AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803060 MtrunA17_Chr5g0410881 97.610 502 12 0 1 502 1 502 0.0 1011
Msa0803060 MtrunA17_Chr4g0039891 47.106 501 211 18 31 499 11 489 6.76e-126 376
Msa0803060 MtrunA17_Chr7g0260331 58.009 231 93 1 9 239 26 252 4.80e-89 277
Msa0803060 MtrunA17_Chr1g0204741 58.120 234 84 6 10 239 16 239 9.11e-83 259
Msa0803060 MtrunA17_Chr3g0135831 57.333 225 80 5 19 240 33 244 7.30e-82 259
Msa0803060 MtrunA17_Chr8g0392001 46.125 271 128 6 32 300 22 276 8.45e-67 219
Msa0803060 MtrunA17_Chr1g0185131 49.782 229 93 4 19 244 19 228 4.13e-66 217
Msa0803060 MtrunA17_Chr4g0071051 49.550 222 93 3 2 223 76 278 1.72e-65 218
Msa0803060 MtrunA17_Chr8g0379701 53.763 186 75 2 31 214 11 187 4.85e-64 213
Msa0803060 MtrunA17_Chr6g0467041 50.711 211 90 4 32 242 22 218 6.96e-64 210
Msa0803060 MtrunA17_Chr8g0378061 50.952 210 89 4 33 242 23 218 9.12e-63 212
Msa0803060 MtrunA17_Chr2g0330821 50.000 198 88 1 20 217 67 253 8.85e-61 203
Msa0803060 MtrunA17_Chr6g0485571 46.009 213 101 5 28 240 7 205 5.28e-55 187
Msa0803060 MtrunA17_Chr2g0284481 44.865 185 98 2 31 215 14 194 2.56e-51 179
Msa0803060 MtrunA17_Chr3g0134031 43.147 197 64 2 29 177 21 217 1.55e-45 163
Msa0803060 MtrunA17_Chr5g0397881 73.404 94 25 0 30 123 22 115 5.96e-45 161
Msa0803060 MtrunA17_Chr5g0441531 46.073 191 91 2 29 207 22 212 7.59e-44 155
Msa0803060 MtrunA17_Chr5g0402291 46.369 179 64 3 29 178 6 181 2.44e-42 152
Msa0803060 MtrunA17_Chr7g0257331 49.342 152 75 1 29 178 19 170 3.36e-42 150
Msa0803060 MtrunA17_Chr1g0203601 68.085 94 30 0 30 123 16 109 3.99e-42 152
Msa0803060 MtrunA17_Chr6g0472421 67.021 94 31 0 30 123 31 124 2.92e-40 148
Msa0803060 MtrunA17_Chr8g0375041 45.614 171 78 4 29 188 6 172 1.13e-38 141
Msa0803060 MtrunA17_Chr1g0179311 43.931 173 83 4 92 264 14 172 6.83e-36 137
Msa0803060 MtrunA17_Chr4g0047421 37.017 181 96 3 29 205 30 196 1.19e-32 124
Msa0803060 MtrunA17_Chr1g0179321 66.216 74 25 0 18 91 35 108 6.26e-28 107
Msa0803060 MtrunA17_Chr4g0023771 69.231 65 19 1 28 91 11 75 9.32e-26 101
Msa0803060 MtrunA17_Chr2g0330841 36.364 165 86 3 76 240 31 176 2.40e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803060 AT1G32330.2 54.028 509 168 14 9 496 11 474 2.03e-166 479
Msa0803060 AT1G32330.1 54.028 509 168 14 9 496 11 474 2.95e-166 479
Msa0803060 AT4G17750.1 49.153 531 189 15 1 501 16 495 6.21e-146 427
Msa0803060 AT5G16820.1 50.292 513 190 14 18 501 4 480 5.93e-137 404
Msa0803060 AT5G16820.2 50.292 513 190 14 18 501 4 480 5.93e-137 404
Msa0803060 AT3G02990.1 48.776 490 188 18 31 501 22 467 1.73e-125 374
Msa0803060 AT3G22830.1 57.080 226 96 1 14 239 43 267 1.29e-83 265
Msa0803060 AT2G26150.1 57.848 223 86 3 19 240 31 246 1.81e-82 259
Msa0803060 AT2G26150.4 57.848 223 86 3 19 240 31 246 1.81e-82 259
Msa0803060 AT3G51910.1 52.074 217 80 4 25 239 22 216 1.35e-68 221
Msa0803060 AT5G03720.2 46.800 250 122 3 14 263 37 275 9.39e-68 223
Msa0803060 AT5G03720.1 46.800 250 122 3 14 263 37 275 9.39e-68 223
Msa0803060 AT1G67970.1 53.125 192 82 3 32 222 19 203 8.08e-63 209
Msa0803060 AT4G13980.1 46.460 226 96 5 33 255 24 227 1.84e-62 211
Msa0803060 AT3G63350.1 46.919 211 99 2 18 226 12 211 1.15e-60 201
Msa0803060 AT5G43840.1 42.915 247 110 5 18 264 5 220 1.36e-59 198
Msa0803060 AT4G18880.1 45.540 213 107 2 25 234 8 214 4.73e-55 190
Msa0803060 AT5G45710.3 37.762 286 148 5 31 311 12 272 2.11e-53 184
Msa0803060 AT5G45710.1 37.762 286 148 5 31 311 12 272 2.11e-53 184
Msa0803060 AT3G24520.1 43.750 208 87 2 32 239 17 194 1.39e-52 181
Msa0803060 AT5G54070.1 43.519 216 101 3 32 243 71 269 5.22e-52 179
Msa0803060 AT1G46264.1 45.026 191 61 3 29 177 31 219 7.58e-45 161
Msa0803060 AT2G41690.1 42.473 186 83 2 30 195 38 219 3.68e-42 150
Msa0803060 AT2G26150.3 54.667 150 60 3 92 240 49 191 5.19e-42 152
Msa0803060 AT2G26150.2 54.667 150 60 3 92 240 49 191 5.19e-42 152
Msa0803060 AT4G11660.1 68.085 94 30 0 30 123 57 150 4.34e-41 152
Msa0803060 AT4G36990.1 56.557 122 40 1 29 150 11 119 1.17e-40 148
Msa0803060 AT5G62020.1 62.626 99 37 0 30 128 21 119 2.55e-40 147
Msa0803060 AT4G18870.1 47.727 88 46 0 32 119 146 233 3.03e-25 105
Msa0803060 AT4G18870.1 49.438 89 40 2 33 119 14 99 1.74e-22 97.8
Msa0803060 AT1G77570.1 42.222 90 49 2 33 119 27 116 1.59e-17 80.1
Msa0803060 AT4G19630.1 37.778 90 53 1 33 119 12 101 1.91e-13 67.8

Find 180 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGTTAAGCAATTCTATT+TGG 0.145481 5_3:-18016444 Msa0803060:CDS
TAAATGTTGAAAAGTGAAAT+TGG 0.170805 5_3:+18020881 None:intergenic
TCGGTGTCGGCGCCGGTATT+TGG 0.178029 5_3:+18020710 None:intergenic
ACAATTAGAAAACAATAATT+TGG 0.194455 5_3:+18015540 None:intergenic
AAAATTTCAAACAGGGTTTC+AGG 0.206273 5_3:-18017500 Msa0803060:intron
CCAACAACAGTTTCGTTGTT+TGG 0.230125 5_3:-18020594 Msa0803060:CDS
TGTGTAGAAGTCGGCAAATT+TGG 0.235613 5_3:-18017324 Msa0803060:CDS
TGAGGTACAGATAGAATTTC+AGG 0.240310 5_3:+18016712 None:intergenic
CGAGACAGATGATGGATTTA+TGG 0.242553 5_3:-18016533 Msa0803060:CDS
TCACCAATCAAGTAATTATC+AGG 0.249130 5_3:+18016886 None:intergenic
CATAGATGATTAAATTCTTT+TGG 0.258523 5_3:+18016264 None:intergenic
CAAAAGGTCCCTAGCGAATT+CGG 0.275635 5_3:+18020564 None:intergenic
GAAAAGGGGACAGGAGATTA+TGG 0.281982 5_3:+18020922 None:intergenic
TGGATCATTACCCATTGATT+TGG 0.296226 5_3:-18016497 Msa0803060:CDS
AAATGTTGAAAAGTGAAATT+GGG 0.296857 5_3:+18020882 None:intergenic
TTTGCTGTTTCATTCATCAT+AGG 0.311359 5_3:+18016970 None:intergenic
CAACAACAGTTTCGTTGTTT+GGG 0.319788 5_3:-18020593 Msa0803060:CDS
CGGTGTCGGCGCCGGTATTT+GGG 0.322223 5_3:+18020711 None:intergenic
CTTCTTATGTAACTGATTTG+TGG 0.343000 5_3:-18015707 Msa0803060:three_prime_UTR
CAACAGATGCGATAGTTTCA+TGG 0.344788 5_3:-18020624 Msa0803060:CDS
AACCCTGATAATTACTTGAT+TGG 0.346275 5_3:-18016889 Msa0803060:CDS
GTCGTTGCTCCATTCCTTGA+AGG 0.347154 5_3:+18017184 None:intergenic
GCCTCAAAATCCTCTGGAAT+TGG 0.349084 5_3:+18016403 None:intergenic
CCAATGTTATAGGAAATCTT+TGG 0.360135 5_3:-18015961 Msa0803060:intron
GTGTAGAAGTCGGCAAATTT+GGG 0.362865 5_3:-18017323 Msa0803060:CDS
TATACCTGAAGACAATTATA+TGG 0.363191 5_3:-18016560 Msa0803060:CDS
TTGAATTTGAAGGGAGAAAA+GGG 0.366189 5_3:+18020907 None:intergenic
ACATTACTCTGTTTAGTTGC+TGG 0.372084 5_3:-18015736 Msa0803060:three_prime_UTR
ACCAGGGCTTTGGACGGCTT+TGG 0.378818 5_3:+18017137 None:intergenic
TTTGCAAATTCCCAACGATC+TGG 0.381736 5_3:+18017468 None:intergenic
GCCGCTTGCTCCATCCATTT+CGG 0.386330 5_3:+18020762 None:intergenic
TCTGGTACTGAAGGTATATC+AGG 0.389774 5_3:+18016607 None:intergenic
TCTGCTCTGTTAGTTGATCC+AGG 0.390931 5_3:+18016308 None:intergenic
AAAACAAGAATTCTCCGAAA+TGG 0.393262 5_3:-18020776 Msa0803060:exon
CAAATTTGGGCTTGAGGAAG+AGG 0.394429 5_3:-18017310 Msa0803060:CDS
