Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802540 | XP_003612709.1 | 98.589 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802540 | sp|F4ICK8|IWS1_ARATH | 64.133 | 513 | 156 | 10 | 1 | 496 | 1 | 502 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802540 | G7K9K8 | 98.589 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0802540 | TR | IWS1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802540 | MtrunA17_Chr5g0410141 | 98.589 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802540 | AT1G32130.1 | 64.133 | 513 | 156 | 10 | 1 | 496 | 1 | 502 | 0.0 | 588 |
| Msa0802540 | AT1G32130.2 | 63.158 | 513 | 152 | 11 | 1 | 496 | 1 | 493 | 0.0 | 569 |
| Msa0802540 | AT4G19000.1 | 42.048 | 459 | 176 | 12 | 58 | 496 | 25 | 413 | 1.15e-89 | 280 |
Find 172 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATCAAACTTAAAAGTATT+TGG | 0.177912 | 5_3:-16963083 | None:intergenic |
| CCAAGGATTTGGTTGATAAA+TGG | 0.185509 | 5_3:+16961159 | Msa0802540:CDS |
| ATCCCTGCAGCTTTAGTTGC+TGG | 0.233171 | 5_3:-16961644 | None:intergenic |
| TTTAATGAAAGTTTGGATTC+TGG | 0.246432 | 5_3:+16963462 | Msa0802540:three_prime_UTR |
| AGAAGGAGAAGAGGCTGAAA+GGG | 0.278023 | 5_3:+16959074 | Msa0802540:CDS |
| TCATCAATTTAATGAAAGTT+TGG | 0.291836 | 5_3:+16963455 | Msa0802540:three_prime_UTR |
| TGAAAATTGTGTTGTGAATT+GGG | 0.294043 | 5_3:-16958627 | None:intergenic |
| AAATCCAAAGGTGTGGCTTC+TGG | 0.295709 | 5_3:-16961847 | None:intergenic |
| ATGAAGAAATCAATGTAAAT+AGG | 0.314425 | 5_3:+16961129 | Msa0802540:CDS |
| TTGAAAATTGTGTTGTGAAT+TGG | 0.316384 | 5_3:-16958628 | None:intergenic |
| AGGAAGAAAGGGAAGGAAAG+TGG | 0.327063 | 5_3:+16959043 | Msa0802540:CDS |
| TTTGGATTCTGGACACAAAT+TGG | 0.328943 | 5_3:+16963473 | Msa0802540:three_prime_UTR |
| AAAGGGAAGGAAAGTGGGTC+TGG | 0.339481 | 5_3:+16959049 | Msa0802540:CDS |
| GCTGTCCGTATGTTGATATT+TGG | 0.349835 | 5_3:-16960797 | None:intergenic |
| TAGGAGATTAGCCAAGGATT+TGG | 0.358266 | 5_3:+16961148 | Msa0802540:CDS |
| GCTCGTGCTCTGATTTCATC+GGG | 0.361338 | 5_3:-16961898 | None:intergenic |
| TTGATTAATACTGGATCAAT+TGG | 0.363193 | 5_3:+16963099 | Msa0802540:three_prime_UTR |
| GGTCCGGAGAGTCGTCTTCC+AGG | 0.365768 | 5_3:+16961809 | Msa0802540:CDS |
| CAAGGATTTGGTTGATAAAT+GGG | 0.367845 | 5_3:+16961160 | Msa0802540:CDS |
| AAGAGACGGTGATCTTGATT+TGG | 0.370436 | 5_3:+16961673 | Msa0802540:CDS |
| TAATGAAGGTGCCAGGAATA+TGG | 0.373132 | 5_3:+16960032 | Msa0802540:CDS |
| GAAGGGAGGAAGAGGAAGAA+AGG | 0.381719 | 5_3:+16959031 | Msa0802540:CDS |
| GGAAAGTGGGTCTGGGAAGA+AGG | 0.382203 | 5_3:+16959057 | Msa0802540:CDS |
| CGTAAACCGGCGTCTGTGAC+CGG | 0.386470 | 5_3:-16958895 | None:intergenic |
| GGAAAGGGTGGGTCTAGATT+TGG | 0.386770 | 5_3:+16959112 | Msa0802540:CDS |
| AATGGCGCTGCCACCGGAGC+TGG | 0.393163 | 5_3:+16958985 | Msa0802540:CDS |
| ACCGGAGCTGGAAGATGAAT+TGG | 0.398311 | 5_3:+16958997 | Msa0802540:CDS |
| AGGAAGATGAAGGGAGGAAG+AGG | 0.401255 | 5_3:+16959023 | Msa0802540:CDS |
| TGCTCGTGCTCTGATTTCAT+CGG | 0.401921 | 5_3:-16961899 | None:intergenic |
| GACGAATCGTTGTCGTAAAC+CGG | 0.402817 | 5_3:-16958908 | None:intergenic |
| TCATAATGCTCTAGATCTAT+AGG | 0.403177 | 5_3:-16960933 | None:intergenic |
| TGGCCTTGATGCATGTTGCC+TGG | 0.404163 | 5_3:-16961827 | None:intergenic |
| GAGATGTGGGATGCACTTGC+TGG | 0.404558 | 5_3:+16959193 | Msa0802540:CDS |
| AAGAGGACGCTGAGCTTAAT+CGG | 0.405962 | 5_3:+16960540 | Msa0802540:CDS |
| GCGCATTATACCAAGCTTGC+CGG | 0.406657 | 5_3:-16963127 | None:intergenic |
| TTCTCCTGGCGATGCTCCAC+AGG | 0.409188 | 5_3:+16960119 | Msa0802540:CDS |
| TGCGAAATACTGAGGATGAT+AGG | 0.410044 | 5_3:+16961494 | Msa0802540:CDS |
| GTTATCATCATCCATATTCC+TGG | 0.415889 | 5_3:-16960043 | None:intergenic |
| TCAGTACAACAATTCATGTC+AGG | 0.420966 | 5_3:-16963153 | None:intergenic |
| AGAGGGGTTGGTGGGAAAAG+TGG | 0.424017 | 5_3:+16959145 | Msa0802540:CDS |
| AAGGCCAGAAGCCACACCTT+TGG | 0.425652 | 5_3:+16961843 | Msa0802540:CDS |
| AGGATGATAGGGTTCCTTAC+AGG | 0.430195 | 5_3:+16961506 | Msa0802540:CDS |
| AAGAAGGAGAAGAGGCTGAA+AGG | 0.431465 | 5_3:+16959073 | Msa0802540:CDS |
| AAGGGAGGAAGAGGAAGAAA+GGG | 0.431718 | 5_3:+16959032 | Msa0802540:CDS |
| TTCTTAATCAACCGTTTCCT+CGG | 0.433348 | 5_3:-16958941 | None:intergenic |
| CCATTTATCAACCAAATCCT+TGG | 0.433652 | 5_3:-16961159 | None:intergenic |
| GGTGGTTCTAAGAGAGGGGT+TGG | 0.434042 | 5_3:+16959133 | Msa0802540:CDS |
| TGCTAAATTTATTGAAGAGT+TGG | 0.438820 | 5_3:+16960747 | Msa0802540:CDS |
| ACTGGATCAATTGGTTTGTC+CGG | 0.439640 | 5_3:+16963108 | Msa0802540:three_prime_UTR |
| TCACAGTGATTGAAATTTGA+TGG | 0.440926 | 5_3:+16963251 | Msa0802540:three_prime_UTR |
| GGAGTAGAACCTGCTTTGTA+TGG | 0.441599 | 5_3:+16960081 | Msa0802540:CDS |
| TTAACCGATGGCCTCCTGTA+AGG | 0.442423 | 5_3:-16961520 | None:intergenic |
| AAGGGAAGGAAAGTGGGTCT+GGG | 0.445015 | 5_3:+16959050 | Msa0802540:CDS |
| TGATGACATAAATGCGGGAC+AGG | 0.445456 | 5_3:-16963297 | None:intergenic |
| TACGATGAACCGCGTTCTCC+TGG | 0.446496 | 5_3:+16960105 | Msa0802540:CDS |
| CAGCTGAAGAGAAGTGGTCT+TGG | 0.447062 | 5_3:+16960966 | Msa0802540:CDS |
| TTTATTAGTTGAGAATGTTA+TGG | 0.452902 | 5_3:+16960496 | Msa0802540:CDS |
| TGGCTTGAGCCACTTCCTGA+TGG | 0.456323 | 5_3:+16960767 | Msa0802540:CDS |
| GGCTTGAGCCACTTCCTGAT+GGG | 0.457670 | 5_3:+16960768 | Msa0802540:CDS |
| AAGTAAAGCCACAGTACATT+GGG | 0.466259 | 5_3:+16963367 | Msa0802540:three_prime_UTR |
| ATTTACATTGATTTCTTCAT+CGG | 0.467117 | 5_3:-16961126 | None:intergenic |
| GAGGGGTTGGTGGGAAAAGT+GGG | 0.469594 | 5_3:+16959146 | Msa0802540:CDS |
| TCCAATTCATCTTCCAGCTC+CGG | 0.470206 | 5_3:-16958998 | None:intergenic |
| GGAAGAAAGGGAAGGAAAGT+GGG | 0.471748 | 5_3:+16959044 | Msa0802540:CDS |
| TGAAGACGGTGAACCGTTGA+TGG | 0.474457 | 5_3:+16958775 | Msa0802540:CDS |
| TGCCACAGGAGATTCACATC+AGG | 0.476402 | 5_3:-16963210 | None:intergenic |
| TAAGAAATTGCAGCAGTTGA+GGG | 0.478322 | 5_3:+16963003 | Msa0802540:CDS |
| CGAAATCAAAGCCGAGGAAA+CGG | 0.479189 | 5_3:+16958930 | Msa0802540:CDS |
| TATTTATAAGAACTAGGATC+GGG | 0.481575 | 5_3:-16958592 | None:intergenic |
| TCGTCGAGTTGTTGTGGCTC+CGG | 0.486977 | 5_3:-16958833 | None:intergenic |
| ACTAATAAAGCAATTTCTGC+AGG | 0.487697 | 5_3:-16960482 | None:intergenic |
| ATTGGTTTGTCCGGCAAGCT+TGG | 0.489742 | 5_3:+16963117 | Msa0802540:three_prime_UTR |
