Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808230 | XP_039686443.1 | 92.517 | 147 | 7 | 1 | 1 | 143 | 1 | 147 | 2.07e-90 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808230 | sp|Q9SZL8|FRS5_ARATH | 35.156 | 128 | 75 | 3 | 23 | 143 | 60 | 186 | 7.04e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808230 | A0A2K3LRX3 | 64.626 | 147 | 48 | 1 | 1 | 143 | 1 | 147 | 4.73e-56 | 186 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0808230 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808230 | MtrunA17_Chr3g0082121 | 64.336 | 143 | 47 | 1 | 1 | 139 | 8 | 150 | 4.05e-53 | 182 |
| Msa0808230 | MtrunA17_Chr3g0082121 | 50.000 | 82 | 34 | 2 | 165 | 239 | 614 | 695 | 5.29e-13 | 68.2 |
| Msa0808230 | MtrunA17_Chr5g0401121 | 62.595 | 131 | 41 | 2 | 12 | 138 | 36 | 162 | 1.55e-44 | 147 |
| Msa0808230 | MtrunA17_Chr6g0458391 | 43.697 | 119 | 62 | 2 | 29 | 143 | 218 | 335 | 3.26e-21 | 92.4 |
| Msa0808230 | MtrunA17_Chr6g0458391 | 40.351 | 114 | 62 | 3 | 34 | 143 | 89 | 200 | 4.32e-15 | 74.3 |
| Msa0808230 | MtrunA17_Chr1g0203721 | 44.792 | 96 | 48 | 2 | 41 | 132 | 68 | 162 | 9.12e-18 | 82.4 |
| Msa0808230 | MtrunA17_Chr4g0033611 | 41.667 | 108 | 53 | 4 | 35 | 136 | 75 | 178 | 5.18e-16 | 75.1 |
| Msa0808230 | MtrunA17_Chr2g0324011 | 43.103 | 116 | 58 | 4 | 33 | 143 | 7 | 119 | 5.40e-16 | 77.0 |
| Msa0808230 | MtrunA17_Chr5g0448761 | 36.441 | 118 | 68 | 2 | 33 | 143 | 57 | 174 | 5.88e-15 | 73.9 |
| Msa0808230 | MtrunA17_Chr2g0329421 | 38.053 | 113 | 58 | 5 | 30 | 136 | 23 | 129 | 2.39e-14 | 69.7 |
| Msa0808230 | MtrunA17_Chr7g0238821 | 40.909 | 110 | 57 | 4 | 40 | 144 | 1 | 107 | 3.18e-14 | 67.0 |
| Msa0808230 | MtrunA17_Chr7g0258861 | 40.171 | 117 | 61 | 5 | 33 | 143 | 7 | 120 | 2.01e-11 | 62.8 |
| Msa0808230 | MtrunA17_Chr7g0233911 | 33.333 | 120 | 62 | 4 | 26 | 134 | 24 | 136 | 4.62e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808230 | AT2G43280.1 | 34.591 | 159 | 89 | 6 | 34 | 179 | 20 | 176 | 1.60e-17 | 78.6 |
| Msa0808230 | AT3G59470.3 | 33.103 | 145 | 81 | 4 | 35 | 175 | 69 | 201 | 3.05e-15 | 73.6 |
| Msa0808230 | AT3G59470.1 | 33.103 | 145 | 81 | 4 | 35 | 175 | 69 | 201 | 3.05e-15 | 73.6 |
| Msa0808230 | AT3G59470.2 | 33.103 | 145 | 81 | 4 | 35 | 175 | 81 | 213 | 3.46e-15 | 73.6 |
| Msa0808230 | AT4G38180.1 | 35.156 | 128 | 75 | 3 | 23 | 143 | 60 | 186 | 7.16e-14 | 71.2 |
| Msa0808230 | AT3G07500.1 | 37.383 | 107 | 62 | 2 | 34 | 136 | 31 | 136 | 7.70e-12 | 63.5 |
| Msa0808230 | AT2G43280.2 | 31.690 | 142 | 82 | 6 | 51 | 179 | 2 | 141 | 9.73e-12 | 62.4 |
| Msa0808230 | AT4G12850.1 | 38.462 | 104 | 56 | 3 | 36 | 135 | 11 | 110 | 6.83e-11 | 60.1 |
| Msa0808230 | AT4G12850.4 | 38.462 | 104 | 56 | 3 | 36 | 135 | 11 | 110 | 6.84e-11 | 59.3 |
Find 51 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATCCGTCGCCTATTT+TGG | 0.196150 | 5_3:-32177830 | Msa0808230:CDS |
| AGACAATTCTGTTGATAAAT+TGG | 0.199895 | 5_3:-32177806 | Msa0808230:CDS |
| ACAGAATTGTCTACCAAAAT+AGG | 0.261577 | 5_3:+32177817 | None:intergenic |
| TTTATCATTTCCAAGTGATA+TGG | 0.308340 | 5_3:+32176532 | None:intergenic |
| AATGAGTATAGTAAAAGAAT+TGG | 0.336174 | 5_3:-32177673 | Msa0808230:CDS |
| ATTTCACTTGATCGAAAGAT+AGG | 0.345588 | 5_3:-32177484 | Msa0808230:CDS |
| CCATCCACTTTACGACTTCA+TGG | 0.381057 | 5_3:+32173009 | None:intergenic |
| TTAGTGGAACGTGAACAATT+TGG | 0.393170 | 5_3:+32176461 | None:intergenic |
| TATAGTAAAAGAATTGGATT+TGG | 0.393932 | 5_3:-32177667 | Msa0808230:intron |
| GATATTCCTCGTATTCCTCT+TGG | 0.399365 | 5_3:+32177021 | None:intergenic |
| GCTGGACTCTTCATAAACTT+TGG | 0.408472 | 5_3:+32176622 | None:intergenic |
| AGAATCAAGTGGAATGGTTC+AGG | 0.410213 | 5_3:-32176558 | Msa0808230:CDS |
| TGCATAAAGGTGTTGAAAGA+AGG | 0.445593 | 5_3:-32176990 | Msa0808230:intron |
| AACGGGGTGTAATGCACGTA+TGG | 0.472531 | 5_3:-32177509 | Msa0808230:CDS |
| GAAACCGTTGTCAAGGCAAA+AGG | 0.474191 | 5_3:-32176494 | Msa0808230:CDS |
| ATATCAAGACACTTGCATAA+AGG | 0.478993 | 5_3:-32177003 | Msa0808230:CDS |
| GGGTGTAAACATTTCCGGCT+TGG | 0.486090 | 5_3:+32177063 | None:intergenic |
| TTGGTATTCATCGAGAATAT+GGG | 0.496519 | 5_3:-32177648 | Msa0808230:intron |
| TGACGACATCAAACCTCGCT+TGG | 0.500006 | 5_3:-32177737 | Msa0808230:CDS |
| TCTACGGCAGAAACTAGAAC+GGG | 0.501864 | 5_3:-32177526 | Msa0808230:CDS |
| CACTATTCTTGAACAAAATG+AGG | 0.507123 | 5_3:-32177779 | Msa0808230:CDS |
| CAAAATAGTTGAAGATATGT+TGG | 0.512003 | 5_3:-32176600 | Msa0808230:CDS |
