Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804670 | RHN54944.1 | 94.231 | 208 | 11 | 1 | 1 | 208 | 1 | 207 | 3.89e-139 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804670 | sp|P0CB25|BH131_ARATH | 48.795 | 166 | 72 | 4 | 20 | 184 | 69 | 222 | 1.36e-44 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804670 | A0A396HSP5 | 94.231 | 208 | 11 | 1 | 1 | 208 | 1 | 207 | 1.86e-139 | 397 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0804670 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804670 | MtrunA17_Chr5g0412371 | 94.231 | 208 | 11 | 1 | 1 | 208 | 1 | 207 | 3.57e-143 | 397 |
| Msa0804670 | MtrunA17_Chr5g0427361 | 40.571 | 175 | 82 | 3 | 32 | 184 | 23 | 197 | 2.33e-26 | 101 |
| Msa0804670 | MtrunA17_Chr7g0255961 | 33.971 | 209 | 116 | 6 | 7 | 200 | 31 | 232 | 6.49e-26 | 100 |
| Msa0804670 | MtrunA17_Chr1g0198801 | 37.126 | 167 | 87 | 3 | 43 | 198 | 156 | 315 | 6.67e-25 | 99.8 |
| Msa0804670 | MtrunA17_Chr3g0113721 | 35.673 | 171 | 86 | 4 | 45 | 198 | 39 | 202 | 1.75e-23 | 93.6 |
| Msa0804670 | MtrunA17_Chr2g0325521 | 39.583 | 144 | 72 | 3 | 40 | 177 | 54 | 188 | 2.65e-20 | 85.5 |
| Msa0804670 | MtrunA17_Chr4g0041051 | 35.256 | 156 | 90 | 2 | 34 | 185 | 57 | 205 | 9.07e-18 | 79.0 |
| Msa0804670 | MtrunA17_Chr4g0045901 | 36.364 | 143 | 78 | 4 | 39 | 175 | 68 | 203 | 1.78e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804670 | AT4G38070.1 | 48.795 | 166 | 72 | 4 | 20 | 184 | 69 | 222 | 1.38e-45 | 152 |
| Msa0804670 | AT3G25710.1 | 41.611 | 149 | 77 | 3 | 32 | 177 | 119 | 260 | 1.08e-25 | 102 |
| Msa0804670 | AT1G68810.1 | 42.012 | 169 | 78 | 3 | 43 | 198 | 172 | 333 | 7.44e-25 | 100 |
| Msa0804670 | AT3G56770.1 | 33.333 | 174 | 93 | 6 | 40 | 200 | 39 | 202 | 2.93e-22 | 90.9 |
| Msa0804670 | AT2G40200.1 | 39.259 | 135 | 66 | 4 | 46 | 172 | 64 | 190 | 4.38e-20 | 85.5 |
| Msa0804670 | AT2G41130.1 | 35.838 | 173 | 93 | 5 | 39 | 200 | 60 | 225 | 1.65e-19 | 84.0 |
Find 45 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGCAGACAAATTGAATT+TGG | 0.253589 | 5_3:+20611384 | Msa0804670:CDS |
| TGTCTGCCCCACCAGGAAAC+TGG | 0.346018 | 5_3:-20611372 | None:intergenic |
| TTGGACCCATAACACACTTC+TGG | 0.378699 | 5_3:-20611551 | None:intergenic |
| ACACTAACTTTGATCAAGTT+GGG | 0.389149 | 5_3:-20610998 | None:intergenic |
| AGGTGTTGAAAATGAAGGTT+TGG | 0.393224 | 5_3:+20611573 | Msa0804670:CDS |
| AATGAAAGCCAAAGTTGTTA+AGG | 0.399548 | 5_3:+20611501 | Msa0804670:CDS |
| GAAGAACCAGAAGTGTGTTA+TGG | 0.408049 | 5_3:+20611545 | Msa0804670:CDS |
| CATCTCAACCTTAACAACTT+TGG | 0.408942 | 5_3:-20611509 | None:intergenic |
| AAGAACCAGAAGTGTGTTAT+GGG | 0.427563 | 5_3:+20611546 | Msa0804670:CDS |
