Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804400 | RHN65248.1 | 92.308 | 65 | 5 | 0 | 57 | 121 | 2 | 66 | 3.49e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804400 | sp|O04539|SNL4_ARATH | 52.174 | 69 | 30 | 1 | 56 | 121 | 7 | 75 | 1.93e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804400 | A0A396IKI9 | 92.308 | 65 | 5 | 0 | 57 | 121 | 2 | 66 | 1.67e-32 | 123 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0804400 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804400 | MtrunA17_Chr3g0077861 | 92.308 | 65 | 5 | 0 | 57 | 121 | 2 | 66 | 3.21e-36 | 123 |
| Msa0804400 | MtrunA17_Chr3g0077911 | 90.769 | 65 | 6 | 0 | 57 | 121 | 2 | 66 | 1.61e-34 | 118 |
| Msa0804400 | MtrunA17_Chr3g0077811 | 68.750 | 64 | 16 | 1 | 62 | 121 | 12 | 75 | 4.27e-23 | 88.2 |
| Msa0804400 | MtrunA17_Chr3g0077891 | 67.188 | 64 | 17 | 1 | 62 | 121 | 7 | 70 | 2.89e-20 | 82.4 |
| Msa0804400 | MtrunA17_Chr3g0077941 | 65.625 | 64 | 18 | 1 | 62 | 121 | 7 | 70 | 8.84e-20 | 81.3 |
| Msa0804400 | MtrunA17_Chr3g0077881 | 65.625 | 64 | 18 | 1 | 62 | 121 | 7 | 70 | 9.74e-20 | 80.9 |
| Msa0804400 | MtrunA17_Chr8g0364231 | 55.072 | 69 | 28 | 1 | 56 | 121 | 35 | 103 | 1.25e-15 | 73.2 |
| Msa0804400 | MtrunA17_Chr5g0415031 | 55.882 | 68 | 27 | 1 | 57 | 121 | 37 | 104 | 2.55e-15 | 72.4 |
| Msa0804400 | MtrunA17_Chr6g0452001 | 50.000 | 68 | 31 | 1 | 57 | 121 | 57 | 124 | 5.93e-12 | 62.8 |
| Msa0804400 | MtrunA17_Chr1g0205811 | 52.381 | 63 | 27 | 1 | 62 | 121 | 13 | 75 | 7.73e-12 | 58.9 |
| Msa0804400 | MtrunA17_Chr1g0206771 | 47.143 | 70 | 34 | 1 | 55 | 121 | 8 | 77 | 6.61e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804400 | AT1G70060.2 | 52.174 | 69 | 30 | 1 | 56 | 121 | 7 | 75 | 1.96e-14 | 70.1 |
| Msa0804400 | AT1G70060.1 | 52.174 | 69 | 30 | 1 | 56 | 121 | 7 | 75 | 1.96e-14 | 70.1 |
| Msa0804400 | AT1G24190.3 | 49.275 | 69 | 32 | 1 | 56 | 121 | 7 | 75 | 7.49e-14 | 68.6 |
| Msa0804400 | AT1G24190.1 | 49.275 | 69 | 32 | 1 | 56 | 121 | 7 | 75 | 9.79e-14 | 68.2 |
| Msa0804400 | AT1G24190.2 | 49.275 | 69 | 32 | 1 | 56 | 121 | 7 | 75 | 9.98e-14 | 68.2 |
| Msa0804400 | AT1G59890.4 | 53.226 | 62 | 26 | 1 | 63 | 121 | 45 | 106 | 2.86e-12 | 63.9 |
| Msa0804400 | AT1G59890.2 | 53.226 | 62 | 26 | 1 | 63 | 121 | 45 | 106 | 3.06e-12 | 63.9 |
| Msa0804400 | AT1G59890.3 | 53.226 | 62 | 26 | 1 | 63 | 121 | 45 | 106 | 3.18e-12 | 63.9 |
| Msa0804400 | AT1G59890.1 | 53.226 | 62 | 26 | 1 | 63 | 121 | 45 | 106 | 3.18e-12 | 63.9 |
| Msa0804400 | AT4G12020.11 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.12e-12 | 62.8 |
| Msa0804400 | AT4G12020.6 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.31e-12 | 62.8 |
| Msa0804400 | AT4G12020.8 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.31e-12 | 62.8 |
| Msa0804400 | AT4G12020.7 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.32e-12 | 62.8 |
| Msa0804400 | AT4G12020.1 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.32e-12 | 62.8 |
| Msa0804400 | AT4G12020.9 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.32e-12 | 62.8 |
| Msa0804400 | AT4G12020.5 | 48.438 | 64 | 31 | 1 | 60 | 121 | 238 | 301 | 8.33e-12 | 62.8 |
| Msa0804400 | AT4G12020.10 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.34e-12 | 62.8 |
| Msa0804400 | AT4G12020.3 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.34e-12 | 62.8 |
| Msa0804400 | AT4G12020.4 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.34e-12 | 62.8 |
| Msa0804400 | AT4G12020.2 | 48.438 | 64 | 31 | 1 | 60 | 121 | 305 | 368 | 8.34e-12 | 62.8 |
| Msa0804400 | AT3G01320.1 | 50.000 | 68 | 31 | 1 | 57 | 121 | 51 | 118 | 8.74e-12 | 62.4 |
| Msa0804400 | AT3G01320.2 | 50.000 | 68 | 31 | 1 | 57 | 121 | 51 | 118 | 9.17e-12 | 62.4 |
| Msa0804400 | AT5G15020.2 | 48.529 | 68 | 32 | 1 | 57 | 121 | 46 | 113 | 2.85e-11 | 61.2 |
| Msa0804400 | AT5G15020.1 | 48.529 | 68 | 32 | 1 | 57 | 121 | 46 | 113 | 2.85e-11 | 61.2 |
Find 24 sgRNAs with CRISPR-Local
Find 550 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGTATGAGTTGTTTAA+AGG | 0.253520 | 5_3:+20267737 | Msa0804400:CDS |
| ATCTCAAAATTAAATCTTCA+TGG | 0.296791 | 5_3:-20267760 | None:intergenic |
| TTAGAAACATGGGCAGAAAA+AGG | 0.346204 | 5_3:-20258576 | None:intergenic |
| ATACTTCCAGAAGTATAAAA+AGG | 0.346895 | 5_3:+20258665 | Msa0804400:CDS |
| AGCAGTAAAACAAAAGATTA+TGG | 0.348530 | 5_3:+20267640 | Msa0804400:CDS |
| ACAAATTGTATTGGATTTCA+AGG | 0.384142 | 5_3:+20267682 | Msa0804400:CDS |
| AGGCTGAAAATATTGATACT+AGG | 0.410413 | 5_3:+20267702 | Msa0804400:CDS |
| TCCAGACAACTCTATGTTGT+GGG | 0.461559 | 5_3:-20258602 | None:intergenic |
| ACCCACAACATAGAGTTGTC+TGG | 0.489003 | 5_3:+20258601 | Msa0804400:CDS |
| ATATGAAATCAAACTTCCAT+TGG | 0.495726 | 5_3:+20267804 | Msa0804400:CDS |
| TACCATTGCCCATGTTTCAA+AGG | 0.507008 | 5_3:+20258638 | Msa0804400:CDS |
| GGCTGAAAATATTGATACTA+GGG | 0.509868 | 5_3:+20267703 | Msa0804400:CDS |
| AAAGTAAAAGATACGTTTCG+AGG | 0.529617 | 5_3:+20267885 | Msa0804400:CDS |
| TTCCAGACAACTCTATGTTG+TGG | 0.529757 | 5_3:-20258603 | None:intergenic |
| CTCCTTTGAAACATGGGCAA+TGG | 0.549332 | 5_3:-20258640 | None:intergenic |
| AAGGACAACTCTATGTTGTG+TGG | 0.571170 | 5_3:+20258703 | Msa0804400:CDS |
| GTATAACTCCTTTGAAACAT+GGG | 0.571476 | 5_3:-20258646 | None:intergenic |
| AGTATAACTCCTTTGAAACA+TGG | 0.578780 | 5_3:-20258647 | None:intergenic |
| AGGACAACTCTATGTTGTGT+GGG | 0.586718 | 5_3:+20258704 | Msa0804400:CDS |
| TAACGCTAATGCATCACCAC+GGG | 0.620032 | 5_3:-20267612 | None:intergenic |
| TCGTCATTATCATGATCCAA+TGG | 0.621838 | 5_3:-20267820 | None:intergenic |
| TTTCATATTCAGTTGCACGA+AGG | 0.679265 | 5_3:-20267789 | None:intergenic |
| ATGATGAAGAAGCGCACCCG+TGG | 0.703947 | 5_3:+20267596 | Msa0804400:intron |
| GTAACGCTAATGCATCACCA+CGG | 0.738440 | 5_3:-20267613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTATAATATTTTTTT+AGG | + | chr5_3:20260371-20260390 | Msa0804400:intron | 0.0% |
| !!! | TAATTTATAATATTTTTTTA+GGG | + | chr5_3:20260372-20260391 | Msa0804400:intron | 0.0% |
| !!! | TTTTTTATTTTATATATATT+TGG | + | chr5_3:20263437-20263456 | Msa0804400:intron | 0.0% |
| !!! | ATTTAAGATTTTACTTTAAT+TGG | + | chr5_3:20258348-20258367 | Msa0804400:intron | 10.0% |
| !!! | ACATTTTTTATTTGATTAAA+GGG | + | chr5_3:20258551-20258570 | Msa0804400:intron | 10.0% |
| !! | TAAAATATAAATAATAATGG+TGG | + | chr5_3:20260157-20260176 | Msa0804400:intron | 10.0% |
| !! | AAAATATAAATAATAATGGT+GGG | + | chr5_3:20260158-20260177 | Msa0804400:intron | 10.0% |
| !! | ATAGATATAAAAAAAATAGA+TGG | - | chr5_3:20260206-20260225 | None:intergenic | 10.0% |
| !!! | CAAAAATAGTTAAATTTTAA+TGG | - | chr5_3:20264469-20264488 | None:intergenic | 10.0% |
| !!! | ATTTATAAAGTTTTATTTCT+TGG | - | chr5_3:20264854-20264873 | None:intergenic | 10.0% |
| !!! | TTTGAAATTCATATAAAATT+TGG | + | chr5_3:20266099-20266118 | Msa0804400:intron | 10.0% |
| !!! | TTTAATTTATTATATAGTTC+TGG | - | chr5_3:20266663-20266682 | None:intergenic | 10.0% |
| !! | TATTATAATAAGTTGTAATT+TGG | - | chr5_3:20267135-20267154 | None:intergenic | 10.0% |
| !!! | CACATTTTTTATTTGATTAA+AGG | + | chr5_3:20258550-20258569 | Msa0804400:intron | 15.0% |
| !!! | CATTTTTTATTTGATTAAAG+GGG | + | chr5_3:20258552-20258571 | Msa0804400:intron | 15.0% |