| CATACTCTTGTGGCTGAAGA+AGG | 0.512605 | 5_3:+32177422 | None:intergenic |
| GACAAAAGACATCAACCGAC+TGG | 0.526295 | 5_3:-32177553 | Msa0808230:CDS |
| CCACTTTACGACTTCATGGT+GGG | 0.556197 | 5_3:+32173013 | None:intergenic |
| CAGCGTGGAAACCGTTGTCA+AGG | 0.559219 | 5_3:-32176501 | Msa0808230:CDS |
| TTTCACTTGATCGAAAGATA+GGG | 0.567868 | 5_3:-32177483 | Msa0808230:CDS |
| GCTCGAATGCTCGTCCAAGC+CGG | 0.569311 | 5_3:-32177077 | Msa0808230:CDS |
| ACAAAAGACATCAACCGACT+GGG | 0.569421 | 5_3:-32177552 | Msa0808230:CDS |
| TCAACCGACTGGGGAGTCTA+CGG | 0.570613 | 5_3:-32177542 | Msa0808230:CDS |
| GTTCAGGTAACCATATCACT+TGG | 0.580181 | 5_3:-32176542 | Msa0808230:CDS |
| AGATTCACATGCTACAAAGA+AGG | 0.592653 | 5_3:-32177589 | Msa0808230:CDS |
| GGATATGATATTTGAATCCG+AGG | 0.604669 | 5_3:-32177716 | Msa0808230:CDS |
| CTTGAACAAAATGAGGAACA+TGG | 0.611748 | 5_3:-32177772 | Msa0808230:CDS |
| ACGGGGTGTAATGCACGTAT+GGG | 0.615409 | 5_3:-32177508 | Msa0808230:CDS |
| TCCACTTTACGACTTCATGG+TGG | 0.616492 | 5_3:+32173012 | None:intergenic |
| TTGTCTACCAAAATAGGCGA+CGG | 0.617331 | 5_3:+32177823 | None:intergenic |
| TCAAATATCATATCCAAGCG+AGG | 0.630717 | 5_3:+32177724 | None:intergenic |
| GTCTACGGCAGAAACTAGAA+CGG | 0.642684 | 5_3:-32177527 | Msa0808230:CDS |
| TCGAAAGATAGGGAAATACA+AGG | 0.644061 | 5_3:-32177473 | Msa0808230:CDS |
| AAATTCGTAAGCAGCTACCT+CGG | 0.647055 | 5_3:+32177699 | None:intergenic |
| AATATTTGAGGAATTCCAAG+AGG | 0.661269 | 5_3:-32177036 | Msa0808230:CDS |
| GGATGGAGAATCAAGTGGAA+TGG | 0.662094 | 5_3:-32176564 | Msa0808230:CDS |
| TCTGCCGTAGACTCCCCAGT+CGG | 0.665919 | 5_3:+32177538 | None:intergenic |
| TGTGTGGATGGAGAATCAAG+TGG | 0.678307 | 5_3:-32176569 | Msa0808230:CDS |
| GGAATTCCAAGAGGAATACG+AGG | 0.680926 | 5_3:-32177027 | Msa0808230:CDS |
| ACTCTTGTGGCTGAAGAAGG+TGG | 0.685524 | 5_3:+32177425 | None:intergenic |
| CAAAAGACATCAACCGACTG+GGG | 0.686861 | 5_3:-32177551 | Msa0808230:CDS |
| ATCATGTGAACATACTCTTG+TGG | 0.707114 | 5_3:+32177412 | None:intergenic |
| TGATAAAACTCATAACAGCG+TGG | 0.718024 | 5_3:-32176516 | Msa0808230:CDS |
| CTACGGCAGAAACTAGAACG+GGG | 0.748090 | 5_3:-32177525 | Msa0808230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAAATAAATGGTTT+TGG | + | chr5_3:32176790-32176809 | None:intergenic | 10.0% |
| !! | TAACGTATTTATATTAATAT+TGG | - | chr5_3:32177600-32177619 | Msa0808230:CDS | 10.0% |
| !! | ATAACTAAAATATAAAACTA+AGG | + | chr5_3:32177798-32177817 | None:intergenic | 10.0% |
| !!! | AATTTTTTACACACTTTAAA+AGG | - | chr5_3:32173674-32173693 | Msa0808230:intron | 15.0% |
| !!! | ATTTTTTACACACTTTAAAA+GGG | - | chr5_3:32173675-32173694 | Msa0808230:intron | 15.0% |
| !! | ATTGTTATAATTCAAAAAAC+TGG | + | chr5_3:32174900-32174919 | None:intergenic | 15.0% |
| !!! | AAAATATCAATCTAAAACTT+CGG | + | chr5_3:32175386-32175405 | None:intergenic | 15.0% |
| !!! | AAGTTTTAGATTGATATTTT+TGG | - | chr5_3:32175386-32175405 | Msa0808230:intron | 15.0% |
| !! | TAAATTAAAGATTGTTTGTT+TGG | + | chr5_3:32175792-32175811 | None:intergenic | 15.0% |
| !! | AAATAATTCTGAATAAAACT+AGG | + | chr5_3:32176403-32176422 | None:intergenic | 15.0% |
| !! | TAAATTACGTTATAGAAATT+TGG | + | chr5_3:32177267-32177286 | None:intergenic | 15.0% |
| !! | AATGAGTATAGTAAAAGAAT+TGG | - | chr5_3:32173182-32173201 | Msa0808230:intron | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | - | chr5_3:32173188-32173207 | Msa0808230:intron | 20.0% |
| !!! | TTTTTCGATTTAAGGAAAAA+TGG | - | chr5_3:32173539-32173558 | Msa0808230:intron | 20.0% |
| !!! | TTTTCGATTTAAGGAAAAAT+GGG | - | chr5_3:32173540-32173559 | Msa0808230:intron | 20.0% |
| !!! | ATTATGATAATGTAAAAGAG+AGG | - | chr5_3:32173905-32173924 | Msa0808230:intron | 20.0% |
| !!! | AAGTATTTTGATGTATTTGA+TGG | - | chr5_3:32174830-32174849 | Msa0808230:intron | 20.0% |
| !!! | AGTATTTTGATGTATTTGAT+GGG | - | chr5_3:32174831-32174850 | Msa0808230:intron | 20.0% |
| !! | TATGACAATTTACTTGTTTA+TGG | - | chr5_3:32174869-32174888 | Msa0808230:intron | 20.0% |
| !! | TATAGTTTACTTGTTTATCA+TGG | - | chr5_3:32175143-32175162 | Msa0808230:intron | 20.0% |
| !!! | AAGTTTTAGAGTGATATTTT+TGG | - | chr5_3:32175232-32175251 | Msa0808230:intron | 20.0% |
| !! | TCATAGCAGTTAAAAAAAAT+TGG | + | chr5_3:32175258-32175277 | None:intergenic | 20.0% |
| !! | GACATATAAAAATTCTGTTA+CGG | + | chr5_3:32175358-32175377 | None:intergenic | 20.0% |
| !! | TTCATTGCAGTAAAAAAAAA+AGG | + | chr5_3:32175412-32175431 | None:intergenic | 20.0% |