TTTAGCTCACTCAACTTAAA+GGG 0.395976 5_3:-18021028 None:intergenic
TTTGGGTGATCATACACTTT+GGG 0.397232 5_3:+18015838 None:intergenic
ACTCAAATTCCAATGTCAAC+AGG 0.397967 5_3:-18016766 Msa0803060:CDS
TTTGTTAAGCAATTCTATTT+GGG 0.398896 5_3:-18016443 Msa0803060:CDS
CTGATTTGTGGTGTTTCAAT+TGG 0.404882 5_3:-18015695 Msa0803060:three_prime_UTR
GAGCAAAGAAACCAGGGCTT+TGG 0.405473 5_3:+18017127 None:intergenic
TGCTAAGGAAGATCATGAAA+TGG 0.411880 5_3:-18016942 Msa0803060:CDS
GAGGTGCAGCCAACAGAAAA+TGG 0.412142 5_3:-18016352 Msa0803060:CDS
TATTTAACAATTTGTCCATC+AGG 0.412857 5_3:+18016997 None:intergenic
TCCCCAACTTGATGTTTCCT+TGG 0.422209 5_3:-18015903 Msa0803060:three_prime_UTR
ATTGAATTTGAAGGGAGAAA+AGG 0.423353 5_3:+18020906 None:intergenic
CACCAAGGAAACATCAAGTT+GGG 0.424460 5_3:+18015901 None:intergenic
GGAGCCATATAATTGTCTTC+AGG 0.427662 5_3:+18016556 None:intergenic
GTGCACTTGTCAGACACTTT+GGG 0.429146 5_3:+18015821 None:intergenic
TGGAATTGAATGCCACTAGA+TGG 0.429293 5_3:-18015647 Msa0803060:three_prime_UTR
CGTGCACTTGTCAGACACTT+TGG 0.432945 5_3:+18015820 None:intergenic
GCTTGAAGAACTTCGGCAAA+AGG 0.436166 5_3:+18020548 None:intergenic
AACAACAAAATGACAGCAAT+AGG 0.448374 5_3:-18017095 Msa0803060:CDS
GAAACTATCGCATCTGTTGA+AGG 0.449248 5_3:+18020628 None:intergenic
TGCAGCCAACAGAAAATGGC+TGG 0.460415 5_3:-18016348 Msa0803060:CDS
TGAAAGACAATCCAAATCAA+TGG 0.461549 5_3:+18016486 None:intergenic
GGCGCGTTCGCGTTTAGCAT+CGG 0.464774 5_3:+18020691 None:intergenic
GATGGAGCAAGCGGCGGAAG+TGG 0.466736 5_3:-18020754 Msa0803060:CDS
CTTTGGGTGATCATACACTT+TGG 0.467875 5_3:+18015837 None:intergenic
ACAATGGTTCAGCGCCTTCA+AGG 0.468085 5_3:-18017198 Msa0803060:CDS
GCTGAACCATTGTTTGCAGC+TGG 0.470479 5_3:+18017208 None:intergenic
GAAGGTTGACCCAGATCGTT+GGG 0.471844 5_3:-18017478 Msa0803060:CDS
CCATGGTCATACTCAACAAC+AGG 0.472356 5_3:-18017385 Msa0803060:CDS
CGTTGGGAATTTGCAAATGA+GGG 0.474986 5_3:-18017462 Msa0803060:CDS
ATGTTGGCCTCAAAATCCTC+TGG 0.479139 5_3:+18016397 None:intergenic
TTGAAGGGAGAAAAGGGGAC+AGG 0.481018 5_3:+18020913 None:intergenic
GCTAAGGAAGATCATGAAAT+GGG 0.481953 5_3:-18016941 Msa0803060:CDS
GGCGGAAGTGGCGGCGGAGA+GGG 0.482090 5_3:-18020742 Msa0803060:CDS
TTGAAGATTTACACAAGGAC+AGG 0.484498 5_3:-18015785 Msa0803060:three_prime_UTR
GAAAGACAATCCAAATCAAT+GGG 0.486613 5_3:+18016487 None:intergenic
GCCAAAGCCGTCCAAAGCCC+TGG 0.488993 5_3:-18017138 Msa0803060:CDS
CGGCGGAAGTGGCGGCGGAG+AGG 0.492052 5_3:-18020743 Msa0803060:CDS
ATAACATCTGCTTGAGAAGT+CGG 0.493923 5_3:+18016634 None:intergenic
TGGCTGCACCTCATTCCCTC+TGG 0.494605 5_3:+18016363 None:intergenic
CCAAACAACGAAACTGTTGT+TGG 0.495551 5_3:+18020594 None:intergenic
TTTAGCATCGGTGTCGGCGC+CGG 0.495901 5_3:+18020703 None:intergenic
CGAAATATCCAGAGGGAATG+AGG 0.497477 5_3:-18016371 Msa0803060:CDS
AAGAATGAGATAAAAGAGAA+TGG 0.499152 5_3:-18015667 Msa0803060:three_prime_UTR
AAAAGGTCCCTAGCGAATTC+GGG 0.501028 5_3:+18020565 None:intergenic
TAACATCTGCTTGAGAAGTC+GGG 0.501630 5_3:+18016635 None:intergenic
GGGACCCACCCGAATTCGCT+AGG 0.503998 5_3:-18020573 Msa0803060:CDS
AGCTCTACAAGCTGGAACTC+GGG 0.505067 5_3:-18016829 Msa0803060:CDS
ACTTGATGTTTCCTTGGTGA+TGG 0.506863 5_3:-18015897 Msa0803060:three_prime_UTR
GCAAGCGGCGGAAGTGGCGG+CGG 0.507070 5_3:-18020748 Msa0803060:CDS
CATAAATCCATCATCTGTCT+CGG 0.507108 5_3:+18016534 None:intergenic
CAAATCATCAATGTCTGCAC+CGG 0.507465 5_3:+18016462 None:intergenic
TCGTTGGGAATTTGCAAATG+AGG 0.508434 5_3:-18017463 Msa0803060:CDS
CTGCTCTGTTAGTTGATCCA+GGG 0.508669 5_3:+18016309 None:intergenic
CCTTGAGTCCCTGTTGACAT+TGG 0.509700 5_3:+18016757 None:intergenic
GGAGCAAGCGGCGGAAGTGG+CGG 0.510221 5_3:-18020751 Msa0803060:CDS
TGAGTAGACTGCACTGAAGA+TGG 0.510797 5_3:+18016784 None:intergenic
TTCGCGTTTAGCATCGGTGT+CGG 0.511333 5_3:+18020697 None:intergenic
TTTATGGATCCGAGTTCACT+TGG 0.511418 5_3:-18016517 Msa0803060:CDS
TCTGGATATTTCGTCAATGT+TGG 0.511981 5_3:+18016381 None:intergenic
TTGCAAATTCCCAACGATCT+GGG 0.513798 5_3:+18017469 None:intergenic
TTGTTATGCTTGAAGAACTT+CGG 0.516006 5_3:+18020541 None:intergenic
TCTGCAAATGTTATGAAGGA+TGG 0.520402 5_3:-18016679 Msa0803060:CDS
GGCTTTGGACGGCTTTGGCA+AGG 0.521460 5_3:+18017142 None:intergenic
GGTTCAGCGCCTTCAAGGAA+TGG 0.521472 5_3:-18017193 Msa0803060:CDS
AAATTTGGGAGAGTATGAAA+TGG 0.524206 5_3:-18015565 Msa0803060:three_prime_UTR
GGATCAACTAACAGAGCAGA+TGG 0.526736 5_3:-18016305 Msa0803060:CDS
AATTGGGGATTGAATTTGAA+GGG 0.527358 5_3:+18020898 None:intergenic
ATGGCTCCCGAGACAGATGA+TGG 0.528224 5_3:-18016541 Msa0803060:CDS
GGAAGGTTGACCCAGATCGT+TGG 0.529784 5_3:-18017479 Msa0803060:CDS
TAGCTCTACAAGCTGGAACT+CGG 0.530135 5_3:-18016830 Msa0803060:CDS
CTTGATGTTTCCTTGGTGAT+GGG 0.530241 5_3:-18015896 Msa0803060:three_prime_UTR
TCACCAAGGAAACATCAAGT+TGG 0.532484 5_3:+18015900 None:intergenic
TGTTTGCAGCTGGCCGTCAG+TGG 0.533443 5_3:+18017218 None:intergenic
CAAGAATTCTCCGAAATGGA+TGG 0.537798 5_3:-18020772 Msa0803060:exon
TTACACAAGGACAGGAACAT+TGG 0.540830 5_3:-18015777 Msa0803060:three_prime_UTR
TTGACCTTTCATACTGTCCA+AGG 0.543763 5_3:-18016232 Msa0803060:intron
AACAATTTGTCCATCAGGAG+GGG 0.543951 5_3:+18017002 None:intergenic
ATAAATCCATCATCTGTCTC+GGG 0.544485 5_3:+18016535 None:intergenic
GGACAATAATACTCAGCCCC+TGG 0.544550 5_3:-18016326 Msa0803060:CDS
TAACAATTTGTCCATCAGGA+GGG 0.546075 5_3:+18017001 None:intergenic
GGGTTCAACCACCCAAATAC+CGG 0.548137 5_3:-18020722 Msa0803060:CDS
AATGTTGAAAAGTGAAATTG+GGG 0.548561 5_3:+18020883 None:intergenic
GAGCAAGCTACCCCTCCTGA+TGG 0.552465 5_3:-18017012 Msa0803060:CDS
GCTACTACTGTCCATTGCAC+TGG 0.552846 5_3:+18016849 None:intergenic
GATAATTACTTGATTGGTGA+TGG 0.554314 5_3:-18016883 Msa0803060:CDS
TGCTCTGTTAGTTGATCCAG+GGG 0.555861 5_3:+18016310 None:intergenic
CTCAAATTCCAATGTCAACA+GGG 0.556788 5_3:-18016765 Msa0803060:CDS
CTACTGTCCATTGCACTGGA+TGG 0.557158 5_3:+18016853 None:intergenic
ATGGACAGAGTTCATCAGTA+GGG 0.560915 5_3:-18017350 Msa0803060:CDS
TTGAATGCCACTAGATGGAA+TGG 0.561211 5_3:-18015642 Msa0803060:three_prime_UTR
TTTGCAGATGCTGCAGCTTG+AGG 0.562895 5_3:+18016694 None:intergenic
AAACAGCAAAAGCAATGCTA+AGG 0.565264 5_3:-18016957 Msa0803060:CDS
CCAATGTCAACAGGGACTCA+AGG 0.569636 5_3:-18016757 Msa0803060:CDS
TTTCAAACAGGGTTTCAGGA+AGG 0.570624 5_3:-18017496 Msa0803060:intron
GGTAATGATCCAAGTGAACT+CGG 0.570835 5_3:+18016508 None:intergenic
TGAATTTGAAGGGAGAAAAG+GGG 0.576912 5_3:+18020908 None:intergenic
GATTTGGATTGTCTTTCACC+CGG 0.577390 5_3:-18016481 Msa0803060:CDS
GGCTTGAGGAAGAGGTTGAG+AGG 0.577943 5_3:-18017302 Msa0803060:CDS
GGCACAATCTCTGGTACTGA+AGG 0.579818 5_3:+18016598 None:intergenic
TTAACAATTTGTCCATCAGG+AGG 0.580490 5_3:+18017000 None:intergenic
CACCAATCAAGTAATTATCA+GGG 0.580602 5_3:+18016887 None:intergenic