| AGGCCAGCAACTAAAGCTGC+AGG | 0.496201 | 5_3:+16961641 | Msa0802540:intron |
| CGAGTACTCTTATTAAATAT+AGG | 0.497284 | 5_3:-16961460 | None:intergenic |
| GAAGGAGAAGAGGCTGAAAG+GGG | 0.497568 | 5_3:+16959075 | Msa0802540:CDS |
| GTGCAAGGTTGTGAAGAAGA+AGG | 0.497779 | 5_3:-16958564 | None:intergenic |
| TGAGGAAGATGATGAAATCA+AGG | 0.503820 | 5_3:+16960415 | Msa0802540:CDS |
| GGTTCTAAGAGAGGGGTTGG+TGG | 0.507545 | 5_3:+16959136 | Msa0802540:CDS |
| GTTCTAAGAGAGGGGTTGGT+GGG | 0.509279 | 5_3:+16959137 | Msa0802540:CDS |
| TTGTAATGCAGGCCTAGGTC+CGG | 0.510730 | 5_3:+16961793 | Msa0802540:intron |
| GATTTGGTGGTTCTAAGAGA+GGG | 0.512613 | 5_3:+16959128 | Msa0802540:CDS |
| AGTTGAACATGATAGAATCT+TGG | 0.517157 | 5_3:+16963500 | Msa0802540:three_prime_UTR |
| GTGAATTATTTATAAGAACT+AGG | 0.518561 | 5_3:-16958598 | None:intergenic |
| ATATTTGGCAGACTCCCATC+AGG | 0.519094 | 5_3:-16960782 | None:intergenic |
| GCGAAATACTGAGGATGATA+GGG | 0.519731 | 5_3:+16961495 | Msa0802540:CDS |
| TCAAAATCGTCGAGTTGTTG+TGG | 0.520003 | 5_3:-16958839 | None:intergenic |
| ACAGTCAATGGCGCTGCCAC+CGG | 0.522918 | 5_3:+16958979 | Msa0802540:CDS |
| AAAGTAAAGCCACAGTACAT+TGG | 0.523511 | 5_3:+16963366 | Msa0802540:three_prime_UTR |
| TTGATTAAGAAAAGTGATAC+CGG | 0.525069 | 5_3:+16958953 | Msa0802540:CDS |
| GAAAATTGTGTTGTGAATTG+GGG | 0.525301 | 5_3:-16958626 | None:intergenic |
| TCAACCTGTGGAGCATCGCC+AGG | 0.525860 | 5_3:-16960123 | None:intergenic |
| TTGCCTGGAAGACGACTCTC+CGG | 0.529281 | 5_3:-16961812 | None:intergenic |
| TTCTTGAGTTTATTGACCGC+GGG | 0.529753 | 5_3:-16960572 | None:intergenic |
| CGGATTGTCTTCGTAACCCA+TGG | 0.532356 | 5_3:-16958655 | None:intergenic |
| TTATTTATAAGAACTAGGAT+CGG | 0.534734 | 5_3:-16958593 | None:intergenic |
| AATTGGAGGAGGAAGATGAA+GGG | 0.534814 | 5_3:+16959014 | Msa0802540:CDS |
| CTATATTTAATAAGAGTACT+CGG | 0.535250 | 5_3:+16961461 | Msa0802540:CDS |
| CACAGTGATTGAAATTTGAT+GGG | 0.535806 | 5_3:+16963252 | Msa0802540:three_prime_UTR |
| GAATTGGAGGAGGAAGATGA+AGG | 0.537209 | 5_3:+16959013 | Msa0802540:CDS |
| ATCCGACGGCGAAGGATCAC+CGG | 0.537994 | 5_3:+16958814 | Msa0802540:CDS |
| AATCATCAGCTTACTTTGAG+AGG | 0.539854 | 5_3:-16960616 | None:intergenic |
| CACCAACCTTCATACGATGC+TGG | 0.541202 | 5_3:-16961939 | None:intergenic |
| GGTAGTGGTAGTAGTGGAAA+GGG | 0.541485 | 5_3:+16959097 | Msa0802540:CDS |
| GGCAGACTCCCATCAGGAAG+TGG | 0.542089 | 5_3:-16960776 | None:intergenic |
| ATAAGAAATTGCAGCAGTTG+AGG | 0.546540 | 5_3:+16963002 | Msa0802540:CDS |
| GGGTAGTGGTAGTAGTGGAA+AGG | 0.547194 | 5_3:+16959096 | Msa0802540:CDS |
| GAGGAAGAGGAAGAAAGGGA+AGG | 0.547980 | 5_3:+16959036 | Msa0802540:CDS |
| CTCCGGTGATCCTTCGCCGT+CGG | 0.548204 | 5_3:-16958816 | None:intergenic |
| AAGGGTGGGTCTAGATTTGG+TGG | 0.551074 | 5_3:+16959115 | Msa0802540:CDS |
| GGAGCTGGAAGATGAATTGG+AGG | 0.551704 | 5_3:+16959000 | Msa0802540:CDS |
| AGGATGATAATGAAGGTGCC+AGG | 0.553447 | 5_3:+16960025 | Msa0802540:intron |
| GTAAACCGGCGTCTGTGACC+GGG | 0.555381 | 5_3:-16958894 | None:intergenic |
| TGATACCGGAAAACAGTCAA+TGG | 0.558638 | 5_3:+16958967 | Msa0802540:CDS |
| ATTTGGTGGTTCTAAGAGAG+GGG | 0.564155 | 5_3:+16959129 | Msa0802540:CDS |
| AGAGAACAGCTGAAGAGAAG+TGG | 0.564504 | 5_3:+16960960 | Msa0802540:CDS |
| GAGTGTCGAAGGTCGTGGTA+TGG | 0.565291 | 5_3:+16963060 | Msa0802540:CDS |
| AGGTGAAGTTAATGAGATGT+GGG | 0.565360 | 5_3:+16959180 | Msa0802540:CDS |
| TACTCTTATTAAATATAGGT+CGG | 0.568735 | 5_3:-16961456 | None:intergenic |
| CTTCCAGGCAACATGCATCA+AGG | 0.569461 | 5_3:+16961824 | Msa0802540:CDS |
| CAGTACAACAATTCATGTCA+GGG | 0.575944 | 5_3:-16963152 | None:intergenic |
| TGGAGGAGGAAGATGAAGGG+AGG | 0.576145 | 5_3:+16959017 | Msa0802540:CDS |
| AAGGAGAAGAGGCTGAAAGG+GGG | 0.577876 | 5_3:+16959076 | Msa0802540:CDS |
| GTCTGCCAAATATCAACATA+CGG | 0.578071 | 5_3:+16960792 | Msa0802540:CDS |
| AATTCATCTTCCAGCTCCGG+TGG | 0.578459 | 5_3:-16958995 | None:intergenic |
| GTCATCAAGGATGATAATGA+AGG | 0.578740 | 5_3:+16960018 | Msa0802540:intron |
| GAGAGGACTTCTATAAGAAG+AGG | 0.579982 | 5_3:-16960599 | None:intergenic |
| ACAAGACCAGCATCGTATGA+AGG | 0.580052 | 5_3:+16961933 | Msa0802540:CDS |
| AGATTTGGTGGTTCTAAGAG+AGG | 0.580151 | 5_3:+16959127 | Msa0802540:CDS |
| TTTAGGTATCGTGATGAAGA+CGG | 0.580572 | 5_3:+16958761 | Msa0802540:intron |
| ATCTCCTGTGGCATCTATGT+CGG | 0.583098 | 5_3:+16963220 | Msa0802540:three_prime_UTR |
| GGTCTGGGAAGAAGGAGAAG+AGG | 0.586570 | 5_3:+16959065 | Msa0802540:CDS |
| GCTTGAGGTTACAGCAGAAG+AGG | 0.589644 | 5_3:+16960523 | Msa0802540:CDS |
| GAAGAGAAGTGGTCTTGGAA+AGG | 0.592321 | 5_3:+16960971 | Msa0802540:CDS |
| AGTGGTAGTAGTGGAAAGGG+TGG | 0.594986 | 5_3:+16959100 | Msa0802540:CDS |
| CTTCTTGAGTTTATTGACCG+CGG | 0.595981 | 5_3:-16960573 | None:intergenic |
| GCTGGAAGATGAATTGGAGG+AGG | 0.598340 | 5_3:+16959003 | Msa0802540:CDS |
| GAATGTTATGGCTGAGCTTG+AGG | 0.598789 | 5_3:+16960508 | Msa0802540:CDS |
| GACGTACAATCCGACGGCGA+AGG | 0.604113 | 5_3:+16958806 | Msa0802540:CDS |
| TCATCGTAACCATACAAAGC+AGG | 0.606767 | 5_3:-16960090 | None:intergenic |
| TGTAAATAGGAGATTAGCCA+AGG | 0.607197 | 5_3:+16961142 | Msa0802540:CDS |
| GCTACAAAACTGAGTGTCGA+AGG | 0.607526 | 5_3:+16963049 | Msa0802540:CDS |
| GAAGACGACTCTCCGGACCT+AGG | 0.607941 | 5_3:-16961805 | None:intergenic |
| AAGGTGAAGTTAATGAGATG+TGG | 0.610064 | 5_3:+16959179 | Msa0802540:CDS |
| GGTTCCTTACAGGAGGCCAT+CGG | 0.612819 | 5_3:+16961516 | Msa0802540:CDS |
| TTTCTAGGCTGAGGAAGGTG+AGG | 0.613066 | 5_3:+16960397 | Msa0802540:intron |
| GTGGTAGTAGTGGAAAGGGT+GGG | 0.617409 | 5_3:+16959101 | Msa0802540:CDS |
| GATAACTTTATAGACGACAC+TGG | 0.622093 | 5_3:+16960060 | Msa0802540:CDS |
| TCGTGCCCGGTCACAGACGC+CGG | 0.622500 | 5_3:+16958889 | Msa0802540:CDS |
| GCCACAGGAGATTCACATCA+GGG | 0.625554 | 5_3:-16963209 | None:intergenic |
| ATGACATAAATGCGGGACAG+GGG | 0.627428 | 5_3:-16963295 | None:intergenic |
| TAATCGGCAGCACAAGCCCG+CGG | 0.630405 | 5_3:+16960556 | Msa0802540:CDS |
| GATGACATAAATGCGGGACA+GGG | 0.631085 | 5_3:-16963296 | None:intergenic |
| CTCGTGCTCTGATTTCATCG+GGG | 0.632880 | 5_3:-16961897 | None:intergenic |
| TGCACTTGCTGGAAATTCTG+AGG | 0.634543 | 5_3:+16959204 | Msa0802540:CDS |
| AAACTGAGTGTCGAAGGTCG+TGG | 0.635870 | 5_3:+16963055 | Msa0802540:CDS |
| GATGCCGACATAGATGCCAC+AGG | 0.645553 | 5_3:-16963224 | None:intergenic |
| ATGATAGGGTTCCTTACAGG+AGG | 0.648469 | 5_3:+16961509 | Msa0802540:CDS |