| TCAAAGGAGATCCAGTTTCC+TGG | 0.436396 | 5_3:+20611361 | Msa0804670:CDS |
| GACACTAACTTTGATCAAGT+TGG | 0.443559 | 5_3:-20610999 | None:intergenic |
| GATGAGGCGGTATACTCAAT+AGG | 0.446628 | 5_3:+20611645 | Msa0804670:CDS |
| GGTGTTGAAAATGAAGGTTT+GGG | 0.450241 | 5_3:+20611574 | Msa0804670:CDS |
| TTCAATTTGTCTGCCCCACC+AGG | 0.456050 | 5_3:-20611379 | None:intergenic |
| TACCGCCTCATCTTAAAACT+TGG | 0.469951 | 5_3:-20611634 | None:intergenic |
| GATATAGATGACATCAATCC+TGG | 0.505784 | 5_3:-20611463 | None:intergenic |
| AGACGTAGAATGCGAATCAA+TGG | 0.510341 | 5_3:+20610947 | Msa0804670:CDS |
| AGGAAACTGGATCTCCTTTG+AGG | 0.538324 | 5_3:-20611359 | None:intergenic |
| CAAAGTTGTTAAGGTTGAGA+TGG | 0.542500 | 5_3:+20611510 | Msa0804670:CDS |
| GTCCAAGGTGTTGAAAATGA+AGG | 0.548376 | 5_3:+20611568 | Msa0804670:CDS |
| GGAAAAGTGTAATGATGAGG+AGG | 0.576454 | 5_3:+20611405 | Msa0804670:CDS |
| TTGAGTTGTGAGGATAGACC+AGG | 0.582755 | 5_3:+20611445 | Msa0804670:CDS |
| GGAGATCCAGTTTCCTGGTG+GGG | 0.584829 | 5_3:+20611366 | Msa0804670:CDS |
| GGATCTCCTTTGAGGTAGCA+TGG | 0.586127 | 5_3:-20611351 | None:intergenic |
| AGAAGTGTGTTATGGGTCCA+AGG | 0.587934 | 5_3:+20611553 | Msa0804670:CDS |
| CATGTTCGAAATTACTGTAA+CGG | 0.590992 | 5_3:+20610791 | Msa0804670:CDS |
| CACTAACTTTGATCAAGTTG+GGG | 0.594450 | 5_3:-20610997 | None:intergenic |
| GGAGACTATCAAACAAGTGA+AGG | 0.601788 | 5_3:+20611291 | Msa0804670:CDS |
| AGGAGATCCAGTTTCCTGGT+GGG | 0.605957 | 5_3:+20611365 | Msa0804670:CDS |
| GTTGAGATGGTGACAGTGGG+TGG | 0.609342 | 5_3:+20611523 | Msa0804670:CDS |
| GAAAAGTGTAATGATGAGGA+GGG | 0.610839 | 5_3:+20611406 | Msa0804670:CDS |
| TAAGGTTGAGATGGTGACAG+TGG | 0.619246 | 5_3:+20611519 | Msa0804670:CDS |
| TAACTTTGATCAAGTTGGGG+AGG | 0.625634 | 5_3:-20610994 | None:intergenic |
| GGACAAGGCATCAATACTAG+TGG | 0.628919 | 5_3:+20611270 | Msa0804670:CDS |
| TATCTCGAAGCAAAGATCAA+AGG | 0.632574 | 5_3:+20610877 | Msa0804670:CDS |
| AGATAGCCATGCTACCTCAA+AGG | 0.632769 | 5_3:+20611345 | Msa0804670:CDS |
| TATTGATTGACAGAAGGACA+AGG | 0.644249 | 5_3:+20611255 | Msa0804670:intron |
| AAGGTTGAGATGGTGACAGT+GGG | 0.645311 | 5_3:+20611520 | Msa0804670:CDS |
| AAGGAGATCCAGTTTCCTGG+TGG | 0.648546 | 5_3:+20611364 | Msa0804670:CDS |
| CTCGAAGCAAAGATCAAAGG+CGG | 0.651214 | 5_3:+20610880 | Msa0804670:CDS |
| AGTTGGGGAGGATACTGCGG+AGG | 0.655539 | 5_3:-20610982 | None:intergenic |
| TTTGGAAAAGTGTAATGATG+AGG | 0.678742 | 5_3:+20611402 | Msa0804670:CDS |
| GAAAGCTACATTGAGTTGTG+AGG | 0.689461 | 5_3:+20611435 | Msa0804670:CDS |
| TCAAGTTGGGGAGGATACTG+CGG | 0.696028 | 5_3:-20610985 | None:intergenic |
| GTTGGGGAGGATACTGCGGA+GGG | 0.717546 | 5_3:-20610981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGTTTTCATAAAGT+TGG | - | chr5_3:20611042-20611061 | None:intergenic | 15.0% |