AAATTGGGGATTGAATTTGA+AGG 0.584430 5_3:+18020897 None:intergenic
AGCATCTGCAAATGTTATGA+AGG 0.585668 5_3:-18016683 Msa0803060:CDS
TGTCGGCGCCGGTATTTGGG+TGG 0.587096 5_3:+18020714 None:intergenic
AGGTCCCTAGCGAATTCGGG+TGG 0.590111 5_3:+18020568 None:intergenic
TACTTCACCATCCAGTGCAA+TGG 0.590271 5_3:-18016860 Msa0803060:CDS
CATGGACAGAGTTCATCAGT+AGG 0.591063 5_3:-18017351 Msa0803060:CDS
ACAAACTGAGCAAAGAAACC+AGG 0.596219 5_3:+18017120 None:intergenic
GGACCCACCCGAATTCGCTA+GGG 0.598350 5_3:-18020572 Msa0803060:CDS
TGTTGAGTATGACCATGGGC+AGG 0.599305 5_3:+18017390 None:intergenic
CAACAGGCTCAGCAACCGCA+TGG 0.606577 5_3:-18017369 Msa0803060:CDS
AAAGAAACCAGGGCTTTGGA+CGG 0.607667 5_3:+18017131 None:intergenic
AGTCGGCAAATTTGGGCTTG+AGG 0.610170 5_3:-18017316 Msa0803060:CDS
CTAGGTACCATTCCATCTAG+TGG 0.611218 5_3:+18015635 None:intergenic
TTCTCATGCAAGAGCTTGTG+AGG 0.613430 5_3:-18017260 Msa0803060:CDS
ACAGTAGTAGCTCTACAAGC+TGG 0.613534 5_3:-18016837 Msa0803060:CDS
ATTACCTTGGACAGTATGAA+AGG 0.614492 5_3:+18016228 None:intergenic
GTAGGGGCATGTGTAGAAGT+CGG 0.619207 5_3:-18017333 Msa0803060:CDS
CAGCAGCAACAAACCACTGA+CGG 0.620232 5_3:-18017231 Msa0803060:CDS
TCCGAAATGGATGGAGCAAG+CGG 0.623140 5_3:-18020763 Msa0803060:exon
AAGCGTCGGCTCAAGCAGGA+TGG 0.626260 5_3:-18017051 Msa0803060:CDS
AAATCATCAATGTCTGCACC+GGG 0.630153 5_3:+18016463 None:intergenic
TTTGAGCAAAACTTATGACA+TGG 0.634177 5_3:-18020659 Msa0803060:CDS
GCAGCCAACAGAAAATGGCT+GGG 0.636582 5_3:-18016347 Msa0803060:CDS
TCTGCAAACTCCAATTCCAG+AGG 0.640517 5_3:-18016413 Msa0803060:CDS
GATCAACTAACAGAGCAGAT+GGG 0.641177 5_3:-18016304 Msa0803060:CDS
CTCGGGAGTAACTCTTCAAG+AGG 0.645660 5_3:-18016812 Msa0803060:CDS
TGACGGCCAGCTGCAAACAA+TGG 0.646370 5_3:-18017214 Msa0803060:CDS
CCTGTTGTTGAGTATGACCA+TGG 0.647258 5_3:+18017385 None:intergenic
ACATTGACGAAATATCCAGA+GGG 0.654829 5_3:-18016378 Msa0803060:CDS
TGGACAGAGTTCATCAGTAG+GGG 0.659673 5_3:-18017349 Msa0803060:CDS
GGGGTGAAATAAGTATCACT+AGG 0.661293 5_3:+18015617 None:intergenic
ACCAAGGAAACATCAAGTTG+GGG 0.663101 5_3:+18015902 None:intergenic
AGTCGAAGAAAACCTGCCCA+TGG 0.665848 5_3:-18017402 Msa0803060:CDS
CAAACTGAGCAAAGAAACCA+GGG 0.668272 5_3:+18017121 None:intergenic
GGTCCCTAGCGAATTCGGGT+GGG 0.673393 5_3:+18020569 None:intergenic
CTGTTGTTGAGTATGACCAT+GGG 0.673452 5_3:+18017386 None:intergenic
TTGCTTTGAAGATTTACACA+AGG 0.678914 5_3:-18015790 Msa0803060:three_prime_UTR
GAAATGGATGGAGCAAGCGG+CGG 0.687946 5_3:-18020760 Msa0803060:CDS
AACATTGACGAAATATCCAG+AGG 0.690077 5_3:-18016379 Msa0803060:CDS
GAGCAAAACTTATGACATGG+TGG 0.697463 5_3:-18020656 Msa0803060:CDS
GTAGACTGCACTGAAGATGG+AGG 0.697646 5_3:+18016787 None:intergenic
ACTGATGAACTCTGTCCATG+CGG 0.724135 5_3:+18017354 None:intergenic
TTATTGAAAGATTCTACACG+CGG 0.735179 5_3:+18016913 None:intergenic
AGTGTCTGACAAGTGCACGT+TGG 0.739192 5_3:-18015816 Msa0803060:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATTATAGTATGTA+AGG - chr5_3:18017055-18017074 Msa0803060:CDS 10.0%
!! TTACAAAAATTGAAAAATAT+AGG + chr5_3:18017263-18017282 None:intergenic 10.0%
!! TTGAAAAATTAAATCAAATT+TGG - chr5_3:18020978-18020997 Msa0803060:five_prime_UTR 10.0%
!! TGAAAAATTAAATCAAATTT+GGG - chr5_3:18020979-18020998 Msa0803060:five_prime_UTR 10.0%
!!! TTTCTTTTCACTTTTTTTTA+GGG + chr5_3:18015562-18015581 None:intergenic 15.0%
!!! TTTTCTTTTCACTTTTTTTT+AGG + chr5_3:18015563-18015582 None:intergenic 15.0%
!! TAAAAAAAAGTGAAAAGAAA+AGG - chr5_3:18015562-18015581 Msa0803060:three_prime_UTR 15.0%
!! AAAAAAAAGTGAAAAGAAAA+GGG - chr5_3:18015563-18015582 Msa0803060:three_prime_UTR 15.0%
!!! TCACAATCATTTTTTTTTTT+GGG - chr5_3:18016573-18016592 Msa0803060:CDS 15.0%
!!! AGTATTTTTCTTATAATTAG+AGG - chr5_3:18017556-18017575 Msa0803060:intron 15.0%
!!! AGTATTTTTCTTATAATTTG+AGG - chr5_3:18018199-18018218 Msa0803060:intron 15.0%
!!! TTTTCAAAAACAAAAATAGT+GGG + chr5_3:18020965-18020984 None:intergenic 15.0%
!!! TTTTTCAAAAACAAAAATAG+TGG + chr5_3:18020966-18020985 None:intergenic 15.0%
!!! ATTTAATTGATTTTGTGTGT+GGG + chr5_3:18015616-18015635 None:intergenic 20.0%
!! AAATGTTGAAAAGTGAAATT+GGG + chr5_3:18015679-18015698 None:intergenic 20.0%
!! TAAATGTTGAAAAGTGAAAT+TGG + chr5_3:18015680-18015699 None:intergenic 20.0%
!!! TTGAGAAATTTTTTGATCAA+GGG + chr5_3:18015756-18015775 None:intergenic 20.0%
!!! ATTTTGTTTGATTTGAGTTT+TGG - chr5_3:18016117-18016136 Msa0803060:intron 20.0%
!!! AAAGTGTTTAATTTACTTTG+TGG - chr5_3:18016211-18016230 Msa0803060:intron 20.0%
!!! AAGTGTTTAATTTACTTTGT+GGG - chr5_3:18016212-18016231 Msa0803060:intron 20.0%
!!! TTGATGTTTTTGTTAATTTG+TGG - chr5_3:18016252-18016271 Msa0803060:three_prime_UTR 20.0%
!!! TGATGTTTTTGTTAATTTGT+GGG - chr5_3:18016253-18016272 Msa0803060:three_prime_UTR 20.0%
!! AAAAAAATGATTGTGAGAAT+GGG + chr5_3:18016569-18016588 None:intergenic 20.0%
!! AAAAAAAATGATTGTGAGAA+TGG + chr5_3:18016570-18016589 None:intergenic 20.0%
!!! CTCACAATCATTTTTTTTTT+TGG - chr5_3:18016572-18016591 Msa0803060:CDS 20.0%
!!! CACAATCATTTTTTTTTTTG+GGG - chr5_3:18016574-18016593 Msa0803060:CDS 20.0%
!!! ATCTCTTTCATTTTAATTGA+AGG + chr5_3:18016831-18016850 None:intergenic 20.0%
!! TCAATTAAAATGAAAGAGAT+AGG - chr5_3:18016831-18016850 Msa0803060:CDS 20.0%
!! CAATTAAAATGAAAGAGATA+GGG - chr5_3:18016832-18016851 Msa0803060:CDS 20.0%
!! CATTGTATATTCAATATCAA+AGG - chr5_3:18017030-18017049 Msa0803060:CDS 20.0%
!!! ATTATTATGAAGAGGATTTT+AGG - chr5_3:18017092-18017111 Msa0803060:CDS 20.0%
!!! TTATTATGAAGAGGATTTTA+GGG - chr5_3:18017093-18017112 Msa0803060:CDS 20.0%
!!! TTTTGTAAGACAAATGATAA+AGG - chr5_3:18017275-18017294 Msa0803060:CDS 20.0%
!!! TAATTAGTATGTTTTTATGC+AGG - chr5_3:18017592-18017611 Msa0803060:intron 20.0%
!!! CTTATTATCCTCTAAAAAAA+GGG + chr5_3:18017638-18017657 None:intergenic 20.0%
!!! ACTTATTATCCTCTAAAAAA+AGG + chr5_3:18017639-18017658 None:intergenic 20.0%
!! TTATGGAAAATAAACTTTCT+TGG - chr5_3:18017805-18017824 Msa0803060:intron 20.0%
!!! AAAACTTTAGCTTTTTGTTA+TGG - chr5_3:18018560-18018579 Msa0803060:intron 20.0%
!! TTATGGAAAATAAACTTTCT+TGG - chr5_3:18017805-18017824 Msa0803060:intron 20.0%
!!! ATTTTATAGGAAAAATAGTC+AGG + chr5_3:18019043-18019062 None:intergenic 20.0%
!! TTTCCTATAAAATTTCAAAC+AGG - chr5_3:18019050-18019069 Msa0803060:intron 20.0%
!! TTCCTATAAAATTTCAAACA+GGG - chr5_3:18019051-18019070 Msa0803060:intron 20.0%
!!! ATTTGTTAAGCAATTCTATT+TGG - chr5_3:18020114-18020133 Msa0803060:intron 20.0%
!! TTTGTTAAGCAATTCTATTT+GGG - chr5_3:18020115-18020134 Msa0803060:intron 20.0%
!!! CATAGATGATTAAATTCTTT+TGG + chr5_3:18020297-18020316 None:intergenic 20.0%
!!! AAAACAAGTTATGAACTTTT+TGG - chr5_3:18020523-18020542 Msa0803060:CDS 20.0%