| !! | TTAATTACTAAAATCTTCAG+AGG | - | chr5_3:32175685-32175704 | Msa0808230:intron | 20.0% |
| !! | AAAGAGTTTATATAATCACA+TGG | + | chr5_3:32176364-32176383 | None:intergenic | 20.0% |
| !! | TGAATTGGATATAATAATTC+TGG | - | chr5_3:32176496-32176515 | Msa0808230:CDS | 20.0% |
| !!! | AATAATTCTGGTTAATCTAA+CGG | - | chr5_3:32176508-32176527 | Msa0808230:CDS | 20.0% |
| !! | ATCAATTAATTATCGTTGTT+TGG | + | chr5_3:32176732-32176751 | None:intergenic | 20.0% |
| !! | ATAAAGGATTTAACAAATAG+CGG | + | chr5_3:32176853-32176872 | None:intergenic | 20.0% |
| !! | CTTAATTTCAAGAACAAATA+TGG | + | chr5_3:32177225-32177244 | None:intergenic | 20.0% |
| !!! | TTTTAAGTGTCAAGTTTATT+AGG | + | chr5_3:32177304-32177323 | None:intergenic | 20.0% |
| !! | AATTATACATAGTAGATAGA+TGG | - | chr5_3:32177437-32177456 | Msa0808230:CDS | 20.0% |
| !!! | TTTTAGTTATAGTAATTGAG+TGG | - | chr5_3:32177808-32177827 | Msa0808230:CDS | 20.0% |
| !! | AGACAATTCTGTTGATAAAT+TGG | - | chr5_3:32173049-32173068 | Msa0808230:intron | 25.0% |
| ! | ACAAGCATCACAAATTATAA+TGG | - | chr5_3:32173493-32173512 | Msa0808230:intron | 25.0% |
| ! | CAAGCATCACAAATTATAAT+GGG | - | chr5_3:32173494-32173513 | Msa0808230:intron | 25.0% |
| !!! | GCATATGATTTTTCGATTTA+AGG | - | chr5_3:32173531-32173550 | Msa0808230:intron | 25.0% |
| !! | TTTGAAATACCATTTGAAGT+CGG | - | chr5_3:32173636-32173655 | Msa0808230:intron | 25.0% |
| ! | AATTTAAATCCGACTTCAAA+TGG | + | chr5_3:32173648-32173667 | None:intergenic | 25.0% |
| !!! | GAATTCCTCAAATATTTTTG+GGG | + | chr5_3:32173815-32173834 | None:intergenic | 25.0% |
| !! | GGAATTCCTCAAATATTTTT+GGG | + | chr5_3:32173816-32173835 | None:intergenic | 25.0% |
| !! | TGGAATTCCTCAAATATTTT+TGG | + | chr5_3:32173817-32173836 | None:intergenic | 25.0% |
| ! | CAAAATAGTTGAAGATATGT+TGG | - | chr5_3:32174255-32174274 | Msa0808230:intron | 25.0% |
| ! | TTTATCATTTCCAAGTGATA+TGG | + | chr5_3:32174326-32174345 | None:intergenic | 25.0% |
| ! | TATCATCAAGCTTCAATTAA+AGG | - | chr5_3:32174645-32174664 | Msa0808230:intron | 25.0% |
| ! | ATCATCAAGCTTCAATTAAA+GGG | - | chr5_3:32174646-32174665 | Msa0808230:intron | 25.0% |
| ! | AAACAAAGCGAAATAGTATA+AGG | + | chr5_3:32175102-32175121 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGAGTGATATTCT+TGG | - | chr5_3:32175541-32175560 | Msa0808230:intron | 25.0% |
| ! | ATTAAAGATTGTTTGTTTGG+TGG | + | chr5_3:32175789-32175808 | None:intergenic | 25.0% |
| ! | TATATCCAATTCAATAGCTA+GGG | + | chr5_3:32176489-32176508 | None:intergenic | 25.0% |
| ! | TTATATCCAATTCAATAGCT+AGG | + | chr5_3:32176490-32176509 | None:intergenic | 25.0% |
| !! | ATAATTCTGGTTAATCTAAC+GGG | - | chr5_3:32176509-32176528 | Msa0808230:CDS | 25.0% |
| !!! | ACTATTTTGTTAATTTGTCG+TGG | - | chr5_3:32176669-32176688 | Msa0808230:intron | 25.0% |
| !!! | CTATTTTGTTAATTTGTCGT+GGG | - | chr5_3:32176670-32176689 | Msa0808230:intron | 25.0% |
| ! | TAAAGGATTTAACAAATAGC+GGG | + | chr5_3:32176852-32176871 | None:intergenic | 25.0% |
| ! | GGTTAAAAATATCACTAAAG+AGG | - | chr5_3:32177039-32177058 | Msa0808230:CDS | 25.0% |
| ! | CTGATAAGTCAATAATTTAG+TGG | + | chr5_3:32177327-32177346 | None:intergenic | 25.0% |
| ! | TCATACTCATATTATAGTAG+AGG | - | chr5_3:32177351-32177370 | Msa0808230:intron | 25.0% |
| ! | TAATATTGGAATTGTGTTAG+CGG | - | chr5_3:32177614-32177633 | Msa0808230:CDS | 25.0% |
| ! | CAATTTAAATAACTAGAGTC+TGG | + | chr5_3:32177730-32177749 | None:intergenic | 25.0% |
| ACAGAATTGTCTACCAAAAT+AGG | + | chr5_3:32173041-32173060 | None:intergenic | 30.0% | |
| CACTATTCTTGAACAAAATG+AGG | - | chr5_3:32173076-32173095 | Msa0808230:intron | 30.0% | |
| TTTGGTATTCATCGAGAATA+TGG | - | chr5_3:32173206-32173225 | Msa0808230:intron | 30.0% | |
| TTGGTATTCATCGAGAATAT+GGG | - | chr5_3:32173207-32173226 | Msa0808230:intron | 30.0% | |
| GGGAATAAAAGCAAAAAAGA+CGG | - | chr5_3:32173227-32173246 | Msa0808230:intron | 30.0% | |
| GGAATAAAAGCAAAAAAGAC+GGG | - | chr5_3:32173228-32173247 | Msa0808230:intron | 30.0% | |
| GAATAAAAGCAAAAAAGACG+GGG | - | chr5_3:32173229-32173248 | Msa0808230:intron | 30.0% | |
| ATTTCACTTGATCGAAAGAT+AGG | - | chr5_3:32173371-32173390 | Msa0808230:intron | 30.0% | |
| TTTCACTTGATCGAAAGATA+GGG | - | chr5_3:32173372-32173391 | Msa0808230:intron | 30.0% | |
| ! | ATTATAATGGGAGATGTATC+TGG | - | chr5_3:32173506-32173525 | Msa0808230:intron | 30.0% |
| ACCTAGATTGAAAATGAAGA+AGG | - | chr5_3:32173756-32173775 | Msa0808230:intron | 30.0% | |
