Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807940 | XP_003614511.2 | 87.935 | 489 | 10 | 3 | 1 | 468 | 4 | 464 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807940 | sp|Q41558|HBP1C_WHEAT | 49.543 | 438 | 190 | 8 | 57 | 468 | 44 | 476 | 3.82e-132 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807940 | A0A396HTL1 | 87.935 | 489 | 10 | 3 | 1 | 468 | 4 | 464 | 0.0 | 822 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0807940 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807940 | MtrunA17_Chr5g0422771 | 87.935 | 489 | 10 | 3 | 1 | 468 | 4 | 464 | 0.0 | 822 |
| Msa0807940 | MtrunA17_Chr7g0256211 | 52.392 | 439 | 173 | 12 | 49 | 468 | 31 | 452 | 5.45e-139 | 407 |
| Msa0807940 | MtrunA17_Chr8g0353501 | 57.184 | 348 | 119 | 4 | 146 | 468 | 124 | 466 | 3.83e-126 | 374 |
| Msa0807940 | MtrunA17_Chr1g0210151 | 59.312 | 349 | 91 | 8 | 160 | 468 | 3 | 340 | 1.64e-123 | 363 |
| Msa0807940 | MtrunA17_Chr1g0174701 | 47.590 | 332 | 145 | 4 | 163 | 468 | 178 | 506 | 1.25e-98 | 305 |
| Msa0807940 | MtrunA17_Chr3g0124601 | 46.398 | 347 | 153 | 4 | 148 | 468 | 22 | 361 | 1.47e-94 | 290 |
| Msa0807940 | MtrunA17_Chr7g0258321 | 48.387 | 310 | 132 | 4 | 184 | 468 | 157 | 463 | 1.32e-91 | 286 |
| Msa0807940 | MtrunA17_Chr2g0321431 | 50.000 | 288 | 116 | 3 | 199 | 468 | 192 | 469 | 7.71e-88 | 277 |
| Msa0807940 | MtrunA17_Chr4g0026401 | 46.177 | 327 | 137 | 5 | 167 | 468 | 149 | 461 | 1.15e-87 | 276 |
| Msa0807940 | MtrunA17_Chr8g0382861 | 41.329 | 346 | 159 | 7 | 148 | 468 | 30 | 356 | 1.68e-70 | 228 |
| Msa0807940 | MtrunA17_Chr3g0093451 | 67.722 | 158 | 39 | 4 | 192 | 337 | 36 | 193 | 1.76e-66 | 212 |
| Msa0807940 | MtrunA17_Chr3g0115371 | 41.438 | 292 | 140 | 3 | 199 | 466 | 63 | 347 | 3.06e-65 | 214 |
| Msa0807940 | MtrunA17_Chr5g0424861 | 42.708 | 288 | 135 | 4 | 201 | 465 | 67 | 347 | 1.39e-64 | 212 |
| Msa0807940 | MtrunA17_Chr5g0424851 | 36.607 | 224 | 116 | 3 | 261 | 465 | 6 | 222 | 2.84e-36 | 139 |
| Msa0807940 | MtrunA17_Chr5g0424851 | 35.437 | 206 | 108 | 2 | 269 | 456 | 228 | 426 | 7.55e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807940 | AT1G68640.1 | 50.339 | 443 | 171 | 9 | 59 | 468 | 26 | 452 | 1.40e-123 | 368 |
| Msa0807940 | AT3G12250.6 | 60.000 | 330 | 102 | 6 | 167 | 468 | 3 | 330 | 2.57e-122 | 360 |
| Msa0807940 | AT3G12250.2 | 60.000 | 330 | 102 | 6 | 167 | 468 | 3 | 330 | 2.57e-122 | 360 |
| Msa0807940 | AT3G12250.7 | 60.000 | 330 | 102 | 6 | 167 | 468 | 3 | 330 | 2.57e-122 | 360 |
| Msa0807940 | AT3G12250.1 | 60.000 | 330 | 102 | 6 | 167 | 468 | 3 | 330 | 2.57e-122 | 360 |
| Msa0807940 | AT3G12250.3 | 61.146 | 314 | 97 | 4 | 178 | 468 | 13 | 324 | 2.59e-120 | 355 |
| Msa0807940 | AT3G12250.5 | 63.889 | 288 | 85 | 2 | 199 | 468 | 17 | 303 | 2.07e-119 | 352 |
| Msa0807940 | AT5G06950.2 | 64.236 | 288 | 84 | 2 | 199 | 468 | 44 | 330 | 3.95e-119 | 352 |
| Msa0807940 | AT5G06950.4 | 64.236 | 288 | 84 | 2 | 199 | 468 | 44 | 330 | 3.95e-119 | 352 |
| Msa0807940 | AT5G06950.1 | 64.236 | 288 | 84 | 2 | 199 | 468 | 44 | 330 | 3.95e-119 | 352 |
| Msa0807940 | AT5G06950.5 | 64.236 | 288 | 84 | 2 | 199 | 468 | 44 | 330 | 3.95e-119 | 352 |
| Msa0807940 | AT5G06950.3 | 64.236 | 288 | 84 | 2 | 199 | 468 | 44 | 330 | 3.95e-119 | 352 |
| Msa0807940 | AT3G12250.4 | 61.290 | 310 | 95 | 4 | 182 | 468 | 48 | 355 | 1.09e-118 | 352 |
| Msa0807940 | AT5G06960.3 | 59.375 | 288 | 98 | 2 | 199 | 468 | 24 | 310 | 1.15e-107 | 322 |
| Msa0807940 | AT5G06960.2 | 59.375 | 288 | 98 | 2 | 199 | 468 | 44 | 330 | 1.88e-107 | 322 |
| Msa0807940 | AT5G06960.1 | 59.375 | 288 | 98 | 2 | 199 | 468 | 44 | 330 | 1.88e-107 | 322 |
| Msa0807940 | AT1G08320.2 | 52.778 | 288 | 108 | 3 | 199 | 468 | 52 | 329 | 3.30e-97 | 297 |
| Msa0807940 | AT1G08320.5 | 52.778 | 288 | 108 | 3 | 199 | 468 | 52 | 329 | 3.30e-97 | 297 |
| Msa0807940 | AT1G08320.1 | 52.778 | 288 | 108 | 3 | 199 | 468 | 176 | 453 | 1.23e-95 | 297 |
| Msa0807940 | AT1G08320.4 | 52.778 | 288 | 108 | 3 | 199 | 468 | 176 | 453 | 1.23e-95 | 297 |
| Msa0807940 | AT1G08320.3 | 52.778 | 288 | 108 | 3 | 199 | 468 | 176 | 453 | 1.23e-95 | 297 |
| Msa0807940 | AT5G06839.3 | 49.062 | 320 | 133 | 4 | 179 | 468 | 139 | 458 | 5.59e-93 | 290 |
| Msa0807940 | AT5G06839.1 | 49.057 | 318 | 132 | 4 | 181 | 468 | 98 | 415 | 1.28e-92 | 287 |
| Msa0807940 | AT5G06839.2 | 49.530 | 319 | 130 | 5 | 181 | 468 | 98 | 416 | 1.93e-92 | 286 |
| Msa0807940 | AT5G10030.5 | 47.692 | 325 | 138 | 6 | 168 | 468 | 46 | 362 | 8.02e-86 | 268 |