| !!! | ATTTTTTATTTGATTAAAGG+GGG | + | chr5_3:20258553-20258572 | Msa0804400:intron | 15.0% |
| !! | GTAAGTAAATTAATCAATTA+AGG | + | chr5_3:20259721-20259740 | Msa0804400:intron | 15.0% |
| !! | TTGAAAATAATTAATAGTAG+TGG | + | chr5_3:20259943-20259962 | Msa0804400:intron | 15.0% |
| !!! | TATCGATATACTTTTTTTTT+TGG | - | chr5_3:20260461-20260480 | None:intergenic | 15.0% |
| !! | AATTAGAAAGAAAAACAATT+CGG | + | chr5_3:20260837-20260856 | Msa0804400:intron | 15.0% |
| !! | AGTGTTATAAATATTAATAG+TGG | - | chr5_3:20261343-20261362 | None:intergenic | 15.0% |
| !! | ATAACCAATTAATTCTAATT+TGG | + | chr5_3:20262060-20262079 | Msa0804400:intron | 15.0% |
| !! | TAACCAATTAATTCTAATTT+GGG | + | chr5_3:20262061-20262080 | Msa0804400:intron | 15.0% |
| !! | AAATTAAATAAGTCTCTATA+TGG | - | chr5_3:20262699-20262718 | None:intergenic | 15.0% |
| !!! | TAGAGACTTATTTAATTTTA+TGG | + | chr5_3:20262701-20262720 | Msa0804400:intron | 15.0% |
| !! | AGTTCAAATAATTATTTGAA+AGG | - | chr5_3:20263628-20263647 | None:intergenic | 15.0% |
| !! | TTAATAAAACTTATGATAGA+TGG | + | chr5_3:20263747-20263766 | Msa0804400:intron | 15.0% |
| !! | ATAAATCTTGAAAGAATATT+GGG | - | chr5_3:20263795-20263814 | None:intergenic | 15.0% |
| !! | TTTATCATAGTGTATTATAT+TGG | + | chr5_3:20263810-20263829 | Msa0804400:intron | 15.0% |
| !! | TAATATAATATGTAAACTTC+TGG | + | chr5_3:20264538-20264557 | Msa0804400:intron | 15.0% |
| !! | ATCTATTATATAGTTTCATT+TGG | - | chr5_3:20264765-20264784 | None:intergenic | 15.0% |
| !!! | ATAAATCATATGTAATTTTC+AGG | + | chr5_3:20264868-20264887 | Msa0804400:intron | 15.0% |
| !!! | GTTTTATATAACTAATATCA+TGG | - | chr5_3:20265405-20265424 | None:intergenic | 15.0% |
| !! | ATTTGTAATTGAATAATGAA+TGG | - | chr5_3:20265495-20265514 | None:intergenic | 15.0% |
| !!! | CTATTTTATCATGAAAAAAA+AGG | - | chr5_3:20265620-20265639 | None:intergenic | 15.0% |
| !! | TAACATCAAATTTACATAAA+CGG | + | chr5_3:20265693-20265712 | Msa0804400:intron | 15.0% |
| !! | AATTCATTGAGAATAAAATT+TGG | + | chr5_3:20265974-20265993 | Msa0804400:intron | 15.0% |
| !!! | ATTTGGTTTTTTAAATTTTC+AGG | + | chr5_3:20265991-20266010 | Msa0804400:intron | 15.0% |
| !!! | AAGTATTTTAATATCACTAA+AGG | - | chr5_3:20266618-20266637 | None:intergenic | 15.0% |
| !! | AACAATAATATGTATCTATA+AGG | + | chr5_3:20267059-20267078 | Msa0804400:intron | 15.0% |
| !! | TGTGTTATAAATATTAATAG+TGG | - | chr5_3:20267396-20267415 | None:intergenic | 15.0% |
| !! | AATAATTCAGTTTAATTCAA+AGG | - | chr5_3:20267549-20267568 | None:intergenic | 15.0% |
| !!! | ATCTTTTATACAAATTGTAT+TGG | + | chr5_3:20267673-20267692 | Msa0804400:CDS | 15.0% |
| !!! | TTTTACTTTAATTGGTTCAA+AGG | + | chr5_3:20258356-20258375 | Msa0804400:intron | 20.0% |
| !! | AAATAATAACTATGTTGTGT+GGG | - | chr5_3:20258755-20258774 | None:intergenic | 20.0% |
| !!! | TTGGAAGTTTTGTTTTTTAT+TGG | + | chr5_3:20259259-20259278 | Msa0804400:intron | 20.0% |
| !! | AGTAAATTAATCAATTAAGG+TGG | + | chr5_3:20259724-20259743 | Msa0804400:intron | 20.0% |
| !! | GTAAATTAATCAATTAAGGT+GGG | + | chr5_3:20259725-20259744 | Msa0804400:intron | 20.0% |
| !! | TAATAGACTAATAAATAGAG+AGG | - | chr5_3:20259886-20259905 | None:intergenic | 20.0% |
| !! | GTCTATTAATTTCTTCTATT+TGG | + | chr5_3:20259898-20259917 | Msa0804400:intron | 20.0% |
| !! | GATATAAAAAAAATAGATGG+TGG | - | chr5_3:20260203-20260222 | None:intergenic | 20.0% |
| !!! | TTTTAGCAGATTAATCTTTT+TGG | - | chr5_3:20260509-20260528 | None:intergenic | 20.0% |
| !!! | TACCAAAATTTTCATGTTTT+CGG | + | chr5_3:20260601-20260620 | Msa0804400:intron | 20.0% |
| !!! | ATAGAAGTATTATTATTCTC+TGG | + | chr5_3:20261205-20261224 | Msa0804400:intron | 20.0% |
| !!! | ATTTTAGTAAGGTTTTAATG+AGG | - | chr5_3:20261393-20261412 | None:intergenic | 20.0% |
| !! | TTGACAAAAAATGATATATC+AGG | + | chr5_3:20262196-20262215 | Msa0804400:intron | 20.0% |
| !! | GTTAATGACATAAACATTAT+CGG | - | chr5_3:20262540-20262559 | None:intergenic | 20.0% |
| !! | CAAATAATTATTTGAACTTC+AGG | + | chr5_3:20263630-20263649 | Msa0804400:intron | 20.0% |
| !! | GATAAATCTTGAAAGAATAT+TGG | - | chr5_3:20263796-20263815 | None:intergenic | 20.0% |
| !!! | TTCTCATCTTAGTAAATTTT+TGG | - | chr5_3:20263861-20263880 | None:intergenic | 20.0% |
| !! | ACTTACATATAGTAATAAGT+TGG | + | chr5_3:20263925-20263944 | Msa0804400:intron | 20.0% |
| !!! | TACAGTATAAACTCTATTTT+GGG | - | chr5_3:20263992-20264011 | None:intergenic | 20.0% |
| !!! | ATACAGTATAAACTCTATTT+TGG | - | chr5_3:20263993-20264012 | None:intergenic | 20.0% |
| !! | AAAATAGAGTTTATACTGTA+TGG | + | chr5_3:20263992-20264011 | Msa0804400:intron | 20.0% |
| !!! | AAAATAATCTCACATACTTT+TGG | + | chr5_3:20264192-20264211 | Msa0804400:intron | 20.0% |
| !! | TAACAATAATCATACATTGT+TGG | + | chr5_3:20264224-20264243 | Msa0804400:intron | 20.0% |
| !!! | ATTTAGTTGATCCATATTTT+CGG | + | chr5_3:20264300-20264319 | Msa0804400:intron | 20.0% |
| !!! | TATTTGATTGAAGAATCTTT+TGG | + | chr5_3:20264428-20264447 | Msa0804400:intron | 20.0% |
| !! | TATTATATTAAGTTTGTCGT+TGG | - | chr5_3:20264528-20264547 | None:intergenic | 20.0% |
| !!! | TTTAGCTCTTTTTATATCTA+TGG | - | chr5_3:20264819-20264838 | None:intergenic | 20.0% |
| !! | TTATGAGATAATAATCTTGA+AGG | + | chr5_3:20265058-20265077 | Msa0804400:intron | 20.0% |
| !!! | TCTATTATATGGATTGAATA+TGG | - | chr5_3:20265251-20265270 | None:intergenic | 20.0% |
| !!! | ACGATCATATTTCTATTATA+TGG | - | chr5_3:20265262-20265281 | None:intergenic | 20.0% |
| !! | TATAACTAATATCATGGTTA+TGG | - | chr5_3:20265399-20265418 | None:intergenic | 20.0% |
| !!! | TCTTGAAGAATATTTTTGAA+AGG | - | chr5_3:20265526-20265545 | None:intergenic | 20.0% |
| !!! | TTTTATCATGAAAAAAAAGG+AGG | - | chr5_3:20265617-20265636 | None:intergenic | 20.0% |
| !!! | GAATAATTTTCAAAGATCAT+TGG | - | chr5_3:20265909-20265928 | None:intergenic | 20.0% |
| !!! | CAAATTTTGTTTAAATCTGT+TGG | - | chr5_3:20266023-20266042 | None:intergenic | 20.0% |
| !! | TATTAAACGTTATGTCATTA+TGG | - | chr5_3:20266393-20266412 | None:intergenic | 20.0% |
| !! | TAATGACATAACGTTTAATA+TGG | + | chr5_3:20266393-20266412 | Msa0804400:intron | 20.0% |
| !! | TAGGAAAATAGAATAGTTTA+TGG | + | chr5_3:20267315-20267334 | Msa0804400:intron | 20.0% |
| !! | ATCTCAAAATTAAATCTTCA+TGG | - | chr5_3:20267763-20267782 | None:intergenic | 20.0% |
| ! | TGAGATAAATAGTTGTGAAA+TGG | + | chr5_3:20258226-20258245 | Msa0804400:intron | 25.0% |
| ! | AATCTTAAATGAAATGCAGA+AGG | - | chr5_3:20258338-20258357 | None:intergenic | 25.0% |
| ! | AATTCAATATGTTCAACATG+TGG | - | chr5_3:20258406-20258425 | None:intergenic | 25.0% |
| ! | AAGCAATGAAGCTAAATTTA+TGG | - | chr5_3:20258436-20258455 | None:intergenic | 25.0% |
| !!! | GCTCTCTTTTTTATTACTAA+CGG | + | chr5_3:20258472-20258491 | Msa0804400:intron | 25.0% |
| !! | TTTTTATTACTAACGGTGAT+AGG | + | chr5_3:20258479-20258498 | Msa0804400:intron | 25.0% |
| !! | ATACTTCCAGAAGTATAAAA+AGG | + | chr5_3:20258665-20258684 | Msa0804400:CDS | 25.0% |
| !! | ATAACTCCTTTTTATACTTC+TGG | - | chr5_3:20258674-20258693 | None:intergenic | 25.0% |
| !! | AAGGAGTTATACATTTTCAA+AGG | + | chr5_3:20258684-20258703 | Msa0804400:CDS | 25.0% |
