AlfalfaGEDB | Msa0808290

M. sativa cultivar zhongmu-4 / Msa0808290

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808290	XP_039689000.1	85.615	723	70	2	28	716	49	771	0.0	1271

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808290	sp\|Q9SZL8\|FRS5_ARATH	35.233	579	365	6	61	637	70	640	2.60e-112	372
Msa0808290	sp\|Q9SZL8\|FRS5_ARATH	27.200	250	137	8	759	972	113	353	1.68e-12	75.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808290	A2Q1A1	59.123	707	243	6	53	716	81	784	0.0	840

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TFs/TRs:

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Gene ID	Type	Classification
Msa0808290	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808290	MtrunA17_Chr1g0198761	64.890	319	47	3	718	971	16	334	7.59e-127	407
Msa0808290	MtrunA17_Chr1g0198761	28.035	692	430	17	67	713	50	718	2.20e-68	245
Msa0808290	MtrunA17_Chr1g0198761	72.932	133	34	1	974	1106	621	751	2.77e-50	191
Msa0808290	MtrunA17_Chr5g0431001	56.740	319	74	2	717	971	30	348	2.49e-109	352
Msa0808290	MtrunA17_Chr5g0431001	30.197	457	289	11	45	482	38	483	1.21e-48	181
Msa0808290	MtrunA17_Chr5g0448761	34.549	576	363	8	61	630	57	624	6.81e-105	348
Msa0808290	MtrunA17_Chr5g0448761	25.000	240	143	6	759	964	100	336	4.08e-14	77.4
Msa0808290	MtrunA17_Chr2g0296781	33.888	661	379	17	70	690	3	645	4.59e-97	325
Msa0808290	MtrunA17_Chr2g0296781	26.415	212	115	6	790	968	63	266	9.60e-11	66.2
Msa0808290	MtrunA17_Chr1g0202341	33.506	579	372	9	56	632	43	610	1.93e-95	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808290	AT4G38180.1	35.233	579	365	6	61	637	70	640	2.64e-113	372
Msa0808290	AT4G38180.1	27.200	250	137	8	759	972	113	353	1.71e-13	75.9
Msa0808290	AT4G15090.1	32.582	577	370	10	59	630	46	608	1.92e-87	301
Msa0808290	AT4G15090.5	32.582	577	370	10	59	630	46	608	1.92e-87	301
Msa0808290	AT4G15090.3	32.582	577	370	10	59	630	46	608	1.92e-87	301
Msa0808290	AT4G15090.2	32.582	577	370	10	59	630	46	608	1.92e-87	301
Msa0808290	AT4G15090.4	32.582	577	370	10	59	630	46	608	1.92e-87	301
Msa0808290	AT2G27110.2	29.912	565	359	6	66	630	51	578	4.31e-83	290
Msa0808290	AT2G27110.1	29.912	565	359	6	66	630	51	578	4.31e-83	290
Msa0808290	AT2G27110.3	34.536	388	249	2	243	630	51	433	8.92e-79	274

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Find 182 sgRNAs with CRISPR-Local