| ATTCGTCGAAATCAAAGCCG+AGG | 0.649525 | 5_3:+16958924 | Msa0802540:CDS |
| GGCCAGCAACTAAAGCTGCA+GGG | 0.650244 | 5_3:+16961642 | Msa0802540:intron |
| GGAGCATCGCCAGGAGAACG+CGG | 0.650507 | 5_3:-16960114 | None:intergenic |
| GCAGGGATGCAATCAAGAGA+CGG | 0.653217 | 5_3:+16961659 | Msa0802540:CDS |
| TGAAGACATGCGAAATACTG+AGG | 0.655646 | 5_3:+16961486 | Msa0802540:CDS |
| GATCACAAAATCCAAAGGTG+TGG | 0.655821 | 5_3:-16961854 | None:intergenic |
| ATTGTCTTCGTAACCCATGG+TGG | 0.661409 | 5_3:-16958652 | None:intergenic |
| TACGACGACGTACAATCCGA+CGG | 0.665565 | 5_3:+16958800 | Msa0802540:CDS |
| GGACGGATCACAAAATCCAA+AGG | 0.667839 | 5_3:-16961859 | None:intergenic |
| AATAATCGCCCAATGTACTG+TGG | 0.667989 | 5_3:-16963375 | None:intergenic |
| GCCCTGATGTGAATCTCCTG+TGG | 0.680968 | 5_3:+16963208 | Msa0802540:three_prime_UTR |
| ACAGTGATTGAAATTTGATG+GGG | 0.683988 | 5_3:+16963253 | Msa0802540:three_prime_UTR |
| ACGTCGTCGTAATCCATCAA+CGG | 0.684522 | 5_3:-16958788 | None:intergenic |
| CAGTGATTGAAATTTGATGG+GGG | 0.705545 | 5_3:+16963254 | Msa0802540:three_prime_UTR |
| AAAAGTGGGAATGATCGTGA+AGG | 0.734592 | 5_3:+16959160 | Msa0802540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCAATTTCAATTTTTTT+AGG | + | chr5_3:16958744-16958763 | Msa0802540:intron | 10.0% |
| !! | AAAATCTTACTAAAAATTAA+GGG | - | chr5_3:16960158-16960177 | None:intergenic | 10.0% |
| !! | AAAAATCTTACTAAAAATTA+AGG | - | chr5_3:16960159-16960178 | None:intergenic | 10.0% |
| !! | ATTAAAATTGAATGATGAAA+AGG | - | chr5_3:16959252-16959271 | None:intergenic | 15.0% |
| !! | AAATTGTGTATTTAAAAGAT+GGG | + | chr5_3:16959353-16959372 | Msa0802540:intron | 15.0% |
| !! | GAAAAGTTATTGTTAAAATA+AGG | - | chr5_3:16960676-16960695 | None:intergenic | 15.0% |
| !! | TAAATTTATAATTGTAATGC+AGG | + | chr5_3:16961782-16961801 | Msa0802540:intron | 15.0% |
| !!! | TAATCAAACTTAAAAGTATT+TGG | - | chr5_3:16963086-16963105 | None:intergenic | 15.0% |
| !! | TTATTTATAAGAACTAGGAT+CGG | - | chr5_3:16958596-16958615 | None:intergenic | 20.0% |
| !! | GTGAATTATTTATAAGAACT+AGG | - | chr5_3:16958601-16958620 | None:intergenic | 20.0% |
| !! | CAAATTGTGTATTTAAAAGA+TGG | + | chr5_3:16959352-16959371 | Msa0802540:intron | 20.0% |
| !! | TCTTGTATGAAATCAATTAT+TGG | + | chr5_3:16960323-16960342 | Msa0802540:intron | 20.0% |
| !! | AAAATGACATAATAGAGAAA+AGG | - | chr5_3:16960380-16960399 | None:intergenic | 20.0% |
| !! | TTTATTAGTTGAGAATGTTA+TGG | + | chr5_3:16960496-16960515 | Msa0802540:CDS | 20.0% |
| !! | TTGATAAAAACATAATAACC+TGG | - | chr5_3:16961103-16961122 | None:intergenic | 20.0% |
| !!! | AGGTTATTATGTTTTTATCA+AGG | + | chr5_3:16961102-16961121 | Msa0802540:intron | 20.0% |
| !!! | ATTTACATTGATTTCTTCAT+CGG | - | chr5_3:16961129-16961148 | None:intergenic | 20.0% |
| !! | ATGAAGAAATCAATGTAAAT+AGG | + | chr5_3:16961129-16961148 | Msa0802540:CDS | 20.0% |
| !! | AATAAGATACAAGATAATGA+CGG | - | chr5_3:16961215-16961234 | None:intergenic | 20.0% |
| !! | TACTCTTATTAAATATAGGT+CGG | - | chr5_3:16961459-16961478 | None:intergenic | 20.0% |
| !!! | CTATATTTAATAAGAGTACT+CGG | + | chr5_3:16961461-16961480 | Msa0802540:CDS | 20.0% |
| !!! | ATTTCTATTTTTGAATTGCT+TGG | + | chr5_3:16961558-16961577 | Msa0802540:intron | 20.0% |
| !! | TTATTTATTGGCATAAAAAC+AGG | - | chr5_3:16962170-16962189 | None:intergenic | 20.0% |
| !! | AAACTATATAATCAAGCATA+TGG | - | chr5_3:16962267-16962286 | None:intergenic | 20.0% |
| !! | ATAGTTTCATGAATAAAAGT+TGG | + | chr5_3:16962280-16962299 | Msa0802540:intron | 20.0% |
| !!! | CTTTTTTACATGTATGTTTT+GGG | + | chr5_3:16962356-16962375 | Msa0802540:intron | 20.0% |
| !! | AACAGATTATTATAGAACAA+TGG | - | chr5_3:16962572-16962591 | None:intergenic | 20.0% |
| !! | CATCAGTATATAACTATATA+TGG | + | chr5_3:16962731-16962750 | Msa0802540:intron | 20.0% |
| !! | AACTATATATGGTTAAGTAT+AGG | + | chr5_3:16962742-16962761 | Msa0802540:intron | 20.0% |
| !!! | CTTTTAAGTTTGATTAATAC+TGG | + | chr5_3:16963090-16963109 | Msa0802540:exon | 20.0% |
| !! | TCATCAATTTAATGAAAGTT+TGG | + | chr5_3:16963455-16963474 | Msa0802540:three_prime_UTR | 20.0% |
| ! | TATTTATAAGAACTAGGATC+GGG | - | chr5_3:16958595-16958614 | None:intergenic | 25.0% |
| ! | TGAAAATTGTGTTGTGAATT+GGG | - | chr5_3:16958630-16958649 | None:intergenic | 25.0% |
| ! | TTGAAAATTGTGTTGTGAAT+TGG | - | chr5_3:16958631-16958650 | None:intergenic | 25.0% |
| !!! | TCTAGAATTTTTTCACGTTA+GGG | + | chr5_3:16958692-16958711 | Msa0802540:intron | 25.0% |
| ! | TTGATTAAGAAAAGTGATAC+CGG | + | chr5_3:16958953-16958972 | Msa0802540:CDS | 25.0% |
| !!! | AGTTTTGAGAGAACTTTTTA+GGG | + | chr5_3:16959419-16959438 | Msa0802540:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+CGG | + | chr5_3:16959687-16959706 | Msa0802540:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr5_3:16959804-16959823 | Msa0802540:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr5_3:16959687-16959706 | Msa0802540:intron | 25.0% |
| ! | TCTCTATGATATGTACTTTA+TGG | + | chr5_3:16959859-16959878 | Msa0802540:intron | 25.0% |
| ! | TGACTAATAATGATCTATCA+GGG | - | chr5_3:16959902-16959921 | None:intergenic | 25.0% |
| ! | ATGACTAATAATGATCTATC+AGG | - | chr5_3:16959903-16959922 | None:intergenic | 25.0% |
| !! | TATTAGTCATGTCTTTTAGT+TGG | + | chr5_3:16959913-16959932 | Msa0802540:intron | 25.0% |
| !!! | ATTAGTCATGTCTTTTAGTT+GGG | + | chr5_3:16959914-16959933 | Msa0802540:intron | 25.0% |
| !!! | TGTTGTTTGGAGTAATATTT+TGG | + | chr5_3:16959955-16959974 | Msa0802540:intron | 25.0% |
| ! | CTGGAAAATGAAATATGTAA+TGG | + | chr5_3:16960248-16960267 | Msa0802540:intron | 25.0% |
| !!! | TATGTAATGGTTGTTTTTTG+AGG | + | chr5_3:16960261-16960280 | Msa0802540:intron | 25.0% |
| !!! | TCTCTATTATGTCATTTTCT+AGG | + | chr5_3:16960382-16960401 | Msa0802540:intron | 25.0% |
| ! | TGCTAAATTTATTGAAGAGT+TGG | + | chr5_3:16960747-16960766 | Msa0802540:CDS | 25.0% |
| ! | TTGCATCTAAATCATCATAA+TGG | - | chr5_3:16960859-16960878 | None:intergenic | 25.0% |
| ! | GATACAATGCTAAATAATCT+TGG | - | chr5_3:16960892-16960911 | None:intergenic | 25.0% |
| !!! | GTCTAAATGTAGTTTGTTAT+TGG | + | chr5_3:16961035-16961054 | Msa0802540:intron | 25.0% |
| !!! | TGTAGTTTGTTATTGGAATT+TGG | + | chr5_3:16961042-16961061 | Msa0802540:intron | 25.0% |
| ! | TGCTTTACAATTACCTAAAA+TGG | + | chr5_3:16961336-16961355 | Msa0802540:intron | 25.0% |