| ! | GAAATAATAACTATGTTGTG+TGG | - | chr5_3:20258756-20258775 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCAACATTTTCG+TGG | + | chr5_3:20258879-20258898 | Msa0804400:intron | 25.0% |
| ! | ACAAAATAATAACCAGTGAT+CGG | - | chr5_3:20259191-20259210 | None:intergenic | 25.0% |
| !!! | TAGGTTTTTGTTTTAGCTTT+GGG | + | chr5_3:20259235-20259254 | Msa0804400:intron | 25.0% |
| !! | TTATTGGTGTTTATGATGTA+TGG | + | chr5_3:20259318-20259337 | Msa0804400:intron | 25.0% |
| !! | GTGTGTATGTATTTTCTTTT+AGG | + | chr5_3:20259340-20259359 | Msa0804400:intron | 25.0% |
| ! | TATGAAAAAAGTCATCATGT+TGG | - | chr5_3:20259789-20259808 | None:intergenic | 25.0% |
| !!! | AACATGATGACTTTTTTCAT+AGG | + | chr5_3:20259788-20259807 | Msa0804400:intron | 25.0% |
| ! | ATACAAAAAAACCATGTAGT+GGG | - | chr5_3:20259987-20260006 | None:intergenic | 25.0% |
| ! | ACTACATGGATAATATCATT+TGG | - | chr5_3:20260020-20260039 | None:intergenic | 25.0% |
| ! | TGTATCTTTATCTATCCAAA+TGG | - | chr5_3:20260120-20260139 | None:intergenic | 25.0% |
| ! | TTTCCATTTGGCAAAATAAA+TGG | - | chr5_3:20260249-20260268 | None:intergenic | 25.0% |
| !! | ATCCGAAAACATGAAAATTT+TGG | - | chr5_3:20260606-20260625 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTCGCTTGTTTTT+GGG | - | chr5_3:20260786-20260805 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTTCGCTTGTTTT+TGG | - | chr5_3:20260787-20260806 | None:intergenic | 25.0% |
| ! | ACTTCTAGATATATCAAAGA+GGG | - | chr5_3:20260899-20260918 | None:intergenic | 25.0% |
| ! | TACTTCTAGATATATCAAAG+AGG | - | chr5_3:20260900-20260919 | None:intergenic | 25.0% |
| ! | AGAAGTAGAAAAAATTGTGA+CGG | + | chr5_3:20260913-20260932 | Msa0804400:intron | 25.0% |
| ! | TATGCACAATGCATAATATA+TGG | - | chr5_3:20260987-20261006 | None:intergenic | 25.0% |
| ! | TTACAAATGAGCTCTATTTA+TGG | + | chr5_3:20261242-20261261 | Msa0804400:intron | 25.0% |
| ! | TACAAATGAGCTCTATTTAT+GGG | + | chr5_3:20261243-20261262 | Msa0804400:intron | 25.0% |
| !!! | CAAATAACAAATGGGTTAAT+GGG | - | chr5_3:20261315-20261334 | None:intergenic | 25.0% |
| ! | TTACTAAAATAAAACCCAGT+GGG | + | chr5_3:20261403-20261422 | Msa0804400:intron | 25.0% |
| !!! | ACTATAATTTTTTTCCCACT+GGG | - | chr5_3:20261420-20261439 | None:intergenic | 25.0% |
| ! | TGGGAAAAAAATTATAGTGA+AGG | + | chr5_3:20261422-20261441 | Msa0804400:intron | 25.0% |
| ! | GAGAAACTTGTATTAAGAAT+TGG | - | chr5_3:20261602-20261621 | None:intergenic | 25.0% |
| ! | AGTTTCTCAAAAACTTTACT+TGG | + | chr5_3:20261614-20261633 | Msa0804400:intron | 25.0% |
| ! | GTTTCTCAAAAACTTTACTT+GGG | + | chr5_3:20261615-20261634 | Msa0804400:intron | 25.0% |
| ! | TTGAAAGAAGGATACATTAA+AGG | - | chr5_3:20261764-20261783 | None:intergenic | 25.0% |
| ! | AATAATTGTGGTTTATCTTC+TGG | - | chr5_3:20261839-20261858 | None:intergenic | 25.0% |
| ! | CAACATATGCAAAATAATTG+TGG | - | chr5_3:20261851-20261870 | None:intergenic | 25.0% |
| ! | ACAAATTACTTGTTTAGAAG+TGG | - | chr5_3:20261995-20262014 | None:intergenic | 25.0% |
| ! | GTACCCAAATTAGAATTAAT+TGG | - | chr5_3:20262067-20262086 | None:intergenic | 25.0% |
| ! | TAATTCTAATTTGGGTACTT+TGG | + | chr5_3:20262069-20262088 | Msa0804400:intron | 25.0% |
| ! | AATTCTAATTTGGGTACTTT+GGG | + | chr5_3:20262070-20262089 | Msa0804400:intron | 25.0% |
| ! | TGTCTCATCAAAATCAATTT+CGG | + | chr5_3:20262927-20262946 | Msa0804400:intron | 25.0% |
| !! | TCTTAATAAGAGAAAGGTAT+TGG | - | chr5_3:20263084-20263103 | None:intergenic | 25.0% |
| ! | AAACTCTCTTAATAAGAGAA+AGG | - | chr5_3:20263090-20263109 | None:intergenic | 25.0% |
| ! | AATGTAGATAAAGCGAAAAT+TGG | - | chr5_3:20263145-20263164 | None:intergenic | 25.0% |
| ! | AAAAAACCTCGAATAAGAAA+AGG | - | chr5_3:20263422-20263441 | None:intergenic | 25.0% |
| !! | TATATATATTTGGAACCGAT+TGG | + | chr5_3:20263447-20263466 | Msa0804400:intron | 25.0% |
| ! | CAATATTAGAATATCCTACA+GGG | + | chr5_3:20263505-20263524 | Msa0804400:intron | 25.0% |
| !!! | TCTAATTCATCATTGGTTTT+AGG | - | chr5_3:20263899-20263918 | None:intergenic | 25.0% |
| ! | TAAAACCAATGATGAATTAG+AGG | + | chr5_3:20263898-20263917 | Msa0804400:intron | 25.0% |
| ! | AAAACCAATGATGAATTAGA+GGG | + | chr5_3:20263899-20263918 | Msa0804400:intron | 25.0% |
| ! | GCATATGCTCATAAAAAAAA+TGG | - | chr5_3:20264076-20264095 | None:intergenic | 25.0% |
| ! | GAATAAATACACCGAAAATA+TGG | - | chr5_3:20264314-20264333 | None:intergenic | 25.0% |
| ! | CAAAGGAAATAGAAAATTTG+AGG | - | chr5_3:20264383-20264402 | None:intergenic | 25.0% |
| !! | CTCAAATTTTCTATTTCCTT+TGG | + | chr5_3:20264381-20264400 | Msa0804400:intron | 25.0% |
| !!! | GTCTTAACTTTTTTTTCCAA+AGG | - | chr5_3:20264400-20264419 | None:intergenic | 25.0% |
| !! | TTTTTGCATCAAAATGAATC+TGG | + | chr5_3:20264483-20264502 | Msa0804400:intron | 25.0% |
| !! | TTTTGCATCAAAATGAATCT+GGG | + | chr5_3:20264484-20264503 | Msa0804400:intron | 25.0% |
| ! | GAGTAATCTTTGTAGTTATT+CGG | + | chr5_3:20264594-20264613 | Msa0804400:intron | 25.0% |
| ! | AGTAATCTTTGTAGTTATTC+GGG | + | chr5_3:20264595-20264614 | Msa0804400:intron | 25.0% |
| !! | AAAGATGATTTGTAAACTTC+TGG | + | chr5_3:20264696-20264715 | Msa0804400:intron | 25.0% |
| ! | AGTTTCATTTGGATACATTA+TGG | - | chr5_3:20264754-20264773 | None:intergenic | 25.0% |
| ! | TTTGTGAAGATATCAAACTT+TGG | - | chr5_3:20264934-20264953 | None:intergenic | 25.0% |
| ! | CTAATCTAAGTTCATACTAA+AGG | + | chr5_3:20265318-20265337 | Msa0804400:intron | 25.0% |
| !! | TAAAAAACGGTGATTTTTCT+TGG | - | chr5_3:20265722-20265741 | None:intergenic | 25.0% |
| !! | TATTAAAGCATTAGTTCTTC+AGG | + | chr5_3:20265759-20265778 | Msa0804400:intron | 25.0% |
| ! | TTCTTCAAGTAATCCTTAAT+AGG | + | chr5_3:20265926-20265945 | Msa0804400:intron | 25.0% |
| ! | TCTTGAAGAACTTAAATACT+CGG | - | chr5_3:20266230-20266249 | None:intergenic | 25.0% |
| !!! | AGTTTTTAAGAAATCCTTCA+GGG | + | chr5_3:20266839-20266858 | Msa0804400:intron | 25.0% |
| ! | TGAATTCTTGATGAATTCAA+AGG | - | chr5_3:20266873-20266892 | None:intergenic | 25.0% |
| ! | TGAATTCATCAAGAATTCAT+TGG | + | chr5_3:20266874-20266893 | Msa0804400:intron | 25.0% |
| !! | AGTTTTTAAACAATCCTTCA+AGG | + | chr5_3:20266908-20266927 | Msa0804400:intron | 25.0% |
| !!! | AATTTGGTATCGATGATTAT+AGG | - | chr5_3:20267119-20267138 | None:intergenic | 25.0% |
| ! | TAGAAACAATAATAGAGAGA+AGG | + | chr5_3:20261165-20261184 | Msa0804400:intron | 25.0% |
| !!! | AGAGAAGTATTATTATTCTC+TGG | + | chr5_3:20267258-20267277 | Msa0804400:intron | 25.0% |
| !!! | CAAATAACAAATGGGTTAAT+GGG | - | chr5_3:20261315-20261334 | None:intergenic | 25.0% |
| ! | AGCAAATACCATTGTATTTA+TGG | - | chr5_3:20267465-20267484 | None:intergenic | 25.0% |
| ! | AGCAGTAAAACAAAAGATTA+TGG | + | chr5_3:20267640-20267659 | Msa0804400:CDS | 25.0% |
| ! | ACAAATTGTATTGGATTTCA+AGG | + | chr5_3:20267682-20267701 | Msa0804400:CDS | 25.0% |
| ! | ATATGAAATCAAACTTCCAT+TGG | + | chr5_3:20267804-20267823 | Msa0804400:CDS | 25.0% |
| AATGCAGAAGGAGAAAAAAT+AGG | - | chr5_3:20258326-20258345 | None:intergenic | 30.0% | |
| CAATGAAGCTAAATTTATGG+TGG | - | chr5_3:20258433-20258452 | None:intergenic | 30.0% | |
| !! | TTGTGGGTTTTTAGAAACAT+GGG | - | chr5_3:20258589-20258608 | None:intergenic | 30.0% |
| !! | GTATAACTCCTTTGAAACAT+GGG | - | chr5_3:20258649-20258668 | None:intergenic | 30.0% |
| !! | AGTATAACTCCTTTGAAACA+TGG | - | chr5_3:20258650-20258669 | None:intergenic | 30.0% |