| !!! | AAATTTTGTTTTCATAAAGT+TGG | - | chr5_3:20611042-20611061 | None:intergenic | 15.0% |
| !!! | TTATACTTTTGTGTATTACA+AGG | + | chr5_3:20611063-20611082 | Msa0804670:intron | 20.0% |
| !! | AACAAATTCTAAATTTAGCA+AGG | - | chr5_3:20611236-20611255 | None:intergenic | 20.0% |
| !!! | TTATACTTTTGTGTATTACA+AGG | + | chr5_3:20611063-20611082 | Msa0804670:intron | 20.0% |
| !! | AACAAATTCTAAATTTAGCA+AGG | - | chr5_3:20611236-20611255 | None:intergenic | 20.0% |
| ! | ACTATTATTGTAAGGAAGAA+TGG | + | chr5_3:20611113-20611132 | Msa0804670:intron | 25.0% |
| ! | AATGGTTAAATATGTTGATG+TGG | + | chr5_3:20611131-20611150 | Msa0804670:intron | 25.0% |
| ! | TAAATTTAGCAAGGTTGTTT+AGG | - | chr5_3:20611227-20611246 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTGATTGACAGA+AGG | + | chr5_3:20611249-20611268 | Msa0804670:intron | 25.0% |
| ! | ACTATTATTGTAAGGAAGAA+TGG | + | chr5_3:20611113-20611132 | Msa0804670:intron | 25.0% |
| ! | AATGGTTAAATATGTTGATG+TGG | + | chr5_3:20611131-20611150 | Msa0804670:intron | 25.0% |
| ! | TAAATTTAGCAAGGTTGTTT+AGG | - | chr5_3:20611227-20611246 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTGATTGACAGA+AGG | + | chr5_3:20611249-20611268 | Msa0804670:intron | 25.0% |
| CATGTTCGAAATTACTGTAA+CGG | + | chr5_3:20610791-20610810 | Msa0804670:CDS | 30.0% | |
| ACACTAACTTTGATCAAGTT+GGG | - | chr5_3:20611001-20611020 | None:intergenic | 30.0% | |
| ! | TTTGGAAAAGTGTAATGATG+AGG | + | chr5_3:20611402-20611421 | Msa0804670:CDS | 30.0% |
| AATGAAAGCCAAAGTTGTTA+AGG | + | chr5_3:20611501-20611520 | Msa0804670:CDS | 30.0% | |
| !!! | ATAAGCCAAGTTTTAAGATG+AGG | + | chr5_3:20611629-20611648 | Msa0804670:CDS | 30.0% |
| CATGTTCGAAATTACTGTAA+CGG | + | chr5_3:20610791-20610810 | Msa0804670:CDS | 30.0% | |
| ACACTAACTTTGATCAAGTT+GGG | - | chr5_3:20611001-20611020 | None:intergenic | 30.0% | |
| ! | TTTGGAAAAGTGTAATGATG+AGG | + | chr5_3:20611402-20611421 | Msa0804670:CDS | 30.0% |
| AATGAAAGCCAAAGTTGTTA+AGG | + | chr5_3:20611501-20611520 | Msa0804670:CDS | 30.0% | |
| !!! | ATAAGCCAAGTTTTAAGATG+AGG | + | chr5_3:20611629-20611648 | Msa0804670:CDS | 30.0% |
| TATCTCGAAGCAAAGATCAA+AGG | + | chr5_3:20610877-20610896 | Msa0804670:CDS | 35.0% | |
| ! | CACTAACTTTGATCAAGTTG+GGG | - | chr5_3:20611000-20611019 | None:intergenic | 35.0% |
| GACACTAACTTTGATCAAGT+TGG | - | chr5_3:20611002-20611021 | None:intergenic | 35.0% | |
| TCGCGATCACTATTATTGTA+AGG | + | chr5_3:20611105-20611124 | Msa0804670:intron | 35.0% | |
| ! | TATTGATTGACAGAAGGACA+AGG | + | chr5_3:20611255-20611274 | Msa0804670:intron | 35.0% |
| ! | GAAAAGTGTAATGATGAGGA+GGG | + | chr5_3:20611406-20611425 | Msa0804670:CDS | 35.0% |