| ! | ACACATAAAATAATGTCTTC+AGG | - | chr5_3:16961368-16961387 | None:intergenic | 25.0% |
| ! | ACTAATAATGAACTCATGAA+AGG | - | chr5_3:16961396-16961415 | None:intergenic | 25.0% |
| ! | CGAGTACTCTTATTAAATAT+AGG | - | chr5_3:16961463-16961482 | None:intergenic | 25.0% |
| ! | TTTACTTATTGCATAGTAAC+AGG | + | chr5_3:16961587-16961606 | Msa0802540:intron | 25.0% |
| !! | TAGTTTTCTTGAACTTTTAC+AGG | + | chr5_3:16961621-16961640 | Msa0802540:intron | 25.0% |
| !! | ACCCTTTTATATCCTTTTTT+TGG | + | chr5_3:16961986-16962005 | Msa0802540:intron | 25.0% |
| ! | CCCAAAAAAAGGATATAAAA+GGG | - | chr5_3:16961990-16962009 | None:intergenic | 25.0% |
| !! | CCCTTTTATATCCTTTTTTT+GGG | + | chr5_3:16961987-16962006 | Msa0802540:intron | 25.0% |
| ! | ACCCAAAAAAAGGATATAAA+AGG | - | chr5_3:16961991-16962010 | None:intergenic | 25.0% |
| !! | TTTTATGCCAATAAATAAGC+AGG | + | chr5_3:16962172-16962191 | Msa0802540:intron | 25.0% |
| ! | AAAGTTGGATGATTTAAACA+TGG | + | chr5_3:16962295-16962314 | Msa0802540:intron | 25.0% |
| ! | AAGTTGGATGATTTAAACAT+GGG | + | chr5_3:16962296-16962315 | Msa0802540:intron | 25.0% |
| ! | CCAAAACATACATGTAAAAA+AGG | - | chr5_3:16962358-16962377 | None:intergenic | 25.0% |
| !!! | CCTTTTTTACATGTATGTTT+TGG | + | chr5_3:16962355-16962374 | Msa0802540:intron | 25.0% |
| !!! | TTCTGATATTTTGGATAGAA+TGG | + | chr5_3:16962382-16962401 | Msa0802540:intron | 25.0% |
| !!! | TCTGATATTTTGGATAGAAT+GGG | + | chr5_3:16962383-16962402 | Msa0802540:intron | 25.0% |
| !!! | TTTTGGTTTAAATTTCAGCA+AGG | + | chr5_3:16962413-16962432 | Msa0802540:intron | 25.0% |
| ! | AAGAAAAAAAAACAACAGCA+TGG | - | chr5_3:16962622-16962641 | None:intergenic | 25.0% |
| ! | CAACAAATAATATGCATACA+GGG | - | chr5_3:16962646-16962665 | None:intergenic | 25.0% |
| ! | ACAACAAATAATATGCATAC+AGG | - | chr5_3:16962647-16962666 | None:intergenic | 25.0% |
| !! | CAGAAAGATTTAGAATTTCA+AGG | - | chr5_3:16962858-16962877 | None:intergenic | 25.0% |
| ! | TTGATTAATACTGGATCAAT+TGG | + | chr5_3:16963099-16963118 | Msa0802540:three_prime_UTR | 25.0% |
| !!! | TATTTTGATGACATAAATGC+GGG | - | chr5_3:16963305-16963324 | None:intergenic | 25.0% |
| !!! | GTATTTTGATGACATAAATG+CGG | - | chr5_3:16963306-16963325 | None:intergenic | 25.0% |
| ! | TCATGCATACAAAATAAATG+CGG | - | chr5_3:16963340-16963359 | None:intergenic | 25.0% |
| ! | TTTAATGAAAGTTTGGATTC+TGG | + | chr5_3:16963462-16963481 | Msa0802540:three_prime_UTR | 25.0% |
| GAAAATTGTGTTGTGAATTG+GGG | - | chr5_3:16958629-16958648 | None:intergenic | 30.0% | |
| TCTAGAGAGATAGAAACTTA+CGG | - | chr5_3:16958678-16958697 | None:intergenic | 30.0% | |
| !!! | CTCTAGAATTTTTTCACGTT+AGG | + | chr5_3:16958691-16958710 | Msa0802540:intron | 30.0% |
| GCTTATTTGTTCTTATCTAC+CGG | + | chr5_3:16959389-16959408 | Msa0802540:intron | 30.0% | |
| !!! | CAGTTTTGAGAGAACTTTTT+AGG | + | chr5_3:16959418-16959437 | Msa0802540:intron | 30.0% |
| !!! | GTTTTGAGAGAACTTTTTAG+GGG | + | chr5_3:16959420-16959439 | Msa0802540:intron | 30.0% |
| TAAACACTTGTGAGATAGTT+TGG | + | chr5_3:16959480-16959499 | Msa0802540:intron | 30.0% | |
| AAACACTTGTGAGATAGTTT+GGG | + | chr5_3:16959481-16959500 | Msa0802540:intron | 30.0% | |
| AGAACTTATAAAGACAGCTT+AGG | + | chr5_3:16959504-16959523 | Msa0802540:intron | 30.0% | |
| ! | GTTTTCATAAGCTAACTTAG+AGG | - | chr5_3:16959568-16959587 | None:intergenic | 30.0% |
| !! | TTAGTCATGTCTTTTAGTTG+GGG | + | chr5_3:16959915-16959934 | Msa0802540:intron | 30.0% |
| !! | TTGTTTTTCTCTGTGTTGTT+TGG | + | chr5_3:16959942-16959961 | Msa0802540:intron | 30.0% |
| ! | CTGATTTGAAGAACTTGAAA+TGG | - | chr5_3:16960218-16960237 | None:intergenic | 30.0% |
| !!! | TTTTTGAGGTCAAACTTTCT+CGG | + | chr5_3:16960275-16960294 | Msa0802540:intron | 30.0% |
| !! | AATCAAGGATCTTTTCAAGA+TGG | + | chr5_3:16960430-16960449 | Msa0802540:CDS | 30.0% |
| !! | ATCAAGGATCTTTTCAAGAT+GGG | + | chr5_3:16960431-16960450 | Msa0802540:CDS | 30.0% |
| ACTAATAAAGCAATTTCTGC+AGG | - | chr5_3:16960485-16960504 | None:intergenic | 30.0% | |
| GTAACTGCATAACAAGAAAA+CGG | - | chr5_3:16960914-16960933 | None:intergenic | 30.0% | |
| ! | TCATAATGCTCTAGATCTAT+AGG | - | chr5_3:16960936-16960955 | None:intergenic | 30.0% |
| ATGTGAAGAAAACAACGATA+GGG | + | chr5_3:16961010-16961029 | Msa0802540:intron | 30.0% | |
| GGAATTTGGAAGTAATATTC+TGG | + | chr5_3:16961056-16961075 | Msa0802540:intron | 30.0% | |
| !! | GATATTTTCATTGTTTTGCC+AGG | + | chr5_3:16961082-16961101 | Msa0802540:intron | 30.0% |
| !! | CAAGGATTTGGTTGATAAAT+GGG | + | chr5_3:16961160-16961179 | Msa0802540:CDS | 30.0% |
| TAAACACTGTATAAAGCGAA+GGG | - | chr5_3:16961255-16961274 | None:intergenic | 30.0% | |
| TTAAACACTGTATAAAGCGA+AGG | - | chr5_3:16961256-16961275 | None:intergenic | 30.0% | |
| AAATGCTAGAGAAGAAAACT+TGG | + | chr5_3:16961274-16961293 | Msa0802540:intron | 30.0% | |
| AATGCTAGAGAAGAAAACTT+GGG | + | chr5_3:16961275-16961294 | Msa0802540:intron | 30.0% | |
| ! | TTGTTGTTCAGTTTCACTTA+AGG | + | chr5_3:16961733-16961752 | Msa0802540:intron | 30.0% |
| !!! | GTTGGTGTTTTTTAAGTTCT+GGG | + | chr5_3:16961955-16961974 | Msa0802540:intron | 30.0% |
| AGCTTAAAGAACCCAAAAAA+AGG | - | chr5_3:16962001-16962020 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTCTTTAAGCTTT+TGG | + | chr5_3:16962003-16962022 | Msa0802540:intron | 30.0% |
| !! | CTTTAAGCTTTTGGTGTATA+CGG | + | chr5_3:16962012-16962031 | Msa0802540:intron | 30.0% |
| AGGAGCAAAGTAAAAAAAGT+TGG | - | chr5_3:16962052-16962071 | None:intergenic | 30.0% | |
| ATGATTTAAACATGGGATAC+TGG | + | chr5_3:16962303-16962322 | Msa0802540:intron | 30.0% | |
| !! | AAGGCATTGAGCATTAATAT+TGG | - | chr5_3:16962339-16962358 | None:intergenic | 30.0% |
| !! | TTTGGGTGTTTCTGATATTT+TGG | + | chr5_3:16962373-16962392 | Msa0802540:intron | 30.0% |
| AAACATGATATCCACAAGTT+GGG | - | chr5_3:16962478-16962497 | None:intergenic | 30.0% | |
| AAAACATGATATCCACAAGT+TGG | - | chr5_3:16962479-16962498 | None:intergenic | 30.0% | |
| TTAGTAGAATTTGACCAATG+TGG | + | chr5_3:16962961-16962980 | Msa0802540:intron | 30.0% | |
| TCACAGTGATTGAAATTTGA+TGG | + | chr5_3:16963251-16963270 | Msa0802540:three_prime_UTR | 30.0% | |
| CACAGTGATTGAAATTTGAT+GGG | + | chr5_3:16963252-16963271 | Msa0802540:three_prime_UTR | 30.0% | |
| ACAGTGATTGAAATTTGATG+GGG | + | chr5_3:16963253-16963272 | Msa0802540:three_prime_UTR | 30.0% | |