| Msa0807940 | AT5G10030.3 | 47.692 | 325 | 138 | 6 | 168 | 468 | 46 | 362 | 8.02e-86 | 268 |
| Msa0807940 | AT5G10030.1 | 47.692 | 325 | 138 | 6 | 168 | 468 | 46 | 362 | 8.02e-86 | 268 |
| Msa0807940 | AT5G10030.4 | 47.692 | 325 | 138 | 6 | 168 | 468 | 46 | 362 | 8.02e-86 | 268 |
| Msa0807940 | AT5G10030.2 | 47.692 | 325 | 138 | 6 | 168 | 468 | 46 | 362 | 8.02e-86 | 268 |
| Msa0807940 | AT1G77920.1 | 44.767 | 344 | 155 | 7 | 146 | 468 | 37 | 366 | 1.24e-84 | 265 |
| Msa0807940 | AT1G22070.1 | 48.837 | 301 | 126 | 5 | 190 | 468 | 88 | 382 | 5.09e-84 | 264 |
| Msa0807940 | AT5G65210.6 | 49.310 | 290 | 118 | 5 | 201 | 468 | 14 | 296 | 8.71e-81 | 253 |
| Msa0807940 | AT5G65210.5 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
| Msa0807940 | AT5G65210.7 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
| Msa0807940 | AT5G65210.3 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
| Msa0807940 | AT5G65210.1 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
| Msa0807940 | AT5G65210.2 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
| Msa0807940 | AT5G65210.4 | 49.310 | 290 | 118 | 5 | 201 | 468 | 84 | 366 | 3.88e-80 | 253 |
Find 103 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTATCCGGTACAGGTTC+TGG | 0.288905 | 5_3:+31432902 | Msa0807940:CDS |
| AGAGTGACCGTTTCCTCTAT+TGG | 0.301083 | 5_3:-31431509 | None:intergenic |
| GTTGAGAATTGGGCTGATTC+TGG | 0.310388 | 5_3:+31431105 | Msa0807940:CDS |
| GGGAATAGCTTCCTTGCCTT+TGG | 0.313064 | 5_3:+31431071 | Msa0807940:CDS |
| GATGTATTTCACATGCTCTA+TGG | 0.319460 | 5_3:+31432390 | Msa0807940:CDS |
| CATTTACCTTCTTCCGTAAC+CGG | 0.349444 | 5_3:-31431696 | None:intergenic |
| AAGTCCAACAATGTTGTTAT+TGG | 0.370112 | 5_3:+31430265 | Msa0807940:CDS |
| GGTGGTAGTAACATGCAGTA+TGG | 0.375687 | 5_3:+31430286 | Msa0807940:CDS |
| ATCGGCATTAAATTCTCAAA+TGG | 0.380282 | 5_3:+31432281 | Msa0807940:CDS |
| GAAATTGTCATGTTGAGAAT+TGG | 0.381065 | 5_3:+31431094 | Msa0807940:CDS |
| CAAGTCCGCCCCTACTCCCT+TGG | 0.382396 | 5_3:-31433389 | None:intergenic |
| TACGAGCACTTAGTTCGTTA+TGG | 0.393700 | 5_3:+31433357 | Msa0807940:CDS |
| GGTCATTCTTCTGTTGGAAA+TGG | 0.397460 | 5_3:+31432037 | Msa0807940:CDS |
| GGAATAGCTTCCTTGCCTTT+GGG | 0.406539 | 5_3:+31431072 | Msa0807940:CDS |
| TGTTCATTGCAAATGCCATC+TGG | 0.411477 | 5_3:-31432946 | None:intergenic |
| GGTGCAGGGTGTTCGGATGC+AGG | 0.422787 | 5_3:+31431015 | Msa0807940:CDS |
| ACCACCAATAACAACATTGT+TGG | 0.423227 | 5_3:-31430269 | None:intergenic |
| GTGATCTTCAGCTCTGAACT+TGG | 0.429104 | 5_3:-31431542 | None:intergenic |
| AATGAACAAGCTTGCACTCC+TGG | 0.437038 | 5_3:+31432961 | Msa0807940:CDS |
| TCTGCTTGTCGATGGTGTTA+TGG | 0.438171 | 5_3:+31432320 | Msa0807940:CDS |
| ACTTTATGTTAGTCCAATAG+AGG | 0.440624 | 5_3:+31431496 | Msa0807940:intron |
| GCCACCAACCCTTCTTGCTT+AGG | 0.443177 | 5_3:+31429945 | Msa0807940:CDS |
| TTCACATGCTCTATGGGTTG+TGG | 0.444720 | 5_3:+31432397 | Msa0807940:CDS |
| TTCAAATGGTGCAGGGTGTT+CGG | 0.453099 | 5_3:+31431008 | Msa0807940:CDS |
| GAAGAATGACCTTGATCTCC+TGG | 0.454057 | 5_3:-31432025 | None:intergenic |
| TCCTCCACACCCTCAGTATC+CGG | 0.457605 | 5_3:+31432890 | Msa0807940:CDS |
| GTTAACTGAAAATCAGTTGA+TGG | 0.459301 | 5_3:+31432775 | Msa0807940:CDS |
| TCCAACAATGTTGTTATTGG+TGG | 0.466223 | 5_3:+31430268 | Msa0807940:CDS |
| AAGTCCGCCCCTACTCCCTT+GGG | 0.467619 | 5_3:-31433388 | None:intergenic |
| AAATTGTCATGTTGAGAATT+GGG | 0.469910 | 5_3:+31431095 | Msa0807940:CDS |
| TATTTAGATTAAAGAGCATA+GGG | 0.475914 | 5_3:+31432358 | Msa0807940:CDS |
| ATTGCAAATCCAGGAGATCA+AGG | 0.479524 | 5_3:+31432016 | Msa0807940:CDS |
| GCTTCAACGAGTACGTCAAC+AGG | 0.481742 | 5_3:+31431899 | Msa0807940:CDS |
| ATGTATTTCACATGCTCTAT+GGG | 0.482660 | 5_3:+31432391 | Msa0807940:CDS |
| GATCAAGGTCATTCTTCTGT+TGG | 0.485204 | 5_3:+31432031 | Msa0807940:CDS |
| TGACATGGAATACACCCATT+GGG | 0.486261 | 5_3:+31432224 | Msa0807940:CDS |
| TGTTAGTCCAATAGAGGAAA+CGG | 0.492474 | 5_3:+31431502 | Msa0807940:intron |
| TGGAAATGTATCTGATTACA+TGG | 0.497198 | 5_3:+31432922 | Msa0807940:CDS |
| GGCATGTTTATTGCAAATCC+AGG | 0.503604 | 5_3:+31432007 | Msa0807940:CDS |
| ATAGGCATATGTACAACAGC+TGG | 0.511396 | 5_3:+31431839 | Msa0807940:intron |
| GAAAAGCCGGTTACGGAAGA+AGG | 0.511768 | 5_3:+31431690 | Msa0807940:CDS |
| GCATCTTGTTGTGGAAAGAA+AGG | 0.513779 | 5_3:-31430115 | None:intergenic |
| CTCAGAATCGCGAGGCGGCA+AGG | 0.517608 | 5_3:+31431668 | Msa0807940:CDS |
| TCGGCATTAAATTCTCAAAT+GGG | 0.518412 | 5_3:+31432282 | Msa0807940:CDS |
| TTGACATGGAATACACCCAT+TGG | 0.518828 | 5_3:+31432223 | Msa0807940:CDS |