| ! | TTATTATTTCTCCTTTGTGC+AGG | + | chr5_3:20258766-20258785 | Msa0804400:intron | 30.0% |
| ! | TATTATTTCTCCTTTGTGCA+GGG | + | chr5_3:20258767-20258786 | Msa0804400:intron | 30.0% |
| ATGTTGAAAAAAGAAGCCAA+CGG | - | chr5_3:20258874-20258893 | None:intergenic | 30.0% | |
| !!! | GGTTTGTTTTTATGCTTGTT+CGG | + | chr5_3:20258977-20258996 | Msa0804400:intron | 30.0% |
| AAATTCCTAAGTCAGTGAAA+AGG | - | chr5_3:20259020-20259039 | None:intergenic | 30.0% | |
| ACTCTCGAATCAAATCATTA+AGG | - | chr5_3:20259160-20259179 | None:intergenic | 30.0% | |
| !! | TGGTTATTATTTTGTTCTGC+TGG | + | chr5_3:20259196-20259215 | Msa0804400:intron | 30.0% |
| !!! | CTAGGTTTTTGTTTTAGCTT+TGG | + | chr5_3:20259234-20259253 | Msa0804400:intron | 30.0% |
| !!! | TTTTGTTTTAGCTTTGGGTT+TGG | + | chr5_3:20259240-20259259 | Msa0804400:intron | 30.0% |
| !!! | TGTTTTTTATTGGTGTGTGT+TGG | + | chr5_3:20259269-20259288 | Msa0804400:intron | 30.0% |
| TAAAGACACAACTTCACTTA+AGG | - | chr5_3:20259301-20259320 | None:intergenic | 30.0% | |
| AAGTGAAGTTGTGTCTTTAT+TGG | + | chr5_3:20259302-20259321 | Msa0804400:intron | 30.0% | |
| TATCAAAAGACGCCATATAT+AGG | - | chr5_3:20259373-20259392 | None:intergenic | 30.0% | |
| !!! | CAATTGCAATGTTTTTTGAG+GGG | - | chr5_3:20259607-20259626 | None:intergenic | 30.0% |
| !!! | GCAATTGCAATGTTTTTTGA+GGG | - | chr5_3:20259608-20259627 | None:intergenic | 30.0% |
| CATGTTGGCAAATGATATTA+GGG | - | chr5_3:20259774-20259793 | None:intergenic | 30.0% | |
| TCATGTTGGCAAATGATATT+AGG | - | chr5_3:20259775-20259794 | None:intergenic | 30.0% | |
| GGAACTGTAAATATTCTGAT+AGG | + | chr5_3:20259809-20259828 | Msa0804400:intron | 30.0% | |
| GATACAAAAAAACCATGTAG+TGG | - | chr5_3:20259988-20260007 | None:intergenic | 30.0% | |
| !!! | ATCCATGTAGTTTTAGCAAA+TGG | + | chr5_3:20260029-20260048 | Msa0804400:intron | 30.0% |
| GGATCTTAATTAATGCCAAA+TGG | + | chr5_3:20260055-20260074 | Msa0804400:intron | 30.0% | |
| GAAATGGAGAAAGACATAAA+TGG | - | chr5_3:20260095-20260114 | None:intergenic | 30.0% | |
| ATCTATCCAAATGGAAGAAA+TGG | - | chr5_3:20260111-20260130 | None:intergenic | 30.0% | |
| !!! | ACTCCATTTATTTTGCCAAA+TGG | + | chr5_3:20260243-20260262 | Msa0804400:intron | 30.0% |
| ATCCATGTCATGGTATAAAA+CGG | + | chr5_3:20260540-20260559 | Msa0804400:intron | 30.0% | |
| CTTCTAGATATATCAAAGAG+GGG | - | chr5_3:20260898-20260917 | None:intergenic | 30.0% | |
| !!! | ACGGCTAGGTTTTTATTTTT+TGG | + | chr5_3:20260932-20260951 | Msa0804400:intron | 30.0% |
| !!! | GCTAGGTTTTTATTTTTTGG+TGG | + | chr5_3:20260935-20260954 | Msa0804400:intron | 30.0% |
| !!! | AGGTTTTTATTTTTTGGTGG+TGG | + | chr5_3:20260938-20260957 | Msa0804400:intron | 30.0% |
| CACAATGCATAATATATGGA+AGG | - | chr5_3:20260983-20261002 | None:intergenic | 30.0% | |
| AGTATTATTATTCTCTGGTG+TGG | + | chr5_3:20261210-20261229 | Msa0804400:intron | 30.0% | |
| TGGGAAAATAGAATAGCTTA+TGG | + | chr5_3:20261262-20261281 | Msa0804400:intron | 30.0% | |
| !! | CCAAATAACAAATGGGTTAA+TGG | - | chr5_3:20261316-20261335 | None:intergenic | 30.0% |
| !! | CCATTAACCCATTTGTTATT+TGG | + | chr5_3:20261313-20261332 | Msa0804400:intron | 30.0% |
| TGGATGTCCAAATAACAAAT+GGG | - | chr5_3:20261323-20261342 | None:intergenic | 30.0% | |
| !!! | CACTGGGTTTTATTTTAGTA+AGG | - | chr5_3:20261404-20261423 | None:intergenic | 30.0% |
| CTTACTAAAATAAAACCCAG+TGG | + | chr5_3:20261402-20261421 | Msa0804400:intron | 30.0% | |
| !!! | CACTATAATTTTTTTCCCAC+TGG | - | chr5_3:20261421-20261440 | None:intergenic | 30.0% |
| AGAGATATTTGTCTTCATGA+GGG | - | chr5_3:20261566-20261585 | None:intergenic | 30.0% | |
| AAGAGATATTTGTCTTCATG+AGG | - | chr5_3:20261567-20261586 | None:intergenic | 30.0% | |
| GAAGACAAATATCTCTTAGA+CGG | + | chr5_3:20261570-20261589 | Msa0804400:intron | 30.0% | |
| !! | TGGGAGAAATATGTTTTGTT+CGG | + | chr5_3:20261735-20261754 | Msa0804400:intron | 30.0% |
| !!! | AGTTTTAAAGCGTTTCTACA+TGG | - | chr5_3:20262370-20262389 | None:intergenic | 30.0% |
| TTACAAATTGAGCACGTAAA+AGG | - | chr5_3:20262429-20262448 | None:intergenic | 30.0% | |
| CTCTTTCTTTAAGCAATCTA+TGG | + | chr5_3:20262491-20262510 | Msa0804400:intron | 30.0% | |
| TTTAAGCAATCTATGGCTTA+TGG | + | chr5_3:20262498-20262517 | Msa0804400:intron | 30.0% | |
| ! | GATCTTTTCATAACAGTACA+TGG | + | chr5_3:20262591-20262610 | Msa0804400:intron | 30.0% |
| ! | CTATATGGACTAAAACAATC+AGG | - | chr5_3:20262684-20262703 | None:intergenic | 30.0% |
| GTCTCATCAAAATCAATTTC+GGG | + | chr5_3:20262928-20262947 | Msa0804400:intron | 30.0% | |
| ! | GAAGCAAGTTGGATATAAAT+GGG | - | chr5_3:20263034-20263053 | None:intergenic | 30.0% |
| ! | TGAAGCAAGTTGGATATAAA+TGG | - | chr5_3:20263035-20263054 | None:intergenic | 30.0% |
| ! | TCAATTGAACCTTTCCATTT+TGG | + | chr5_3:20263119-20263138 | Msa0804400:intron | 30.0% |
| CTACATTCTTTAATAGACCT+TGG | + | chr5_3:20263158-20263177 | Msa0804400:intron | 30.0% | |
| ! | TACTGAGATCTCTTCATTTT+CGG | + | chr5_3:20263289-20263308 | Msa0804400:intron | 30.0% |
| GAATAAGAAAAGGAGCTTAA+AGG | - | chr5_3:20263412-20263431 | None:intergenic | 30.0% | |
| GCAATATTAGAATATCCTAC+AGG | + | chr5_3:20263504-20263523 | Msa0804400:intron | 30.0% | |
| TGCATATGAGTTATATCTTG+AGG | + | chr5_3:20263579-20263598 | Msa0804400:intron | 30.0% | |
| !! | TAGGTTGATTATCGATTGAT+GGG | - | chr5_3:20263706-20263725 | None:intergenic | 30.0% |
| AACTTTAGACGTCTAAAGAA+TGG | + | chr5_3:20264040-20264059 | Msa0804400:intron | 30.0% | |
| GATCAACTAAATTACATGTG+TGG | - | chr5_3:20264292-20264311 | None:intergenic | 30.0% | |
| ! | CGATAATACATTAGCTCTTT+AGG | + | chr5_3:20264565-20264584 | Msa0804400:intron | 30.0% |
| AAATATATAACGATCCCTGA+AGG | - | chr5_3:20264659-20264678 | None:intergenic | 30.0% | |
| TATTGCATAAGACTTCTAGA+TGG | - | chr5_3:20265173-20265192 | None:intergenic | 30.0% | |
| CTTATTGCATGATCAAAGTT+TGG | - | chr5_3:20265215-20265234 | None:intergenic | 30.0% | |
| TATTGATATGATACATGCCA+AGG | - | chr5_3:20265354-20265373 | None:intergenic | 30.0% | |
| TAGTATGAACAATTCACTTC+TGG | + | chr5_3:20265428-20265447 | Msa0804400:intron | 30.0% | |
| AGTATGAACAATTCACTTCT+GGG | + | chr5_3:20265429-20265448 | Msa0804400:intron | 30.0% | |
| GCTTTAATAAACACCCTTAT+GGG | - | chr5_3:20265748-20265767 | None:intergenic | 30.0% | |
| TGCTTTAATAAACACCCTTA+TGG | - | chr5_3:20265749-20265768 | None:intergenic | 30.0% | |
| TCATTGTTCATGAAGATTTG+TGG | - | chr5_3:20265792-20265811 | None:intergenic | 30.0% | |
| TTCAAGTAATCCTTAATAGG+AGG | + | chr5_3:20265929-20265948 | Msa0804400:intron | 30.0% | |
| AATATTGATGCCTCCTATTA+AGG | - | chr5_3:20265942-20265961 | None:intergenic | 30.0% | |
| CTACAATTAACTGATTGGAT+CGG | - | chr5_3:20266152-20266171 | None:intergenic | 30.0% | |
| CTACGAATTCATGAAGAATT+CGG | - | chr5_3:20266198-20266217 | None:intergenic | 30.0% | |
| !! | TGTTTTTAAGCAATCCTTCA+GGG | + | chr5_3:20266770-20266789 | Msa0804400:intron | 30.0% |
| TGAATTCCTGATGAATTCAA+AGG | - | chr5_3:20266804-20266823 | None:intergenic | 30.0% | |
| TGAATTCATCAGGAATTCAT+TGG | + | chr5_3:20266805-20266824 | Msa0804400:intron | 30.0% | |
| !! | GAGTTTTTAAGAAATCCTTC+AGG | + | chr5_3:20266838-20266857 | Msa0804400:intron | 30.0% |
| CCTTTCTGAATATAGTTCTT+CGG | + | chr5_3:20266938-20266957 | Msa0804400:intron | 30.0% | |