| CATGCATACAAAATAAATGC+GGG | - | chr5_3:16963339-16963358 | None:intergenic | 30.0% | |
| AGTTGAACATGATAGAATCT+TGG | + | chr5_3:16963500-16963519 | Msa0802540:three_prime_UTR | 30.0% | |
| ! | ACACAATTTTCAATCCACCA+TGG | + | chr5_3:16958638-16958657 | Msa0802540:exon | 35.0% |
| ! | CACAATTTTCAATCCACCAT+GGG | + | chr5_3:16958639-16958658 | Msa0802540:exon | 35.0% |
| ! | TTTAGGTATCGTGATGAAGA+CGG | + | chr5_3:16958761-16958780 | Msa0802540:intron | 35.0% |
| ! | AGAAGATGTCGACAATTTTC+AGG | + | chr5_3:16958865-16958884 | Msa0802540:CDS | 35.0% |
| TTCTTAATCAACCGTTTCCT+CGG | - | chr5_3:16958944-16958963 | None:intergenic | 35.0% | |
| AAGGTGAAGTTAATGAGATG+TGG | + | chr5_3:16959179-16959198 | Msa0802540:CDS | 35.0% | |
| AGGTGAAGTTAATGAGATGT+GGG | + | chr5_3:16959180-16959199 | Msa0802540:CDS | 35.0% | |
| ! | CTGAGGTACATTTGTGATTT+TGG | + | chr5_3:16959221-16959240 | Msa0802540:intron | 35.0% |
| TCTCTCAAAACTGTTTATGC+CGG | - | chr5_3:16959411-16959430 | None:intergenic | 35.0% | |
| !! | AGAACTTTTTAGGGGATGTT+TGG | + | chr5_3:16959428-16959447 | Msa0802540:intron | 35.0% |
| GCTTATTTGTGCTTAACTAC+AGG | + | chr5_3:16959455-16959474 | Msa0802540:intron | 35.0% | |
| ! | GGTCTTATGTATGAGAATAG+TGG | + | chr5_3:16959708-16959727 | Msa0802540:intron | 35.0% |
| ! | GGTCTTATGTATGAGAATAG+TGG | + | chr5_3:16959708-16959727 | Msa0802540:intron | 35.0% |
| AATGATCTATCAGGGTAGAA+AGG | - | chr5_3:16959894-16959913 | None:intergenic | 35.0% | |
| ! | GTCATCAAGGATGATAATGA+AGG | + | chr5_3:16960018-16960037 | Msa0802540:intron | 35.0% |
| GTTATCATCATCCATATTCC+TGG | - | chr5_3:16960046-16960065 | None:intergenic | 35.0% | |
| GATAACTTTATAGACGACAC+TGG | + | chr5_3:16960060-16960079 | Msa0802540:CDS | 35.0% | |
| !!! | TTATGTCATTTTCTAGGCTG+AGG | + | chr5_3:16960388-16960407 | Msa0802540:intron | 35.0% |
| TGAGGAAGATGATGAAATCA+AGG | + | chr5_3:16960415-16960434 | Msa0802540:CDS | 35.0% | |
| !! | TCAAGGATCTTTTCAAGATG+GGG | + | chr5_3:16960432-16960451 | Msa0802540:CDS | 35.0% |
| AATCATCAGCTTACTTTGAG+AGG | - | chr5_3:16960619-16960638 | None:intergenic | 35.0% | |
| !! | CAGCTAGAGTTTTTAGATCA+CGG | + | chr5_3:16960722-16960741 | Msa0802540:CDS | 35.0% |
| GTCTGCCAAATATCAACATA+CGG | + | chr5_3:16960792-16960811 | Msa0802540:CDS | 35.0% | |
| GATGTGAAGAAAACAACGAT+AGG | + | chr5_3:16961009-16961028 | Msa0802540:intron | 35.0% | |
| TGTGAAGAAAACAACGATAG+GGG | + | chr5_3:16961011-16961030 | Msa0802540:intron | 35.0% | |
| ! | TGTAAATAGGAGATTAGCCA+AGG | + | chr5_3:16961142-16961161 | Msa0802540:CDS | 35.0% |
| CCATTTATCAACCAAATCCT+TGG | - | chr5_3:16961162-16961181 | None:intergenic | 35.0% | |
| !! | CCAAGGATTTGGTTGATAAA+TGG | + | chr5_3:16961159-16961178 | Msa0802540:CDS | 35.0% |
| GTCTTCTTTGTGTTGTGTTT+GGG | + | chr5_3:16961302-16961321 | Msa0802540:intron | 35.0% | |
| CTTATTGCATAGTAACAGGT+TGG | + | chr5_3:16961591-16961610 | Msa0802540:intron | 35.0% | |
| GATTTGGATCTTTCACAGTA+AGG | + | chr5_3:16961689-16961708 | Msa0802540:intron | 35.0% | |
| TATAATTGTAATGCAGGCCT+AGG | + | chr5_3:16961788-16961807 | Msa0802540:intron | 35.0% | |
| ! | ATCGGGGTCAATTTTAGATT+GGG | - | chr5_3:16961884-16961903 | None:intergenic | 35.0% |
| !!! | GGTTGGTGTTTTTTAAGTTC+TGG | + | chr5_3:16961954-16961973 | Msa0802540:intron | 35.0% |
| ATTTGCTTGTCATTGGAAGT+TGG | - | chr5_3:16962077-16962096 | None:intergenic | 35.0% | |
| ! | CAAAGGAATTTGCTTGTCAT+TGG | - | chr5_3:16962084-16962103 | None:intergenic | 35.0% |
| GCACACAAACTAAACTTCAA+AGG | - | chr5_3:16962101-16962120 | None:intergenic | 35.0% | |
| !! | TTGTGTGCTGCTTATATCAA+CGG | + | chr5_3:16962113-16962132 | Msa0802540:intron | 35.0% |
| !! | ATTTTGGATAGAATGGGTTC+TGG | + | chr5_3:16962389-16962408 | Msa0802540:intron | 35.0% |
| AAATCTCTGTGATCTCCATA+TGG | + | chr5_3:16962506-16962525 | Msa0802540:intron | 35.0% | |
| TTGTTTGATAAGTACACTGC+AGG | + | chr5_3:16962788-16962807 | Msa0802540:intron | 35.0% | |
| TGTTTGATAAGTACACTGCA+GGG | + | chr5_3:16962789-16962808 | Msa0802540:intron | 35.0% | |
| ATAAGAAATTGCAGCAGTTG+AGG | + | chr5_3:16963002-16963021 | Msa0802540:CDS | 35.0% | |
| TAAGAAATTGCAGCAGTTGA+GGG | + | chr5_3:16963003-16963022 | Msa0802540:CDS | 35.0% | |
| ACCAAAAAAGAAGCAACTTC+AGG | + | chr5_3:16963027-16963046 | Msa0802540:CDS | 35.0% | |
| CAGTACAACAATTCATGTCA+GGG | - | chr5_3:16963155-16963174 | None:intergenic | 35.0% | |
| TCAGTACAACAATTCATGTC+AGG | - | chr5_3:16963156-16963175 | None:intergenic | 35.0% | |
| CAGTGATTGAAATTTGATGG+GGG | + | chr5_3:16963254-16963273 | Msa0802540:three_prime_UTR | 35.0% | |
| TACAAAATAAATGCGGGACA+GGG | - | chr5_3:16963333-16963352 | None:intergenic | 35.0% | |
| ATACAAAATAAATGCGGGAC+AGG | - | chr5_3:16963334-16963353 | None:intergenic | 35.0% | |
| AAAGTAAAGCCACAGTACAT+TGG | + | chr5_3:16963366-16963385 | Msa0802540:three_prime_UTR | 35.0% | |
| AAGTAAAGCCACAGTACATT+GGG | + | chr5_3:16963367-16963386 | Msa0802540:three_prime_UTR | 35.0% | |
| TTTGGATTCTGGACACAAAT+TGG | + | chr5_3:16963473-16963492 | Msa0802540:three_prime_UTR | 35.0% | |
| ! | TCAAAATCGTCGAGTTGTTG+TGG | - | chr5_3:16958842-16958861 | None:intergenic | 40.0% |
| TGATACCGGAAAACAGTCAA+TGG | + | chr5_3:16958967-16958986 | Msa0802540:CDS | 40.0% | |
| AATTGGAGGAGGAAGATGAA+GGG | + | chr5_3:16959014-16959033 | Msa0802540:CDS | 40.0% | |
| !! | AGATTTGGTGGTTCTAAGAG+AGG | + | chr5_3:16959127-16959146 | Msa0802540:CDS | 40.0% |
| !! | GATTTGGTGGTTCTAAGAGA+GGG | + | chr5_3:16959128-16959147 | Msa0802540:CDS | 40.0% |
| !! | ATTTGGTGGTTCTAAGAGAG+GGG | + | chr5_3:16959129-16959148 | Msa0802540:CDS | 40.0% |
| AAAAGTGGGAATGATCGTGA+AGG | + | chr5_3:16959160-16959179 | Msa0802540:CDS | 40.0% | |
| AAAGATGGGTCTGTTTCGAT+TGG | + | chr5_3:16959367-16959386 | Msa0802540:intron | 40.0% | |
| CTCATACATAAGACCGTGTT+TGG | - | chr5_3:16959703-16959722 | None:intergenic | 40.0% | |
| CTCATACATAAGACCCTGTT+TGG | - | chr5_3:16959821-16959840 | None:intergenic | 40.0% | |
| !! | CTCTGTTGTTTCTGTCATCA+AGG | + | chr5_3:16960005-16960024 | Msa0802540:intron | 40.0% |
| !! | TAATGAAGGTGCCAGGAATA+TGG | + | chr5_3:16960032-16960051 | Msa0802540:CDS | 40.0% |
| TCATCGTAACCATACAAAGC+AGG | - | chr5_3:16960093-16960112 | None:intergenic | 40.0% | |
| GGGAATAAATCATCAACCTG+TGG | - | chr5_3:16960138-16960157 | None:intergenic | 40.0% | |