!! TTTCAAAAACAAAAATAGTG+GGG + chr5_3:18020964-18020983 None:intergenic 20.0%
!!! TTTAATTGATTTTGTGTGTG+GGG + chr5_3:18015615-18015634 None:intergenic 25.0%
!!! GATTTAATTGATTTTGTGTG+TGG + chr5_3:18015617-18015636 None:intergenic 25.0%
! AATGTTGAAAAGTGAAATTG+GGG + chr5_3:18015678-18015697 None:intergenic 25.0%
!! AAACTCAAAATCACACTTTT+AGG - chr5_3:18015710-18015729 Msa0803060:three_prime_UTR 25.0%
!! AACTCAAAATCACACTTTTA+GGG - chr5_3:18015711-18015730 Msa0803060:three_prime_UTR 25.0%
!!! GTTGAGAAATTTTTTGATCA+AGG + chr5_3:18015757-18015776 None:intergenic 25.0%
!! TCATAAGTTTTGCTCAAAAA+CGG + chr5_3:18015897-18015916 None:intergenic 25.0%
!! AGTGTTTAATTTACTTTGTG+GGG - chr5_3:18016213-18016232 Msa0803060:intron 25.0%
! TTTGATCTATGATTATACTG+TGG - chr5_3:18016280-18016299 Msa0803060:CDS 25.0%
!! GATTTTTGAACTGTTTGTTT+TGG - chr5_3:18016339-18016358 Msa0803060:CDS 25.0%
!!! TGTTTTGGTGAAATATAATG+AGG - chr5_3:18016354-18016373 Msa0803060:CDS 25.0%
! ATGACACTAAATGATAAAGA+GGG + chr5_3:18016617-18016636 None:intergenic 25.0%
! AGTAAATTTCCTTACTTTCA+CGG + chr5_3:18016804-18016823 None:intergenic 25.0%
! GTTAATCAGTTACTTGATTA+TGG - chr5_3:18016993-18017012 Msa0803060:CDS 25.0%
! GATATTGAATATACAATGCA+TGG + chr5_3:18017028-18017047 None:intergenic 25.0%
! AATGTAGTTTATGATACGAT+AGG - chr5_3:18017376-18017395 Msa0803060:CDS 25.0%
! GTAGATTAACAAAATCAACT+GGG + chr5_3:18017690-18017709 None:intergenic 25.0%
! AGTAGATTAACAAAATCAAC+TGG + chr5_3:18017691-18017710 None:intergenic 25.0%
!!! ACAACTTTAGCTTTTAGTTA+TGG - chr5_3:18017788-18017807 Msa0803060:intron 25.0%
! GTTAAGGTTCAAAAGATAAA+TGG + chr5_3:18017897-18017916 None:intergenic 25.0%
! GTTTATTGTCAACTTAGTTA+AGG + chr5_3:18017913-18017932 None:intergenic 25.0%
! TAAAATATCAGCACTCAATT+TGG - chr5_3:18018010-18018029 Msa0803060:intron 25.0%
! CAGTTAATTATAACCCATAA+AGG + chr5_3:18018055-18018074 None:intergenic 25.0%
!!! TCCTTTTTTAAGAGGATAAT+AGG - chr5_3:18018303-18018322 Msa0803060:intron 25.0%
! TCCTATTATCCTCTTAAAAA+AGG + chr5_3:18018307-18018326 None:intergenic 25.0%
! ATTGATTGTATCAAAACACT+AGG - chr5_3:18018365-18018384 Msa0803060:intron 25.0%
! GTTAAGGTTCAAAAGATAAA+TGG + chr5_3:18017897-18017916 None:intergenic 25.0%
! CTTTATTGTCAACTTAGTTA+AGG + chr5_3:18018684-18018703 None:intergenic 25.0%
! TAAAATATCAGCACTCAATT+TGG - chr5_3:18018010-18018029 Msa0803060:intron 25.0%
!! ATGTTTTATCAAACCCATAA+AGG + chr5_3:18018826-18018845 None:intergenic 25.0%
! AAAAAGAGAGAAGACAATTA+AGG + chr5_3:18018942-18018961 None:intergenic 25.0%
!!! TCGAAAGTTGTGTTTTTTTA+TGG - chr5_3:18019001-18019020 Msa0803060:intron 25.0%
!!! AACCCTGTTTGAAATTTTAT+AGG + chr5_3:18019056-18019075 None:intergenic 25.0%
! TATTTAACAATTTGTCCATC+AGG + chr5_3:18019564-18019583 None:intergenic 25.0%
!! GGTATATCAAGAATACTTTT+AGG + chr5_3:18019984-18020003 None:intergenic 25.0%
! TATACCTGAAGACAATTATA+TGG - chr5_3:18019998-18020017 Msa0803060:intron 25.0%
!!! TCATCACTTGTGTATTTTTT+GGG + chr5_3:18020362-18020381 None:intergenic 25.0%
!!! ATCATCACTTGTGTATTTTT+TGG + chr5_3:18020363-18020382 None:intergenic 25.0%
!! AGTCTAATTTTCTTTTTCTG+TGG - chr5_3:18020472-18020491 Msa0803060:intron 25.0%
! AAGAATGAGATAAAAGAGAA+TGG - chr5_3:18020891-18020910 Msa0803060:five_prime_UTR 25.0%
! TTCAAAAACAAAAATAGTGG+GGG + chr5_3:18020963-18020982 None:intergenic 25.0%
TTGAATTTGAAGGGAGAAAA+GGG + chr5_3:18015654-18015673 None:intergenic 30.0%
ATTGAATTTGAAGGGAGAAA+AGG + chr5_3:18015655-18015674 None:intergenic 30.0%
AATTGGGGATTGAATTTGAA+GGG + chr5_3:18015663-18015682 None:intergenic 30.0%
AAATTGGGGATTGAATTTGA+AGG + chr5_3:18015664-18015683 None:intergenic 30.0%
AAAACAAGAATTCTCCGAAA+TGG - chr5_3:18015782-18015801 Msa0803060:three_prime_UTR 30.0%
TTTGAGCAAAACTTATGACA+TGG - chr5_3:18015899-18015918 Msa0803060:three_prime_UTR 30.0%
TTGTTATGCTTGAAGAACTT+CGG + chr5_3:18016020-18016039 None:intergenic 30.0%
! CTTCTTTCTCACTCTTTTAA+CGG - chr5_3:18016087-18016106 Msa0803060:intron 30.0%
! TTATACTGTGGATGTTGATT+TGG - chr5_3:18016292-18016311 Msa0803060:CDS 30.0%
!! TGGATGTTGATTTGGTTTAA+TGG - chr5_3:18016300-18016319 Msa0803060:CDS 30.0%
!! GGATGTTGATTTGGTTTAAT+GGG - chr5_3:18016301-18016320 Msa0803060:CDS 30.0%
CATGACACTAAATGATAAAG+AGG + chr5_3:18016618-18016637 None:intergenic 30.0%
CTCTTTATCATTTAGTGTCA+TGG - chr5_3:18016616-18016635 Msa0803060:CDS 30.0%
TGATCTGAATTGTGGTTATA+AGG - chr5_3:18016691-18016710 Msa0803060:CDS 30.0%
GATCTGAATTGTGGTTATAA+GGG - chr5_3:18016692-18016711 Msa0803060:CDS 30.0%
ATCTGAATTGTGGTTATAAG+GGG - chr5_3:18016693-18016712 Msa0803060:CDS 30.0%
TTAAAATGAAAGAGATAGGG+TGG - chr5_3:18016835-18016854 Msa0803060:CDS 30.0%
TAAAATGAAAGAGATAGGGT+GGG - chr5_3:18016836-18016855 Msa0803060:CDS 30.0%
GTTTCCTTCTTTCAAAAGAA+TGG - chr5_3:18016872-18016891 Msa0803060:CDS 30.0%
!! CTATCCATTCTTTTGAAAGA+AGG + chr5_3:18016879-18016898 None:intergenic 30.0%
CGTAGTGAATTATTATGAAG+AGG - chr5_3:18017084-18017103 Msa0803060:CDS 30.0%
!! AGAATTATTTGCTATGAAGC+TGG - chr5_3:18017123-18017142 Msa0803060:CDS 30.0%
! AACATGTCACTTACATTACA+GGG + chr5_3:18017155-18017174 None:intergenic 30.0%
! AAACATGTCACTTACATTAC+AGG + chr5_3:18017156-18017175 None:intergenic 30.0%
! AAGTACTGCTATCAGTATAA+TGG - chr5_3:18017226-18017245 Msa0803060:CDS 30.0%
ATACCAGTATGTATTCAACT+TGG - chr5_3:18017333-18017352 Msa0803060:CDS 30.0%
GGATGTGTATATAACAACAT+AGG - chr5_3:18017397-18017416 Msa0803060:CDS 30.0%
GCTTTATAGTTAACTGCTTT+AGG - chr5_3:18017427-18017446 Msa0803060:CDS 30.0%
TTATGAACTTTGCAATGATG+TGG - chr5_3:18017456-18017475 Msa0803060:CDS 30.0%
GCTTAAAAGTAAGAATGCAA+TGG + chr5_3:18017535-18017554 None:intergenic 30.0%
AATTAAGCTAGGTGTATCAA+TGG + chr5_3:18017849-18017868 None:intergenic 30.0%
! TTTGTGGACATAAGACTTTT+GGG - chr5_3:18017969-18017988 Msa0803060:intron 30.0%
GCTTAAAAGTAAGAATGCAA+CGG + chr5_3:18017535-18017554 None:intergenic 30.0%
ATAAATTCACAGCAAGTAAG+TGG + chr5_3:18018341-18018360 None:intergenic 30.0%
TGCCAATAACAAAATCAACT+GGG + chr5_3:18018428-18018447 None:intergenic 30.0%
ATGCCAATAACAAAATCAAC+TGG + chr5_3:18018429-18018448 None:intergenic 30.0%
!! TTTGTTATTGGCATTCGTTA+AGG - chr5_3:18018435-18018454 Msa0803060:intron 30.0%
CAATAAGCTATGTGTATCAA+TGG + chr5_3:18018621-18018640 None:intergenic 30.0%
AGTTGACAATAAAGAGATAG+TGG - chr5_3:18018690-18018709 Msa0803060:intron 30.0%
! TTTCTGGACATAAGACTTTT+GGG - chr5_3:18018740-18018759 Msa0803060:intron 30.0%
TAGTATTACACACTCAATTC+TGG + chr5_3:18018882-18018901 None:intergenic 30.0%
ATTAAGGATGTGCAACAATA+TGG + chr5_3:18018926-18018945 None:intergenic 30.0%
TATAGGAAAAATAGTCAGGA+AGG + chr5_3:18019039-18019058 None:intergenic 30.0%
AAAATTTCAAACAGGGTTTC+AGG - chr5_3:18019058-18019077 Msa0803060:intron 30.0%