| ! | ATCTTTTATGCAATCCTTCA+TGG | + | chr5_3:20266984-20267003 | Msa0804400:intron | 30.0% |
| TTGTTGCAATTCCATCAATT+TGG | - | chr5_3:20267093-20267112 | None:intergenic | 30.0% | |
| AGTATTATTATTCTCTGGTG+TGG | + | chr5_3:20261210-20261229 | Msa0804400:intron | 30.0% | |
| ! | TACAGATGAGCTCTTTTTAT+AGG | + | chr5_3:20267296-20267315 | Msa0804400:intron | 30.0% |
| !! | CCAAATAACAAATGGGTTAA+TGG | - | chr5_3:20261316-20261335 | None:intergenic | 30.0% |
| !! | CCATTAACCCATTTGTTATT+TGG | + | chr5_3:20261313-20261332 | Msa0804400:intron | 30.0% |
| TGGATGTCCAAATAACAAAT+GGG | - | chr5_3:20261323-20261342 | None:intergenic | 30.0% | |
| !! | TTCTGAAGCCATAAATACAA+TGG | + | chr5_3:20267454-20267473 | Msa0804400:intron | 30.0% |
| AGGCTGAAAATATTGATACT+AGG | + | chr5_3:20267702-20267721 | Msa0804400:CDS | 30.0% | |
| GGCTGAAAATATTGATACTA+GGG | + | chr5_3:20267703-20267722 | Msa0804400:CDS | 30.0% | |
| AGAGTGTATGAGTTGTTTAA+AGG | + | chr5_3:20267737-20267756 | Msa0804400:CDS | 30.0% | |
| AAAGTAAAAGATACGTTTCG+AGG | + | chr5_3:20267885-20267904 | Msa0804400:CDS | 30.0% | |
| TGGTGTATGGTTTCAACATT+AGG | + | chr5_3:20258196-20258215 | Msa0804400:intron | 35.0% | |
| GGTGTATGGTTTCAACATTA+GGG | + | chr5_3:20258197-20258216 | Msa0804400:intron | 35.0% | |
| !!! | TCTGTGGTTGTGTTTTGTTT+TGG | + | chr5_3:20258280-20258299 | Msa0804400:intron | 35.0% |
| TTAGAAACATGGGCAGAAAA+AGG | - | chr5_3:20258579-20258598 | None:intergenic | 35.0% | |
| !! | GTTGTGGGTTTTTAGAAACA+TGG | - | chr5_3:20258590-20258609 | None:intergenic | 35.0% |
| !! | TGTGTGGGTTTTTAGAAACA+TGG | + | chr5_3:20258719-20258738 | Msa0804400:intron | 35.0% |
| !! | GTGTGGGTTTTTAGAAACAT+GGG | + | chr5_3:20258720-20258739 | Msa0804400:intron | 35.0% |
| AGATCGTGGAAACAAGAAAT+CGG | - | chr5_3:20258914-20258933 | None:intergenic | 35.0% | |
| !!! | TCTGTTTTCTTGTTGGTTTG+TGG | + | chr5_3:20258931-20258950 | Msa0804400:intron | 35.0% |
| !! | TGTTGGTTTGTGGTTTGATT+TGG | + | chr5_3:20258941-20258960 | Msa0804400:intron | 35.0% |
| GGAATTTGTCATGTCGATAA+TGG | + | chr5_3:20259033-20259052 | Msa0804400:intron | 35.0% | |
| ! | ATTTGTCATGTCGATAATGG+TGG | + | chr5_3:20259036-20259055 | Msa0804400:intron | 35.0% |
| ! | TTTGTCATGTCGATAATGGT+GGG | + | chr5_3:20259037-20259056 | Msa0804400:intron | 35.0% |
| ! | GAAGTTAGTCTCTAGTTTCA+AGG | + | chr5_3:20259084-20259103 | Msa0804400:intron | 35.0% |
| !! | AGTCTCTAGTTTCAAGGTTT+TGG | + | chr5_3:20259090-20259109 | Msa0804400:intron | 35.0% |
| !! | GTCTCTAGTTTCAAGGTTTT+GGG | + | chr5_3:20259091-20259110 | Msa0804400:intron | 35.0% |
| !!! | TCAAGGTTTTGGGTAGATTA+AGG | + | chr5_3:20259101-20259120 | Msa0804400:intron | 35.0% |
| ! | TATTTTGTTCTGCTGGTATG+TGG | + | chr5_3:20259203-20259222 | Msa0804400:intron | 35.0% |
| ! | ATTTTGTTCTGCTGGTATGT+GGG | + | chr5_3:20259204-20259223 | Msa0804400:intron | 35.0% |
| !!! | CGCAATTGCAATGTTTTTTG+AGG | - | chr5_3:20259609-20259628 | None:intergenic | 35.0% |
| ! | CTCCATTTGCTAAAACTACA+TGG | - | chr5_3:20260034-20260053 | None:intergenic | 35.0% |
| !!! | TGTAGTTTTAGCAAATGGAG+AGG | + | chr5_3:20260034-20260053 | Msa0804400:intron | 35.0% |
| GAAAGGATCTTAACTCCATT+TGG | - | chr5_3:20260073-20260092 | None:intergenic | 35.0% | |
| GGAGAAAGACATAAATGGAA+AGG | - | chr5_3:20260090-20260109 | None:intergenic | 35.0% | |
| CTTTCTCCATTTCTTCCATT+TGG | + | chr5_3:20260102-20260121 | Msa0804400:intron | 35.0% | |
| GGTGGATCCTATCATTAAAT+GGG | - | chr5_3:20260185-20260204 | None:intergenic | 35.0% | |
| ! | TGGTGGATCCTATCATTAAA+TGG | - | chr5_3:20260186-20260205 | None:intergenic | 35.0% |
| GGGTTAAGATCATTTCCATT+TGG | - | chr5_3:20260261-20260280 | None:intergenic | 35.0% | |
| CTTGAACTTCGCATTACTTT+AGG | + | chr5_3:20260328-20260347 | Msa0804400:intron | 35.0% | |
| TAGAAAAAATTGTGACGGCT+AGG | + | chr5_3:20260918-20260937 | Msa0804400:intron | 35.0% | |
| !!! | TTTTATTTTTTGGTGGTGGC+CGG | + | chr5_3:20260942-20260961 | Msa0804400:intron | 35.0% |
| TGCATAATATATGGAAGGTC+CGG | - | chr5_3:20260978-20260997 | None:intergenic | 35.0% | |
| GACGACTAGGGTTTAAAAAA+GGG | + | chr5_3:20261032-20261051 | Msa0804400:intron | 35.0% | |
| GTGGATGTCCAAATAACAAA+TGG | - | chr5_3:20261324-20261343 | None:intergenic | 35.0% | |
| ATATTTATAACACTCCCCCT+TGG | + | chr5_3:20261349-20261368 | Msa0804400:intron | 35.0% | |
| AGATATTTGTCTTCATGAGG+GGG | - | chr5_3:20261564-20261583 | None:intergenic | 35.0% | |
| GAGATATTTGTCTTCATGAG+GGG | - | chr5_3:20261565-20261584 | None:intergenic | 35.0% | |
| ATCACGGGTGAAAAAGAATT+TGG | + | chr5_3:20261715-20261734 | Msa0804400:intron | 35.0% | |
| TCACGGGTGAAAAAGAATTT+GGG | + | chr5_3:20261716-20261735 | Msa0804400:intron | 35.0% | |
| ATGTATCCTTCTTTCAACTG+AGG | + | chr5_3:20261767-20261786 | Msa0804400:intron | 35.0% | |
| TGTATTCCTCAGTTGAAAGA+AGG | - | chr5_3:20261776-20261795 | None:intergenic | 35.0% | |
| ! | TGGTTTATCTTCTGGAAGAA+TGG | - | chr5_3:20261831-20261850 | None:intergenic | 35.0% |
| GCAGAGAATGAGTTTGATTA+AGG | - | chr5_3:20261883-20261902 | None:intergenic | 35.0% | |
| ! | AGAACTTTTAGCATTTCACG+AGG | - | chr5_3:20261909-20261928 | None:intergenic | 35.0% |
| CTTTACAGATCTCCATGAAA+TGG | + | chr5_3:20261961-20261980 | Msa0804400:intron | 35.0% | |
| GTTTATGATCTACCATGATG+AGG | + | chr5_3:20262013-20262032 | Msa0804400:intron | 35.0% | |
| TATTTGTCAGATCCTCATCA+TGG | - | chr5_3:20262028-20262047 | None:intergenic | 35.0% | |
| ! | CTTAGAGGTACAATGGATAT+GGG | - | chr5_3:20262106-20262125 | None:intergenic | 35.0% |
| GTATCATATCTCAGTGCAAT+AGG | - | chr5_3:20262243-20262262 | None:intergenic | 35.0% | |
| TTATCCATTGTCTACTCCAA+TGG | - | chr5_3:20262340-20262359 | None:intergenic | 35.0% | |
| AAATTGAGCACGTAAAAGGT+GGG | - | chr5_3:20262425-20262444 | None:intergenic | 35.0% | |
| !! | GGAAAGACAAAGTTTTGTCT+TGG | - | chr5_3:20262453-20262472 | None:intergenic | 35.0% |
| CATAACAGTACATGGACAAA+TGG | + | chr5_3:20262599-20262618 | Msa0804400:intron | 35.0% | |
| ! | AGTGAATATTTGTTGAGGGA+AGG | - | chr5_3:20262639-20262658 | None:intergenic | 35.0% |
| ! | CCTCAGTGAATATTTGTTGA+GGG | - | chr5_3:20262643-20262662 | None:intergenic | 35.0% |
| AGCAAATAGTTCAAGAACTC+AGG | - | chr5_3:20262736-20262755 | None:intergenic | 35.0% | |
| GTTCTTGAACTATTTGCTTC+AGG | + | chr5_3:20262738-20262757 | Msa0804400:intron | 35.0% | |
| TCAGGCAAATTAAATCCTTC+AGG | + | chr5_3:20262756-20262775 | Msa0804400:intron | 35.0% | |
| CAGGCAAATTAAATCCTTCA+GGG | + | chr5_3:20262757-20262776 | Msa0804400:intron | 35.0% | |
| !! | TTAGCCTTATAGCTCATGAA+GGG | - | chr5_3:20262857-20262876 | None:intergenic | 35.0% |
| !! | ATTAGCCTTATAGCTCATGA+AGG | - | chr5_3:20262858-20262877 | None:intergenic | 35.0% |
| CATGAGCTATAAGGCTAATT+AGG | + | chr5_3:20262859-20262878 | Msa0804400:intron | 35.0% | |
| CATCAACTTACATCAACTAC+AGG | + | chr5_3:20262898-20262917 | Msa0804400:intron | 35.0% | |
| ! | CAAAATCAATTTCGGGTCTT+TGG | + | chr5_3:20262935-20262954 | Msa0804400:intron | 35.0% |
| AAGTTGCAAGATACAAAGCA+AGG | - | chr5_3:20262981-20263000 | None:intergenic | 35.0% | |
| GAAAATTGGCCAAAATGGAA+AGG | - | chr5_3:20263131-20263150 | None:intergenic | 35.0% | |
| AAAGCGAAAATTGGCCAAAA+TGG | - | chr5_3:20263136-20263155 | None:intergenic | 35.0% | |