| GATATAGATGACATCAATCC+TGG | - | chr5_3:20611466-20611485 | None:intergenic | 35.0% | |
| CATCTCAACCTTAACAACTT+TGG | - | chr5_3:20611512-20611531 | None:intergenic | 35.0% | |
| CAAAGTTGTTAAGGTTGAGA+TGG | + | chr5_3:20611510-20611529 | Msa0804670:CDS | 35.0% | |
| ! | AAGAACCAGAAGTGTGTTAT+GGG | + | chr5_3:20611546-20611565 | Msa0804670:CDS | 35.0% |
| ! | AACCTTCATTTTCAACACCT+TGG | - | chr5_3:20611573-20611592 | None:intergenic | 35.0% |
| !! | AGGTGTTGAAAATGAAGGTT+TGG | + | chr5_3:20611573-20611592 | Msa0804670:CDS | 35.0% |
| ! | GGTGTTGAAAATGAAGGTTT+GGG | + | chr5_3:20611574-20611593 | Msa0804670:CDS | 35.0% |
| TATCTCGAAGCAAAGATCAA+AGG | + | chr5_3:20610877-20610896 | Msa0804670:CDS | 35.0% | |
| ! | CACTAACTTTGATCAAGTTG+GGG | - | chr5_3:20611000-20611019 | None:intergenic | 35.0% |
| GACACTAACTTTGATCAAGT+TGG | - | chr5_3:20611002-20611021 | None:intergenic | 35.0% | |
| TCGCGATCACTATTATTGTA+AGG | + | chr5_3:20611105-20611124 | Msa0804670:intron | 35.0% | |
| ! | TATTGATTGACAGAAGGACA+AGG | + | chr5_3:20611255-20611274 | Msa0804670:intron | 35.0% |
| ! | GAAAAGTGTAATGATGAGGA+GGG | + | chr5_3:20611406-20611425 | Msa0804670:CDS | 35.0% |
| GATATAGATGACATCAATCC+TGG | - | chr5_3:20611466-20611485 | None:intergenic | 35.0% | |
| CATCTCAACCTTAACAACTT+TGG | - | chr5_3:20611512-20611531 | None:intergenic | 35.0% | |
| CAAAGTTGTTAAGGTTGAGA+TGG | + | chr5_3:20611510-20611529 | Msa0804670:CDS | 35.0% | |
| ! | AAGAACCAGAAGTGTGTTAT+GGG | + | chr5_3:20611546-20611565 | Msa0804670:CDS | 35.0% |
| ! | AACCTTCATTTTCAACACCT+TGG | - | chr5_3:20611573-20611592 | None:intergenic | 35.0% |
| !! | AGGTGTTGAAAATGAAGGTT+TGG | + | chr5_3:20611573-20611592 | Msa0804670:CDS | 35.0% |
| ! | GGTGTTGAAAATGAAGGTTT+GGG | + | chr5_3:20611574-20611593 | Msa0804670:CDS | 35.0% |
| AGACGTAGAATGCGAATCAA+TGG | + | chr5_3:20610947-20610966 | Msa0804670:CDS | 40.0% | |
| !! | TAACTTTGATCAAGTTGGGG+AGG | - | chr5_3:20610997-20611016 | None:intergenic | 40.0% |
| TCACGATGCAGTCTAAATCA+TGG | + | chr5_3:20611166-20611185 | Msa0804670:intron | 40.0% | |
| GGAGACTATCAAACAAGTGA+AGG | + | chr5_3:20611291-20611310 | Msa0804670:CDS | 40.0% | |
| TGGGGCAGACAAATTGAATT+TGG | + | chr5_3:20611384-20611403 | Msa0804670:CDS | 40.0% | |
| ! | GGAAAAGTGTAATGATGAGG+AGG | + | chr5_3:20611405-20611424 | Msa0804670:CDS | 40.0% |
| ! | GAAAGCTACATTGAGTTGTG+AGG | + | chr5_3:20611435-20611454 | Msa0804670:CDS | 40.0% |
| ! | GAAGAACCAGAAGTGTGTTA+TGG | + | chr5_3:20611545-20611564 | Msa0804670:CDS | 40.0% |
| !! | GTCCAAGGTGTTGAAAATGA+AGG | + | chr5_3:20611568-20611587 | Msa0804670:CDS | 40.0% |
| !!! | AGCCAAGTTTTAAGATGAGG+CGG | + | chr5_3:20611632-20611651 | Msa0804670:CDS | 40.0% |