| CGTTATGGTTGGCACGCCCA+AGG | 0.525689 | 5_3:+31433372 | Msa0807940:CDS |
| AGCACTTAGTTCGTTATGGT+TGG | 0.528902 | 5_3:+31433361 | Msa0807940:CDS |
| GAGATTGCTTCAAATGGTGC+AGG | 0.534085 | 5_3:+31431000 | Msa0807940:CDS |
| TCTTCAGCAGTCTACTCAGC+AGG | 0.536008 | 5_3:+31432808 | Msa0807940:CDS |
| GTGCAGGGTGTTCGGATGCA+GGG | 0.541110 | 5_3:+31431016 | Msa0807940:CDS |
| CGGCAAGGAAAAGCCGGTTA+CGG | 0.541404 | 5_3:+31431683 | Msa0807940:CDS |
| ACTCACTTGGTGTTTATCAT+CGG | 0.542557 | 5_3:-31431187 | None:intergenic |
| CAAACATACCTAAGCAAGAA+GGG | 0.547170 | 5_3:-31429953 | None:intergenic |
| GCAGAGTTTCTTGCTTCAAG+AGG | 0.550378 | 5_3:-31433259 | None:intergenic |
| TTGATGCTCGTCAACCCAAT+GGG | 0.551351 | 5_3:-31432238 | None:intergenic |
| ACCTAAGCAAGAAGGGTTGG+TGG | 0.551481 | 5_3:-31429946 | None:intergenic |
| TGACGACACGTCAGACTGCA+AGG | 0.551582 | 5_3:+31433300 | Msa0807940:CDS |
| CCTTGTGAAGGAAATCCTCC+AGG | 0.552077 | 5_3:-31432979 | None:intergenic |
| TTAACTGAAAATCAGTTGAT+GGG | 0.554063 | 5_3:+31432776 | Msa0807940:CDS |
| GTTATGGTTGGCACGCCCAA+GGG | 0.555357 | 5_3:+31433373 | Msa0807940:CDS |
| GTGGTAGTAACATGCAGTAT+GGG | 0.556094 | 5_3:+31430287 | Msa0807940:CDS |
| ATCTGATTACATGGGCCAGA+TGG | 0.556171 | 5_3:+31432931 | Msa0807940:CDS |
| TGGAAGTATCATCAGTCTGT+TGG | 0.557670 | 5_3:-31431146 | None:intergenic |
| GCAGTCTACTCAGCAGGCTG+AGG | 0.561351 | 5_3:+31432814 | Msa0807940:CDS |
| TCTGCAGAGATTGCTTCAAA+TGG | 0.562418 | 5_3:+31430994 | Msa0807940:CDS |
| GTTGATGCTCGTCAACCCAA+TGG | 0.562735 | 5_3:-31432239 | None:intergenic |
| TTATTTAGATTAAAGAGCAT+AGG | 0.568168 | 5_3:+31432357 | Msa0807940:CDS |
| ACACCCTCAGTATCCGGTAC+AGG | 0.569132 | 5_3:+31432896 | Msa0807940:CDS |
| GATTCTGAGCAAGTCTGCGA+AGG | 0.570330 | 5_3:-31431654 | None:intergenic |
| GCGAGGCGGCAAGGAAAAGC+CGG | 0.570609 | 5_3:+31431677 | Msa0807940:CDS |
| TACATTTCCAGAACCTGTAC+CGG | 0.573902 | 5_3:-31432909 | None:intergenic |
| AAATCAACAGCATCTTGTTG+TGG | 0.584033 | 5_3:-31430124 | None:intergenic |
| CATACCTAAGCAAGAAGGGT+TGG | 0.587270 | 5_3:-31429949 | None:intergenic |
| CCTGGAGGATTTCCTTCACA+AGG | 0.589186 | 5_3:+31432979 | Msa0807940:CDS |
| GCTGAGGATGCTTTATCTCA+CGG | 0.592632 | 5_3:+31432830 | Msa0807940:CDS |
| TGTACCGGATACTGAGGGTG+TGG | 0.601254 | 5_3:-31432894 | None:intergenic |
| GAATTGGGCTGATTCTGGTG+TGG | 0.601339 | 5_3:+31431110 | Msa0807940:CDS |
| AAATGTAATCATTTCTGACA+AGG | 0.602307 | 5_3:-31433328 | None:intergenic |
| ACAAACATACCTAAGCAAGA+AGG | 0.605783 | 5_3:-31429954 | None:intergenic |
| TATGCTCAATGATCTAAGAT+CGG | 0.606462 | 5_3:+31432263 | Msa0807940:CDS |
| ATGACAATTTCCCAAAGGCA+AGG | 0.624956 | 5_3:-31431082 | None:intergenic |
| GGTATCGATATCAATATCAG+TGG | 0.627662 | 5_3:-31431166 | None:intergenic |
| ATTCTGAGCAAGTCTGCGAA+GGG | 0.627771 | 5_3:-31431653 | None:intergenic |
| AGGTGCTCTAGCATTTGACA+TGG | 0.632527 | 5_3:+31432209 | Msa0807940:intron |
| TCAACATGACAATTTCCCAA+AGG | 0.632745 | 5_3:-31431087 | None:intergenic |
| AGAACCTGTACCGGATACTG+AGG | 0.638578 | 5_3:-31432900 | None:intergenic |
| ACCGGATACTGAGGGTGTGG+AGG | 0.638958 | 5_3:-31432891 | None:intergenic |
| GACGACACGTCAGACTGCAA+GGG | 0.641820 | 5_3:+31433301 | Msa0807940:CDS |
| GTTCAGAGCTGAAGATCACA+AGG | 0.647306 | 5_3:+31431546 | Msa0807940:CDS |
| GGATGCTTTATCTCACGGCA+TGG | 0.651448 | 5_3:+31432835 | Msa0807940:CDS |
| GAACAAGCTTGCACTCCTGG+AGG | 0.653361 | 5_3:+31432964 | Msa0807940:CDS |
| GAATTGCATCTGCTTGTCGA+TGG | 0.653447 | 5_3:+31432312 | Msa0807940:CDS |
| GGAAATGTATCTGATTACAT+GGG | 0.660347 | 5_3:+31432923 | Msa0807940:CDS |
| TTTCAGTTAACGGCTCGAGG+TGG | 0.666369 | 5_3:-31432763 | None:intergenic |
| AGATTGCTTCAAATGGTGCA+GGG | 0.667836 | 5_3:+31431001 | Msa0807940:CDS |
| GTATGGGACAACAATTAACA+TGG | 0.671970 | 5_3:+31430303 | Msa0807940:CDS |
| CAGACTTGCTCAGAATCGCG+AGG | 0.675205 | 5_3:+31431660 | Msa0807940:CDS |
| ATTTAGATTAAAGAGCATAG+GGG | 0.679279 | 5_3:+31432359 | Msa0807940:CDS |
| GAACCTGTACCGGATACTGA+GGG | 0.682605 | 5_3:-31432899 | None:intergenic |
| GCAGCAACTGATGTACAACA+AGG | 0.689178 | 5_3:+31431050 | Msa0807940:CDS |
| ATAGAGCATGTGAAATACAT+CGG | 0.690239 | 5_3:-31432388 | None:intergenic |
| ACTTGCTCAGAATCGCGAGG+CGG | 0.696700 | 5_3:+31431663 | Msa0807940:CDS |
| CAGCAACTGATGTACAACAA+GGG | 0.723615 | 5_3:+31431051 | Msa0807940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAATAAAATTATGTTA+TGG | - | chr5_3:31430363-31430382 | None:intergenic | 10.0% |
| !!! | CCATTTTTTTGATAAAATTA+GGG | - | chr5_3:31430860-31430879 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTTGATAAAATT+AGG | - | chr5_3:31430861-31430880 | None:intergenic | 15.0% |