| ! | GAATGTGATACATGATAACG+AGG | - | chr5_3:20263192-20263211 | None:intergenic | 35.0% |
| !! | CATCAACGTTGATTTCATGT+CGG | + | chr5_3:20263237-20263256 | Msa0804400:intron | 35.0% |
| ATGTCACTACTGAAATCCAA+TGG | - | chr5_3:20263265-20263284 | None:intergenic | 35.0% | |
| ! | ACTGAGATCTCTTCATTTTC+GGG | + | chr5_3:20263290-20263309 | Msa0804400:intron | 35.0% |
| !! | TCTTCATTTTCGGGAATTTC+AGG | + | chr5_3:20263299-20263318 | Msa0804400:intron | 35.0% |
| ! | TAAGCTCCTTTTCTTATTCG+AGG | + | chr5_3:20263413-20263432 | Msa0804400:intron | 35.0% |
| AACGAAATAGATATCCCTGT+AGG | - | chr5_3:20263522-20263541 | None:intergenic | 35.0% | |
| ACAGGGATATCTATTTCGTT+TGG | + | chr5_3:20263522-20263541 | Msa0804400:intron | 35.0% | |
| !! | TTAGTTTTCCCAATACTAGG+GGG | - | chr5_3:20263683-20263702 | None:intergenic | 35.0% |
| !!! | GTTAGTTTTCCCAATACTAG+GGG | - | chr5_3:20263684-20263703 | None:intergenic | 35.0% |
| !!! | GGTTAGTTTTCCCAATACTA+GGG | - | chr5_3:20263685-20263704 | None:intergenic | 35.0% |
| !! | GTAGGTTGATTATCGATTGA+TGG | - | chr5_3:20263707-20263726 | None:intergenic | 35.0% |
| TCAATCGATAATCAACCTAC+TGG | + | chr5_3:20263707-20263726 | Msa0804400:intron | 35.0% | |
| CAATCGATAATCAACCTACT+GGG | + | chr5_3:20263708-20263727 | Msa0804400:intron | 35.0% | |
| CGAATAATCTCACAAACTTC+AGG | + | chr5_3:20264248-20264267 | Msa0804400:intron | 35.0% | |
| TCTAGATGGCTTGAATTACA+AGG | - | chr5_3:20265159-20265178 | None:intergenic | 35.0% | |
| CTAAAGGAATTGTATGACCT+TGG | + | chr5_3:20265334-20265353 | Msa0804400:intron | 35.0% | |
| !! | TTCACTCATTTTGCTACTTC+AGG | + | chr5_3:20265548-20265567 | Msa0804400:intron | 35.0% |
| ATTCCTTATGTAGTCCTTCA+GGG | + | chr5_3:20265824-20265843 | Msa0804400:intron | 35.0% | |
| !! | ATTATTGAAAGCATCCCTGA+AGG | - | chr5_3:20265841-20265860 | None:intergenic | 35.0% |
| CGATCCAATCAGTTAATTGT+AGG | + | chr5_3:20266150-20266169 | Msa0804400:intron | 35.0% | |
| GGATCCTACAATTAACTGAT+TGG | - | chr5_3:20266157-20266176 | None:intergenic | 35.0% | |
| GTTAATTGTAGGATCCTTCT+AGG | + | chr5_3:20266161-20266180 | Msa0804400:intron | 35.0% | |
| CGAATTCTTCATGAATTCGT+AGG | + | chr5_3:20266196-20266215 | Msa0804400:intron | 35.0% | |
| GTTACTACTCTTGCACATTA+AGG | + | chr5_3:20266492-20266511 | Msa0804400:intron | 35.0% | |
| ATTCATCTGTACAATCCTTC+AGG | + | chr5_3:20266713-20266732 | Msa0804400:intron | 35.0% | |
| TTCATCTGTACAATCCTTCA+GGG | + | chr5_3:20266714-20266733 | Msa0804400:intron | 35.0% | |
| !! | GTGTTTTTAAGCAATCCTTC+AGG | + | chr5_3:20266769-20266788 | Msa0804400:intron | 35.0% |
| CCGAAGAACTATATTCAGAA+AGG | - | chr5_3:20266941-20266960 | None:intergenic | 35.0% | |
| AAACATTCATGCATCCATGA+AGG | - | chr5_3:20267001-20267020 | None:intergenic | 35.0% | |
| !! | AGGCATTGATTCCAAATTGA+TGG | + | chr5_3:20267079-20267098 | Msa0804400:intron | 35.0% |
| GGCTATACTACTAGATCATT+GGG | - | chr5_3:20261294-20261313 | None:intergenic | 35.0% | |
| GTGGATGTCCAAATAACAAA+TGG | - | chr5_3:20261324-20261343 | None:intergenic | 35.0% | |
| ! | TGAAAAGAAGAGTACAGTGA+AGG | - | chr5_3:20267498-20267517 | None:intergenic | 35.0% |
| TTTCATATTCAGTTGCACGA+AGG | - | chr5_3:20267792-20267811 | None:intergenic | 35.0% | |
| TCGTCATTATCATGATCCAA+TGG | - | chr5_3:20267823-20267842 | None:intergenic | 35.0% | |
| CAAAACACAACCACAGAAGA+TGG | - | chr5_3:20258277-20258296 | None:intergenic | 40.0% | |
| TCCAGACAACTCTATGTTGT+GGG | - | chr5_3:20258605-20258624 | None:intergenic | 40.0% | |
| TTCCAGACAACTCTATGTTG+TGG | - | chr5_3:20258606-20258625 | None:intergenic | 40.0% | |
| TACCATTGCCCATGTTTCAA+AGG | + | chr5_3:20258638-20258657 | Msa0804400:CDS | 40.0% | |
| AAGGACAACTCTATGTTGTG+TGG | + | chr5_3:20258703-20258722 | Msa0804400:CDS | 40.0% | |
| AGGACAACTCTATGTTGTGT+GGG | + | chr5_3:20258704-20258723 | Msa0804400:CDS | 40.0% | |
| !!! | GAGGTTTTGGTTGTTGATGT+TGG | + | chr5_3:20258791-20258810 | Msa0804400:intron | 40.0% |
| TTTGGTTGTTGATGTTGGAG+TGG | + | chr5_3:20258796-20258815 | Msa0804400:intron | 40.0% | |
| GGTGGTGTTTATAGTGATGT+TGG | + | chr5_3:20258820-20258839 | Msa0804400:intron | 40.0% | |
| TTATAGTGATGTTGGAGCAG+TGG | + | chr5_3:20258828-20258847 | Msa0804400:intron | 40.0% | |
| ! | TCCACGATCTGTTTTCTTGT+TGG | + | chr5_3:20258924-20258943 | Msa0804400:intron | 40.0% |
| ACCAACAAGAAAACAGATCG+TGG | - | chr5_3:20258928-20258947 | None:intergenic | 40.0% | |
| TTCCTAAGTCAGTGAAAAGG+TGG | - | chr5_3:20259017-20259036 | None:intergenic | 40.0% | |
| ! | TTTTGTTCTGCTGGTATGTG+GGG | + | chr5_3:20259205-20259224 | Msa0804400:intron | 40.0% |
| TTAGGTGTTCCGCCTATATA+TGG | + | chr5_3:20259358-20259377 | Msa0804400:intron | 40.0% | |
| CAAAAGACGCCATATATAGG+CGG | - | chr5_3:20259370-20259389 | None:intergenic | 40.0% | |
| !! | TCAATTAAGGTGGGTTGAGT+TGG | + | chr5_3:20259734-20259753 | Msa0804400:intron | 40.0% |
| ! | TATGAACATGGCTAGTCCAA+AGG | + | chr5_3:20259840-20259859 | Msa0804400:intron | 40.0% |
| ! | ATGAACATGGCTAGTCCAAA+GGG | + | chr5_3:20259841-20259860 | Msa0804400:intron | 40.0% |
| ! | TAGTGGACCCATTTAGTTGT+AGG | + | chr5_3:20259960-20259979 | Msa0804400:intron | 40.0% |
| AGTGGGTCCTACAACTAAAT+GGG | - | chr5_3:20259970-20259989 | None:intergenic | 40.0% | |
| ! | TAGTGGGTCCTACAACTAAA+TGG | - | chr5_3:20259971-20259990 | None:intergenic | 40.0% |
| ATGATCTTAACCCTGACAAG+TGG | + | chr5_3:20260268-20260287 | Msa0804400:intron | 40.0% | |
| TGATCTTAACCCTGACAAGT+GGG | + | chr5_3:20260269-20260288 | Msa0804400:intron | 40.0% | |
| !!! | TGCCGTTTTATACCATGACA+TGG | - | chr5_3:20260545-20260564 | None:intergenic | 40.0% |
| ATATCAAAGAGGGGTGACTT+AGG | - | chr5_3:20260889-20260908 | None:intergenic | 40.0% | |
| !!! | TTTATTTTTTGGTGGTGGCC+GGG | + | chr5_3:20260943-20260962 | Msa0804400:intron | 40.0% |
| CATAATATATGGAAGGTCCG+GGG | - | chr5_3:20260976-20260995 | None:intergenic | 40.0% | |
| GCATAATATATGGAAGGTCC+GGG | - | chr5_3:20260977-20260996 | None:intergenic | 40.0% | |
| CGACGACTAGGGTTTAAAAA+AGG | + | chr5_3:20261031-20261050 | Msa0804400:intron | 40.0% | |
| TTAATGAGGCATATCCTCGA+TGG | - | chr5_3:20261379-20261398 | None:intergenic | 40.0% | |
| ! | TCCTGGTAAGGTTTTTAACG+AGG | - | chr5_3:20261482-20261501 | None:intergenic | 40.0% |
| ! | TTTGTCCTATTGGGTTTTCC+TGG | - | chr5_3:20261499-20261518 | None:intergenic | 40.0% |
| AACCCAATAGGACAAAACCT+CGG | + | chr5_3:20261503-20261522 | Msa0804400:intron | 40.0% | |
| ! | CACCATTCTTCTGAAGATCA+CGG | + | chr5_3:20261699-20261718 | Msa0804400:intron | 40.0% |
| ! | ACCATTCTTCTGAAGATCAC+GGG | + | chr5_3:20261700-20261719 | Msa0804400:intron | 40.0% |
| GTGGAGATACAACCATTTCA+TGG | - | chr5_3:20261976-20261995 | None:intergenic | 40.0% | |
| ! | CCTTAGAGGTACAATGGATA+TGG | - | chr5_3:20262107-20262126 | None:intergenic | 40.0% |
| CCATATCCATTGTACCTCTA+AGG | + | chr5_3:20262104-20262123 | Msa0804400:intron | 40.0% | |
| ! | TCGTTACCTTAGAGGTACAA+TGG | - | chr5_3:20262113-20262132 | None:intergenic | 40.0% |
| CATGTACTTCGTTACCTTAG+AGG | - | chr5_3:20262121-20262140 | None:intergenic | 40.0% | |
| GCACTGAGATATGATACTTC+AGG | + | chr5_3:20262246-20262265 | Msa0804400:intron | 40.0% | |
| GAAGAAGGTGAAGAACTACT+TGG | - | chr5_3:20262273-20262292 | None:intergenic | 40.0% | |