AACAACAAAATGACAGCAAT+AGG - chr5_3:18019463-18019482 Msa0803060:intron 30.0%
!! TTTGCTGTTTCATTCATCAT+AGG + chr5_3:18019591-18019610 None:intergenic 30.0%
TTATTGAAAGATTCTACACG+CGG + chr5_3:18019648-18019667 None:intergenic 30.0%
AACCCTGATAATTACTTGAT+TGG - chr5_3:18019669-18019688 Msa0803060:intron 30.0%
CACCAATCAAGTAATTATCA+GGG + chr5_3:18019674-18019693 None:intergenic 30.0%
TCACCAATCAAGTAATTATC+AGG + chr5_3:18019675-18019694 None:intergenic 30.0%
GATAATTACTTGATTGGTGA+TGG - chr5_3:18019675-18019694 Msa0803060:intron 30.0%
GAAAGACAATCCAAATCAAT+GGG + chr5_3:18020074-18020093 None:intergenic 30.0%
TGAAAGACAATCCAAATCAA+TGG + chr5_3:18020075-18020094 None:intergenic 30.0%
TAACTAATGAACACTCAACA+AGG + chr5_3:18020563-18020582 None:intergenic 30.0%
ATCTGTTCTTCCAATGTTAT+AGG - chr5_3:18020587-18020606 Msa0803060:CDS 30.0%
CCAAAGATTTCCTATAACAT+TGG + chr5_3:18020600-18020619 None:intergenic 30.0%
CCAATGTTATAGGAAATCTT+TGG - chr5_3:18020597-18020616 Msa0803060:CDS 30.0%
!! TTGCTTTGAAGATTTACACA+AGG - chr5_3:18020768-18020787 Msa0803060:exon 30.0%
!! CTTCTTATGTAACTGATTTG+TGG - chr5_3:18020851-18020870 Msa0803060:five_prime_UTR 30.0%
! AAATTTGGGAGAGTATGAAA+TGG - chr5_3:18020993-18021012 Msa0803060:five_prime_UTR 30.0%
TGAATTTGAAGGGAGAAAAG+GGG + chr5_3:18015653-18015672 None:intergenic 35.0%
! TAAGTTTTGCTCAAAAACGG+TGG + chr5_3:18015894-18015913 None:intergenic 35.0%
CAACAACAGTTTCGTTGTTT+GGG - chr5_3:18015965-18015984 Msa0803060:intron 35.0%
TGGTGAAATATAATGAGGAG+TGG - chr5_3:18016359-18016378 Msa0803060:CDS 35.0%
TATAATGAGGAGTGGAAAGA+TGG - chr5_3:18016367-18016386 Msa0803060:CDS 35.0%
! ATGGTTTTCTTCGAGTGAAA+TGG - chr5_3:18016635-18016654 Msa0803060:CDS 35.0%
TAGTGATGTGATCTGAATTG+TGG - chr5_3:18016683-18016702 Msa0803060:CDS 35.0%
TCTGAATTGTGGTTATAAGG+GGG - chr5_3:18016694-18016713 Msa0803060:CDS 35.0%
!! TGATTTGGTGTGGTTGAATT+AGG - chr5_3:18016744-18016763 Msa0803060:CDS 35.0%
TGACAAAGAAAGCTATTCTC+AGG - chr5_3:18016971-18016990 Msa0803060:CDS 35.0%
!! ATTTGCTATGAAGCTGGTAT+TGG - chr5_3:18017129-18017148 Msa0803060:CDS 35.0%
! TCACCAAGTTGAATACATAC+TGG + chr5_3:18017339-18017358 None:intergenic 35.0%
CAGCTCATATCAATTAAGCT+AGG + chr5_3:18017860-18017879 None:intergenic 35.0%
! GTTTGTGGACATAAGACTTT+TGG - chr5_3:18017968-18017987 Msa0803060:intron 35.0%
!!! TGAGTGCTGATATTTTACTC+AGG + chr5_3:18018007-18018026 None:intergenic 35.0%
ATATCAGCACTCAATTTGGT+TGG - chr5_3:18018014-18018033 Msa0803060:intron 35.0%
TATCAGCACTCAATTTGGTT+GGG - chr5_3:18018015-18018034 Msa0803060:intron 35.0%
TGACTGGTATACATCCTTTA+TGG - chr5_3:18018038-18018057 Msa0803060:intron 35.0%
GACTGGTATACATCCTTTAT+GGG - chr5_3:18018039-18018058 Msa0803060:intron 35.0%
AACTGATCAGTTACTGCTTT+AGG - chr5_3:18018070-18018089 Msa0803060:intron 35.0%
GTATGTACTTTGCAATGATG+TGG - chr5_3:18018099-18018118 Msa0803060:intron 35.0%
!! GCATGTTTTTATGTAGCATG+AGG - chr5_3:18018152-18018171 Msa0803060:intron 35.0%
ATTCAATACGCCAAAATGGT+GGG - chr5_3:18018232-18018251 Msa0803060:intron 35.0%
!! AGCCCAGTTGATTTTGTTAT+TGG - chr5_3:18018423-18018442 Msa0803060:intron 35.0%
TGTTCAGGAAACTAGTAGAT+TGG + chr5_3:18018464-18018483 None:intergenic 35.0%
ACTTTCTTGGATTCAACTTC+TGG - chr5_3:18017818-18017837 Msa0803060:intron 35.0%
!! GTTTCTGGACATAAGACTTT+TGG - chr5_3:18018739-18018758 Msa0803060:intron 35.0%
!!! TGAGTGCTGATATTTTACTC+AGG + chr5_3:18018007-18018026 None:intergenic 35.0%
ATATCAGCACTCAATTTGGT+TGG - chr5_3:18018014-18018033 Msa0803060:intron 35.0%
TATCAGCACTCAATTTGGTT+GGG - chr5_3:18018015-18018034 Msa0803060:intron 35.0%
TGACTGGTATACATCCTTTA+TGG - chr5_3:18018038-18018057 Msa0803060:intron 35.0%
GACTGGTATACATCCTTTAT+GGG - chr5_3:18018039-18018058 Msa0803060:intron 35.0%
ATGTGCAACAATATGGCTAA+AGG + chr5_3:18018919-18018938 None:intergenic 35.0%
TAACAATTTGTCCATCAGGA+GGG + chr5_3:18019560-18019579 None:intergenic 35.0%
TTAACAATTTGTCCATCAGG+AGG + chr5_3:18019561-18019580 None:intergenic 35.0%
AAACAGCAAAAGCAATGCTA+AGG - chr5_3:18019601-18019620 Msa0803060:intron 35.0%
TGCTAAGGAAGATCATGAAA+TGG - chr5_3:18019616-18019635 Msa0803060:intron 35.0%
GCTAAGGAAGATCATGAAAT+GGG - chr5_3:18019617-18019636 Msa0803060:intron 35.0%
ACTCAAATTCCAATGTCAAC+AGG - chr5_3:18019792-18019811 Msa0803060:intron 35.0%
CTCAAATTCCAATGTCAACA+GGG - chr5_3:18019793-18019812 Msa0803060:intron 35.0%
!!! ATTTCAGGTTTTTCTGCTGA+GGG + chr5_3:18019834-18019853 None:intergenic 35.0%
!!! AATTTCAGGTTTTTCTGCTG+AGG + chr5_3:18019835-18019854 None:intergenic 35.0%
TGAGGTACAGATAGAATTTC+AGG + chr5_3:18019849-18019868 None:intergenic 35.0%
AGCATCTGCAAATGTTATGA+AGG - chr5_3:18019875-18019894 Msa0803060:intron 35.0%
TCTGCAAATGTTATGAAGGA+TGG - chr5_3:18019879-18019898 Msa0803060:intron 35.0%
ATAACATCTGCTTGAGAAGT+CGG + chr5_3:18019927-18019946 None:intergenic 35.0%
! ATACTTTTAGGCACAATCTC+TGG + chr5_3:18019972-18019991 None:intergenic 35.0%
ATAAATCCATCATCTGTCTC+GGG + chr5_3:18020026-18020045 None:intergenic 35.0%
CATAAATCCATCATCTGTCT+CGG + chr5_3:18020027-18020046 None:intergenic 35.0%
! TGGATCATTACCCATTGATT+TGG - chr5_3:18020061-18020080 Msa0803060:intron 35.0%
TCTGGATATTTCGTCAATGT+TGG + chr5_3:18020180-18020199 None:intergenic 35.0%
AACATTGACGAAATATCCAG+AGG - chr5_3:18020179-18020198 Msa0803060:intron 35.0%
ACATTGACGAAATATCCAGA+GGG - chr5_3:18020180-18020199 Msa0803060:intron 35.0%
ATTACCTTGGACAGTATGAA+AGG + chr5_3:18020333-18020352 None:intergenic 35.0%
!!! CTTGTGTATTTTTTGGGTCA+GGG + chr5_3:18020356-18020375 None:intergenic 35.0%
!!! ACTTGTGTATTTTTTGGGTC+AGG + chr5_3:18020357-18020376 None:intergenic 35.0%
ATACCAAACGAAAAGCTTCT+TGG + chr5_3:18020418-18020437 None:intergenic 35.0%
TAACATTGGAAGAACAGATC+AGG + chr5_3:18020586-18020605 None:intergenic 35.0%
TTTGGGTGATCATACACTTT+GGG + chr5_3:18020723-18020742 None:intergenic 35.0%
TTGAAGATTTACACAAGGAC+AGG - chr5_3:18020773-18020792 Msa0803060:exon 35.0%
ACATTACTCTGTTTAGTTGC+TGG - chr5_3:18020822-18020841 Msa0803060:five_prime_UTR 35.0%
! CTGATTTGTGGTGTTTCAAT+TGG - chr5_3:18020863-18020882 Msa0803060:five_prime_UTR 35.0%
!! ATTGATTTTGTGTGTGGGGT+GGG + chr5_3:18015611-18015630 None:intergenic 40.0%
!! AATTGATTTTGTGTGTGGGG+TGG + chr5_3:18015612-18015631 None:intergenic 40.0%
CAAGAATTCTCCGAAATGGA+TGG - chr5_3:18015786-18015805 Msa0803060:three_prime_UTR 40.0%
GAGCAAAACTTATGACATGG+TGG - chr5_3:18015902-18015921 Msa0803060:three_prime_UTR 40.0%
GAAACTATCGCATCTGTTGA+AGG + chr5_3:18015933-18015952 None:intergenic 40.0%
CAACAGATGCGATAGTTTCA+TGG - chr5_3:18015934-18015953 Msa0803060:three_prime_UTR 40.0%
CCAAACAACGAAACTGTTGT+TGG + chr5_3:18015967-18015986 None:intergenic 40.0%
CCAACAACAGTTTCGTTGTT+TGG - chr5_3:18015964-18015983 Msa0803060:intron 40.0%