Find 587 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATGTCGACCAAA+AGG	0.488122	5_3:-32257668	Msa0808290:CDS
AAAATAAGAAAGATGAAGAT+GGG	0.489609	5_3:-32263489	Msa0808290:CDS
AAAGGATCAAGGCTAAAAGG+AGG	0.688106	5_3:-32257650	Msa0808290:CDS
AAAGTCATTCAAGTGATTAA+AGG	0.328254	5_3:-32257779	Msa0808290:CDS
AAAGTGTCTTTGAAATATGT+TGG	0.433279	5_3:+32263799	None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG	0.339166	5_3:-32263936	Msa0808290:CDS
AAATAGTTGGACGGATTTGA+AGG	0.464793	5_3:-32263100	Msa0808290:intron
AAATATAACCACAATTAACT+TGG	0.486282	5_3:-32259478	Msa0808290:CDS
AAATGAGTTTGAAGAGACTT+GGG	0.582686	5_3:-32263899	Msa0808290:CDS
AAATTGTGATGATGAATTAA+AGG	0.328661	5_3:-32264979	Msa0808290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAAGAATGAAGATTCAAG+AGG	+	chr5_3:32257163-32257182	None:intergenic	30.0%
TGAAGAATTGTCAAGACTTT+GGG	+	chr5_3:32257189-32257208	None:intergenic	30.0%
TTGAAGAATTGTCAAGACTT+TGG	+	chr5_3:32257190-32257209	None:intergenic	30.0%
CCCTTAAAATTGCTATGTTT+CGG	-	chr5_3:32257262-32257281	Msa0808290:intron	30.0%
CCTTAAAATTGCTATGTTTC+GGG	-	chr5_3:32257263-32257282	Msa0808290:intron	30.0%
CACGATTGGTAAATATCATA+TGG	-	chr5_3:32257591-32257610	Msa0808290:CDS	30.0%
TAAAGGATGTTTCAAATGAG+AGG	-	chr5_3:32258001-32258020	Msa0808290:intron	30.0%
AAAGGATGTTTCAAATGAGA+GGG	-	chr5_3:32258002-32258021	Msa0808290:intron	30.0%
TCATGCAAAATATGAGAGAA+AGG	+	chr5_3:32258150-32258169	None:intergenic	30.0%
TTCAAACTGATGTATTTGGT+TGG	+	chr5_3:32258225-32258244	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	32256999	32266976	32256999	ID=Msa0808290;Name=Msa0808290
chr5_3	mRNA	32256999	32266976	32256999	ID=Msa0808290-mRNA-1;Parent=Msa0808290;Name=Msa0808290-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0\|0\|0\|0.54\|1\|1\|11\|0\|1165
chr5_3	exon	32266827	32266976	32266827	ID=Msa0808290-mRNA-1:exon:10619;Parent=Msa0808290-mRNA-1
chr5_3	exon	32263213	32265018	32263213	ID=Msa0808290-mRNA-1:exon:10618;Parent=Msa0808290-mRNA-1
chr5_3	exon	32262924	32263116	32262924	ID=Msa0808290-mRNA-1:exon:10617;Parent=Msa0808290-mRNA-1
chr5_3	exon	32259748	32259854	32259748	ID=Msa0808290-mRNA-1:exon:10616;Parent=Msa0808290-mRNA-1
chr5_3	exon	32259123	32259643	32259123	ID=Msa0808290-mRNA-1:exon:10615;Parent=Msa0808290-mRNA-1
chr5_3	exon	32258912	32259035	32258912	ID=Msa0808290-mRNA-1:exon:10614;Parent=Msa0808290-mRNA-1
chr5_3	exon	32258204	32258282	32258204	ID=Msa0808290-mRNA-1:exon:10613;Parent=Msa0808290-mRNA-1
chr5_3	exon	32257520	32257857	32257520	ID=Msa0808290-mRNA-1:exon:10612;Parent=Msa0808290-mRNA-1
chr5_3	exon	32257341	32257423	32257341	ID=Msa0808290-mRNA-1:exon:10611;Parent=Msa0808290-mRNA-1
chr5_3	exon	32257148	32257195	32257148	ID=Msa0808290-mRNA-1:exon:10610;Parent=Msa0808290-mRNA-1
chr5_3	exon	32256999	32257047	32256999	ID=Msa0808290-mRNA-1:exon:10609;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32266827	32266976	32266827	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32263213	32265018	32263213	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32262924	32263116	32262924	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32259748	32259854	32259748	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32259123	32259643	32259123	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32258912	32259035	32258912	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32258204	32258282	32258204	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32257520	32257857	32257520	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32257341	32257423	32257341	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32257148	32257195	32257148	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1
chr5_3	CDS	32256999	32257047	32256999	ID=Msa0808290-mRNA-1:cds;Parent=Msa0808290-mRNA-1

