 60.0% | |
| GGTGGTGAGGGAGGAGGAAA+GGG | + | chr5_3:16404021-16404040 | None:intergenic | 60.0% | |
| ! | TGGTGGTGAGGGAGGAGGAA+AGG | + | chr5_3:16404022-16404041 | None:intergenic | 60.0% |
| !! | TGTGATGGTGGTGAGGGAGG+AGG | + | chr5_3:16404027-16404046 | None:intergenic | 60.0% |
| !! | GGTTGTGATGGTGGTGAGGG+AGG | + | chr5_3:16404030-16404049 | None:intergenic | 60.0% |
| !! | CGGAGGTTGTGATGGTGGTG+AGG | + | chr5_3:16404034-16404053 | None:intergenic | 60.0% |
| TGGGAACACCATGCCCCACA+TGG | - | chr5_3:16404796-16404815 | Msa0802220:intron | 60.0% | |
| CATAGGGTCCATGTGGGGCA+TGG | + | chr5_3:16404807-16404826 | None:intergenic | 60.0% | |
| TAACCCTCTTGTTCGGGGGG+AGG | - | chr5_3:16404930-16404949 | Msa0802220:intron | 60.0% | |
| AACCCTCTTGTTCGGGGGGA+GGG | - | chr5_3:16404931-16404950 | Msa0802220:intron | 60.0% | |
| CTTACCTCCCGGCCAAACTC+TGG | + | chr5_3:16404968-16404987 | None:intergenic | 60.0% | |
| CCTCTTCTCTTGGGAACCGG+AGG | + | chr5_3:16405750-16405769 | None:intergenic | 60.0% | |
| CCTCCGGTTCCCAAGAGAAG+AGG | - | chr5_3:16405747-16405766 | Msa0802220:intron | 60.0% | |
| ! | GGCTCTGGTAGTCCGGAGTT+TGG | - | chr5_3:16405768-16405787 | Msa0802220:intron | 60.0% |
| CCTTGGATCTTGCAGCGTCG+AGG | + | chr5_3:16406818-16406837 | None:intergenic | 60.0% | |
| CCTCGACGCTGCAAGATCCA+AGG | - | chr5_3:16406815-16406834 | Msa0802220:intron | 60.0% | |
| GGGTGGGGAGCTTACCTTGG+AGG | + | chr5_3:16404001-16404020 | None:intergenic | 65.0% | |
| GGTGAGGGAGGAGGAAAGGG+TGG | + | chr5_3:16404018-16404037 | None:intergenic | 65.0% | |
| GTCCCTCCCCCCGAACAAGA+GGG | + | chr5_3:16404936-16404955 | None:intergenic | 65.0% | |
| GGTCCCTCCCCCCGAACAAG+AGG | + | chr5_3:16404937-16404956 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16403945 | 16407324 | 16403945 | ID=Msa0802220;Name=Msa0802220 |
| chr5_3 | mRNA | 16403945 | 16407324 | 16403945 | ID=Msa0802220-mRNA-1;Parent=Msa0802220;Name=Msa0802220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=232|1|1|1|1|1|3|326|331 |
| chr5_3 | exon | 16403945 | 16404670 | 16403945 | ID=Msa0802220-mRNA-1:exon:6901;Parent=Msa0802220-mRNA-1 |
| chr5_3 | exon | 16406408 | 16406822 | 16406408 | ID=Msa0802220-mRNA-1:exon:6900;Parent=Msa0802220-mRNA-1 |
| chr5_3 | exon | 16406912 | 16407324 | 16406912 | ID=Msa0802220-mRNA-1:exon:6899;Parent=Msa0802220-mRNA-1 |
| chr5_3 | five_prime_UTR | 16407093 | 16407324 | 16407093 | ID=Msa0802220-mRNA-1:five_prime_utr;Parent=Msa0802220-mRNA-1 |
| chr5_3 | CDS | 16406912 | 16407092 | 16406912 | ID=Msa0802220-mRNA-1:cds;Parent=Msa0802220-mRNA-1 |
| chr5_3 | CDS | 16406408 | 16406822 | 16406408 | ID=Msa0802220-mRNA-1:cds;Parent=Msa0802220-mRNA-1 |
| chr5_3 | CDS | 16404271 | 16404670 | 16404271 | ID=Msa0802220-mRNA-1:cds;Parent=Msa0802220-mRNA-1 |
| chr5_3 | three_prime_UTR | 16403945 | 16404270 | 16403945 | ID=Msa0802220-mRNA-1:three_prime_utr;Parent=Msa0802220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