TTCTTCGAGTGAAATGGTGA+CGG - chr5_3:18016641-18016660 Msa0803060:CDS 40.0%
TTACTTTCACGGTTCAGTTG+AGG + chr5_3:18016793-18016812 None:intergenic 40.0%
TCAACTGAACCGTGAAAGTA+AGG - chr5_3:18016792-18016811 Msa0803060:CDS 40.0%
AGAGATAGGGTGGGAATTAT+TGG - chr5_3:18016845-18016864 Msa0803060:CDS 40.0%
TAGTTGCTGACAATGTAGGA+GGG + chr5_3:18016929-18016948 None:intergenic 40.0%
CATCTAGTTGCTGACAATGT+AGG + chr5_3:18016933-18016952 None:intergenic 40.0%
CTACATTGTCAGCAACTAGA+TGG - chr5_3:18016931-18016950 Msa0803060:CDS 40.0%
TGCAATGATGTGGAACTGAT+CGG - chr5_3:18017466-18017485 Msa0803060:CDS 40.0%
GCATGTTCTTATGTAGCATG+AGG - chr5_3:18017509-18017528 Msa0803060:intron 40.0%
ACTAATTTCCTGAACACGCT+TGG - chr5_3:18017708-18017727 Msa0803060:intron 40.0%
CTAATTTCCTGAACACGCTT+GGG - chr5_3:18017709-18017728 Msa0803060:intron 40.0%
GTTAAACTGATCTGCAGAGA+AGG + chr5_3:18017768-18017787 None:intergenic 40.0%
! GTGTTGCTCAATTTATCCTC+AGG - chr5_3:18017941-18017960 Msa0803060:intron 40.0%
!! TGGACATAAGACTTTTGGGA+TGG - chr5_3:18017973-18017992 Msa0803060:intron 40.0%
!! CAGTTACTGCTTTAGGAAGA+TGG - chr5_3:18018077-18018096 Msa0803060:intron 40.0%
CTGCATTCAATACGCCAAAA+TGG - chr5_3:18018228-18018247 Msa0803060:intron 40.0%
CATTCAATACGCCAAAATGG+TGG - chr5_3:18018231-18018250 Msa0803060:intron 40.0%
! AATCAACTGGGCTTTTCACA+AGG + chr5_3:18018416-18018435 None:intergenic 40.0%
! ACTAGTTTCCTGAACACTCT+TGG - chr5_3:18018468-18018487 Msa0803060:intron 40.0%
CTAGTTTCCTGAACACTCTT+GGG - chr5_3:18018469-18018488 Msa0803060:intron 40.0%
GTTAAACTGATCTGCAGAGA+AGG + chr5_3:18017768-18017787 None:intergenic 40.0%
! GTGTTGCTCAATTTATCCTC+AGG - chr5_3:18017941-18017960 Msa0803060:intron 40.0%
!! TGGACATAAGACTTTTGGGA+TGG - chr5_3:18017973-18017992 Msa0803060:intron 40.0%
AATTCTTCCCTCTTCAAACC+TGG - chr5_3:18018856-18018875 Msa0803060:intron 40.0%
TTTCAAACAGGGTTTCAGGA+AGG - chr5_3:18019062-18019081 Msa0803060:intron 40.0%
TTGCAAATTCCCAACGATCT+GGG + chr5_3:18019092-18019111 None:intergenic 40.0%
TTTGCAAATTCCCAACGATC+TGG + chr5_3:18019093-18019112 None:intergenic 40.0%
TCGTTGGGAATTTGCAAATG+AGG - chr5_3:18019095-18019114 Msa0803060:intron 40.0%
CGTTGGGAATTTGCAAATGA+GGG - chr5_3:18019096-18019115 Msa0803060:intron 40.0%
! TTGCAAATGAGGGCTTTTTG+AGG - chr5_3:18019106-18019125 Msa0803060:intron 40.0%
! TGCAAATGAGGGCTTTTTGA+GGG - chr5_3:18019107-18019126 Msa0803060:intron 40.0%
CTGTTGTTGAGTATGACCAT+GGG + chr5_3:18019175-18019194 None:intergenic 40.0%
ATGGACAGAGTTCATCAGTA+GGG - chr5_3:18019208-18019227 Msa0803060:intron 40.0%
TGTGTAGAAGTCGGCAAATT+TGG - chr5_3:18019234-18019253 Msa0803060:intron 40.0%
GTGTAGAAGTCGGCAAATTT+GGG - chr5_3:18019235-18019254 Msa0803060:intron 40.0%
CAAACTGAGCAAAGAAACCA+GGG + chr5_3:18019440-18019459 None:intergenic 40.0%
ACAAACTGAGCAAAGAAACC+AGG + chr5_3:18019441-18019460 None:intergenic 40.0%
! CTGAAGTCAACAAAAAGCGT+CGG - chr5_3:18019493-18019512 Msa0803060:intron 40.0%
AACAATTTGTCCATCAGGAG+GGG + chr5_3:18019559-18019578 None:intergenic 40.0%
!!! TTTCAGGTTTTTCTGCTGAG+GGG + chr5_3:18019833-18019852 None:intergenic 40.0%
TAACATCTGCTTGAGAAGTC+GGG + chr5_3:18019926-18019945 None:intergenic 40.0%
! TCTGGTACTGAAGGTATATC+AGG + chr5_3:18019954-18019973 None:intergenic 40.0%
GGAGCCATATAATTGTCTTC+AGG + chr5_3:18020005-18020024 None:intergenic 40.0%
!! CGAGACAGATGATGGATTTA+TGG - chr5_3:18020025-18020044 Msa0803060:intron 40.0%
TTTATGGATCCGAGTTCACT+TGG - chr5_3:18020041-18020060 Msa0803060:intron 40.0%
GGTAATGATCCAAGTGAACT+CGG + chr5_3:18020053-18020072 None:intergenic 40.0%
GATTTGGATTGTCTTTCACC+CGG - chr5_3:18020077-18020096 Msa0803060:intron 40.0%
AAATCATCAATGTCTGCACC+GGG + chr5_3:18020098-18020117 None:intergenic 40.0%
CAAATCATCAATGTCTGCAC+CGG + chr5_3:18020099-18020118 None:intergenic 40.0%
! TCCAATTCCAGAGGATTTTG+AGG - chr5_3:18020154-18020173 Msa0803060:intron 40.0%
GATCAACTAACAGAGCAGAT+GGG - chr5_3:18020254-18020273 Msa0803060:intron 40.0%
TTGACCTTTCATACTGTCCA+AGG - chr5_3:18020326-18020345 Msa0803060:intron 40.0%
AAAGCTTCTTGGTGAGCAAA+TGG + chr5_3:18020407-18020426 None:intergenic 40.0%
! TCACCAAGAAGCTTTTCGTT+TGG - chr5_3:18020412-18020431 Msa0803060:intron 40.0%
! ACCAAGGAAACATCAAGTTG+GGG + chr5_3:18020659-18020678 None:intergenic 40.0%
CACCAAGGAAACATCAAGTT+GGG + chr5_3:18020660-18020679 None:intergenic 40.0%
TCACCAAGGAAACATCAAGT+TGG + chr5_3:18020661-18020680 None:intergenic 40.0%
ACTTGATGTTTCCTTGGTGA+TGG - chr5_3:18020661-18020680 Msa0803060:CDS 40.0%
! CTTGATGTTTCCTTGGTGAT+GGG - chr5_3:18020662-18020681 Msa0803060:CDS 40.0%
!! TTCCTTGGTGATGGGAAAAA+TGG - chr5_3:18020670-18020689 Msa0803060:CDS 40.0%
!! TCCTTGGTGATGGGAAAAAT+GGG - chr5_3:18020671-18020690 Msa0803060:CDS 40.0%
CTTTGGGTGATCATACACTT+TGG + chr5_3:18020724-18020743 None:intergenic 40.0%
TTACACAAGGACAGGAACAT+TGG - chr5_3:18020781-18020800 Msa0803060:five_prime_UTR 40.0%
TGGAATTGAATGCCACTAGA+TGG - chr5_3:18020911-18020930 Msa0803060:five_prime_UTR 40.0%
TTGAATGCCACTAGATGGAA+TGG - chr5_3:18020916-18020935 Msa0803060:five_prime_UTR 40.0%
GGGGTGAAATAAGTATCACT+AGG + chr5_3:18020944-18020963 None:intergenic 40.0%
! TTGATTTTGTGTGTGGGGTG+GGG + chr5_3:18015610-18015629 None:intergenic 45.0%
GAAAAGGGGACAGGAGATTA+TGG + chr5_3:18015639-18015658 None:intergenic 45.0%
! GTTTTGCTCAAAAACGGTGG+CGG + chr5_3:18015891-18015910 None:intergenic 45.0%
AAAAGGTCCCTAGCGAATTC+GGG + chr5_3:18015996-18016015 None:intergenic 45.0%
CAAAAGGTCCCTAGCGAATT+CGG + chr5_3:18015997-18016016 None:intergenic 45.0%
GCTTGAAGAACTTCGGCAAA+AGG + chr5_3:18016013-18016032 None:intergenic 45.0%
ACGCCTTCCATCAGAAATGT+CGG + chr5_3:18016413-18016432 None:intergenic 45.0%
CACTGAACAAGACAAGGACA+GGG + chr5_3:18016526-18016545 None:intergenic 45.0%
ACACTGAACAAGACAAGGAC+AGG + chr5_3:18016527-18016546 None:intergenic 45.0%
CACTGACACTGAACAAGACA+AGG + chr5_3:18016532-18016551 None:intergenic 45.0%
GTTCAGTGTCAGTGCTTCAT+AGG - chr5_3:18016538-18016557 Msa0803060:CDS 45.0%
CTAGTTGCTGACAATGTAGG+AGG + chr5_3:18016930-18016949 None:intergenic 45.0%
! CCTCTAAAAAAAGGGTAGCC+CGG + chr5_3:18017630-18017649 None:intergenic 45.0%
! CAACTGGGCTTTGATTCACA+AGG + chr5_3:18017675-18017694 None:intergenic 45.0%
TTATCCTCAGGCTCAGTTTG+TGG - chr5_3:18017953-18017972 Msa0803060:intron 45.0%
ACTCAATTTGGTTGGGTGAC+TGG - chr5_3:18018022-18018041 Msa0803060:intron 45.0%
CCTCTTAAAAAAGGACAGCC+CGG + chr5_3:18018298-18018317 None:intergenic 45.0%
TTATCCTCAGGCTCAGTTTC+TGG - chr5_3:18018724-18018743 Msa0803060:intron 45.0%
ACTCAATTTGGTTGGGTGAC+TGG - chr5_3:18018022-18018041 Msa0803060:intron 45.0%
ATTCTGGCCAGGTTTGAAGA+GGG + chr5_3:18018866-18018885 None:intergenic 45.0%
