AlfalfaGEDB | Msa0808210

M. sativa cultivar zhongmu-4 / Msa0808210

KEGG: K04733
GO: -
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808210	sp\|Q9M9C5\|Y1680_ARATH	61.315	654	183	16	33	634	31	666	0.0	717

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808210	G7JZH2	95.447	637	25	1	1	637	1	633	0.0	1249

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808210	MtrunA17_Chr5g0423121	95.447	637	25	1	1	637	1	633	0.0	1249
Msa0808210	MtrunA17_Chr1g0209521	64.536	657	183	14	21	635	18	666	0.0	813
Msa0808210	MtrunA17_Chr3g0128551	44.681	611	315	15	14	611	14	614	9.64e-159	470
Msa0808210	MtrunA17_Chr4g0062911	47.438	605	275	17	33	611	30	617	2.38e-157	467
Msa0808210	MtrunA17_Chr3g0108301	43.513	632	316	19	10	611	6	626	3.48e-155	461
Msa0808210	MtrunA17_Chr7g0265601	41.955	665	313	16	33	631	30	687	1.93e-153	458
Msa0808210	MtrunA17_Chr1g0179521	41.592	666	328	17	15	631	3	656	2.51e-150	449
Msa0808210	MtrunA17_Chr8g0387791	44.084	617	302	21	33	633	23	612	1.11e-148	444
Msa0808210	MtrunA17_Chr5g0434551	43.387	620	275	18	53	630	46	631	4.16e-145	435
Msa0808210	MtrunA17_Chr5g0432851	42.171	645	335	18	8	637	26	647	1.82e-142	429

Showing 1 to 10 of 836 entries

Previous1 2 3 4 5…84Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808210	AT1G68400.1	61.315	654	183	16	33	634	31	666	0.0	717
Msa0808210	AT2G26730.1	46.262	642	310	17	18	632	10	643	7.53e-166	489
Msa0808210	AT2G36570.1	43.918	633	290	18	33	611	24	645	2.78e-158	471
Msa0808210	AT5G58300.3	42.260	646	338	19	5	632	18	646	2.79e-150	449
Msa0808210	AT5G58300.1	42.260	646	338	19	5	632	18	646	2.79e-150	449
Msa0808210	AT5G58300.2	42.260	646	338	19	5	632	18	646	2.79e-150	449
Msa0808210	AT1G48480.1	43.619	619	301	20	31	611	34	642	3.91e-149	446
Msa0808210	AT3G08680.1	43.770	626	305	22	17	611	5	614	3.72e-145	436
Msa0808210	AT3G08680.2	43.770	626	305	22	17	611	5	614	3.72e-145	436
Msa0808210	AT5G05160.1	42.173	626	323	21	11	611	5	616	9.99e-142	427

Showing 1 to 10 of 693 entries

Previous1 2 3 4 5…70Next

Find 202 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAGTCCCCATTCT+TGG	0.256422	5_3:-32143260	None:intergenic
AAAATCGACTAATAATAATT+TGG	0.215434	5_3:-32146221	None:intergenic
AAACACCGTACCATGTGCAT+AGG	0.629191	5_3:-32142665	None:intergenic
AAACCATGCTAACAAGACCA+AGG	0.700055	5_3:+32143355	Msa0808210:CDS
AAATCTGATGTCTACGCCTT+TGG	0.390275	5_3:+32145823	Msa0808210:CDS
AACAAGACTCATAGAAATGG+AGG	0.612256	5_3:+32143236	Msa0808210:CDS
AACACCCACGTGGCAGATTT+TGG	0.195381	5_3:+32145712	Msa0808210:CDS
AACCCCTGCTCCGCCGTCTG+CGG	0.553500	5_3:-32145890	None:intergenic
AAGACCAAGGAAAGAAAACA+AGG	0.628378	5_3:+32143368	Msa0808210:CDS
AAGGCATTGCAATCAAATTT+CGG	0.362466	5_3:-32146366	None:intergenic