| TCCAAGGATCTAACAACCAT+TGG | + | chr5_3:20262321-20262340 | Msa0804400:intron | 40.0% | |
| TCCAATGGTTGTTAGATCCT+TGG | - | chr5_3:20262325-20262344 | None:intergenic | 40.0% | |
| ACAACCATTGGAGTAGACAA+TGG | + | chr5_3:20262333-20262352 | Msa0804400:intron | 40.0% | |
| CAAATTGAGCACGTAAAAGG+TGG | - | chr5_3:20262426-20262445 | None:intergenic | 40.0% | |
| GAGTTCGAGATGAAAGACTT+AGG | - | chr5_3:20262474-20262493 | None:intergenic | 40.0% | |
| CCCTCAACAAATATTCACTG+AGG | + | chr5_3:20262640-20262659 | Msa0804400:intron | 40.0% | |
| ! | GCCTCAGTGAATATTTGTTG+AGG | - | chr5_3:20262644-20262663 | None:intergenic | 40.0% |
| TAAAACAATCAGGACGCATG+TGG | - | chr5_3:20262674-20262693 | None:intergenic | 40.0% | |
| ATTGACATGAAACTCCCTGA+AGG | - | chr5_3:20262774-20262793 | None:intergenic | 40.0% | |
| ATCAAGTGAGCCATACAAGT+AGG | + | chr5_3:20262800-20262819 | Msa0804400:intron | 40.0% | |
| ATAACGAGGATCAAGAACCA+AGG | - | chr5_3:20263178-20263197 | None:intergenic | 40.0% | |
| !! | TGATTTCATGTCGGTTCCAT+TGG | + | chr5_3:20263246-20263265 | Msa0804400:intron | 40.0% |
| AGTTCCAGAAGAAACTGATC+AGG | - | chr5_3:20263327-20263346 | None:intergenic | 40.0% | |
| TTGAAGCATGGTAGACCAAT+CGG | - | chr5_3:20263465-20263484 | None:intergenic | 40.0% | |
| TCTCAACTATGCTTGAAGCA+TGG | - | chr5_3:20263477-20263496 | None:intergenic | 40.0% | |
| TTATCATCTCCCCCTAGTAT+TGG | + | chr5_3:20263671-20263690 | Msa0804400:intron | 40.0% | |
| TATCATCTCCCCCTAGTATT+GGG | + | chr5_3:20263672-20263691 | Msa0804400:intron | 40.0% | |
| !!! | GGGTTAGTTTTCCCAATACT+AGG | - | chr5_3:20263686-20263705 | None:intergenic | 40.0% |
| ! | CAACTTGTTTACAACCCAGT+AGG | - | chr5_3:20263725-20263744 | None:intergenic | 40.0% |
| ACCAATGATGAATTAGAGGG+AGG | + | chr5_3:20263902-20263921 | Msa0804400:intron | 40.0% | |
| TCCTCCCTCTAATTCATCAT+TGG | - | chr5_3:20263906-20263925 | None:intergenic | 40.0% | |
| ! | AAGTTTGTCGTTGGCTATAC+CGG | - | chr5_3:20264519-20264538 | None:intergenic | 40.0% |
| ! | AATCATTTTGAGCGTCCTTC+AGG | + | chr5_3:20264641-20264660 | Msa0804400:intron | 40.0% |
| ! | ATCATTTTGAGCGTCCTTCA+GGG | + | chr5_3:20264642-20264661 | Msa0804400:intron | 40.0% |
| !!! | ACCGTTTTTTACTGCCCATA+AGG | + | chr5_3:20265731-20265750 | Msa0804400:intron | 40.0% |
| CCCTTATGGGCAGTAAAAAA+CGG | - | chr5_3:20265735-20265754 | None:intergenic | 40.0% | |
| !!! | CCGTTTTTTACTGCCCATAA+GGG | + | chr5_3:20265732-20265751 | Msa0804400:intron | 40.0% |
| CATTCCTTATGTAGTCCTTC+AGG | + | chr5_3:20265823-20265842 | Msa0804400:intron | 40.0% | |
| CGGTAATGATACATCCTAGA+AGG | - | chr5_3:20266178-20266197 | None:intergenic | 40.0% | |
| GCAACACCTTTGAATTCATC+AGG | + | chr5_3:20266795-20266814 | Msa0804400:intron | 40.0% | |
| GGGCTATACTACTAGATCAT+TGG | - | chr5_3:20261295-20261314 | None:intergenic | 40.0% | |
| ATGGCTTCAGAACTGAAGTT+AGG | - | chr5_3:20267446-20267465 | None:intergenic | 40.0% | |
| AACGACTGAACCATCTTCTG+TGG | + | chr5_3:20258264-20258283 | Msa0804400:intron | 45.0% | |
| ACCCACAACATAGAGTTGTC+TGG | + | chr5_3:20258601-20258620 | Msa0804400:CDS | 45.0% | |
| !! | CTCCTTTGAAACATGGGCAA+TGG | - | chr5_3:20258643-20258662 | None:intergenic | 45.0% |
| ! | ATGTTGGAGCAGTGGTAATG+CGG | + | chr5_3:20258836-20258855 | Msa0804400:intron | 45.0% |
| !! | GGTTTGTGGTTTGATTTGGC+TGG | + | chr5_3:20258945-20258964 | Msa0804400:intron | 45.0% |
| !! | TGATTTGGCTGGTTCGACTT+TGG | + | chr5_3:20258956-20258975 | Msa0804400:intron | 45.0% |
| TCAGTGAAAAGGTGGAGTAG+TGG | - | chr5_3:20259009-20259028 | None:intergenic | 45.0% | |
| !!! | CTCCACCTTTTCACTGACTT+AGG | + | chr5_3:20259012-20259031 | Msa0804400:intron | 45.0% |
| TACCTCAAAGCAAAAGCGAG+TGG | - | chr5_3:20259063-20259082 | None:intergenic | 45.0% | |
| !!! | ACTCGCTTTTGCTTTGAGGT+AGG | + | chr5_3:20259062-20259081 | Msa0804400:intron | 45.0% |
| TTTGTTCTGCTGGTATGTGG+GGG | + | chr5_3:20259206-20259225 | Msa0804400:intron | 45.0% | |
| TGGTATGTGGGGGTTTATCT+AGG | + | chr5_3:20259216-20259235 | Msa0804400:intron | 45.0% | |
| AATAGACTTGTGCTTCGCAC+GGG | - | chr5_3:20259664-20259683 | None:intergenic | 45.0% | |
| CAATAGACTTGTGCTTCGCA+CGG | - | chr5_3:20259665-20259684 | None:intergenic | 45.0% | |
| ! | TAGGCGTGCTGTTATGAACA+TGG | + | chr5_3:20259828-20259847 | Msa0804400:intron | 45.0% |
| ! | TGAACATGGCTAGTCCAAAG+GGG | + | chr5_3:20259842-20259861 | Msa0804400:intron | 45.0% |
| TAGTTGTAGGACCCACTACA+TGG | + | chr5_3:20259973-20259992 | Msa0804400:intron | 45.0% | |
| GGTGGGACCCATTTAATGAT+AGG | + | chr5_3:20260175-20260194 | Msa0804400:intron | 45.0% | |
| GATCTTAACCCTGACAAGTG+GGG | + | chr5_3:20260270-20260289 | Msa0804400:intron | 45.0% | |
| ! | AAGTGGGGCTTTGTCCAAAA+GGG | + | chr5_3:20260285-20260304 | Msa0804400:intron | 45.0% |
| GAAGTTCAAGACAGCTTCCT+CGG | - | chr5_3:20260318-20260337 | None:intergenic | 45.0% | |
| CACTCATAGCATCCATGTCA+TGG | + | chr5_3:20260530-20260549 | Msa0804400:intron | 45.0% | |
| !!! | TTATTTTTTGGTGGTGGCCG+GGG | + | chr5_3:20260944-20260963 | Msa0804400:intron | 45.0% |
| TATCCTCGATGGACATCCAA+GGG | - | chr5_3:20261368-20261387 | None:intergenic | 45.0% | |
| ATATCCTCGATGGACATCCA+AGG | - | chr5_3:20261369-20261388 | None:intergenic | 45.0% | |
| GCCTCGTTAAAAACCTTACC+AGG | + | chr5_3:20261478-20261497 | Msa0804400:intron | 45.0% | |
| ! | CCTATTGGGTTTTCCTGGTA+AGG | - | chr5_3:20261494-20261513 | None:intergenic | 45.0% |
| CCTTACCAGGAAAACCCAAT+AGG | + | chr5_3:20261491-20261510 | Msa0804400:intron | 45.0% | |
| !! | CACCGAGGTTTTGTCCTATT+GGG | - | chr5_3:20261508-20261527 | None:intergenic | 45.0% |
| !! | TCACCGAGGTTTTGTCCTAT+TGG | - | chr5_3:20261509-20261528 | None:intergenic | 45.0% |
| ATAGGACAAAACCTCGGTGA+AGG | + | chr5_3:20261509-20261528 | Msa0804400:intron | 45.0% | |
| !!! | CACTCTTTTTTCCTTCACCG+AGG | - | chr5_3:20261523-20261542 | None:intergenic | 45.0% |
| ACCCGTGATCTTCAGAAGAA+TGG | - | chr5_3:20261704-20261723 | None:intergenic | 45.0% | |
| AGTTCTTCACCTTCTTCTCG+AGG | + | chr5_3:20262276-20262295 | Msa0804400:intron | 45.0% | |
| AGGATCATTCTCCACATCCA+AGG | + | chr5_3:20262305-20262324 | Msa0804400:intron | 45.0% | |
| GGTTGTTAGATCCTTGGATG+TGG | - | chr5_3:20262319-20262338 | None:intergenic | 45.0% | |
| ATGGCTTATGGAAGCTCTTC+AGG | + | chr5_3:20262510-20262529 | Msa0804400:intron | 45.0% | |
| GTCGTTACAGCCTACTTGTA+TGG | - | chr5_3:20262813-20262832 | None:intergenic | 45.0% | |
| AGGGCTCAATTTGCACATGT+TGG | - | chr5_3:20262838-20262857 | None:intergenic | 45.0% | |
| TGAGCCCTTCATGAGCTATA+AGG | + | chr5_3:20262850-20262869 | Msa0804400:intron | 45.0% | |
| !! | AAAGCAAGGCTTGTTGCTCA+AGG | - | chr5_3:20262967-20262986 | None:intergenic | 45.0% |
| GTGCGAAAACGCAATGAGAA+TGG | - | chr5_3:20263006-20263025 | None:intergenic | 45.0% | |
| ! | CCTAAAGGCATGAAGCAAGT+TGG | - | chr5_3:20263045-20263064 | None:intergenic | 45.0% |
| ! | CCAACTTGCTTCATGCCTTT+AGG | + | chr5_3:20263042-20263061 | Msa0804400:intron | 45.0% |
| CCTGTTGTCTGAACACCTAA+AGG | - | chr5_3:20263060-20263079 | None:intergenic | 45.0% | |
| CCTTTAGGTGTTCAGACAAC+AGG | + | chr5_3:20263057-20263076 | Msa0804400:intron | 45.0% | |
| GGTACCTGATCAGTTTCTTC+TGG | + | chr5_3:20263320-20263339 | Msa0804400:intron | 45.0% | |