| !!! | TTAAGCTTTAATGATATATA+CGG | + | chr5_3:31431804-31431823 | Msa0807940:intron | 15.0% |
| !!! | TTATGTTACATTTTTTCACA+GGG | - | chr5_3:31430386-31430405 | None:intergenic | 20.0% |
| !!! | ATTATGTTACATTTTTTCAC+AGG | - | chr5_3:31430387-31430406 | None:intergenic | 20.0% |
| !!! | CATAATTAAATTTCTGAGAA+AGG | + | chr5_3:31430401-31430420 | Msa0807940:intron | 20.0% |
| !!! | TTTTTTGATAAAATTAGGGA+AGG | - | chr5_3:31430856-31430875 | None:intergenic | 20.0% |
| !!! | CCCTAATTTTATCAAAAAAA+TGG | + | chr5_3:31430857-31430876 | Msa0807940:intron | 20.0% |
| !!! | AAAAAATGGACTTAATAAAC+TGG | + | chr5_3:31430871-31430890 | Msa0807940:intron | 20.0% |
| !!! | AAAAATGGACTTAATAAACT+GGG | + | chr5_3:31430872-31430891 | Msa0807940:intron | 20.0% |
| !! | AGTTATTGTATTGTTTGTAT+CGG | - | chr5_3:31431260-31431279 | None:intergenic | 20.0% |
| !! | ATTCAACTTGATTAAATATG+AGG | - | chr5_3:31431336-31431355 | None:intergenic | 20.0% |
| !! | AATATAGATACATATGCAAA+AGG | - | chr5_3:31431745-31431764 | None:intergenic | 20.0% |
| !! | ATAATGTTTATTGATCATTC+AGG | + | chr5_3:31432189-31432208 | Msa0807940:intron | 20.0% |
| !!! | TTATTTAGATTAAAGAGCAT+AGG | + | chr5_3:31432357-31432376 | Msa0807940:CDS | 20.0% |
| !!! | TATTTAGATTAAAGAGCATA+GGG | + | chr5_3:31432358-31432377 | Msa0807940:CDS | 20.0% |
| !! | CAAATAAAAAATCTTTCTAC+TGG | - | chr5_3:31432429-31432448 | None:intergenic | 20.0% |
| !!! | CAGTAGAAAGATTTTTTATT+TGG | + | chr5_3:31432427-31432446 | Msa0807940:intron | 20.0% |
| !! | TTAAAAAACACACTATGAAT+TGG | - | chr5_3:31432494-31432513 | None:intergenic | 20.0% |
| !!! | TTCATAGTGTGTTTTTTAAT+CGG | + | chr5_3:31432495-31432514 | Msa0807940:intron | 20.0% |
| ! | AGTGTAAGAGTTAATGATAA+GGG | - | chr5_3:31430442-31430461 | None:intergenic | 25.0% |
| ! | AAGTGTAAGAGTTAATGATA+AGG | - | chr5_3:31430443-31430462 | None:intergenic | 25.0% |
| ! | ATCATTAACTCTTACACTTT+AGG | + | chr5_3:31430444-31430463 | Msa0807940:intron | 25.0% |
| !! | ATTTTGAACACTATAGTTTG+AGG | - | chr5_3:31430503-31430522 | None:intergenic | 25.0% |
| ! | ATGATTATTAGTGTAACACT+AGG | + | chr5_3:31430550-31430569 | Msa0807940:intron | 25.0% |
| !! | TTGATTCTGTAATTTTCATG+AGG | + | chr5_3:31430584-31430603 | Msa0807940:intron | 25.0% |
| ! | CTAACCTCATTAAAATTACA+GGG | - | chr5_3:31430721-31430740 | None:intergenic | 25.0% |
| !! | TTTGTGTTTTCATAGAATGT+TGG | + | chr5_3:31430970-31430989 | Msa0807940:intron | 25.0% |
| !! | TTGTGTTTTCATAGAATGTT+GGG | + | chr5_3:31430971-31430990 | Msa0807940:intron | 25.0% |
| ! | AAATTGTCATGTTGAGAATT+GGG | + | chr5_3:31431095-31431114 | Msa0807940:CDS | 25.0% |
| !!! | TTTTAATCTAGTTCCTGATT+TGG | + | chr5_3:31431612-31431631 | Msa0807940:intron | 25.0% |
| !!! | AAAAAAAAAGCATCCAAATC+AGG | - | chr5_3:31431628-31431647 | None:intergenic | 25.0% |
| !!! | TATATTTTTGTTGTAGACCA+AGG | + | chr5_3:31431759-31431778 | Msa0807940:intron | 25.0% |
| !!! | ATATTTTTGTTGTAGACCAA+GGG | + | chr5_3:31431760-31431779 | Msa0807940:intron | 25.0% |
| ! | TTAATGATATATACGGATGT+TGG | + | chr5_3:31431811-31431830 | Msa0807940:intron | 25.0% |
| !!! | AATCTGTTTTTTTTTCCTCA+TGG | + | chr5_3:31431966-31431985 | Msa0807940:intron | 25.0% |
| ! | CAATAAACATTATCACAACA+CGG | - | chr5_3:31432182-31432201 | None:intergenic | 25.0% |
| !! | ATTTAGATTAAAGAGCATAG+GGG | + | chr5_3:31432359-31432378 | Msa0807940:CDS | 25.0% |
| !!! | GAAAGATTTTTTATTTGGCA+TGG | + | chr5_3:31432432-31432451 | Msa0807940:intron | 25.0% |
| !!! | ATCAACTGATTTTCAGTTAA+CGG | - | chr5_3:31432776-31432795 | None:intergenic | 25.0% |
| ! | TTAACTGAAAATCAGTTGAT+GGG | + | chr5_3:31432776-31432795 | Msa0807940:CDS | 25.0% |
| !! | AAATCTATTTTACCTTGTGA+AGG | - | chr5_3:31432994-31433013 | None:intergenic | 25.0% |
| ! | AGTTAATCTTTCTATGCTAA+GGG | + | chr5_3:31433016-31433035 | Msa0807940:intron | 25.0% |
| !!! | TCTATTTTTCACATTCATCA+AGG | - | chr5_3:31433074-31433093 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCACATGAAGA+CGG | - | chr5_3:31433122-31433141 | None:intergenic | 25.0% |
| ! | AAATGTAATCATTTCTGACA+AGG | - | chr5_3:31433331-31433350 | None:intergenic | 25.0% |
| GCTTTCTCTTGTGATAAAAA+TGG | + | chr5_3:31429994-31430013 | Msa0807940:CDS | 30.0% | |
| !! | AAAAATGGTTCATGCTGTTT+TGG | + | chr5_3:31430009-31430028 | Msa0807940:CDS | 30.0% |
| ! | GTTTTTGATGAAACAAACAG+AGG | + | chr5_3:31430031-31430050 | Msa0807940:CDS | 30.0% |
| ! | ACAATGCGTTTTTCTGATAT+TGG | + | chr5_3:31430073-31430092 | Msa0807940:CDS | 30.0% |