Showing 1 to 10 of 202 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGAAAAGAATAGTAGGATTT+AGG	-	chr5_3:32142450-32142469	None:intergenic	30.0%
GATAAATTGTTGACATTCAC+CGG	-	chr5_3:32142963-32142982	None:intergenic	30.0%
AGAAGGTGAAAATCAAAAGA+TGG	+	chr5_3:32143412-32143431	Msa0808210:CDS	30.0%
ATGGTTTATATTGGACAACA+AGG	+	chr5_3:32143431-32143450	Msa0808210:CDS	30.0%
TGGTTTATATTGGACAACAA+GGG	+	chr5_3:32143432-32143451	Msa0808210:CDS	30.0%
GTTGGAGAAAGGTAATAAAA+TGG	+	chr5_3:32143454-32143473	Msa0808210:CDS	30.0%
TATAAAGCTGTTCTTGATGA+TGG	+	chr5_3:32143566-32143585	Msa0808210:CDS	30.0%
ATTGCTTGTCTTTGATTACA+TGG	+	chr5_3:32143730-32143749	Msa0808210:CDS	30.0%
GTCTTTGATTACATGGTTAA+TGG	+	chr5_3:32143737-32143756	Msa0808210:CDS	30.0%
CATATCAAAAACCAGACATT+AGG	-	chr5_3:32144219-32144238	None:intergenic	30.0%

Showing 1 to 10 of 336 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	32142422	32146419	32142422	ID=Msa0808210;Name=Msa0808210
chr5_3	mRNA	32142422	32146419	32142422	ID=Msa0808210-mRNA-1;Parent=Msa0808210;Name=Msa0808210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=70\|1\|1\|1\|1\|1\|2\|234\|637
chr5_3	exon	32142422	32143782	32142422	ID=Msa0808210-mRNA-1:exon:10568;Parent=Msa0808210-mRNA-1
chr5_3	exon	32145563	32146419	32145563	ID=Msa0808210-mRNA-1:exon:10569;Parent=Msa0808210-mRNA-1
chr5_3	five_prime_UTR	32142422	32142491	32142422	ID=Msa0808210-mRNA-1:five_prime_utr;Parent=Msa0808210-mRNA-1
chr5_3	CDS	32142492	32143782	32142492	ID=Msa0808210-mRNA-1:cds;Parent=Msa0808210-mRNA-1
chr5_3	CDS	32145563	32146185	32145563	ID=Msa0808210-mRNA-1:cds;Parent=Msa0808210-mRNA-1
chr5_3	three_prime_UTR	32146186	32146419	32146186	ID=Msa0808210-mRNA-1:three_prime_utr;Parent=Msa0808210-mRNA-1