AATTCTGGCCAGGTTTGAAG+AGG + chr5_3:18018867-18018886 None:intergenic 45.0%
TTACACACTCAATTCTGGCC+AGG + chr5_3:18018877-18018896 None:intergenic 45.0%
!! GCAAATGAGGGCTTTTTGAG+GGG - chr5_3:18019108-18019127 Msa0803060:intron 45.0%
CCTGTTGTTGAGTATGACCA+TGG + chr5_3:18019176-18019195 None:intergenic 45.0%
CCATGGTCATACTCAACAAC+AGG - chr5_3:18019173-18019192 Msa0803060:intron 45.0%
ACTGATGAACTCTGTCCATG+CGG + chr5_3:18019207-18019226 None:intergenic 45.0%
CATGGACAGAGTTCATCAGT+AGG - chr5_3:18019207-18019226 Msa0803060:intron 45.0%
TGGACAGAGTTCATCAGTAG+GGG - chr5_3:18019209-18019228 Msa0803060:intron 45.0%
CAAATTTGGGCTTGAGGAAG+AGG - chr5_3:18019248-18019267 Msa0803060:intron 45.0%
TTCTCATGCAAGAGCTTGTG+AGG - chr5_3:18019298-18019317 Msa0803060:intron 45.0%
!! AAAGAAACCAGGGCTTTGGA+CGG + chr5_3:18019430-18019449 None:intergenic 45.0%
TACTTCACCATCCAGTGCAA+TGG - chr5_3:18019698-18019717 Msa0803060:intron 45.0%
! ACAGTAGTAGCTCTACAAGC+TGG - chr5_3:18019721-18019740 Msa0803060:intron 45.0%
! TAGCTCTACAAGCTGGAACT+CGG - chr5_3:18019728-18019747 Msa0803060:intron 45.0%
TGAGTAGACTGCACTGAAGA+TGG + chr5_3:18019777-18019796 None:intergenic 45.0%
TCTGCAAACTCCAATTCCAG+AGG - chr5_3:18020145-18020164 Msa0803060:intron 45.0%
!! GCCTCAAAATCCTCTGGAAT+TGG + chr5_3:18020158-18020177 None:intergenic 45.0%
! ATGTTGGCCTCAAAATCCTC+TGG + chr5_3:18020164-18020183 None:intergenic 45.0%
CGAAATATCCAGAGGGAATG+AGG - chr5_3:18020187-18020206 Msa0803060:intron 45.0%
!! TTGTCCCAGCCATTTTCTGT+TGG + chr5_3:18020218-18020237 None:intergenic 45.0%
TGCTCTGTTAGTTGATCCAG+GGG + chr5_3:18020251-18020270 None:intergenic 45.0%
CTGCTCTGTTAGTTGATCCA+GGG + chr5_3:18020252-18020271 None:intergenic 45.0%
TCTGCTCTGTTAGTTGATCC+AGG + chr5_3:18020253-18020272 None:intergenic 45.0%
GGATCAACTAACAGAGCAGA+TGG - chr5_3:18020253-18020272 Msa0803060:intron 45.0%
!! TTTTGGGTCAGGGATTACCT+TGG + chr5_3:18020346-18020365 None:intergenic 45.0%
TCCCCAACTTGATGTTTCCT+TGG - chr5_3:18020655-18020674 Msa0803060:CDS 45.0%
!! TCCCATTTTTCCCATCACCA+AGG + chr5_3:18020675-18020694 None:intergenic 45.0%
GTGCACTTGTCAGACACTTT+GGG + chr5_3:18020740-18020759 None:intergenic 45.0%
CTAGGTACCATTCCATCTAG+TGG + chr5_3:18020926-18020945 None:intergenic 45.0%
! TGATTTTGTGTGTGGGGTGG+GGG + chr5_3:18015609-18015628 None:intergenic 50.0%
TTGAAGGGAGAAAAGGGGAC+AGG + chr5_3:18015648-18015667 None:intergenic 50.0%
TCCGAAATGGATGGAGCAAG+CGG - chr5_3:18015795-18015814 Msa0803060:three_prime_UTR 50.0%
GGGTTCAACCACCCAAATAC+CGG - chr5_3:18015836-18015855 Msa0803060:three_prime_UTR 50.0%
!! TTCGCGTTTAGCATCGGTGT+CGG + chr5_3:18015864-18015883 None:intergenic 50.0%
!! AATGTCGGCGGTGCTACAAA+GGG + chr5_3:18016398-18016417 None:intergenic 50.0%
!! AAATGTCGGCGGTGCTACAA+AGG + chr5_3:18016399-18016418 None:intergenic 50.0%
CCTTCCATCAGAAATGTCGG+CGG + chr5_3:18016410-18016429 None:intergenic 50.0%
! TTTCTGATGGAAGGCGTGTC+CGG - chr5_3:18016416-18016435 Msa0803060:CDS 50.0%
AGGACAGGGTACATCAACGA+TGG + chr5_3:18016512-18016531 None:intergenic 50.0%
TGTGGTTATAAGGGGGAGAC+AGG - chr5_3:18016701-18016720 Msa0803060:CDS 50.0%
CAAATCAGCGTGTACGGCAA+AGG + chr5_3:18016731-18016750 None:intergenic 50.0%
! CTTTGCCGTACACGCTGATT+TGG - chr5_3:18016729-18016748 Msa0803060:CDS 50.0%
CCACACCAAATCAGCGTGTA+CGG + chr5_3:18016737-18016756 None:intergenic 50.0%
GCAACTAGATGGAGCAGAAG+AGG - chr5_3:18016942-18016961 Msa0803060:CDS 50.0%
! ATGCAGGAGCTTTAGTGCAC+CGG - chr5_3:18017608-18017627 Msa0803060:intron 50.0%
!!! CCGGGCTACCCTTTTTTTAG+AGG - chr5_3:18017627-18017646 Msa0803060:intron 50.0%
ATGTCCACAAACTGAGCCTG+AGG + chr5_3:18017960-18017979 None:intergenic 50.0%
ACTAAAGCTCCTGCAAACGC+AGG + chr5_3:18018272-18018291 None:intergenic 50.0%
! TTGCAGGAGCTTTAGTGCAC+CGG - chr5_3:18018276-18018295 Msa0803060:intron 50.0%
!!! CCGGGCTGTCCTTTTTTAAG+AGG - chr5_3:18018295-18018314 Msa0803060:intron 50.0%
TTCCTGAACACTCTTGGGTG+TGG - chr5_3:18018474-18018493 Msa0803060:intron 50.0%
!! TTCCACACCCAAGAGTGTTC+AGG + chr5_3:18018479-18018498 None:intergenic 50.0%
ATGTCCAGAAACTGAGCCTG+AGG + chr5_3:18018731-18018750 None:intergenic 50.0%
GAAGGTTGACCCAGATCGTT+GGG - chr5_3:18019080-18019099 Msa0803060:intron 50.0%
AGTCGAAGAAAACCTGCCCA+TGG - chr5_3:18019156-18019175 Msa0803060:intron 50.0%
TGTTGAGTATGACCATGGGC+AGG + chr5_3:18019171-18019190 None:intergenic 50.0%
! GTAGGGGCATGTGTAGAAGT+CGG - chr5_3:18019225-18019244 Msa0803060:intron 50.0%
AGTCGGCAAATTTGGGCTTG+AGG - chr5_3:18019242-18019261 Msa0803060:intron 50.0%
CAGCAGCAACAAACCACTGA+CGG - chr5_3:18019327-18019346 Msa0803060:intron 50.0%
GCTGAACCATTGTTTGCAGC+TGG + chr5_3:18019353-18019372 None:intergenic 50.0%
ACAATGGTTCAGCGCCTTCA+AGG - chr5_3:18019360-18019379 Msa0803060:intron 50.0%
GTCGTTGCTCCATTCCTTGA+AGG + chr5_3:18019377-18019396 None:intergenic 50.0%
GAGCAAAGAAACCAGGGCTT+TGG + chr5_3:18019434-18019453 None:intergenic 50.0%
CTACTGTCCATTGCACTGGA+TGG + chr5_3:18019708-18019727 None:intergenic 50.0%
GCTACTACTGTCCATTGCAC+TGG + chr5_3:18019712-18019731 None:intergenic 50.0%
AGCTCTACAAGCTGGAACTC+GGG - chr5_3:18019729-18019748 Msa0803060:intron 50.0%
CTCGGGAGTAACTCTTCAAG+AGG - chr5_3:18019746-18019765 Msa0803060:intron 50.0%
GTAGACTGCACTGAAGATGG+AGG + chr5_3:18019774-18019793 None:intergenic 50.0%
CCTTGAGTCCCTGTTGACAT+TGG + chr5_3:18019804-18019823 None:intergenic 50.0%
CCAATGTCAACAGGGACTCA+AGG - chr5_3:18019801-18019820 Msa0803060:intron 50.0%
TTTGCAGATGCTGCAGCTTG+AGG + chr5_3:18019867-18019886 None:intergenic 50.0%
! GGCACAATCTCTGGTACTGA+AGG + chr5_3:18019963-18019982 None:intergenic 50.0%
GAGGTGCAGCCAACAGAAAA+TGG - chr5_3:18020206-18020225 Msa0803060:intron 50.0%
TGCAGCCAACAGAAAATGGC+TGG - chr5_3:18020210-18020229 Msa0803060:intron 50.0%
GCAGCCAACAGAAAATGGCT+GGG - chr5_3:18020211-18020230 Msa0803060:intron 50.0%
GGACAATAATACTCAGCCCC+TGG - chr5_3:18020232-18020251 Msa0803060:intron 50.0%
GCTTCTTGGTGAGCAAATGG+AGG + chr5_3:18020404-18020423 None:intergenic 50.0%
CGTGCACTTGTCAGACACTT+TGG + chr5_3:18020741-18020760 None:intergenic 50.0%
AGTGTCTGACAAGTGCACGT+TGG - chr5_3:18020742-18020761 Msa0803060:CDS 50.0%
GCCGCTTGCTCCATCCATTT+CGG + chr5_3:18015799-18015818 None:intergenic 55.0%
GAAATGGATGGAGCAAGCGG+CGG - chr5_3:18015798-18015817 Msa0803060:three_prime_UTR 55.0%
AGCACCGCCGACATTTCTGA+TGG - chr5_3:18016403-18016422 Msa0803060:CDS 55.0%
CCGCCGACATTTCTGATGGA+AGG - chr5_3:18016407-18016426 Msa0803060:CDS 55.0%
GTCCGGTATCTGACACGTGT+CGG - chr5_3:18016433-18016452 Msa0803060:CDS 55.0%
CACCGACACGTGTCAGATAC+CGG + chr5_3:18016438-18016457 None:intergenic 55.0%
!! CCGTACACGCTGATTTGGTG+TGG - chr5_3:18016734-18016753 Msa0803060:CDS 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG - chr5_3:18017609-18017628 Msa0803060:intron 55.0%