Gene Sequence

>Msa0808290

ATGCCCAAGGCGCATGGTAATGCAATTCCATGCCCTAGGCGCATTCTTGTGTGCTTTCGGGCCCAATTTCTCCAATCTTCGTCGTTTTTAGGTCTTCGTCTTCAAATAACTTGCCTCAGAACTTCGGAACATAATTCCTCCATATATAAAGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGGCTACGATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATACGCACTCTCTGTCGGATTTAGTGTGCGTTCATCATCATCGATTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTTCTCGAAAGAGGGTTATTCGCCGAATAAGAAGGATGGTAAAGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGATGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATAAAAGCCATACATATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGTCTGCAAGGAAAGTGAATTCAGTTCACAAAAGCTTATTACATGCATGTAGTAGAGCAAATATAGGAACTTCAAAAGCTTTCCACTTATTAAAAGAACAGTGTTGGGGTTATGAAAATGTTGGATGCACGCAGCGAGATCTTCAAAACTATTCCAGAGATTTAAAGACTTTGAATAAAGATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGGAAGCAAGAAGTTAATCCATGCTTTTATTATGCGTATGAGGTAGGTGAAGAATGCCGATTGAAGCATGTTTTTTGGGAAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACGTATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTCGGCGTAGGACTTATAACAAATGAGAAAAGTGATTCATTCGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGCGGACATAAGCCAACTCTTATAATAACCGACCAAGATCCTTCCATGAAAGTGGCTATAGAAAATATGTTTGATGCTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTTTCCATGTATGATGAGGATGAATTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCGTTTTTGATGACAAGGTTTAAGTTAGAAAAGAATAAATGGTTGGCACATATGTTTGAGATTCGAAGCACGTGGATCCCAACATATTTCAAAGACACTTTTCTGGCAGGGATATTGAGAACAACATCAAGATCAGAAACTGAGAATTCTTTCTATGGTAATTTTCTAAATCCAAATGTTAACTTGGTTGAATTTTGGATGAGATTTGATTCAGCAATAGAAGCGCAACGACATAAGGAGTTACTAGCTGATAATAACTCAATTCATTCTAAACCAAAACTATTGTTGGAACGTGGTATCGAGAGGCATGCAAGAGATGTGTATACTCGTGGGAACTTTTATATATTTCAACATGAATTATGGATTGCATGCGTGGATTGTGGGATTGAAAATAAGAAAGATGAAGATGGGATGGAAATATTTCATATATATGATAATAGTGAGATCAATGGTAAACTTCGAGAAGTTGTGTATAACTTGTCAAATCACAATGCAAATTGCTCATGTAAAATGTTTCAGGCTGAAGGAATACCTTGTAGACACATACTTTGTGTTTTAAAGGGAAAAAATTTCAATGAAATACCAAGTAAGTACATTGTGAATAGGTGGACTAAGTTTGCAAACAGAACACCTATTTTTGACATAGCTGACAATGTCTTGGAAGAAGACAGCAAACTCATTTCTGATTTGGACGGATTTGAAGGGAGTTCTAAGAGAACCAGGACAGATGATTTGATTCTTGGGTCCAATATTCCTGACGAAGTAGAAATCCTTCCACCAAAATTTGCAAAGACTAAAGGTAGTGGTAAAAGAATCAAAGGTGGCAAAGAGAAGGCTATTGAACAGCAACAAAAAAAAGCAAGACTTTGTAAGGCATGCGTATATGAAGATGATGATGTCATTGATTCTCTGACCTTTCAAGAGCCACAACATGGACCTTTGCCTCAAGCCAATCAAATTGATGATTCGGTTCCTTATGAAGGGAAGTCAGAGGATAATCCATTAGGCATTTATAAAAGAGAGTTTGTTTGTCATCGTGGTGGTTCTATTAGTCTACACAAAAATAATGAAGTGGAAGGTCAAAGAAAACGAAAGTCATCAAGATGTAATTGTGGTGCAAAATTGTTGGTAAATATAACCACAATTAACTTGGAGAACAAGTGGGTCATGAAATACTTCAATAATAATCATAACCATGAATTATTAGATGATAAAGAGGTTCAATTTCTTCCTGCTTATCGAAACATTTCAATTGTTGATCAAGATCGCATTCTTTTGTTGTCAAAAGCTGGTTGCTCTGTAAATTTAATAATAAGAGTGCTTAAGTTAGAGAAAGAAGTAGATGCAGGAAATCTACCATTTTTGGAGAAAGATAATAGGAATTTTATCCAATCTCAAAGTGGTGTTGGTAAAGAGTTCGATGCTTCAAATGTTATCAAATTATGTAAAAGTTTGAAAGATGTAGATGATGGATTTCAGTATGAATTTTCAATAGATGAGAATAACAAAATAAATCATTATGACATGCCACTTGGAATATGGGTTGGCATCGATAACCATGGAAATTCCATTTTCTTTGGTTGTGTTCTATTGCGAGATGAGAAGATTTCTACTTTTACATGGGCTATAAAGGTTGGGGTTGCTGTCAAGATTAGAAATCATGATGGTGAAGAAGCGAGAATGCGCCAAAAGTACCACAATCCTCGTATTAAAATTGAATCCTTAAAGACAAAATACCGAAAACAAGCTGCAACTAAAGAGTTAGAGAAAGTCATTCAAGTGATTAAAGGCATGCCTGAAATCCAAGAAAAGTTGGTGGATGTTGATTCTAAGGTTCGAAATAATGATGAATTGAATATTGGAAATCCTTTACCTTCAAAAACAAAATGTCGACCAAAAGGATCAAGGCTAAAAGGAGGAGTTAAAATTGCAAAGAAGACTCTTCATTGTCATGTTCTAAATTGCGGTGGAACTGATCATGACTCGCGAAATTGTTCAAATAAAAAGAAAAATATTGAAGCATTACCTTCTCAATCTCCTAATAAGCAAGAGGATGAAGGGTTGGAGAAAATCATCTTAATAATGAGGTCTGCTATACTATGTTGCAACAATGATTTCAACTTCCAGAGAAGAAGTGTTCAAAGACTTAACATGGCGTTGAGACTTGGAATGGTTCAGAGGGGTAGGGGTGGAAATAGGCTAGGCCGGGCCGGGCTTTGTAAGTCCTAA