Gene Sequence

>Msa0808210

ATGGCACAGCCACCTTCTCCTTCCATTCTACACACAACTATCTTCACACTAACCTTCTTCCACTTCCTCCTCTTCACTCACGCCACAAAAAACCCTGATTTCCATCCACTACTTGCATTCAAAACAACCACCGACACATCCAACAAACTCAACACATGGAACATCACCACAAACCTATGCACATGGTACGGTGTTTCCTGTCTCAGAAACCGTGTCTCCCGCCTCGTCCTCGAAAACCTCGACCTCCACGGCTCCATGGAACCGTTAACCGCACTTACTCAACTCCGTGTACTCAGCCTTAAACGCAACCGTTTCAACGGTCCCATTCCAAATCTCTCCAACCTCACTTCACTAAGACTTCTCTTCCTCTCATACAACAATTTCTCCGGTGAGTTCCCGGAAAGTTTAACCTCGTTAACCCGTCTCTACCGGCTTGATCTCGCTCATAACAATCTCTCTGGTGAGATTCCGGTGAATGTCAACAATTTATCTAGCCTCCTCACTCTCAAACTTGATGGAAACCAAATCAATGGACACATTCCAAATATAAACCTCTCTTATCTCCAAGACTTCAATGTCTCTGGTAACAATCTCTCTGGTAGAATACCTGAATTACTTTTGGGTTTTCCTGATTCATCTTTTGCTCAAAACCCGTCTTTATGTGGTGCTCCATTGCAAAAATGTAAAGACGTTCCTGCCCTTGCTTCGTCGTTGGTTCCAACTTCTTCGAGTATAATGTCGAGGAACAAGACTCATAGAAATGGAGGTCCAAGAATGGGGACTTTGGTTTTAATCGCCATTATCCTCGGCGATGTATTAGTACTCGCCATTGTTTCATTGCTTCTCTACTGCTACTTCTGGCGAAACCATGCTAACAAGACCAAGGAAAGAAAACAAGGAGAATCGAATTCGAAGAATGTAGAAGGTGAAAATCAAAAGATGGTTTATATTGGACAACAAGGGTTGGAGAAAGGTAATAAAATGGTGTTTTTTGAAGGAGTCAAGAGGTTTGAGCTAGAGGATTTGCTTCGTGCTTCGGCGGAAATGTTGGGGAAGGGTACCTTAGGAACTGTCTATAAAGCTGTTCTTGATGATGGGAGTGTTGTAGCTGTGAAGAGGTTGAAGGAGATTAATATTAGTGGGAAGAAAGAGTTCGAGCAGAGAATGGAAGTTCTTGGAAAGTTAAGACACTCCAACATTGTTAGCTTGAAGGCTTATTATTTTGCAAGGGATGAAAAATTGCTTGTCTTTGATTACATGGTTAATGGTAGCTTGTTTTGGCTTCTTCATGGTAACCGAGGACCCGGACGAACCCCACTTGACTGGACCACAAGACTAAAGATAGCAACCCAAACAGCACAAGGTATAGCCTTTATTCACAACAACAATCTCACCCATGGTAACATCAAATCCACCAATATCCTCATCAACGTCTCAGGAAACACCCACGTGGCAGATTTTGGACTCTCCATTTTCACCCACCCATCAAAAACAAGATCCAACGGCTACCGCGCTCCAGAAACATCATCAGACGGTCGAAAACACTCCCAAAAATCTGATGTCTACGCCTTTGGCGTTTTACTAATGGAGATACTAACAGGGAAATGCCCCTCCTCCGCCGCAGACGGCGGAGCAGGGGTTGAGCTGCCTAAGTGGGTCCAGTCAGTTGTTAGGGAGGAATGGACTGCTGAGGTGTTTGATCTTGAGTTGATGAGGTATAAGGATGCTGAAGAGGAGATGGTGACATTGTTGAAGATTGCGATGACGTGTACTGTGACTGTACCTGATCAACGGCCTAAGATGAGCCACGTGGTTAAGAAGATCGAGGAGTTGTGTGATGTGTCCACGTGTCATGACTCGGTTTCTGACTCACCTTCGATGTCTGAAGATGCACGTGGAGGTGCTATTAACTAA

Protein sequence

>Msa0808210

MAQPPSPSILHTTIFTLTFFHFLLFTHATKNPDFHPLLAFKTTTDTSNKLNTWNITTNLCTWYGVSCLRNRVSRLVLENLDLHGSMEPLTALTQLRVLSLKRNRFNGPIPNLSNLTSLRLLFLSYNNFSGEFPESLTSLTRLYRLDLAHNNLSGEIPVNVNNLSSLLTLKLDGNQINGHIPNINLSYLQDFNVSGNNLSGRIPELLLGFPDSSFAQNPSLCGAPLQKCKDVPALASSLVPTSSSIMSRNKTHRNGGPRMGTLVLIAIILGDVLVLAIVSLLLYCYFWRNHANKTKERKQGESNSKNVEGENQKMVYIGQQGLEKGNKMVFFEGVKRFELEDLLRASAEMLGKGTLGTVYKAVLDDGSVVAVKRLKEINISGKKEFEQRMEVLGKLRHSNIVSLKAYYFARDEKLLVFDYMVNGSLFWLLHGNRGPGRTPLDWTTRLKIATQTAQGIAFIHNNNLTHGNIKSTNILINVSGNTHVADFGLSIFTHPSKTRSNGYRAPETSSDGRKHSQKSDVYAFGVLLMEILTGKCPSSAADGGAGVELPKWVQSVVREEWTAEVFDLELMRYKDAEEEMVTLLKIAMTCTVTVPDQRPKMSHVVKKIEELCDVSTCHDSVSDSPSMSEDARGGAIN*