| TTACACCCCAAAAATATTTG+AGG | - | chr5_3:32173807-32173826 | Msa0808230:intron | 30.0% | |
| AATATTTGAGGAATTCCAAG+AGG | - | chr5_3:32173819-32173838 | Msa0808230:intron | 30.0% | |
| ATATCAAGACACTTGCATAA+AGG | - | chr5_3:32173852-32173871 | Msa0808230:intron | 30.0% | |
| AACACTATATACTAAAGCGA+TGG | - | chr5_3:32174050-32174069 | Msa0808230:intron | 30.0% | |
| GAAGTAATCAAGATTGGAAA+GGG | - | chr5_3:32174092-32174111 | Msa0808230:intron | 30.0% | |
| ATGTCCTCCAATGATTAAAT+TGG | - | chr5_3:32174168-32174187 | Msa0808230:intron | 30.0% | |
| ! | CATATCTTCAACTATTTTGC+TGG | + | chr5_3:32174254-32174273 | None:intergenic | 30.0% |
| !!! | AGATTTAGCTCGTTTTTTAG+TGG | + | chr5_3:32174413-32174432 | None:intergenic | 30.0% |
| CTAAAAAACGAGCTAAATCT+TGG | - | chr5_3:32174413-32174432 | Msa0808230:intron | 30.0% | |
| ACATGAAAAACAGTCTTTAG+CGG | - | chr5_3:32174496-32174515 | Msa0808230:intron | 30.0% | |
| CATTGAGAGAAATTGAATTG+AGG | + | chr5_3:32174620-32174639 | None:intergenic | 30.0% | |
| CTCAATTCAATTTCTCTCAA+TGG | - | chr5_3:32174618-32174637 | Msa0808230:intron | 30.0% | |
| CAATCAAGCGAAGTTAATAA+TGG | - | chr5_3:32174721-32174740 | Msa0808230:intron | 30.0% | |
| TGAAATCCAATAGAAACCAA+CGG | + | chr5_3:32175071-32175090 | None:intergenic | 30.0% | |
| !!! | GAATTTTAGTTGATACCACA+TGG | - | chr5_3:32175323-32175342 | Msa0808230:intron | 30.0% |
| ! | AAGCCTGAAAGGATTATTTT+TGG | - | chr5_3:32175733-32175752 | Msa0808230:intron | 30.0% |
| !! | AGCCTGAAAGGATTATTTTT+GGG | - | chr5_3:32175734-32175753 | Msa0808230:intron | 30.0% |
| TTTACTTTCATGATCATGTC+CGG | - | chr5_3:32176290-32176309 | Msa0808230:intron | 30.0% | |
| AACATTCATAAAGCCTTCAA+CGG | - | chr5_3:32176575-32176594 | Msa0808230:CDS | 30.0% | |
| TTTATAAGTTCGTATCCACA+GGG | + | chr5_3:32176910-32176929 | None:intergenic | 30.0% | |
| ATTTATAAGTTCGTATCCAC+AGG | + | chr5_3:32176911-32176930 | None:intergenic | 30.0% | |
| ! | TTTTTAACCTAAAAGCCCAT+GGG | + | chr5_3:32177028-32177047 | None:intergenic | 30.0% |
| ! | ATTTTTAACCTAAAAGCCCA+TGG | + | chr5_3:32177029-32177048 | None:intergenic | 30.0% |
| ! | TTCATATTTTGCTCCTCAAT+CGG | - | chr5_3:32177122-32177141 | Msa0808230:intron | 30.0% |
| AATATGGTGAAATCAAGTCT+TGG | + | chr5_3:32177209-32177228 | None:intergenic | 30.0% | |
| TATTATAGTAGAGGACAATG+AGG | - | chr5_3:32177360-32177379 | Msa0808230:intron | 30.0% | |
| ATTATAGTAGAGGACAATGA+GGG | - | chr5_3:32177361-32177380 | Msa0808230:intron | 30.0% | |
| TAAATTGTAACGTTGTTGAC+TGG | - | chr5_3:32177743-32177762 | Msa0808230:CDS | 30.0% | |
| CTTGAACAAAATGAGGAACA+TGG | - | chr5_3:32173083-32173102 | Msa0808230:intron | 35.0% | |
| TCAAATATCATATCCAAGCG+AGG | + | chr5_3:32173134-32173153 | None:intergenic | 35.0% | |
| GGATATGATATTTGAATCCG+AGG | - | chr5_3:32173139-32173158 | Msa0808230:intron | 35.0% | |
| AGATTCACATGCTACAAAGA+AGG | - | chr5_3:32173266-32173285 | Msa0808230:intron | 35.0% | |
| TCGAAAGATAGGGAAATACA+AGG | - | chr5_3:32173382-32173401 | Msa0808230:intron | 35.0% | |
| ATCATGTGAACATACTCTTG+TGG | + | chr5_3:32173446-32173465 | None:intergenic | 35.0% | |
| GATTTAAGGAAAAATGGGCA+TGG | - | chr5_3:32173545-32173564 | Msa0808230:intron | 35.0% | |
| ! | GCCTTCTTCATTTTCAATCT+AGG | + | chr5_3:32173760-32173779 | None:intergenic | 35.0% |
| !!! | TTTTGGGGTGTAAACATTTC+CGG | + | chr5_3:32173800-32173819 | None:intergenic | 35.0% |
| !! | TGCATAAAGGTGTTGAAAGA+AGG | - | chr5_3:32173865-32173884 | Msa0808230:intron | 35.0% |
| TGTAAAAGAGAGGACAGTTA+TGG | - | chr5_3:32173915-32173934 | Msa0808230:intron | 35.0% | |
| GTAAAAGAGAGGACAGTTAT+GGG | - | chr5_3:32173916-32173935 | Msa0808230:intron | 35.0% | |
| !! | TAGTCATGCTTTGAAAGTGT+TGG | - | chr5_3:32174000-32174019 | Msa0808230:intron | 35.0% |
| CGCTTTAGTATATAGTGTTC+AGG | + | chr5_3:32174049-32174068 | None:intergenic | 35.0% | |
| GGAAGTAATCAAGATTGGAA+AGG | - | chr5_3:32174091-32174110 | Msa0808230:intron | 35.0% | |
| TTGGCCAATTTAATCATTGG+AGG | + | chr5_3:32174175-32174194 | None:intergenic | 35.0% | |
| CTGTTGGCCAATTTAATCAT+TGG | + | chr5_3:32174178-32174197 | None:intergenic | 35.0% | |
| TATGTTGGCCAAAAAATGTG+TGG | - | chr5_3:32174270-32174289 | Msa0808230:intron | 35.0% | |
| !!! | TTCTCCATCCACACATTTTT+TGG | + | chr5_3:32174281-32174300 | None:intergenic | 35.0% |
| TGATAAAACTCATAACAGCG+TGG | - | chr5_3:32174339-32174358 | Msa0808230:intron | 35.0% | |
| TTAGTGGAACGTGAACAATT+TGG | + | chr5_3:32174397-32174416 | None:intergenic | 35.0% | |