| TACCGCCTCATCTTAAAACT+TGG | - | chr5_3:20611637-20611656 | None:intergenic | 40.0% | |
| AGACGTAGAATGCGAATCAA+TGG | + | chr5_3:20610947-20610966 | Msa0804670:CDS | 40.0% | |
| !! | TAACTTTGATCAAGTTGGGG+AGG | - | chr5_3:20610997-20611016 | None:intergenic | 40.0% |
| TCACGATGCAGTCTAAATCA+TGG | + | chr5_3:20611166-20611185 | Msa0804670:intron | 40.0% | |
| GGAGACTATCAAACAAGTGA+AGG | + | chr5_3:20611291-20611310 | Msa0804670:CDS | 40.0% | |
| TGGGGCAGACAAATTGAATT+TGG | + | chr5_3:20611384-20611403 | Msa0804670:CDS | 40.0% | |
| ! | GGAAAAGTGTAATGATGAGG+AGG | + | chr5_3:20611405-20611424 | Msa0804670:CDS | 40.0% |
| ! | GAAAGCTACATTGAGTTGTG+AGG | + | chr5_3:20611435-20611454 | Msa0804670:CDS | 40.0% |
| ! | GAAGAACCAGAAGTGTGTTA+TGG | + | chr5_3:20611545-20611564 | Msa0804670:CDS | 40.0% |
| !! | GTCCAAGGTGTTGAAAATGA+AGG | + | chr5_3:20611568-20611587 | Msa0804670:CDS | 40.0% |
| !!! | AGCCAAGTTTTAAGATGAGG+CGG | + | chr5_3:20611632-20611651 | Msa0804670:CDS | 40.0% |
| TACCGCCTCATCTTAAAACT+TGG | - | chr5_3:20611637-20611656 | None:intergenic | 40.0% | |
| CTCGAAGCAAAGATCAAAGG+CGG | + | chr5_3:20610880-20610899 | Msa0804670:CDS | 45.0% | |
| ! | GGACAAGGCATCAATACTAG+TGG | + | chr5_3:20611270-20611289 | Msa0804670:CDS | 45.0% |
| AGATAGCCATGCTACCTCAA+AGG | + | chr5_3:20611345-20611364 | Msa0804670:CDS | 45.0% | |
| AGGAAACTGGATCTCCTTTG+AGG | - | chr5_3:20611362-20611381 | None:intergenic | 45.0% | |
| TCAAAGGAGATCCAGTTTCC+TGG | + | chr5_3:20611361-20611380 | Msa0804670:CDS | 45.0% | |
| ! | TTGAGTTGTGAGGATAGACC+AGG | + | chr5_3:20611445-20611464 | Msa0804670:CDS | 45.0% |
| TAAGGTTGAGATGGTGACAG+TGG | + | chr5_3:20611519-20611538 | Msa0804670:CDS | 45.0% | |
| AAGGTTGAGATGGTGACAGT+GGG | + | chr5_3:20611520-20611539 | Msa0804670:CDS | 45.0% | |
| TTGGACCCATAACACACTTC+TGG | - | chr5_3:20611554-20611573 | None:intergenic | 45.0% | |
| ! | AGAAGTGTGTTATGGGTCCA+AGG | + | chr5_3:20611553-20611572 | Msa0804670:CDS | 45.0% |
| CTCGAAGCAAAGATCAAAGG+CGG | + | chr5_3:20610880-20610899 | Msa0804670:CDS | 45.0% | |
| ! | GGACAAGGCATCAATACTAG+TGG | + | chr5_3:20611270-20611289 | Msa0804670:CDS | 45.0% |
| AGATAGCCATGCTACCTCAA+AGG | + | chr5_3:20611345-20611364 | Msa0804670:CDS | 45.0% | |
| AGGAAACTGGATCTCCTTTG+AGG | - | chr5_3:20611362-20611381 | None:intergenic | 45.0% | |
| TCAAAGGAGATCCAGTTTCC+TGG | + | chr5_3:20611361-20611380 | Msa0804670:CDS | 45.0% | |
| ! | TTGAGTTGTGAGGATAGACC+AGG | + | chr5_3:20611445-20611464 | Msa0804670:CDS | 45.0% |
| TAAGGTTGAGATGGTGACAG+TGG | + | chr5_3:20611519-20611538 | Msa0804670:CDS | 45.0% | |
| AAGGTTGAGATGGTGACAGT+GGG | + | chr5_3:20611520-20611539 | Msa0804670:CDS | 45.0% | |