Protein sequence

>Msa0808290

MPKAHGNAIPCPRRILVCFRAQFLQSSSFLGLRLQITCLRTSEHNSSIYKEYECVPNCDDELKATIGQVFDTLAEGKKIYEKYALSVGFSVRSSSSIIDKNGVKRWKYFVFSKEGYSPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWMGEGKYEIARFHKSHTYPLASPMKRPFLRSARKVNSVHKSLLHACSRANIGTSKAFHLLKEQCWGYENVGCTQRDLQNYSRDLKTLNKDSDAHVLIDYFRRKQEVNPCFYYAYEVGEECRLKHVFWEDGICRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKSDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIENMFDASTHRLCMWHIMKKVSEKVGVSMYDEDEFNKSFKSCVWGSETPNEFEETWAFLMTRFKLEKNKWLAHMFEIRSTWIPTYFKDTFLAGILRTTSRSETENSFYGNFLNPNVNLVEFWMRFDSAIEAQRHKELLADNNSIHSKPKLLLERGIERHARDVYTRGNFYIFQHELWIACVDCGIENKKDEDGMEIFHIYDNSEINGKLREVVYNLSNHNANCSCKMFQAEGIPCRHILCVLKGKNFNEIPSKYIVNRWTKFANRTPIFDIADNVLEEDSKLISDLDGFEGSSKRTRTDDLILGSNIPDEVEILPPKFAKTKGSGKRIKGGKEKAIEQQQKKARLCKACVYEDDDVIDSLTFQEPQHGPLPQANQIDDSVPYEGKSEDNPLGIYKREFVCHRGGSISLHKNNEVEGQRKRKSSRCNCGAKLLVNITTINLENKWVMKYFNNNHNHELLDDKEVQFLPAYRNISIVDQDRILLLSKAGCSVNLIIRVLKLEKEVDAGNLPFLEKDNRNFIQSQSGVGKEFDASNVIKLCKSLKDVDDGFQYEFSIDENNKINHYDMPLGIWVGIDNHGNSIFFGCVLLRDEKISTFTWAIKVGVAVKIRNHDGEEARMRQKYHNPRIKIESLKTKYRKQAATKELEKVIQVIKGMPEIQEKLVDVDSKVRNNDELNIGNPLPSKTKCRPKGSRLKGGVKIAKKTLHCHVLNCGGTDHDSRNCSNKKKNIEALPSQSPNKQEDEGLEKIILIMRSAILCCNNDFNFQRRSVQRLNMALRLGMVQRGRGGNRLGRAGLCKS*