| !!! | TCTAAACTGTTCTTTTTTGC+AGG | + | chr5_3:31430223-31430242 | Msa0807940:intron | 30.0% |
| AAGTCCAACAATGTTGTTAT+TGG | + | chr5_3:31430265-31430284 | Msa0807940:CDS | 30.0% | |
| TTAATGATAAGGGCAATTTG+TGG | - | chr5_3:31430432-31430451 | None:intergenic | 30.0% | |
| AACCTCTTGAGTAAAAAACA+GGG | + | chr5_3:31430616-31430635 | Msa0807940:intron | 30.0% | |
| GCTAACCTCATTAAAATTAC+AGG | - | chr5_3:31430722-31430741 | None:intergenic | 30.0% | |
| GATGCAAAACAAACAACATA+AGG | - | chr5_3:31430937-31430956 | None:intergenic | 30.0% | |
| GAAATTGTCATGTTGAGAAT+TGG | + | chr5_3:31431094-31431113 | Msa0807940:CDS | 30.0% | |
| AGCAAAACATGTATGAGAAA+TGG | - | chr5_3:31431220-31431239 | None:intergenic | 30.0% | |
| TTGTGTATCTCAATTCATGA+TGG | - | chr5_3:31431393-31431412 | None:intergenic | 30.0% | |
| ACTTTATGTTAGTCCAATAG+AGG | + | chr5_3:31431496-31431515 | Msa0807940:intron | 30.0% | |
| !! | TATTTTTGTTGTAGACCAAG+GGG | + | chr5_3:31431761-31431780 | Msa0807940:intron | 30.0% |
| !!! | ATACGGATGTTGGTTTTAAT+AGG | + | chr5_3:31431821-31431840 | Msa0807940:intron | 30.0% |
| GATTGTACATAAACATCAAC+TGG | - | chr5_3:31431950-31431969 | None:intergenic | 30.0% | |
| CATTAAAATTCACAACCATG+AGG | - | chr5_3:31431984-31432003 | None:intergenic | 30.0% | |
| !! | ATGGTTGTGAATTTTAATGC+AGG | + | chr5_3:31431985-31432004 | Msa0807940:intron | 30.0% |
| !! | TGGTTGTGAATTTTAATGCA+GGG | + | chr5_3:31431986-31432005 | Msa0807940:intron | 30.0% |
| ! | TATGCTCAATGATCTAAGAT+CGG | + | chr5_3:31432263-31432282 | Msa0807940:CDS | 30.0% |
| ATCGGCATTAAATTCTCAAA+TGG | + | chr5_3:31432281-31432300 | Msa0807940:CDS | 30.0% | |
| TCGGCATTAAATTCTCAAAT+GGG | + | chr5_3:31432282-31432301 | Msa0807940:CDS | 30.0% | |
| ATAGAGCATGTGAAATACAT+CGG | - | chr5_3:31432391-31432410 | None:intergenic | 30.0% | |
| ATGTATTTCACATGCTCTAT+GGG | + | chr5_3:31432391-31432410 | Msa0807940:CDS | 30.0% | |
| !!! | TGTTTTTTAATCGGAGAATG+AGG | + | chr5_3:31432504-31432523 | Msa0807940:intron | 30.0% |
| !! | ATTATTTTACAACTGTTCCG+AGG | + | chr5_3:31432557-31432576 | Msa0807940:intron | 30.0% |
| AGCTTGACTTTATAACACAA+GGG | - | chr5_3:31432598-31432617 | None:intergenic | 30.0% | |
| GTTAACTGAAAATCAGTTGA+TGG | + | chr5_3:31432775-31432794 | Msa0807940:CDS | 30.0% | |
| TGGAAATGTATCTGATTACA+TGG | + | chr5_3:31432922-31432941 | Msa0807940:CDS | 30.0% | |
| GGAAATGTATCTGATTACAT+GGG | + | chr5_3:31432923-31432942 | Msa0807940:CDS | 30.0% | |
| CAGTTAATCTTTCTATGCTA+AGG | + | chr5_3:31433015-31433034 | Msa0807940:intron | 30.0% | |
| !! | TTGTTGTCATGCTTGTTTTT+AGG | + | chr5_3:31433232-31433251 | Msa0807940:intron | 30.0% |
| CAAACATACCTAAGCAAGAA+GGG | - | chr5_3:31429956-31429975 | None:intergenic | 35.0% | |
| ACAAACATACCTAAGCAAGA+AGG | - | chr5_3:31429957-31429976 | None:intergenic | 35.0% | |
| AAATCAACAGCATCTTGTTG+TGG | - | chr5_3:31430127-31430146 | None:intergenic | 35.0% | |
| ! | TCCAACAATGTTGTTATTGG+TGG | + | chr5_3:31430268-31430287 | Msa0807940:CDS | 35.0% |
| ACCACCAATAACAACATTGT+TGG | - | chr5_3:31430272-31430291 | None:intergenic | 35.0% | |
| GTATGGGACAACAATTAACA+TGG | + | chr5_3:31430303-31430322 | Msa0807940:CDS | 35.0% | |
| ! | AATTCAAATTCCCTCTGAGA+CGG | + | chr5_3:31430520-31430539 | Msa0807940:intron | 35.0% |
| CAACCTCTTGAGTAAAAAAC+AGG | + | chr5_3:31430615-31430634 | Msa0807940:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACTCAAG+AGG | - | chr5_3:31430621-31430640 | None:intergenic | 35.0% |
| CTTGAGTAAAAAACAGGGTA+AGG | + | chr5_3:31430621-31430640 | Msa0807940:intron | 35.0% | |
| CGTACAATACACCAAATAGT+GGG | + | chr5_3:31430647-31430666 | Msa0807940:intron | 35.0% | |
| ATTAAAATTACAGGGCAACC+TGG | - | chr5_3:31430713-31430732 | None:intergenic | 35.0% | |
| !! | GTTGCCCTGTAATTTTAATG+AGG | + | chr5_3:31430714-31430733 | Msa0807940:intron | 35.0% |
| TTAGCTCAGTTATTAGAGCT+TGG | + | chr5_3:31430737-31430756 | Msa0807940:intron | 35.0% | |
| ! | TTTTACAACTATCTCCGAGA+GGG | - | chr5_3:31430793-31430812 | None:intergenic | 35.0% |
| ! | ATTTTACAACTATCTCCGAG+AGG | - | chr5_3:31430794-31430813 | None:intergenic | 35.0% |
| GGATAAACTATTACTCGCTA+GGG | - | chr5_3:31430916-31430935 | None:intergenic | 35.0% | |
| AGGATAAACTATTACTCGCT+AGG | - | chr5_3:31430917-31430936 | None:intergenic | 35.0% | |
| TCAACATGACAATTTCCCAA+AGG | - | chr5_3:31431090-31431109 | None:intergenic | 35.0% | |
| !! | GGTATCGATATCAATATCAG+TGG | - | chr5_3:31431169-31431188 | None:intergenic | 35.0% |
| !! | ACTCACTTGGTGTTTATCAT+CGG | - | chr5_3:31431190-31431209 | None:intergenic | 35.0% |