| TTCTTGAGTTTATTGACCGC+GGG | - | chr5_3:16960575-16960594 | None:intergenic | 40.0% | |
| CTTCTTGAGTTTATTGACCG+CGG | - | chr5_3:16960576-16960595 | None:intergenic | 40.0% | |
| GAGAGGACTTCTATAAGAAG+AGG | - | chr5_3:16960602-16960621 | None:intergenic | 40.0% | |
| CCATAACAGTCTAATGTAGC+AGG | - | chr5_3:16960643-16960662 | None:intergenic | 40.0% | |
| CCTGCTACATTAGACTGTTA+TGG | + | chr5_3:16960640-16960659 | Msa0802540:intron | 40.0% | |
| ! | CTTTTCACCTACTGTTTCAC+AGG | + | chr5_3:16960690-16960709 | Msa0802540:intron | 40.0% |
| GCTGTCCGTATGTTGATATT+TGG | - | chr5_3:16960800-16960819 | None:intergenic | 40.0% | |
| ! | TAGGAGATTAGCCAAGGATT+TGG | + | chr5_3:16961148-16961167 | Msa0802540:CDS | 40.0% |
| CTGTATAAAGCGAAGGGAAT+TGG | - | chr5_3:16961249-16961268 | None:intergenic | 40.0% | |
| CTAGAGAAGAAAACTTGGGT+GGG | + | chr5_3:16961279-16961298 | Msa0802540:intron | 40.0% | |
| TAGAGAAGAAAACTTGGGTG+GGG | + | chr5_3:16961280-16961299 | Msa0802540:intron | 40.0% | |
| GGTCTTCTTTGTGTTGTGTT+TGG | + | chr5_3:16961301-16961320 | Msa0802540:intron | 40.0% | |
| TGAAGACATGCGAAATACTG+AGG | + | chr5_3:16961486-16961505 | Msa0802540:CDS | 40.0% | |
| TGCGAAATACTGAGGATGAT+AGG | + | chr5_3:16961494-16961513 | Msa0802540:CDS | 40.0% | |
| GCGAAATACTGAGGATGATA+GGG | + | chr5_3:16961495-16961514 | Msa0802540:CDS | 40.0% | |
| !! | CAAGCGTACTTTTTAACCGA+TGG | - | chr5_3:16961535-16961554 | None:intergenic | 40.0% |
| AAGAGACGGTGATCTTGATT+TGG | + | chr5_3:16961673-16961692 | Msa0802540:CDS | 40.0% | |
| AGTTTCACTTAAGGAATCGC+TGG | + | chr5_3:16961742-16961761 | Msa0802540:intron | 40.0% | |
| !! | AGGAATCGCTGGTTTATAGT+TGG | + | chr5_3:16961753-16961772 | Msa0802540:intron | 40.0% |
| !! | CGCTGGTTTATAGTTGGATA+TGG | + | chr5_3:16961759-16961778 | Msa0802540:intron | 40.0% |
| GATCACAAAATCCAAAGGTG+TGG | - | chr5_3:16961857-16961876 | None:intergenic | 40.0% | |
| ! | GGTCAATTTTAGATTGGGGA+CGG | - | chr5_3:16961879-16961898 | None:intergenic | 40.0% |
| ! | TCGGGGTCAATTTTAGATTG+GGG | - | chr5_3:16961883-16961902 | None:intergenic | 40.0% |
| ! | CATCGGGGTCAATTTTAGAT+TGG | - | chr5_3:16961885-16961904 | None:intergenic | 40.0% |
| CTTGTCATTGGAAGTTGGAA+AGG | - | chr5_3:16962072-16962091 | None:intergenic | 40.0% | |
| TCACACGCCTGCTTATTTAT+TGG | - | chr5_3:16962182-16962201 | None:intergenic | 40.0% | |
| AAGCACAATGTAAAGTCGCT+AGG | - | chr5_3:16962221-16962240 | None:intergenic | 40.0% | |
| CAAGCATATGGCATGTGATA+TGG | - | chr5_3:16962255-16962274 | None:intergenic | 40.0% | |
| !!! | ATAGAATGGGTTCTGGCTTT+TGG | + | chr5_3:16962396-16962415 | Msa0802540:intron | 40.0% |
| AATGGGTGCAAAACACCATA+TGG | - | chr5_3:16962524-16962543 | None:intergenic | 40.0% | |
| ACAGCATTAGGCCAAAGAAT+GGG | - | chr5_3:16962541-16962560 | None:intergenic | 40.0% | |
| AACAGCATTAGGCCAAAGAA+TGG | - | chr5_3:16962542-16962561 | None:intergenic | 40.0% | |
| ATGGTACCAGAAACAGCATT+AGG | - | chr5_3:16962553-16962572 | None:intergenic | 40.0% | |
| GAATCTACGCTAGTCATGAA+CGG | + | chr5_3:16962592-16962611 | Msa0802540:intron | 40.0% | |
| ! | TTCTCACACTCACGGTATTT+TGG | - | chr5_3:16962687-16962706 | None:intergenic | 40.0% |
| AAATACCGTGAGTGTGAGAA+TGG | + | chr5_3:16962687-16962706 | Msa0802540:intron | 40.0% | |
| AATACCGTGAGTGTGAGAAT+GGG | + | chr5_3:16962688-16962707 | Msa0802540:intron | 40.0% | |
| CTGCAGTTAACAATCCACAT+TGG | - | chr5_3:16962978-16962997 | None:intergenic | 40.0% | |
| !!! | GCCTGAAGTTGCTTCTTTTT+TGG | - | chr5_3:16963031-16963050 | None:intergenic | 40.0% |
| !! | ACTGGATCAATTGGTTTGTC+CGG | + | chr5_3:16963108-16963127 | Msa0802540:three_prime_UTR | 40.0% |
| !! | CATCTGCTGCACATTTTAAC+TGG | - | chr5_3:16963187-16963206 | None:intergenic | 40.0% |
| ACAAAATAAATGCGGGACAG+GGG | - | chr5_3:16963332-16963351 | None:intergenic | 40.0% | |
| AATAATCGCCCAATGTACTG+TGG | - | chr5_3:16963378-16963397 | None:intergenic | 40.0% | |
| GTGCAAGGTTGTGAAGAAGA+AGG | - | chr5_3:16958567-16958586 | None:intergenic | 45.0% | |
| ! | TAGGATCGGGTTTTTGTGCA+AGG | - | chr5_3:16958582-16958601 | None:intergenic | 45.0% |
| ATTGTCTTCGTAACCCATGG+TGG | - | chr5_3:16958655-16958674 | None:intergenic | 45.0% | |
| ACGTCGTCGTAATCCATCAA+CGG | - | chr5_3:16958791-16958810 | None:intergenic | 45.0% | |
| !! | ACAATTTTCAGGATCGTGCC+CGG | + | chr5_3:16958876-16958895 | Msa0802540:CDS | 45.0% |
| GACGAATCGTTGTCGTAAAC+CGG | - | chr5_3:16958911-16958930 | None:intergenic | 45.0% | |
| ATTCGTCGAAATCAAAGCCG+AGG | + | chr5_3:16958924-16958943 | Msa0802540:CDS | 45.0% | |
| CGAAATCAAAGCCGAGGAAA+CGG | + | chr5_3:16958930-16958949 | Msa0802540:CDS | 45.0% | |
| TCCAATTCATCTTCCAGCTC+CGG | - | chr5_3:16959001-16959020 | None:intergenic | 45.0% | |
| GAATTGGAGGAGGAAGATGA+AGG | + | chr5_3:16959013-16959032 | Msa0802540:CDS | 45.0% | |
| AAGGGAGGAAGAGGAAGAAA+GGG | + | chr5_3:16959032-16959051 | Msa0802540:CDS | 45.0% | |
| AGGAAGAAAGGGAAGGAAAG+TGG | + | chr5_3:16959043-16959062 | Msa0802540:CDS | 45.0% | |
| GGAAGAAAGGGAAGGAAAGT+GGG | + | chr5_3:16959044-16959063 | Msa0802540:CDS | 45.0% | |
| AAGAAGGAGAAGAGGCTGAA+AGG | + | chr5_3:16959073-16959092 | Msa0802540:CDS | 45.0% | |
| AGAAGGAGAAGAGGCTGAAA+GGG | + | chr5_3:16959074-16959093 | Msa0802540:CDS | 45.0% | |
| ! | GGTAGTGGTAGTAGTGGAAA+GGG | + | chr5_3:16959097-16959116 | Msa0802540:CDS | 45.0% |
| ! | TGCACTTGCTGGAAATTCTG+AGG | + | chr5_3:16959204-16959223 | Msa0802540:CDS | 45.0% |
| CTATCAGGGTAGAAAGGAGA+GGG | - | chr5_3:16959888-16959907 | None:intergenic | 45.0% | |
| TCTATCAGGGTAGAAAGGAG+AGG | - | chr5_3:16959889-16959908 | None:intergenic | 45.0% | |
| !! | AGGATGATAATGAAGGTGCC+AGG | + | chr5_3:16960025-16960044 | Msa0802540:intron | 45.0% |
| GGAGTAGAACCTGCTTTGTA+TGG | + | chr5_3:16960081-16960100 | Msa0802540:CDS | 45.0% | |
| TCAAATCAGCTGTAGAGTGC+TGG | + | chr5_3:16960229-16960248 | Msa0802540:intron | 45.0% | |
| !! | GTCATTTTCTAGGCTGAGGA+AGG | + | chr5_3:16960392-16960411 | Msa0802540:intron | 45.0% |
| GAATGTTATGGCTGAGCTTG+AGG | + | chr5_3:16960508-16960527 | Msa0802540:CDS | 45.0% | |
| AAGAGGACGCTGAGCTTAAT+CGG | + | chr5_3:16960540-16960559 | Msa0802540:CDS | 45.0% | |
| ! | GCTGTTTCCTGTGAAACAGT+AGG | - | chr5_3:16960700-16960719 | None:intergenic | 45.0% |
| ATATTTGGCAGACTCCCATC+AGG | - | chr5_3:16960785-16960804 | None:intergenic | 45.0% | |