| GAAATTGAATTGAGGTCAAG+TGG | + | chr5_3:32174612-32174631 | None:intergenic | 35.0% | |
| AATGTCAAACTGCAATCCAA+GGG | - | chr5_3:32174695-32174714 | Msa0808230:intron | 35.0% | |
| AATGTCAAGCTACAATCCAA+GGG | - | chr5_3:32174749-32174768 | Msa0808230:intron | 35.0% | |
| !! | TGAATTCCGTTGGTTTCTAT+TGG | - | chr5_3:32175062-32175081 | Msa0808230:intron | 35.0% |
| TTACGGATACAAGTTTCATG+TGG | + | chr5_3:32175341-32175360 | None:intergenic | 35.0% | |
| CTAAAACTTACTTATGCTGC+TGG | + | chr5_3:32175530-32175549 | None:intergenic | 35.0% | |
| CACCCAAAAATAATCCTTTC+AGG | + | chr5_3:32175739-32175758 | None:intergenic | 35.0% | |
| GTCTCCATGAATCATCAATT+CGG | - | chr5_3:32175846-32175865 | Msa0808230:intron | 35.0% | |
| ! | TTCCTCCTTTTTACAGTGTT+AGG | + | chr5_3:32175873-32175892 | None:intergenic | 35.0% |
| ATTCAGAAGAGAGAGAAGAA+CGG | - | chr5_3:32175954-32175973 | Msa0808230:intron | 35.0% | |
| TAACGAAGAAGATGAAGGAA+AGG | - | chr5_3:32175985-32176004 | Msa0808230:intron | 35.0% | |
| ! | AAACTGGAGCAATTTTGTAC+TGG | - | chr5_3:32176173-32176192 | Msa0808230:intron | 35.0% |
| GTTATCAACAAGAGCTTCAA+CGG | - | chr5_3:32176211-32176230 | Msa0808230:intron | 35.0% | |
| ATTAGAGACAAGATCAACAG+AGG | - | chr5_3:32176234-32176253 | Msa0808230:intron | 35.0% | |
| GACCTAATCAAGAAATTAGC+CGG | + | chr5_3:32176312-32176331 | None:intergenic | 35.0% | |
| TCTAGGGATAGATGATTGTT+AGG | - | chr5_3:32176536-32176555 | Msa0808230:CDS | 35.0% | |
| GGAGAATAATTGTAGAGACT+AGG | - | chr5_3:32176697-32176716 | Msa0808230:intron | 35.0% | |
| !! | CGGCAAAAGCGTTAAAATAA+AGG | + | chr5_3:32176869-32176888 | None:intergenic | 35.0% |
| ! | GGAGTGTTTCAATTTCTACT+CGG | + | chr5_3:32176889-32176908 | None:intergenic | 35.0% |
| CATTCTAGTGACTCTTTCTA+GGG | + | chr5_3:32176992-32177011 | None:intergenic | 35.0% | |
| ACATTCTAGTGACTCTTTCT+AGG | + | chr5_3:32176993-32177012 | None:intergenic | 35.0% | |
| ATGAAGATCATGTACAAGCA+CGG | + | chr5_3:32177107-32177126 | None:intergenic | 35.0% | |
| AAGCATGGTTAAGGAAAGAA+AGG | + | chr5_3:32177167-32177186 | None:intergenic | 35.0% | |
| AAAGAAGGGATTTAGAAGCA+TGG | + | chr5_3:32177182-32177201 | None:intergenic | 35.0% | |
| TTATAGTAGAGGACAATGAG+GGG | - | chr5_3:32177362-32177381 | Msa0808230:intron | 35.0% | |
| CATATCAATGTCGTCTAAGA+TGG | - | chr5_3:32177389-32177408 | Msa0808230:intron | 35.0% | |
| GTAGATAGATGGCACAAATT+TGG | - | chr5_3:32177448-32177467 | Msa0808230:CDS | 35.0% | |
| !! | TAAGCTGAAATTTGTTACCG+AGG | - | chr5_3:32177480-32177499 | Msa0808230:CDS | 35.0% |
| ATCAACTGACATTCTTACCT+CGG | + | chr5_3:32177500-32177519 | None:intergenic | 35.0% | |
| TAAGACTTTGACGTAAGTTC+TGG | + | chr5_3:32177536-32177555 | None:intergenic | 35.0% | |
| GAAAACGTCAATTCATTCAG+GGG | + | chr5_3:32177563-32177582 | None:intergenic | 35.0% | |
| CGAAAACGTCAATTCATTCA+GGG | + | chr5_3:32177564-32177583 | None:intergenic | 35.0% | |
| !! | CTATTTCTATCCCCAAATGT+CGG | - | chr5_3:32177667-32177686 | Msa0808230:intron | 35.0% |
| TTGTCTACCAAAATAGGCGA+CGG | + | chr5_3:32173035-32173054 | None:intergenic | 40.0% | |
| AAATTCGTAAGCAGCTACCT+CGG | + | chr5_3:32173159-32173178 | None:intergenic | 40.0% | |
| ACAAAAGACATCAACCGACT+GGG | - | chr5_3:32173303-32173322 | Msa0808230:intron | 40.0% | |
| AATGGGCATGGACTTATGTT+CGG | - | chr5_3:32173557-32173576 | Msa0808230:intron | 40.0% | |
| ! | CACTTTAAAAGGGCTGTCAA+TGG | - | chr5_3:32173685-32173704 | Msa0808230:intron | 40.0% |
| AAAGGGCTGTCAATGGTAAA+CGG | - | chr5_3:32173692-32173711 | Msa0808230:intron | 40.0% | |
| GATATTCCTCGTATTCCTCT+TGG | + | chr5_3:32173837-32173856 | None:intergenic | 40.0% | |
| GACAGTTATGGGAAATCCTA+CGG | - | chr5_3:32173927-32173946 | Msa0808230:intron | 40.0% | |
| GGTTGGGAAGTAATCAAGAT+TGG | - | chr5_3:32174086-32174105 | Msa0808230:intron | 40.0% | |
| TGAAAGCCCATTTCATGAAG+CGG | - | chr5_3:32174134-32174153 | Msa0808230:intron | 40.0% | |
| ACTGTACCGCTTCATGAAAT+GGG | + | chr5_3:32174143-32174162 | None:intergenic | 40.0% | |
| !! | ATGAGATTCTGAAGCTCTGT+TGG | + | chr5_3:32174194-32174213 | None:intergenic | 40.0% |
| GCTGGACTCTTCATAAACTT+TGG | + | chr5_3:32174236-32174255 | None:intergenic | 40.0% | |
| TTGGCCAAAAAATGTGTGGA+TGG | - | chr5_3:32174274-32174293 | Msa0808230:intron | 40.0% | |
| AGAATCAAGTGGAATGGTTC+AGG | - | chr5_3:32174297-32174316 | Msa0808230:intron | 40.0% | |
| GTTCAGGTAACCATATCACT+TGG | - | chr5_3:32174313-32174332 | Msa0808230:intron | 40.0% | |