TTCCTGAACACGCTTGGGTG+TGG - chr5_3:18017714-18017733 Msa0803060:intron 55.0%
TTCCACACCCAAGCGTGTTC+AGG + chr5_3:18017719-18017738 None:intergenic 55.0%
! AAAATGGTGGGACCCCTTCC+CGG - chr5_3:18018244-18018263 Msa0803060:intron 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG - chr5_3:18017609-18017628 Msa0803060:intron 55.0%
GGAAGGTTGACCCAGATCGT+TGG - chr5_3:18019079-18019098 Msa0803060:intron 55.0%
GGCTTGAGGAAGAGGTTGAG+AGG - chr5_3:18019256-18019275 Msa0803060:intron 55.0%
TGACGGCCAGCTGCAAACAA+TGG - chr5_3:18019344-18019363 Msa0803060:intron 55.0%
GGTTCAGCGCCTTCAAGGAA+TGG - chr5_3:18019365-18019384 Msa0803060:intron 55.0%
!! CAAAAAGCGTCGGCTCAAGC+AGG - chr5_3:18019503-18019522 Msa0803060:intron 55.0%
ATGGCTCCCGAGACAGATGA+TGG - chr5_3:18020017-18020036 Msa0803060:intron 55.0%
TTTGTGTGTGGGGTGGGGGA+GGG + chr5_3:18015605-18015624 None:intergenic 60.0%
! TTTTGTGTGTGGGGTGGGGG+AGG + chr5_3:18015606-18015625 None:intergenic 60.0%
!! TTTAGCATCGGTGTCGGCGC+CGG + chr5_3:18015858-18015877 None:intergenic 60.0%
GGCGCGTTCGCGTTTAGCAT+CGG + chr5_3:18015870-18015889 None:intergenic 60.0%
GGACCCACCCGAATTCGCTA+GGG - chr5_3:18015986-18016005 Msa0803060:intron 60.0%
GGTCCCTAGCGAATTCGGGT+GGG + chr5_3:18015992-18016011 None:intergenic 60.0%
AGGTCCCTAGCGAATTCGGG+TGG + chr5_3:18015993-18016012 None:intergenic 60.0%
! GGGAAGGGGTCCCACCATTT+TGG + chr5_3:18018245-18018264 None:intergenic 60.0%
CAAACGCAGGATCCGGGAAG+GGG + chr5_3:18018259-18018278 None:intergenic 60.0%
GCAAACGCAGGATCCGGGAA+GGG + chr5_3:18018260-18018279 None:intergenic 60.0%
TGCAAACGCAGGATCCGGGA+AGG + chr5_3:18018261-18018280 None:intergenic 60.0%
TTCCCGGATCCTGCGTTTGC+AGG - chr5_3:18018260-18018279 Msa0803060:intron 60.0%
CTCCTGCAAACGCAGGATCC+GGG + chr5_3:18018265-18018284 None:intergenic 60.0%
GCTCCTGCAAACGCAGGATC+CGG + chr5_3:18018266-18018285 None:intergenic 60.0%
CAACAGGCTCAGCAACCGCA+TGG - chr5_3:18019189-18019208 Msa0803060:intron 60.0%
TGTTTGCAGCTGGCCGTCAG+TGG + chr5_3:18019343-18019362 None:intergenic 60.0%
!! GGCTTTGGACGGCTTTGGCA+AGG + chr5_3:18019419-18019438 None:intergenic 60.0%
!! ACCAGGGCTTTGGACGGCTT+TGG + chr5_3:18019424-18019443 None:intergenic 60.0%
!! AAGCGTCGGCTCAAGCAGGA+TGG - chr5_3:18019507-18019526 Msa0803060:intron 60.0%
GAGCAAGCTACCCCTCCTGA+TGG - chr5_3:18019546-18019565 Msa0803060:intron 60.0%
TGGCTGCACCTCATTCCCTC+TGG + chr5_3:18020198-18020217 None:intergenic 60.0%
TTGTGTGTGGGGTGGGGGAG+GGG + chr5_3:18015604-18015623 None:intergenic 65.0%
GATGGAGCAAGCGGCGGAAG+TGG - chr5_3:18015804-18015823 Msa0803060:three_prime_UTR 65.0%
!! TGTCGGCGCCGGTATTTGGG+TGG + chr5_3:18015847-18015866 None:intergenic 65.0%
!! CGGTGTCGGCGCCGGTATTT+GGG + chr5_3:18015850-18015869 None:intergenic 65.0%
!! TCGGTGTCGGCGCCGGTATT+TGG + chr5_3:18015851-18015870 None:intergenic 65.0%
GGGACCCACCCGAATTCGCT+AGG - chr5_3:18015985-18016004 Msa0803060:intron 65.0%
GCCAAAGCCGTCCAAAGCCC+TGG - chr5_3:18019420-18019439 Msa0803060:intron 65.0%
GGGTGGGGGAGGGGTTATGG+AGG + chr5_3:18015595-18015614 None:intergenic 70.0%
GTGGGGTGGGGGAGGGGTTA+TGG + chr5_3:18015598-18015617 None:intergenic 70.0%
GGAGCAAGCGGCGGAAGTGG+CGG - chr5_3:18015807-18015826 Msa0803060:three_prime_UTR 70.0%
GCAAGCGGCGGAAGTGGCGG+CGG - chr5_3:18015810-18015829 Msa0803060:three_prime_UTR 75.0%
GGCGGAAGTGGCGGCGGAGA+GGG - chr5_3:18015816-18015835 Msa0803060:three_prime_UTR 75.0%
! CGGCGGAAGTGGCGGCGGAG+AGG - chr5_3:18015815-18015834 Msa0803060:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 18015545 18021035 18015545 ID=Msa0803060;Name=Msa0803060
chr5_3 mRNA 18015545 18021035 18015545 ID=Msa0803060-mRNA-1;Parent=Msa0803060;Name=Msa0803060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=256|1|1|1|0.5|0.33|3|467|502
chr5_3 exon 18015545 18015971 18015545 ID=Msa0803060-mRNA-1:exon:7408;Parent=Msa0803060-mRNA-1
chr5_3 exon 18016233 18017508 18016233 ID=Msa0803060-mRNA-1:exon:7407;Parent=Msa0803060-mRNA-1
chr5_3 exon 18020507 18021035 18020507 ID=Msa0803060-mRNA-1:exon:7406;Parent=Msa0803060-mRNA-1
chr5_3 five_prime_UTR 18020780 18021035 18020780 ID=Msa0803060-mRNA-1:five_prime_utr;Parent=Msa0803060-mRNA-1
chr5_3 CDS 18020507 18020779 18020507 ID=Msa0803060-mRNA-1:cds;Parent=Msa0803060-mRNA-1
chr5_3 CDS 18016273 18017508 18016273 ID=Msa0803060-mRNA-1:cds;Parent=Msa0803060-mRNA-1
chr5_3 three_prime_UTR 18016233 18016272 18016233 ID=Msa0803060-mRNA-1:three_prime_utr;Parent=Msa0803060-mRNA-1
chr5_3 three_prime_UTR 18015545 18015971 18015545 ID=Msa0803060-mRNA-1:three_prime_utr;Parent=Msa0803060-mRNA-1
Gene Sequence

>Msa0803060

ATGGATGGAGCAAGCGGCGGAAGTGGCGGCGGAGAGGGTTCAACCACCCAAATACCGGCGCCGACACCGATGCTAAACGCGAACGCGCCGCCACCGTTTTTGAGCAAAACTTATGACATGGTGGATGATCCTTCAACAGATGCGATAGTTTCATGGAGCGCAACCAACAACAGTTTCGTTGTTTGGGACCCACCCGAATTCGCTAGGGACCTTTTGCCGAAGTTCTTCAAGCATAACAATTTCTCAAGCTTTGTGAGACAGTTGAATACTTATGGTTTCAGGAAGGTTGACCCAGATCGTTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCAATTGCTTAAGAGTATTAGTCGAAGAAAACCTGCCCATGGTCATACTCAACAACAGGCTCAGCAACCGCATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGCAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTTCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGACGGCCAGCTGCAAACAATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCCGTCCAAAGCCCTGGTTTCTTTGCTCAGTTTGTGCAACAACAAAATGACAGCAATAGGCGCATTACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGATGGTATTGCTGAAACAACAGAGCAAGCTACCCCTCCTGATGGACAAATTGTTAAATATCAACCTATGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCGCGTGTAGAATCTTTCAATAAAAACCCTGATAATTACTTGATTGGTGATGGTACTTCACCATCCAGTGCAATGGACAGTAGTAGCTCTACAAGCTGGAACTCGGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTACTCAAATTCCAATGTCAACAGGGACTCAAGGACACATCCCCTCAGCAGAAAAACCTGAAATTCTATCTGTACCTCAAGCTGCAGCATCTGCAAATGTTATGAAGGATGGAACACATGCAGCATCGACTATCCCGACTTCTCAAGCAGATGTTATAATGCCTGATATACCTTCAGTACCAGAGATTGTGCCTAAAAGTATTCTTGATATACCTGAAGACAATTATATGGCTCCCGAGACAGATGATGGATTTATGGATCCGAGTTCACTTGGATCATTACCCATTGATTTGGATTGTCTTTCACCCGGTGCAGACATTGATGATTTGTTAAGCAATTCTATTTGGGATGATCTTCTGCAAACTCCAATTCCAGAGGATTTTGAGGCCAACATTGACGAAATATCCAGAGGGAATGAGGTGCAGCCAACAGAAAATGGCTGGGACAATAATACTCAGCCCCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGATGCCAAAAGAATTTAA
Protein sequence

>Msa0803060

MDGASGGSGGGEGSTTQIPAPTPMLNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQATPPDGQIVKYQPMMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSSSSTSWNSGVTLQEVPPSSVQSTQIPMSTGTQGHIPSAEKPEILSVPQAAASANVMKDGTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPEDNYMAPETDDGFMDPSSLGSLPIDLDCLSPGADIDDLLSNSIWDDLLQTPIPEDFEANIDEISRGNEVQPTENGWDNNTQPLDQLTEQMGLLSSDAKRI*