| TTGGACCCATAACACACTTC+TGG | - | chr5_3:20611554-20611573 | None:intergenic | 45.0% | |
| ! | AGAAGTGTGTTATGGGTCCA+AGG | + | chr5_3:20611553-20611572 | Msa0804670:CDS | 45.0% |
| !! | TCAAGTTGGGGAGGATACTG+CGG | - | chr5_3:20610988-20611007 | None:intergenic | 50.0% |
| !! | GGATCTCCTTTGAGGTAGCA+TGG | - | chr5_3:20611354-20611373 | None:intergenic | 50.0% |
| AAGGAGATCCAGTTTCCTGG+TGG | + | chr5_3:20611364-20611383 | Msa0804670:CDS | 50.0% | |
| AGGAGATCCAGTTTCCTGGT+GGG | + | chr5_3:20611365-20611384 | Msa0804670:CDS | 50.0% | |
| TTCAATTTGTCTGCCCCACC+AGG | - | chr5_3:20611382-20611401 | None:intergenic | 50.0% | |
| !! | TCAAGTTGGGGAGGATACTG+CGG | - | chr5_3:20610988-20611007 | None:intergenic | 50.0% |
| !! | GGATCTCCTTTGAGGTAGCA+TGG | - | chr5_3:20611354-20611373 | None:intergenic | 50.0% |
| AAGGAGATCCAGTTTCCTGG+TGG | + | chr5_3:20611364-20611383 | Msa0804670:CDS | 50.0% | |
| AGGAGATCCAGTTTCCTGGT+GGG | + | chr5_3:20611365-20611384 | Msa0804670:CDS | 50.0% | |
| TTCAATTTGTCTGCCCCACC+AGG | - | chr5_3:20611382-20611401 | None:intergenic | 50.0% | |
| GGAGATCCAGTTTCCTGGTG+GGG | + | chr5_3:20611366-20611385 | Msa0804670:CDS | 55.0% | |
| GTTGAGATGGTGACAGTGGG+TGG | + | chr5_3:20611523-20611542 | Msa0804670:CDS | 55.0% | |
| GGAGATCCAGTTTCCTGGTG+GGG | + | chr5_3:20611366-20611385 | Msa0804670:CDS | 55.0% | |
| GTTGAGATGGTGACAGTGGG+TGG | + | chr5_3:20611523-20611542 | Msa0804670:CDS | 55.0% | |
| GTTGGGGAGGATACTGCGGA+GGG | - | chr5_3:20610984-20611003 | None:intergenic | 60.0% | |
| AGTTGGGGAGGATACTGCGG+AGG | - | chr5_3:20610985-20611004 | None:intergenic | 60.0% | |
| TGTCTGCCCCACCAGGAAAC+TGG | - | chr5_3:20611375-20611394 | None:intergenic | 60.0% | |
| GTTGGGGAGGATACTGCGGA+GGG | - | chr5_3:20610984-20611003 | None:intergenic | 60.0% | |
| AGTTGGGGAGGATACTGCGG+AGG | - | chr5_3:20610985-20611004 | None:intergenic | 60.0% | |
| TGTCTGCCCCACCAGGAAAC+TGG | - | chr5_3:20611375-20611394 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20610785 | 20611666 | 20610785 | ID=Msa0804670;Name=Msa0804670 |
| chr5_3 | mRNA | 20610785 | 20611666 | 20610785 | ID=Msa0804670-mRNA-1;Parent=Msa0804670;Name=Msa0804670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|208 |
| chr5_3 | exon | 20610785 | 20611012 | 20610785 | ID=Msa0804670-mRNA-1:exon:8321;Parent=Msa0804670-mRNA-1 |
| chr5_3 | exon | 20611268 | 20611666 | 20611268 | ID=Msa0804670-mRNA-1:exon:8322;Parent=Msa0804670-mRNA-1 |
| chr5_3 | CDS | 20610785 | 20611012 | 20610785 | ID=Msa0804670-mRNA-1:cds;Parent=Msa0804670-mRNA-1 |
| chr5_3 | CDS | 20611268 | 20611666 | 20611268 | ID=Msa0804670-mRNA-1:cds;Parent=Msa0804670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