| AACATGTATGAGAAATGGAG+AGG | - | chr5_3:31431215-31431234 | None:intergenic | 35.0% | |
| TGTTAGTCCAATAGAGGAAA+CGG | + | chr5_3:31431502-31431521 | Msa0807940:intron | 35.0% | |
| AAATGGTCTCGATGGAAATA+TGG | + | chr5_3:31431714-31431733 | Msa0807940:intron | 35.0% | |
| AATGGTCTCGATGGAAATAT+GGG | + | chr5_3:31431715-31431734 | Msa0807940:intron | 35.0% | |
| AAACATTATCACAACACGGT+GGG | - | chr5_3:31432178-31432197 | None:intergenic | 35.0% | |
| TAAACATTATCACAACACGG+TGG | - | chr5_3:31432179-31432198 | None:intergenic | 35.0% | |
| GATGTATTTCACATGCTCTA+TGG | + | chr5_3:31432390-31432409 | Msa0807940:CDS | 35.0% | |
| CCTTGAGAATTTCAGATGAA+CGG | - | chr5_3:31432464-31432483 | None:intergenic | 35.0% | |
| ACTTTATAACACAAGGGACA+AGG | - | chr5_3:31432592-31432611 | None:intergenic | 35.0% | |
| GAGCTTGACTTTATAACACA+AGG | - | chr5_3:31432599-31432618 | None:intergenic | 35.0% | |
| AACCATGTGTTTGAACTACT+TGG | - | chr5_3:31433185-31433204 | None:intergenic | 35.0% | |
| ! | GCATCTTGTTGTGGAAAGAA+AGG | - | chr5_3:31430118-31430137 | None:intergenic | 40.0% |
| GTGGTAGTAACATGCAGTAT+GGG | + | chr5_3:31430287-31430306 | Msa0807940:CDS | 40.0% | |
| ! | TTACACTTTAGGTGCTACCT+CGG | + | chr5_3:31430455-31430474 | Msa0807940:intron | 40.0% |
| ATGTTAAACTCGTTTCACCG+AGG | - | chr5_3:31430475-31430494 | None:intergenic | 40.0% | |
| ! | CATTTTACAACCGTCTCAGA+GGG | - | chr5_3:31430533-31430552 | None:intergenic | 40.0% |
| ! | TCATTTTACAACCGTCTCAG+AGG | - | chr5_3:31430534-31430553 | None:intergenic | 40.0% |
| GCGTACAATACACCAAATAG+TGG | + | chr5_3:31430646-31430665 | Msa0807940:intron | 40.0% | |
| AGTGATGTTCAAATCCCTCT+CGG | + | chr5_3:31430776-31430795 | Msa0807940:intron | 40.0% | |
| TCTGCAGAGATTGCTTCAAA+TGG | + | chr5_3:31430994-31431013 | Msa0807940:CDS | 40.0% | |
| AGATTGCTTCAAATGGTGCA+GGG | + | chr5_3:31431001-31431020 | Msa0807940:CDS | 40.0% | |
| CAGCAACTGATGTACAACAA+GGG | + | chr5_3:31431051-31431070 | Msa0807940:CDS | 40.0% | |
| ATGACAATTTCCCAAAGGCA+AGG | - | chr5_3:31431085-31431104 | None:intergenic | 40.0% | |
| !! | TGGAAGTATCATCAGTCTGT+TGG | - | chr5_3:31431149-31431168 | None:intergenic | 40.0% |
| AAATGGAGAGGTAACTCACT+TGG | - | chr5_3:31431203-31431222 | None:intergenic | 40.0% | |
| CATTTACCTTCTTCCGTAAC+CGG | - | chr5_3:31431699-31431718 | None:intergenic | 40.0% | |
| AAGAAGGTAAATGGTCTCGA+TGG | + | chr5_3:31431706-31431725 | Msa0807940:intron | 40.0% | |
| CTTTGAATTCAGTAACCCCT+TGG | - | chr5_3:31431779-31431798 | None:intergenic | 40.0% | |
| CAAGGGGTTACTGAATTCAA+AGG | + | chr5_3:31431777-31431796 | Msa0807940:intron | 40.0% | |
| ATAGGCATATGTACAACAGC+TGG | + | chr5_3:31431839-31431858 | Msa0807940:intron | 40.0% | |
| GGCATGTTTATTGCAAATCC+AGG | + | chr5_3:31432007-31432026 | Msa0807940:CDS | 40.0% | |
| ATTGCAAATCCAGGAGATCA+AGG | + | chr5_3:31432016-31432035 | Msa0807940:CDS | 40.0% | |
| GATCAAGGTCATTCTTCTGT+TGG | + | chr5_3:31432031-31432050 | Msa0807940:CDS | 40.0% | |
| GGTCATTCTTCTGTTGGAAA+TGG | + | chr5_3:31432037-31432056 | Msa0807940:CDS | 40.0% | |
| TTGACATGGAATACACCCAT+TGG | + | chr5_3:31432223-31432242 | Msa0807940:CDS | 40.0% | |
| TGACATGGAATACACCCATT+GGG | + | chr5_3:31432224-31432243 | Msa0807940:CDS | 40.0% | |
| ! | CCGTTCATCTGAAATTCTCA+AGG | + | chr5_3:31432461-31432480 | Msa0807940:intron | 40.0% |
| ! | ACAACTGTTCCGAGGAATTT+TGG | + | chr5_3:31432565-31432584 | Msa0807940:intron | 40.0% |
| TACATTTCCAGAACCTGTAC+CGG | - | chr5_3:31432912-31432931 | None:intergenic | 40.0% | |
| TGTTCATTGCAAATGCCATC+TGG | - | chr5_3:31432949-31432968 | None:intergenic | 40.0% | |
| ACATGAAGACGGTAACTTAG+GGG | - | chr5_3:31433111-31433130 | None:intergenic | 40.0% | |
| CACATGAAGACGGTAACTTA+GGG | - | chr5_3:31433112-31433131 | None:intergenic | 40.0% | |
| TCACATGAAGACGGTAACTT+AGG | - | chr5_3:31433113-31433132 | None:intergenic | 40.0% | |
| TTGAACTACTTGGCGAAGAA+GGG | - | chr5_3:31433175-31433194 | None:intergenic | 40.0% | |
| TTTGAACTACTTGGCGAAGA+AGG | - | chr5_3:31433176-31433195 | None:intergenic | 40.0% | |
| TACGAGCACTTAGTTCGTTA+TGG | + | chr5_3:31433357-31433376 | Msa0807940:CDS | 40.0% | |
| AGCACTTAGTTCGTTATGGT+TGG | + | chr5_3:31433361-31433380 | Msa0807940:CDS | 40.0% | |
| CATACCTAAGCAAGAAGGGT+TGG | - | chr5_3:31429952-31429971 | None:intergenic | 45.0% | |
| GGTGGTAGTAACATGCAGTA+TGG | + | chr5_3:31430286-31430305 | Msa0807940:CDS | 45.0% | |
| GGATTTGAACATCACTCCCT+CGG | - | chr5_3:31430772-31430791 | None:intergenic | 45.0% | |