| ! | TGAATCTGGGATAACCCAAC+CGG | + | chr5_3:20264497-20264516 | Msa0804400:intron | 45.0% |
| ! | ACTTCAGGAGCATATTCGAG+TGG | + | chr5_3:20265563-20265582 | Msa0804400:intron | 45.0% |
| CATCCCTGAAGGACTACATA+AGG | - | chr5_3:20265830-20265849 | None:intergenic | 45.0% | |
| CAACAAAGATGCATCCCTGA+AGG | - | chr5_3:20266731-20266750 | None:intergenic | 45.0% | |
| ! | CAAAGGTTTTGCATCCCTGA+AGG | - | chr5_3:20266856-20266875 | None:intergenic | 45.0% |
| AGAAAGGAACGCATCCTTGA+AGG | - | chr5_3:20266925-20266944 | None:intergenic | 45.0% | |
| TAACGCTAATGCATCACCAC+GGG | - | chr5_3:20267615-20267634 | None:intergenic | 45.0% | |
| GTAACGCTAATGCATCACCA+CGG | - | chr5_3:20267616-20267635 | None:intergenic | 45.0% | |
| !! | AAGTAAAATATAAATAATAA+TGG | + | chr5_3:20260154-20260173 | Msa0804400:intron | 5.0% |
| !!! | AATTTATAATATTTTTTTAG+GGG | + | chr5_3:20260373-20260392 | Msa0804400:intron | 5.0% |
| !!! | ATATATATATATATTTTCTT+AGG | - | chr5_3:20264996-20265015 | None:intergenic | 5.0% |
| TTTCTCCTTTGTGCAGGGAG+AGG | + | chr5_3:20258772-20258791 | Msa0804400:intron | 50.0% | |
| CAAAACCTCTCCCTGCACAA+AGG | - | chr5_3:20258780-20258799 | None:intergenic | 50.0% | |
| ! | CTTTGTGCAGGGAGAGGTTT+TGG | + | chr5_3:20258778-20258797 | Msa0804400:intron | 50.0% |
| GGTTGTTGATGTTGGAGTGG+TGG | + | chr5_3:20258799-20258818 | Msa0804400:intron | 50.0% | |
| TGTTGATGTTGGAGTGGTGG+TGG | + | chr5_3:20258802-20258821 | Msa0804400:intron | 50.0% | |
| ! | TGTTGGAGCAGTGGTAATGC+GGG | + | chr5_3:20258837-20258856 | Msa0804400:intron | 50.0% |
| ! | GATTAAGGTGTCTTCCCCAG+CGG | + | chr5_3:20259116-20259135 | Msa0804400:intron | 50.0% |
| ! | CAAGTGGGGCTTTGTCCAAA+AGG | + | chr5_3:20260284-20260303 | Msa0804400:intron | 50.0% |
| ! | AGTGGGGCTTTGTCCAAAAG+GGG | + | chr5_3:20260286-20260305 | Msa0804400:intron | 50.0% |
| CATTGTCGTCTAGCACGACT+TGG | - | chr5_3:20260762-20260781 | None:intergenic | 50.0% | |
| ATCCTCGATGGACATCCAAG+GGG | - | chr5_3:20261367-20261386 | None:intergenic | 50.0% | |
| CGAGGCAGTTCACACTCAAA+AGG | - | chr5_3:20261464-20261483 | None:intergenic | 50.0% | |
| CCTTTCAGACCTCGAGAAGA+AGG | - | chr5_3:20262288-20262307 | None:intergenic | 50.0% | |
| CCTTCTTCTCGAGGTCTGAA+AGG | + | chr5_3:20262285-20262304 | Msa0804400:intron | 50.0% | |
| ! | TGTCGTTGGCTATACCGGTT+GGG | - | chr5_3:20264514-20264533 | None:intergenic | 50.0% |
| ! | TTGTCGTTGGCTATACCGGT+TGG | - | chr5_3:20264515-20264534 | None:intergenic | 50.0% |
| !! | CAAAGGTGTTGCATCCCTGA+AGG | - | chr5_3:20266787-20266806 | None:intergenic | 50.0% |
| GTGCGCTTCTTCATCATGCA+GGG | - | chr5_3:20267593-20267612 | None:intergenic | 50.0% | |
| ! | GTTGGAGCAGTGGTAATGCG+GGG | + | chr5_3:20258838-20258857 | Msa0804400:intron | 55.0% |
| !! | GGCCACTCGCTTTTGCTTTG+AGG | + | chr5_3:20259058-20259077 | Msa0804400:intron | 55.0% |
| CGGGCTGATCGTTCAAACGT+GGG | - | chr5_3:20259645-20259664 | None:intergenic | 55.0% | |
| ! | ACGGGCTGATCGTTCAAACG+TGG | - | chr5_3:20259646-20259665 | None:intergenic | 55.0% |
| ! | ACATGGCTAGTCCAAAGGGG+TGG | + | chr5_3:20259845-20259864 | Msa0804400:intron | 55.0% |
| !! | TGACTTGCTTGCCACCCCTT+TGG | - | chr5_3:20259859-20259878 | None:intergenic | 55.0% |
| GGACAAAGCCCCACTTGTCA+GGG | - | chr5_3:20260281-20260300 | None:intergenic | 55.0% | |
| TGGACAAAGCCCCACTTGTC+AGG | - | chr5_3:20260282-20260301 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+CGG | + | chr5_3:20261007-20261026 | Msa0804400:intron | 55.0% | |
| TCCTCGATGGACATCCAAGG+GGG | - | chr5_3:20261366-20261385 | None:intergenic | 55.0% | |
| CACGCGAAGACATTGGAACG+GGG | - | chr5_3:20262149-20262168 | None:intergenic | 55.0% | |
| CCACGCGAAGACATTGGAAC+GGG | - | chr5_3:20262150-20262169 | None:intergenic | 55.0% | |
| CCCACGCGAAGACATTGGAA+CGG | - | chr5_3:20262151-20262170 | None:intergenic | 55.0% | |
| CCGTTCCAATGTCTTCGCGT+GGG | + | chr5_3:20262148-20262167 | Msa0804400:intron | 55.0% | |
| CTTCACCCACGCGAAGACAT+TGG | - | chr5_3:20262156-20262175 | None:intergenic | 55.0% | |
| GGTGCGCTTCTTCATCATGC+AGG | - | chr5_3:20267594-20267613 | None:intergenic | 55.0% | |
| ! | ATGATGAAGAAGCGCACCCG+TGG | + | chr5_3:20267596-20267615 | Msa0804400:intron | 55.0% |
| CCTCTACTCTCGAACCGCTG+GGG | - | chr5_3:20259133-20259152 | None:intergenic | 60.0% | |
| CCCTCTACTCTCGAACCGCT+GGG | - | chr5_3:20259134-20259153 | None:intergenic | 60.0% | |
| CCCAGCGGTTCGAGAGTAGA+GGG | + | chr5_3:20259131-20259150 | Msa0804400:intron | 60.0% | |
| CCAGCGGTTCGAGAGTAGAG+GGG | + | chr5_3:20259132-20259151 | Msa0804400:intron | 60.0% | |
| ! | GAGTCTGATGCGCCGATCAC+TGG | + | chr5_3:20259176-20259195 | Msa0804400:intron | 60.0% |
| ! | GGGGCTTTGTCCAAAAGGGG+TGG | + | chr5_3:20260289-20260308 | Msa0804400:intron | 60.0% |
| TCCAAAAGGGGTGGCAACCG+AGG | + | chr5_3:20260298-20260317 | Msa0804400:intron | 60.0% | |
| ! | TCCTCGGTTGCCACCCCTTT+TGG | - | chr5_3:20260302-20260321 | None:intergenic | 60.0% |
| CCGCGTGAGCTTAGCTCAGT+TGG | - | chr5_3:20261010-20261029 | None:intergenic | 60.0% | |
| TCCCCCTTGGATGTCCATCG+AGG | + | chr5_3:20261362-20261381 | Msa0804400:intron | 60.0% | |
| CCCGTTCCAATGTCTTCGCG+TGG | + | chr5_3:20262147-20262166 | Msa0804400:intron | 60.0% | |
| GCGGGGAGTTATGCTGCCGT+TGG | + | chr5_3:20258855-20258874 | Msa0804400:intron | 65.0% | |
| CCCCAGCGGTTCGAGAGTAG+AGG | + | chr5_3:20259130-20259149 | Msa0804400:intron | 65.0% | |
| CCCCTCTACTCTCGAACCGC+TGG | - | chr5_3:20259135-20259154 | None:intergenic | 65.0% | |
| AAGGTCCGGGGTTCGAACCC+CGG | - | chr5_3:20260964-20260983 | None:intergenic | 65.0% | |
| AGCTCACGCGGACGACGACT+AGG | + | chr5_3:20261019-20261038 | Msa0804400:intron | 65.0% | |
| GCTCACGCGGACGACGACTA+GGG | + | chr5_3:20261020-20261039 | Msa0804400:intron | 65.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | + | chr5_3:20260956-20260975 | Msa0804400:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20258195 | 20267910 | 20258195 | ID=Msa0804400;Name=Msa0804400 |
| chr5_3 | mRNA | 20258195 | 20267910 | 20258195 | ID=Msa0804400-mRNA-1;Parent=Msa0804400;Name=Msa0804400-mRNA-1;_AED=0.65;_eAED=0.72;_QI=0|0|0|0.2|0.25|0.2|5|0|158 |
| chr5_3 | exon | 20258195 | 20258199 | 20258195 | ID=Msa0804400-mRNA-1:exon:8239;Parent=Msa0804400-mRNA-1 |
| chr5_3 | exon | 20258535 | 20258540 | 20258535 | ID=Msa0804400-mRNA-1:exon:8240;Parent=Msa0804400-mRNA-1 |
| chr5_3 | exon | 20258572 | 20258725 | 20258572 | ID=Msa0804400-mRNA-1:exon:8241;Parent=Msa0804400-mRNA-1 |
| chr5_3 | exon | 20258788 | 20258793 | 20258788 | ID=Msa0804400-mRNA-1:exon:8242;Parent=Msa0804400-mRNA-1 |
| chr5_3 | exon | 20267605 | 20267910 | 20267605 | ID=Msa0804400-mRNA-1:exon:8243;Parent=Msa0804400-mRNA-1 |
| chr5_3 | CDS | 20258195 | 20258199 | 20258195 | ID=Msa0804400-mRNA-1:cds;Parent=Msa0804400-mRNA-1 |
| chr5_3 | CDS | 20258535 | 20258540 | 20258535 | ID=Msa0804400-mRNA-1:cds;Parent=Msa0804400-mRNA-1 |
| chr5_3 | CDS | 20258572 | 20258725 | 20258572 | ID=Msa0804400-mRNA-1:cds;Parent=Msa0804400-mRNA-1 |
| chr5_3 | CDS | 20258788 | 20258793 | 20258788 | ID=Msa0804400-mRNA-1:cds;Parent=Msa0804400-mRNA-1 |
| chr5_3 | CDS | 20267605 | 20267910 | 20267605 | ID=Msa0804400-mRNA-1:cds;Parent=Msa0804400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