| ! | TATGCCTTTTGCCTTGACAA+CGG | + | chr5_3:32174368-32174387 | None:intergenic | 40.0% |
| ATTGCAGTTTGACATTCCGT+TGG | + | chr5_3:32174691-32174710 | None:intergenic | 40.0% | |
| GAATGTCAAACTGCAATCCA+AGG | - | chr5_3:32174694-32174713 | Msa0808230:intron | 40.0% | |
| CAATGTCAAGCTACAATCCA+AGG | - | chr5_3:32174748-32174767 | Msa0808230:intron | 40.0% | |
| ATGTCAAGCTACAATCCAAG+GGG | - | chr5_3:32174750-32174769 | Msa0808230:intron | 40.0% | |
| TTTGTCTTCATTGTACCCCT+TGG | + | chr5_3:32174768-32174787 | None:intergenic | 40.0% | |
| CTGTTTCATCTGGTCATTTC+AGG | - | chr5_3:32174999-32175018 | Msa0808230:intron | 40.0% | |
| GTTATGGCTATGAATTCCGT+TGG | - | chr5_3:32175052-32175071 | Msa0808230:intron | 40.0% | |
| TTGCTGATACAAGTTCCATG+TGG | + | chr5_3:32175494-32175513 | None:intergenic | 40.0% | |
| ! | AATCTTCAGAGGCATACATG+AGG | - | chr5_3:32175696-32175715 | Msa0808230:intron | 40.0% |
| ! | AAGCATATCTGAAGCCTGAA+AGG | - | chr5_3:32175722-32175741 | Msa0808230:intron | 40.0% |
| ! | AGGACCGAATTGATGATTCA+TGG | + | chr5_3:32175853-32175872 | None:intergenic | 40.0% |
| TCGGTCCTAACACTGTAAAA+AGG | - | chr5_3:32175865-32175884 | Msa0808230:intron | 40.0% | |
| GTCCTAACACTGTAAAAAGG+AGG | - | chr5_3:32175868-32175887 | Msa0808230:intron | 40.0% | |
| CGTACTAACGAAGAAGATGA+AGG | - | chr5_3:32175980-32175999 | Msa0808230:intron | 40.0% | |
| AAGAAGATGAAGGAAAGGAG+AGG | - | chr5_3:32175990-32176009 | Msa0808230:intron | 40.0% | |
| AGAAGATGAAGGAAAGGAGA+GGG | - | chr5_3:32175991-32176010 | Msa0808230:intron | 40.0% | |
| ! | CACACATCGGTTACATTAAC+AGG | - | chr5_3:32176150-32176169 | Msa0808230:intron | 40.0% |
| CGGTTACATTAACAGGAAAC+TGG | - | chr5_3:32176157-32176176 | Msa0808230:intron | 40.0% | |
| AGATCAACAGAGGATGCTTT+CGG | - | chr5_3:32176244-32176263 | Msa0808230:intron | 40.0% | |
| GTCCGGCTAATTTCTTGATT+AGG | - | chr5_3:32176307-32176326 | Msa0808230:intron | 40.0% | |
| ACTGACCCTAGCTATTGAAT+TGG | - | chr5_3:32176481-32176500 | Msa0808230:CDS | 40.0% | |
| ! | TTAATCTAACGGGTCAGTCT+AGG | - | chr5_3:32176519-32176538 | Msa0808230:CDS | 40.0% |
| ! | TAATCTAACGGGTCAGTCTA+GGG | - | chr5_3:32176520-32176539 | Msa0808230:CDS | 40.0% |
| ! | TAGAAGTGTGTTCTGAGTCA+AGG | - | chr5_3:32176635-32176654 | Msa0808230:CDS | 40.0% |
| ! | AGAAGTGTGTTCTGAGTCAA+GGG | - | chr5_3:32176636-32176655 | Msa0808230:CDS | 40.0% |
| !! | TGTTAATTTGTCGTGGGTCT+AGG | - | chr5_3:32176676-32176695 | Msa0808230:intron | 40.0% |
| AGAAATTGAAACACTCCCTG+TGG | - | chr5_3:32176892-32176911 | Msa0808230:intron | 40.0% | |
| !!! | AGTGACTCTTTCTAGGGTTT+TGG | + | chr5_3:32176986-32177005 | None:intergenic | 40.0% |
| AGTCACTAGAATGTTCCACA+AGG | - | chr5_3:32176999-32177018 | Msa0808230:CDS | 40.0% | |
| AAGGATCCAAGCATGATTCA+TGG | + | chr5_3:32177148-32177167 | None:intergenic | 40.0% | |
| ! | GGGATTTAGAAGCATGGTTA+AGG | + | chr5_3:32177176-32177195 | None:intergenic | 40.0% |
| CAAGTCTTGGAGCAAAAGAA+GGG | + | chr5_3:32177196-32177215 | None:intergenic | 40.0% | |
| TCAAGTCTTGGAGCAAAAGA+AGG | + | chr5_3:32177197-32177216 | None:intergenic | 40.0% | |
| TATAGTAGAGGACAATGAGG+GGG | - | chr5_3:32177363-32177382 | Msa0808230:intron | 40.0% | |
| AGATGGTCGACTGTAAAGAA+TGG | - | chr5_3:32177406-32177425 | Msa0808230:intron | 40.0% | |
| !! | TAAGTTCTGGAACGATCAGA+GGG | + | chr5_3:32177523-32177542 | None:intergenic | 40.0% |
| GCGAAAACGTCAATTCATTC+AGG | + | chr5_3:32177565-32177584 | None:intergenic | 40.0% | |
| ! | CATGAATCCGTCGCCTATTT+TGG | - | chr5_3:32173025-32173044 | Msa0808230:intron | 45.0% |
| GACAAAAGACATCAACCGAC+TGG | - | chr5_3:32173302-32173321 | Msa0808230:intron | 45.0% | |
| CAAAAGACATCAACCGACTG+GGG | - | chr5_3:32173304-32173323 | Msa0808230:intron | 45.0% | |
| GTCTACGGCAGAAACTAGAA+CGG | - | chr5_3:32173328-32173347 | Msa0808230:intron | 45.0% | |
| TCTACGGCAGAAACTAGAAC+GGG | - | chr5_3:32173329-32173348 | Msa0808230:intron | 45.0% | |
| CATACTCTTGTGGCTGAAGA+AGG | + | chr5_3:32173436-32173455 | None:intergenic | 45.0% | |
| GTTCGGAAAACATTCACTGC+AGG | - | chr5_3:32173574-32173593 | Msa0808230:intron | 45.0% | |
| GGAATTCCAAGAGGAATACG+AGG | - | chr5_3:32173828-32173847 | Msa0808230:intron | 45.0% | |
| ! | CGCAAGAAACTTTTTGCCGT+AGG | + | chr5_3:32173946-32173965 | None:intergenic | 45.0% |
| ACTAAAGCGATGGACAAGAG+AGG | - | chr5_3:32174060-32174079 | Msa0808230:intron | 45.0% | |
| CACTGTACCGCTTCATGAAA+TGG | + | chr5_3:32174144-32174163 | None:intergenic | 45.0% | |