| GAGATTGCTTCAAATGGTGC+AGG | + | chr5_3:31431000-31431019 | Msa0807940:CDS | 45.0% | |
| ! | TTCAAATGGTGCAGGGTGTT+CGG | + | chr5_3:31431008-31431027 | Msa0807940:CDS | 45.0% |
| GCAGCAACTGATGTACAACA+AGG | + | chr5_3:31431050-31431069 | Msa0807940:CDS | 45.0% | |
| GGAATAGCTTCCTTGCCTTT+GGG | + | chr5_3:31431072-31431091 | Msa0807940:CDS | 45.0% | |
| ! | GTTGAGAATTGGGCTGATTC+TGG | + | chr5_3:31431105-31431124 | Msa0807940:CDS | 45.0% |
| AGAGTGACCGTTTCCTCTAT+TGG | - | chr5_3:31431512-31431531 | None:intergenic | 45.0% | |
| !! | GTGATCTTCAGCTCTGAACT+TGG | - | chr5_3:31431545-31431564 | None:intergenic | 45.0% |
| GTTCAGAGCTGAAGATCACA+AGG | + | chr5_3:31431546-31431565 | Msa0807940:CDS | 45.0% | |
| ATTCTGAGCAAGTCTGCGAA+GGG | - | chr5_3:31431656-31431675 | None:intergenic | 45.0% | |
| CGGTTACGGAAGAAGGTAAA+TGG | + | chr5_3:31431697-31431716 | Msa0807940:intron | 45.0% | |
| GAAGAATGACCTTGATCTCC+TGG | - | chr5_3:31432028-31432047 | None:intergenic | 45.0% | |
| AGGTGCTCTAGCATTTGACA+TGG | + | chr5_3:31432209-31432228 | Msa0807940:intron | 45.0% | |
| TTGATGCTCGTCAACCCAAT+GGG | - | chr5_3:31432241-31432260 | None:intergenic | 45.0% | |
| GAATTGCATCTGCTTGTCGA+TGG | + | chr5_3:31432312-31432331 | Msa0807940:CDS | 45.0% | |
| ! | TCTGCTTGTCGATGGTGTTA+TGG | + | chr5_3:31432320-31432339 | Msa0807940:CDS | 45.0% |
| ! | TTCACATGCTCTATGGGTTG+TGG | + | chr5_3:31432397-31432416 | Msa0807940:CDS | 45.0% |
| GGACAAGGTCCAAAATTCCT+CGG | - | chr5_3:31432577-31432596 | None:intergenic | 45.0% | |
| ! | GATTTTCAGTTAACGGCTCG+AGG | - | chr5_3:31432769-31432788 | None:intergenic | 45.0% |
| GCTGAGGATGCTTTATCTCA+CGG | + | chr5_3:31432830-31432849 | Msa0807940:CDS | 45.0% | |
| ATCTGATTACATGGGCCAGA+TGG | + | chr5_3:31432931-31432950 | Msa0807940:CDS | 45.0% | |
| AATGAACAAGCTTGCACTCC+TGG | + | chr5_3:31432961-31432980 | Msa0807940:CDS | 45.0% | |
| CGCCAAGTAGTTCAAACACA+TGG | + | chr5_3:31433180-31433199 | Msa0807940:intron | 45.0% | |
| GCAGAGTTTCTTGCTTCAAG+AGG | - | chr5_3:31433262-31433281 | None:intergenic | 45.0% | |
| !! | ATTATTATTAATTAATAAAG+TGG | - | chr5_3:31430829-31430848 | None:intergenic | 5.0% |
| !! | ATTAAGAATAATTAATTATA+TGG | - | chr5_3:31432696-31432715 | None:intergenic | 5.0% |
| ACCTAAGCAAGAAGGGTTGG+TGG | - | chr5_3:31429949-31429968 | None:intergenic | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | - | chr5_3:31430686-31430705 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | - | chr5_3:31430687-31430706 | None:intergenic | 50.0% | |
| ! | TGCAGGAGCTTTAGTGTACC+AGG | + | chr5_3:31430692-31430711 | Msa0807940:intron | 50.0% |
| GGGAATAGCTTCCTTGCCTT+TGG | + | chr5_3:31431071-31431090 | Msa0807940:CDS | 50.0% | |
| ! | GAATTGGGCTGATTCTGGTG+TGG | + | chr5_3:31431110-31431129 | Msa0807940:CDS | 50.0% |
| GATTCTGAGCAAGTCTGCGA+AGG | - | chr5_3:31431657-31431676 | None:intergenic | 50.0% | |
| GAAAAGCCGGTTACGGAAGA+AGG | + | chr5_3:31431690-31431709 | Msa0807940:CDS | 50.0% | |
| GCTTCAACGAGTACGTCAAC+AGG | + | chr5_3:31431899-31431918 | Msa0807940:CDS | 50.0% | |
| GTTGATGCTCGTCAACCCAA+TGG | - | chr5_3:31432242-31432261 | None:intergenic | 50.0% | |
| TTTCAGTTAACGGCTCGAGG+TGG | - | chr5_3:31432766-31432785 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCTACTCAGC+AGG | + | chr5_3:31432808-31432827 | Msa0807940:CDS | 50.0% | |
| GGATGCTTTATCTCACGGCA+TGG | + | chr5_3:31432835-31432854 | Msa0807940:CDS | 50.0% | |
| GAACCTGTACCGGATACTGA+GGG | - | chr5_3:31432902-31432921 | None:intergenic | 50.0% | |
| AGAACCTGTACCGGATACTG+AGG | - | chr5_3:31432903-31432922 | None:intergenic | 50.0% | |
| TCAGTATCCGGTACAGGTTC+TGG | + | chr5_3:31432902-31432921 | Msa0807940:CDS | 50.0% | |
| CCTTGTGAAGGAAATCCTCC+AGG | - | chr5_3:31432982-31433001 | None:intergenic | 50.0% | |
| CCTGGAGGATTTCCTTCACA+AGG | + | chr5_3:31432979-31432998 | Msa0807940:CDS | 50.0% | |
| AGGGAAGGTCATACTGGAGT+AGG | - | chr5_3:31433156-31433175 | None:intergenic | 50.0% | |
| CGAAGAAGGGAAGGTCATAC+TGG | - | chr5_3:31433162-31433181 | None:intergenic | 50.0% | |
| ACTACTTGGCGAAGAAGGGA+AGG | - | chr5_3:31433171-31433190 | None:intergenic | 50.0% | |
| GCCACCAACCCTTCTTGCTT+AGG | + | chr5_3:31429945-31429964 | Msa0807940:CDS | 55.0% | |
| ! | CAAATAGTGGGACCCCTTCC+CGG | + | chr5_3:31430659-31430678 | Msa0807940:intron | 55.0% |
| !! | AGCTTGGCCTTGTAAGCCGA+GGG | + | chr5_3:31430753-31430772 | Msa0807940:intron | 55.0% |
| CATCACTCCCTCGGCTTACA+AGG | - | chr5_3:31430763-31430782 | None:intergenic | 55.0% | |
| ! | CAGACTTGCTCAGAATCGCG+AGG | + | chr5_3:31431660-31431679 | Msa0807940:CDS | 55.0% |