| AGAGAACAGCTGAAGAGAAG+TGG | + | chr5_3:16960960-16960979 | Msa0802540:CDS | 45.0% | |
| ! | GAAGAGAAGTGGTCTTGGAA+AGG | + | chr5_3:16960971-16960990 | Msa0802540:CDS | 45.0% |
| GCTAGAGAAGAAAACTTGGG+TGG | + | chr5_3:16961278-16961297 | Msa0802540:intron | 45.0% | |
| !! | CTTCAGGAGTCAGCCATTTT+AGG | - | chr5_3:16961352-16961371 | None:intergenic | 45.0% |
| AGGATGATAGGGTTCCTTAC+AGG | + | chr5_3:16961506-16961525 | Msa0802540:CDS | 45.0% | |
| ATGATAGGGTTCCTTACAGG+AGG | + | chr5_3:16961509-16961528 | Msa0802540:CDS | 45.0% | |
| ! | AAATCCAAAGGTGTGGCTTC+TGG | - | chr5_3:16961850-16961869 | None:intergenic | 45.0% |
| GGACGGATCACAAAATCCAA+AGG | - | chr5_3:16961862-16961881 | None:intergenic | 45.0% | |
| TGCTCGTGCTCTGATTTCAT+CGG | - | chr5_3:16961902-16961921 | None:intergenic | 45.0% | |
| ACAAGACCAGCATCGTATGA+AGG | + | chr5_3:16961933-16961952 | Msa0802540:CDS | 45.0% | |
| !! | ACGGTGACGTTTCTAGTGTA+TGG | + | chr5_3:16962132-16962151 | Msa0802540:intron | 45.0% |
| !! | CGGTGACGTTTCTAGTGTAT+GGG | + | chr5_3:16962133-16962152 | Msa0802540:intron | 45.0% |
| !! | GGTGACGTTTCTAGTGTATG+GGG | + | chr5_3:16962134-16962153 | Msa0802540:intron | 45.0% |
| ! | TTTCTAGTGTATGGGGCAGA+TGG | + | chr5_3:16962141-16962160 | Msa0802540:intron | 45.0% |
| ! | TCCACAAGTTGGGAATGCAA+GGG | - | chr5_3:16962468-16962487 | None:intergenic | 45.0% |
| ! | ATCCACAAGTTGGGAATGCA+AGG | - | chr5_3:16962469-16962488 | None:intergenic | 45.0% |
| ! | GGTGTTTTGCACCCATTCTT+TGG | + | chr5_3:16962527-16962546 | Msa0802540:intron | 45.0% |
| !! | CTTTGGCCTAATGCTGTTTC+TGG | + | chr5_3:16962544-16962563 | Msa0802540:intron | 45.0% |
| ATACCGTGAGTGTGAGAATG+GGG | + | chr5_3:16962689-16962708 | Msa0802540:intron | 45.0% | |
| ATATACTGATGCATCCCTGC+TGG | - | chr5_3:16962722-16962741 | None:intergenic | 45.0% | |
| !! | GCTACAAAACTGAGTGTCGA+AGG | + | chr5_3:16963049-16963068 | Msa0802540:CDS | 45.0% |
| ATCTCCTGTGGCATCTATGT+CGG | + | chr5_3:16963220-16963239 | Msa0802540:three_prime_UTR | 45.0% | |
| ATGACATAAATGCGGGACAG+GGG | - | chr5_3:16963298-16963317 | None:intergenic | 45.0% | |
| GATGACATAAATGCGGGACA+GGG | - | chr5_3:16963299-16963318 | None:intergenic | 45.0% | |
| TGATGACATAAATGCGGGAC+AGG | - | chr5_3:16963300-16963319 | None:intergenic | 45.0% | |
| CGGATTGTCTTCGTAACCCA+TGG | - | chr5_3:16958658-16958677 | None:intergenic | 50.0% | |
| TGAAGACGGTGAACCGTTGA+TGG | + | chr5_3:16958775-16958794 | Msa0802540:CDS | 50.0% | |
| TACGACGACGTACAATCCGA+CGG | + | chr5_3:16958800-16958819 | Msa0802540:CDS | 50.0% | |
| !! | CAGCGCCATTGACTGTTTTC+CGG | - | chr5_3:16958975-16958994 | None:intergenic | 50.0% |
| AATTCATCTTCCAGCTCCGG+TGG | - | chr5_3:16958998-16959017 | None:intergenic | 50.0% | |
| ACCGGAGCTGGAAGATGAAT+TGG | + | chr5_3:16958997-16959016 | Msa0802540:CDS | 50.0% | |
| GGAGCTGGAAGATGAATTGG+AGG | + | chr5_3:16959000-16959019 | Msa0802540:CDS | 50.0% | |
| GCTGGAAGATGAATTGGAGG+AGG | + | chr5_3:16959003-16959022 | Msa0802540:CDS | 50.0% | |
| AGGAAGATGAAGGGAGGAAG+AGG | + | chr5_3:16959023-16959042 | Msa0802540:CDS | 50.0% | |
| GAAGGGAGGAAGAGGAAGAA+AGG | + | chr5_3:16959031-16959050 | Msa0802540:CDS | 50.0% | |
| GAGGAAGAGGAAGAAAGGGA+AGG | + | chr5_3:16959036-16959055 | Msa0802540:CDS | 50.0% | |
| AAAGGGAAGGAAAGTGGGTC+TGG | + | chr5_3:16959049-16959068 | Msa0802540:CDS | 50.0% | |
| AAGGGAAGGAAAGTGGGTCT+GGG | + | chr5_3:16959050-16959069 | Msa0802540:CDS | 50.0% | |
| GAAGGAGAAGAGGCTGAAAG+GGG | + | chr5_3:16959075-16959094 | Msa0802540:CDS | 50.0% | |
| AAGGAGAAGAGGCTGAAAGG+GGG | + | chr5_3:16959076-16959095 | Msa0802540:CDS | 50.0% | |
| ! | AAAGGGGGTAGTGGTAGTAG+TGG | + | chr5_3:16959091-16959110 | Msa0802540:CDS | 50.0% |
| ! | GGGTAGTGGTAGTAGTGGAA+AGG | + | chr5_3:16959096-16959115 | Msa0802540:CDS | 50.0% |
| ! | AGTGGTAGTAGTGGAAAGGG+TGG | + | chr5_3:16959100-16959119 | Msa0802540:CDS | 50.0% |
| ! | GTGGTAGTAGTGGAAAGGGT+GGG | + | chr5_3:16959101-16959120 | Msa0802540:CDS | 50.0% |
| GGAAAGGGTGGGTCTAGATT+TGG | + | chr5_3:16959112-16959131 | Msa0802540:CDS | 50.0% | |
| AAGGGTGGGTCTAGATTTGG+TGG | + | chr5_3:16959115-16959134 | Msa0802540:CDS | 50.0% | |
| !! | GTTCTAAGAGAGGGGTTGGT+GGG | + | chr5_3:16959137-16959156 | Msa0802540:CDS | 50.0% |
| TTTCTAGGCTGAGGAAGGTG+AGG | + | chr5_3:16960397-16960416 | Msa0802540:intron | 50.0% | |
| GCTTGAGGTTACAGCAGAAG+AGG | + | chr5_3:16960523-16960542 | Msa0802540:CDS | 50.0% | |
| CAGCTGAAGAGAAGTGGTCT+TGG | + | chr5_3:16960966-16960985 | Msa0802540:CDS | 50.0% | |
| TTAACCGATGGCCTCCTGTA+AGG | - | chr5_3:16961523-16961542 | None:intergenic | 50.0% | |
| ! | ATCCCTGCAGCTTTAGTTGC+TGG | - | chr5_3:16961647-16961666 | None:intergenic | 50.0% |
| GCAGGGATGCAATCAAGAGA+CGG | + | chr5_3:16961659-16961678 | Msa0802540:CDS | 50.0% | |
| TTGTAATGCAGGCCTAGGTC+CGG | + | chr5_3:16961793-16961812 | Msa0802540:intron | 50.0% | |
| CTTCCAGGCAACATGCATCA+AGG | + | chr5_3:16961824-16961843 | Msa0802540:CDS | 50.0% | |
| CTCGTGCTCTGATTTCATCG+GGG | - | chr5_3:16961900-16961919 | None:intergenic | 50.0% | |
| GCTCGTGCTCTGATTTCATC+GGG | - | chr5_3:16961901-16961920 | None:intergenic | 50.0% | |
| GACCAGCATCGTATGAAGGT+TGG | + | chr5_3:16961937-16961956 | Msa0802540:intron | 50.0% | |
| CACCAACCTTCATACGATGC+TGG | - | chr5_3:16961942-16961961 | None:intergenic | 50.0% | |
| TCCCTTGCATTCCCAACTTG+TGG | + | chr5_3:16962464-16962483 | Msa0802540:intron | 50.0% | |
| TACCGTGAGTGTGAGAATGG+GGG | + | chr5_3:16962690-16962709 | Msa0802540:intron | 50.0% | |
| !! | AAACTGAGTGTCGAAGGTCG+TGG | + | chr5_3:16963055-16963074 | Msa0802540:CDS | 50.0% |
| !! | ATTGGTTTGTCCGGCAAGCT+TGG | + | chr5_3:16963117-16963136 | Msa0802540:three_prime_UTR | 50.0% |
| GCGCATTATACCAAGCTTGC+CGG | - | chr5_3:16963130-16963149 | None:intergenic | 50.0% | |
| GCCACAGGAGATTCACATCA+GGG | - | chr5_3:16963212-16963231 | None:intergenic | 50.0% | |
| TGCCACAGGAGATTCACATC+AGG | - | chr5_3:16963213-16963232 | None:intergenic | 50.0% | |
| ! | TCGTCGAGTTGTTGTGGCTC+CGG | - | chr5_3:16958836-16958855 | None:intergenic | 55.0% |
| TGGAGGAGGAAGATGAAGGG+AGG | + | chr5_3:16959017-16959036 | Msa0802540:CDS | 55.0% | |
| GGAAAGTGGGTCTGGGAAGA+AGG | + | chr5_3:16959057-16959076 | Msa0802540:CDS | 55.0% | |
| GGTCTGGGAAGAAGGAGAAG+AGG | + | chr5_3:16959065-16959084 | Msa0802540:CDS | 55.0% | |