| TGTGTGGATGGAGAATCAAG+TGG | - | chr5_3:32174286-32174305 | Msa0808230:intron | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | - | chr5_3:32174291-32174310 | Msa0808230:intron | 45.0% | |
| GAAACCGTTGTCAAGGCAAA+AGG | - | chr5_3:32174361-32174380 | Msa0808230:intron | 45.0% | |
| CAATCAAGTCAAGCTGCCAA+CGG | - | chr5_3:32174672-32174691 | Msa0808230:intron | 45.0% | |
| CCAGATGAAACAGCACGAAT+AGG | + | chr5_3:32174992-32175011 | None:intergenic | 45.0% | |
| !! | CCTATTCGTGCTGTTTCATC+TGG | - | chr5_3:32174989-32175008 | Msa0808230:intron | 45.0% |
| ! | ATCTGGTCATTTCAGGTGCT+TGG | - | chr5_3:32175006-32175025 | Msa0808230:intron | 45.0% |
| ! | TCTGGTCATTTCAGGTGCTT+GGG | - | chr5_3:32175007-32175026 | Msa0808230:intron | 45.0% |
| ACCAGGTTGTGGCATAGTTA+TGG | - | chr5_3:32175036-32175055 | Msa0808230:intron | 45.0% | |
| AACACGTCTACACCAATCAC+AGG | - | chr5_3:32175650-32175669 | Msa0808230:intron | 45.0% | |
| GCATTTGCAAGTCCTGTGAT+TGG | + | chr5_3:32175665-32175684 | None:intergenic | 45.0% | |
| ! | GAAATCGATGAGAGCGTGTT+TGG | + | chr5_3:32175822-32175841 | None:intergenic | 45.0% |
| GGAGGAAATAGCGAAGATGA+CGG | - | chr5_3:32175886-32175905 | Msa0808230:intron | 45.0% | |
| GAAGATGAAGGAAAGGAGAG+GGG | - | chr5_3:32175992-32176011 | Msa0808230:intron | 45.0% | |
| GTGGCAGGGTCAAATTTCAA+CGG | + | chr5_3:32176126-32176145 | None:intergenic | 45.0% | |
| TGTAACCGATGTGTGACATG+TGG | + | chr5_3:32176145-32176164 | None:intergenic | 45.0% | |
| GATCAACAGAGGATGCTTTC+GGG | - | chr5_3:32176245-32176264 | Msa0808230:intron | 45.0% | |
| AACGGTTACGAACTCACCTA+AGG | - | chr5_3:32176593-32176612 | Msa0808230:CDS | 45.0% | |
| ACGGTTACGAACTCACCTAA+GGG | - | chr5_3:32176594-32176613 | Msa0808230:CDS | 45.0% | |
| ACGAACTCACCTAAGGGATT+AGG | - | chr5_3:32176600-32176619 | Msa0808230:CDS | 45.0% | |
| CGAACTCACCTAAGGGATTA+GGG | - | chr5_3:32176601-32176620 | Msa0808230:CDS | 45.0% | |
| AATCGGCCATGAATCATGCT+TGG | - | chr5_3:32177139-32177158 | Msa0808230:intron | 45.0% | |
| GACTGTAAAGAATGGCTCGA+AGG | - | chr5_3:32177414-32177433 | Msa0808230:intron | 45.0% | |
| !! | GTAAGTTCTGGAACGATCAG+AGG | + | chr5_3:32177524-32177543 | None:intergenic | 45.0% |
| AGTGTCAACGACCGACATTT+GGG | + | chr5_3:32177681-32177700 | None:intergenic | 45.0% | |
| AAGTGTCAACGACCGACATT+TGG | + | chr5_3:32177682-32177701 | None:intergenic | 45.0% | |
| !! | CAAATAAAAATAAAAATAAA+TGG | + | chr5_3:32176796-32176815 | None:intergenic | 5.0% |
| TGACGACATCAAACCTCGCT+TGG | - | chr5_3:32173118-32173137 | Msa0808230:intron | 50.0% | |
| CTACGGCAGAAACTAGAACG+GGG | - | chr5_3:32173330-32173349 | Msa0808230:intron | 50.0% | |
| AACGGGGTGTAATGCACGTA+TGG | - | chr5_3:32173346-32173365 | Msa0808230:intron | 50.0% | |
| ACGGGGTGTAATGCACGTAT+GGG | - | chr5_3:32173347-32173366 | Msa0808230:intron | 50.0% | |
| ACTCTTGTGGCTGAAGAAGG+TGG | + | chr5_3:32173433-32173452 | None:intergenic | 50.0% | |
| CTCTCATCGTCGCATATCTG+AGG | - | chr5_3:32173469-32173488 | Msa0808230:intron | 50.0% | |
| GGGTGTAAACATTTCCGGCT+TGG | + | chr5_3:32173795-32173814 | None:intergenic | 50.0% | |
| ATGGACAAGAGAGGCAAGGT+TGG | - | chr5_3:32174069-32174088 | Msa0808230:intron | 50.0% | |
| TGGACAAGAGAGGCAAGGTT+GGG | - | chr5_3:32174070-32174089 | Msa0808230:intron | 50.0% | |
| CTTCGCTTGATTGTGTCCCT+TGG | + | chr5_3:32174714-32174733 | None:intergenic | 50.0% | |
| ! | CTGGTCATTTCAGGTGCTTG+GGG | - | chr5_3:32175008-32175027 | Msa0808230:intron | 50.0% |
| ! | TGGTCATTTCAGGTGCTTGG+GGG | - | chr5_3:32175009-32175028 | Msa0808230:intron | 50.0% |
| GCCATAACTATGCCACAACC+TGG | + | chr5_3:32175040-32175059 | None:intergenic | 50.0% | |
| ! | AAGATGACGGCGAGTCAAAG+AGG | - | chr5_3:32175899-32175918 | Msa0808230:intron | 50.0% |
| ! | AGATGACGGCGAGTCAAAGA+GGG | - | chr5_3:32175900-32175919 | Msa0808230:intron | 50.0% |
| CAGAAGAGAGAGAAGAACGG+CGG | - | chr5_3:32175957-32175976 | Msa0808230:intron | 50.0% | |
| GGTGAGTTCGTAACCGTTGA+AGG | + | chr5_3:32176591-32176610 | None:intergenic | 50.0% | |
| CTACAGCACCCTAATCCCTT+AGG | + | chr5_3:32176612-32176631 | None:intergenic | 50.0% | |
| ATGTTCCACAAGGCAACCCA+TGG | - | chr5_3:32177009-32177028 | Msa0808230:CDS | 50.0% | |
| TGTTCCACAAGGCAACCCAT+GGG | - | chr5_3:32177010-32177029 | Msa0808230:CDS | 50.0% | |
| ! | AAGGCAACCCATGGGCTTTT+AGG | - | chr5_3:32177018-32177037 | Msa0808230:CDS | 50.0% |
| GCATGATTCATGGCCGATTG+AGG | + | chr5_3:32177138-32177157 | None:intergenic | 50.0% | |