| ACTTGCTCAGAATCGCGAGG+CGG | + | chr5_3:31431663-31431682 | Msa0807940:CDS | 55.0% | |
| CGGCAAGGAAAAGCCGGTTA+CGG | + | chr5_3:31431683-31431702 | Msa0807940:CDS | 55.0% | |
| TCCTCCACACCCTCAGTATC+CGG | + | chr5_3:31432890-31432909 | Msa0807940:CDS | 55.0% | |
| TGTACCGGATACTGAGGGTG+TGG | - | chr5_3:31432897-31432916 | None:intergenic | 55.0% | |
| ACACCCTCAGTATCCGGTAC+AGG | + | chr5_3:31432896-31432915 | Msa0807940:CDS | 55.0% | |
| GAACAAGCTTGCACTCCTGG+AGG | + | chr5_3:31432964-31432983 | Msa0807940:CDS | 55.0% | |
| TGACGACACGTCAGACTGCA+AGG | + | chr5_3:31433300-31433319 | Msa0807940:CDS | 55.0% | |
| GACGACACGTCAGACTGCAA+GGG | + | chr5_3:31433301-31433320 | Msa0807940:CDS | 55.0% | |
| GTTATGGTTGGCACGCCCAA+GGG | + | chr5_3:31433373-31433392 | Msa0807940:CDS | 55.0% | |
| CGGGAAGGGGTCCCACTATT+TGG | - | chr5_3:31430661-31430680 | None:intergenic | 60.0% | |
| !! | GAGCTTGGCCTTGTAAGCCG+AGG | + | chr5_3:31430752-31430771 | Msa0807940:intron | 60.0% |
| ! | GTGCAGGGTGTTCGGATGCA+GGG | + | chr5_3:31431016-31431035 | Msa0807940:CDS | 60.0% |
| GCAGTCTACTCAGCAGGCTG+AGG | + | chr5_3:31432814-31432833 | Msa0807940:CDS | 60.0% | |
| ! | ACCGGATACTGAGGGTGTGG+AGG | - | chr5_3:31432894-31432913 | None:intergenic | 60.0% |
| CGTTATGGTTGGCACGCCCA+AGG | + | chr5_3:31433372-31433391 | Msa0807940:CDS | 60.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr5_3:31430674-31430693 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr5_3:31430675-31430694 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | - | chr5_3:31430676-31430695 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | + | chr5_3:31430675-31430694 | Msa0807940:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | - | chr5_3:31430680-31430699 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | - | chr5_3:31430681-31430700 | None:intergenic | 65.0% | |
| ! | GGTGCAGGGTGTTCGGATGC+AGG | + | chr5_3:31431015-31431034 | Msa0807940:CDS | 65.0% |
| CTCAGAATCGCGAGGCGGCA+AGG | + | chr5_3:31431668-31431687 | Msa0807940:CDS | 65.0% | |
| GCGAGGCGGCAAGGAAAAGC+CGG | + | chr5_3:31431677-31431696 | Msa0807940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 31429911 | 31433397 | 31429911 | ID=Msa0807940;Name=Msa0807940 |
| chr5_3 | mRNA | 31429911 | 31433397 | 31429911 | ID=Msa0807940-mRNA-1;Parent=Msa0807940;Name=Msa0807940-mRNA-1;_AED=0.12;_eAED=0.17;_QI=0|0.11|0|1|0.88|0.8|10|0|468 |
| chr5_3 | exon | 31429911 | 31430154 | 31429911 | ID=Msa0807940-mRNA-1:exon:10438;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31430245 | 31430324 | 31430245 | ID=Msa0807940-mRNA-1:exon:10439;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31430985 | 31431203 | 31430985 | ID=Msa0807940-mRNA-1:exon:10440;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31431508 | 31431567 | 31431508 | ID=Msa0807940-mRNA-1:exon:10441;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31431652 | 31431711 | 31431652 | ID=Msa0807940-mRNA-1:exon:10442;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31431843 | 31431920 | 31431843 | ID=Msa0807940-mRNA-1:exon:10443;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31432007 | 31432058 | 31432007 | ID=Msa0807940-mRNA-1:exon:10444;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31432211 | 31432428 | 31432211 | ID=Msa0807940-mRNA-1:exon:10445;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31432752 | 31433000 | 31432752 | ID=Msa0807940-mRNA-1:exon:10446;Parent=Msa0807940-mRNA-1 |
| chr5_3 | exon | 31433254 | 31433397 | 31433254 | ID=Msa0807940-mRNA-1:exon:10447;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31429911 | 31430154 | 31429911 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31430245 | 31430324 | 31430245 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31430985 | 31431203 | 31430985 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31431508 | 31431567 | 31431508 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31431652 | 31431711 | 31431652 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31431843 | 31431920 | 31431843 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31432007 | 31432058 | 31432007 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31432211 | 31432428 | 31432211 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31432752 | 31433000 | 31432752 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| chr5_3 | CDS | 31433254 | 31433397 | 31433254 | ID=Msa0807940-mRNA-1:cds;Parent=Msa0807940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