| AAGAGGCTGAAAGGGGGTAG+TGG | + | chr5_3:16959082-16959101 | Msa0802540:CDS | 55.0% | |
| !! | GGTGGTTCTAAGAGAGGGGT+TGG | + | chr5_3:16959133-16959152 | Msa0802540:CDS | 55.0% |
| !! | GGTTCTAAGAGAGGGGTTGG+TGG | + | chr5_3:16959136-16959155 | Msa0802540:CDS | 55.0% |
| !! | AGAGGGGTTGGTGGGAAAAG+TGG | + | chr5_3:16959145-16959164 | Msa0802540:CDS | 55.0% |
| !! | GAGGGGTTGGTGGGAAAAGT+GGG | + | chr5_3:16959146-16959165 | Msa0802540:CDS | 55.0% |
| GAGATGTGGGATGCACTTGC+TGG | + | chr5_3:16959193-16959212 | Msa0802540:CDS | 55.0% | |
| TACGATGAACCGCGTTCTCC+TGG | + | chr5_3:16960105-16960124 | Msa0802540:CDS | 55.0% | |
| TGGCTTGAGCCACTTCCTGA+TGG | + | chr5_3:16960767-16960786 | Msa0802540:CDS | 55.0% | |
| GGCTTGAGCCACTTCCTGAT+GGG | + | chr5_3:16960768-16960787 | Msa0802540:CDS | 55.0% | |
| GGTTCCTTACAGGAGGCCAT+CGG | + | chr5_3:16961516-16961535 | Msa0802540:CDS | 55.0% | |
| AGGCCAGCAACTAAAGCTGC+AGG | + | chr5_3:16961641-16961660 | Msa0802540:intron | 55.0% | |
| GGCCAGCAACTAAAGCTGCA+GGG | + | chr5_3:16961642-16961661 | Msa0802540:intron | 55.0% | |
| TTGCCTGGAAGACGACTCTC+CGG | - | chr5_3:16961815-16961834 | None:intergenic | 55.0% | |
| ! | TGGCCTTGATGCATGTTGCC+TGG | - | chr5_3:16961830-16961849 | None:intergenic | 55.0% |
| AAGGCCAGAAGCCACACCTT+TGG | + | chr5_3:16961843-16961862 | Msa0802540:CDS | 55.0% | |
| TGCCCCCATTCTCACACTCA+CGG | - | chr5_3:16962695-16962714 | None:intergenic | 55.0% | |
| ! | AATGGGGGCATATGCCAGCA+GGG | + | chr5_3:16962705-16962724 | Msa0802540:intron | 55.0% |
| !! | GAGTGTCGAAGGTCGTGGTA+TGG | + | chr5_3:16963060-16963079 | Msa0802540:CDS | 55.0% |
| GCCCTGATGTGAATCTCCTG+TGG | + | chr5_3:16963208-16963227 | Msa0802540:three_prime_UTR | 55.0% | |
| GATGCCGACATAGATGCCAC+AGG | - | chr5_3:16963227-16963246 | None:intergenic | 55.0% | |
| GACGTACAATCCGACGGCGA+AGG | + | chr5_3:16958806-16958825 | Msa0802540:CDS | 60.0% | |
| ATCCGACGGCGAAGGATCAC+CGG | + | chr5_3:16958814-16958833 | Msa0802540:CDS | 60.0% | |
| GTAAACCGGCGTCTGTGACC+GGG | - | chr5_3:16958897-16958916 | None:intergenic | 60.0% | |
| CGTAAACCGGCGTCTGTGAC+CGG | - | chr5_3:16958898-16958917 | None:intergenic | 60.0% | |
| ACAGTCAATGGCGCTGCCAC+CGG | + | chr5_3:16958979-16958998 | Msa0802540:CDS | 60.0% | |
| TTCTCCTGGCGATGCTCCAC+AGG | + | chr5_3:16960119-16960138 | Msa0802540:CDS | 60.0% | |
| !! | TCAACCTGTGGAGCATCGCC+AGG | - | chr5_3:16960126-16960145 | None:intergenic | 60.0% |
| TAATCGGCAGCACAAGCCCG+CGG | + | chr5_3:16960556-16960575 | Msa0802540:CDS | 60.0% | |
| GGCAGACTCCCATCAGGAAG+TGG | - | chr5_3:16960779-16960798 | None:intergenic | 60.0% | |
| GAAGACGACTCTCCGGACCT+AGG | - | chr5_3:16961808-16961827 | None:intergenic | 60.0% | |
| ! | GAATGGGGGCATATGCCAGC+AGG | + | chr5_3:16962704-16962723 | Msa0802540:intron | 60.0% |
| CTCCGGTGATCCTTCGCCGT+CGG | - | chr5_3:16958819-16958838 | None:intergenic | 65.0% | |
| !! | GGAGCATCGCCAGGAGAACG+CGG | - | chr5_3:16960117-16960136 | None:intergenic | 65.0% |
| GGTCCGGAGAGTCGTCTTCC+AGG | + | chr5_3:16961809-16961828 | Msa0802540:CDS | 65.0% | |
| TCGTGCCCGGTCACAGACGC+CGG | + | chr5_3:16958889-16958908 | Msa0802540:CDS | 70.0% | |
| AATGGCGCTGCCACCGGAGC+TGG | + | chr5_3:16958985-16959004 | Msa0802540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16958548 | 16963535 | 16958548 | ID=Msa0802540;Name=Msa0802540 |
| chr5_3 | mRNA | 16958548 | 16963535 | 16958548 | ID=Msa0802540-mRNA-1;Parent=Msa0802540;Name=Msa0802540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=109|1|1|1|0.81|0.75|12|405|496 |
| chr5_3 | exon | 16958548 | 16958676 | 16958548 | ID=Msa0802540-mRNA-1:exon:7063;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16958766 | 16959225 | 16958766 | ID=Msa0802540-mRNA-1:exon:7064;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16960027 | 16960140 | 16960027 | ID=Msa0802540-mRNA-1:exon:7065;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16960404 | 16960624 | 16960404 | ID=Msa0802540-mRNA-1:exon:7066;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16960712 | 16960841 | 16960712 | ID=Msa0802540-mRNA-1:exon:7067;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16960930 | 16960992 | 16960930 | ID=Msa0802540-mRNA-1:exon:7068;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16961104 | 16961181 | 16961104 | ID=Msa0802540-mRNA-1:exon:7069;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16961454 | 16961545 | 16961454 | ID=Msa0802540-mRNA-1:exon:7070;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16961643 | 16961705 | 16961643 | ID=Msa0802540-mRNA-1:exon:7071;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16961804 | 16961954 | 16961804 | ID=Msa0802540-mRNA-1:exon:7072;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16962998 | 16963308 | 16962998 | ID=Msa0802540-mRNA-1:exon:7073;Parent=Msa0802540-mRNA-1 |
| chr5_3 | exon | 16963343 | 16963535 | 16963343 | ID=Msa0802540-mRNA-1:exon:7074;Parent=Msa0802540-mRNA-1 |
| chr5_3 | five_prime_UTR | 16958548 | 16958656 | 16958548 | ID=Msa0802540-mRNA-1:five_prime_utr;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16958657 | 16958676 | 16958657 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16958766 | 16959225 | 16958766 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16960027 | 16960140 | 16960027 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16960404 | 16960624 | 16960404 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16960712 | 16960841 | 16960712 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16960930 | 16960992 | 16960930 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16961104 | 16961181 | 16961104 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16961454 | 16961545 | 16961454 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16961643 | 16961705 | 16961643 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16961804 | 16961954 | 16961804 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | CDS | 16962998 | 16963096 | 16962998 | ID=Msa0802540-mRNA-1:cds;Parent=Msa0802540-mRNA-1 |
| chr5_3 | three_prime_UTR | 16963097 | 16963308 | 16963097 | ID=Msa0802540-mRNA-1:three_prime_utr;Parent=Msa0802540-mRNA-1 |
| chr5_3 | three_prime_UTR | 16963343 | 16963535 | 16963343 | ID=Msa0802540-mRNA-1:three_prime_utr;Parent=Msa0802540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