| GTGTCAACGACCGACATTTG+GGG | + | chr5_3:32177680-32177699 | None:intergenic | 50.0% | |
| GTCGGTCGTTGACACTTGTA+TGG | - | chr5_3:32177685-32177704 | Msa0808230:CDS | 50.0% | |
| TCAACCGACTGGGGAGTCTA+CGG | - | chr5_3:32173313-32173332 | Msa0808230:intron | 55.0% | |
| AGCGATGGACAAGAGAGGCA+AGG | - | chr5_3:32174065-32174084 | Msa0808230:intron | 55.0% | |
| CAGCGTGGAAACCGTTGTCA+AGG | - | chr5_3:32174354-32174373 | Msa0808230:intron | 55.0% | |
| TTGGGGGTTTCACCAGGTTG+TGG | - | chr5_3:32175025-32175044 | Msa0808230:intron | 55.0% | |
| ! | GATGACGGCGAGTCAAAGAG+GGG | - | chr5_3:32175901-32175920 | Msa0808230:intron | 55.0% |
| AAGAGGGGAACCGGAAATCG+TGG | - | chr5_3:32175916-32175935 | Msa0808230:intron | 55.0% | |
| CAGTGTTCCGCCACGATTTC+CGG | + | chr5_3:32175929-32175948 | None:intergenic | 55.0% | |
| GATGAAGGAAAGGAGAGGGG+CGG | - | chr5_3:32175995-32176014 | Msa0808230:intron | 55.0% | |
| CGGAGAGGAGTGAAGAAGGA+GGG | - | chr5_3:32176031-32176050 | Msa0808230:intron | 55.0% | |
| AGAGGAGTGAAGAAGGAGGG+CGG | - | chr5_3:32176034-32176053 | Msa0808230:intron | 55.0% | |
| CCGATGTGTGACATGTGGCA+GGG | + | chr5_3:32176140-32176159 | None:intergenic | 55.0% | |
| CCCTGCCACATGTCACACAT+CGG | - | chr5_3:32176137-32176156 | Msa0808230:intron | 55.0% | |
| ACCGATGTGTGACATGTGGC+AGG | + | chr5_3:32176141-32176160 | None:intergenic | 55.0% | |
| ! | AAAGCCCATGGGTTGCCTTG+TGG | + | chr5_3:32177017-32177036 | None:intergenic | 55.0% |
| TGTAGGAACGACCATGCACG+CGG | + | chr5_3:32177074-32177093 | None:intergenic | 55.0% | |
| CGTGCATGGTCGTTCCTACA+GGG | - | chr5_3:32177074-32177093 | Msa0808230:CDS | 55.0% | |
| TCTGCCGTAGACTCCCCAGT+CGG | + | chr5_3:32173320-32173339 | None:intergenic | 60.0% | |
| GCTCGAATGCTCGTCCAAGC+CGG | - | chr5_3:32173778-32173797 | Msa0808230:intron | 60.0% | |
| AGGTGCTTGGGGGTTTCACC+AGG | - | chr5_3:32175019-32175038 | Msa0808230:intron | 60.0% | |
| GGCGAGTCAAAGAGGGGAAC+CGG | - | chr5_3:32175907-32175926 | Msa0808230:intron | 60.0% | |
| AGGGGAACCGGAAATCGTGG+CGG | - | chr5_3:32175919-32175938 | Msa0808230:intron | 60.0% | |
| ACGGCGGAGAGGAGTGAAGA+AGG | - | chr5_3:32176027-32176046 | Msa0808230:intron | 60.0% | |
| GCGGAGAGGAGTGAAGAAGG+AGG | - | chr5_3:32176030-32176049 | Msa0808230:intron | 60.0% | |
| GCGTGCATGGTCGTTCCTAC+AGG | - | chr5_3:32177073-32177092 | Msa0808230:CDS | 60.0% | |
| AGGAAAGGAGAGGGGCGGAG+AGG | - | chr5_3:32176000-32176019 | Msa0808230:intron | 65.0% | |
| AGAGGGGCGGAGAGGAGTGA+CGG | - | chr5_3:32176008-32176027 | Msa0808230:intron | 65.0% | |
| GGTGTCTGTAGCCGCGTGCA+TGG | - | chr5_3:32177060-32177079 | Msa0808230:CDS | 65.0% | |
| GGAGAGGAGTGACGGCGGAG+AGG | - | chr5_3:32176016-32176035 | Msa0808230:intron | 70.0% | |
| AGCACGGTCGTGCGCCCTGT+AGG | + | chr5_3:32177091-32177110 | None:intergenic | 70.0% | |
| GGGGCGGAGAGGAGTGACGG+CGG | - | chr5_3:32176011-32176030 | Msa0808230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 32173021 | 32177856 | 32173021 | ID=Msa0808230;Name=Msa0808230 |
| chr5_3 | mRNA | 32173021 | 32177856 | 32173021 | ID=Msa0808230-mRNA-1;Parent=Msa0808230;Name=Msa0808230-mRNA-1;_AED=0.25;_eAED=0.25;_QI=5|0|0|0.8|0|0|5|0|250 |
| chr5_3 | exon | 32177668 | 32177856 | 32177668 | ID=Msa0808230-mRNA-1:exon:10585;Parent=Msa0808230-mRNA-1 |
| chr5_3 | exon | 32177423 | 32177655 | 32177423 | ID=Msa0808230-mRNA-1:exon:10584;Parent=Msa0808230-mRNA-1 |
| chr5_3 | exon | 32176991 | 32177099 | 32176991 | ID=Msa0808230-mRNA-1:exon:10583;Parent=Msa0808230-mRNA-1 |
| chr5_3 | exon | 32176471 | 32176671 | 32176471 | ID=Msa0808230-mRNA-1:exon:10582;Parent=Msa0808230-mRNA-1 |
| chr5_3 | exon | 32173021 | 32173043 | 32173021 | ID=Msa0808230-mRNA-1:exon:10581;Parent=Msa0808230-mRNA-1 |
| chr5_3 | five_prime_UTR | 32177852 | 32177856 | 32177852 | ID=Msa0808230-mRNA-1:five_prime_utr;Parent=Msa0808230-mRNA-1 |
| chr5_3 | CDS | 32177668 | 32177851 | 32177668 | ID=Msa0808230-mRNA-1:cds;Parent=Msa0808230-mRNA-1 |
| chr5_3 | CDS | 32177423 | 32177655 | 32177423 | ID=Msa0808230-mRNA-1:cds;Parent=Msa0808230-mRNA-1 |
| chr5_3 | CDS | 32176991 | 32177099 | 32176991 | ID=Msa0808230-mRNA-1:cds;Parent=Msa0808230-mRNA-1 |
| chr5_3 | CDS | 32176471 | 32176671 | 32176471 | ID=Msa0808230-mRNA-1:cds;Parent=Msa0808230-mRNA-1 |
| chr5_3 | CDS | 32173021 | 32173043 | 32173021 | ID=Msa0808230-mRNA-1:cds;Parent=Msa0808230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
