Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0809890 | XP_024640663.1 | 85.366 | 328 | 38 | 1 | 44 | 371 | 9 | 326 | 0.0 | 573 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0809890 | sp|Q84WU6|ARFQ_ARATH | 40.673 | 327 | 130 | 6 | 74 | 348 | 20 | 334 | 7.64e-71 | 236 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0809890 | G7KAA1 | 89.140 | 221 | 24 | 0 | 44 | 264 | 9 | 229 | 2.84e-141 | 411 |
Gene ID | Type | Classification |
---|---|---|
Msa0809890 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0809890 | MtrunA17_Chr5g0425661 | 89.140 | 221 | 24 | 0 | 44 | 264 | 8 | 228 | 8.16e-145 | 410 |
Msa0809890 | MtrunA17_Chr5g0424931 | 57.478 | 341 | 99 | 4 | 70 | 372 | 16 | 348 | 8.09e-129 | 380 |
Msa0809890 | MtrunA17_Chr1g0178011 | 61.392 | 316 | 98 | 6 | 73 | 372 | 12 | 319 | 6.32e-122 | 360 |
Msa0809890 | MtrunA17_Chr5g0425261 | 56.467 | 317 | 109 | 8 | 73 | 372 | 12 | 316 | 1.27e-108 | 324 |
Msa0809890 | MtrunA17_Chr5g0424801 | 55.836 | 317 | 111 | 8 | 73 | 372 | 12 | 316 | 1.81e-108 | 323 |
Msa0809890 | MtrunA17_Chr5g0424741 | 54.203 | 345 | 114 | 7 | 70 | 372 | 9 | 351 | 9.77e-107 | 324 |
Msa0809890 | MtrunA17_Chr2g0289221 | 50.299 | 334 | 143 | 9 | 70 | 390 | 17 | 340 | 1.11e-98 | 298 |
Msa0809890 | MtrunA17_Chr5g0417211 | 50.755 | 331 | 138 | 10 | 63 | 379 | 3 | 322 | 5.99e-93 | 285 |
Msa0809890 | MtrunA17_Chr5g0417281 | 48.232 | 311 | 145 | 8 | 70 | 371 | 8 | 311 | 3.52e-87 | 273 |
Msa0809890 | MtrunA17_Chr5g0436761 | 49.359 | 312 | 140 | 10 | 73 | 372 | 12 | 317 | 3.59e-83 | 261 |
Msa0809890 | MtrunA17_Chr2g0277461 | 48.742 | 318 | 132 | 10 | 73 | 372 | 13 | 317 | 1.39e-82 | 259 |
Msa0809890 | MtrunA17_Chr2g0277531 | 47.619 | 315 | 133 | 13 | 73 | 371 | 20 | 318 | 1.50e-81 | 253 |
Msa0809890 | MtrunA17_Chr3g0115271 | 38.997 | 359 | 158 | 8 | 65 | 371 | 11 | 360 | 4.28e-70 | 231 |
Msa0809890 | MtrunA17_Chr2g0326761 | 36.842 | 361 | 150 | 8 | 73 | 371 | 11 | 355 | 4.36e-69 | 231 |
Msa0809890 | MtrunA17_Chr1g0199681 | 36.798 | 356 | 162 | 7 | 70 | 371 | 91 | 437 | 1.51e-65 | 221 |
Msa0809890 | MtrunA17_Chr1g0181211 | 34.734 | 357 | 171 | 7 | 73 | 371 | 27 | 379 | 1.05e-60 | 208 |
Msa0809890 | MtrunA17_Chr7g0264161 | 34.202 | 307 | 177 | 7 | 83 | 371 | 2 | 301 | 2.74e-57 | 189 |
Msa0809890 | MtrunA17_Chr4g0028971 | 33.799 | 358 | 171 | 10 | 73 | 371 | 12 | 362 | 3.87e-48 | 174 |
Msa0809890 | MtrunA17_Chr8g0385791 | 33.125 | 320 | 186 | 7 | 73 | 371 | 59 | 371 | 1.39e-45 | 167 |
Msa0809890 | MtrunA17_Chr5g0425651 | 81.818 | 88 | 16 | 0 | 284 | 371 | 1 | 88 | 2.47e-45 | 152 |
Msa0809890 | MtrunA17_Chr2g0282961 | 31.270 | 307 | 184 | 5 | 73 | 359 | 53 | 352 | 5.25e-45 | 164 |
Msa0809890 | MtrunA17_Chr2g0276781 | 32.710 | 321 | 187 | 7 | 73 | 372 | 23 | 335 | 1.31e-44 | 164 |
Msa0809890 | MtrunA17_Chr7g0264171 | 28.065 | 367 | 193 | 8 | 69 | 371 | 27 | 386 | 1.51e-44 | 162 |
Msa0809890 | MtrunA17_Chr8g0376771 | 32.919 | 322 | 187 | 10 | 72 | 371 | 22 | 336 | 1.24e-42 | 159 |
Msa0809890 | MtrunA17_Chr2g0285461 | 32.615 | 325 | 185 | 11 | 72 | 371 | 22 | 337 | 3.91e-42 | 158 |
Msa0809890 | MtrunA17_Chr4g0009751 | 31.250 | 320 | 192 | 7 | 73 | 372 | 19 | 330 | 9.97e-42 | 155 |
Msa0809890 | MtrunA17_Chr8g0346711 | 32.609 | 322 | 184 | 10 | 73 | 372 | 29 | 339 | 4.55e-41 | 154 |
Msa0809890 | MtrunA17_Chr3g0109391 | 31.385 | 325 | 189 | 9 | 72 | 371 | 25 | 340 | 8.13e-41 | 154 |
Msa0809890 | MtrunA17_Chr5g0433301 | 32.000 | 325 | 187 | 10 | 72 | 371 | 23 | 338 | 1.24e-40 | 153 |
Msa0809890 | MtrunA17_Chr7g0239061 | 31.776 | 321 | 189 | 10 | 73 | 372 | 14 | 325 | 2.81e-40 | 151 |
Msa0809890 | MtrunA17_Chr4g0070181 | 32.012 | 328 | 187 | 8 | 69 | 371 | 19 | 335 | 4.11e-40 | 152 |
Msa0809890 | MtrunA17_Chr2g0301251 | 30.878 | 353 | 200 | 10 | 44 | 371 | 2 | 335 | 6.63e-40 | 151 |
Msa0809890 | MtrunA17_Chr1g0156321 | 29.969 | 327 | 198 | 8 | 69 | 372 | 39 | 357 | 9.07e-38 | 145 |
Msa0809890 | MtrunA17_Chr4g0046371 | 27.619 | 315 | 167 | 5 | 73 | 345 | 38 | 333 | 2.01e-36 | 140 |
Msa0809890 | MtrunA17_Chr8g0389081 | 29.429 | 333 | 185 | 7 | 72 | 371 | 31 | 346 | 1.16e-35 | 139 |
Msa0809890 | MtrunA17_Chr2g0326281 | 28.698 | 338 | 202 | 8 | 73 | 372 | 56 | 392 | 4.33e-35 | 137 |
Msa0809890 | MtrunA17_Chr4g0029671 | 30.061 | 326 | 200 | 6 | 73 | 372 | 54 | 377 | 9.25e-35 | 136 |
Msa0809890 | MtrunA17_Chr5g0424791 | 45.946 | 148 | 69 | 4 | 122 | 269 | 15 | 151 | 6.75e-29 | 110 |
Msa0809890 | MtrunA17_Chr8g0356211 | 28.758 | 153 | 94 | 2 | 195 | 332 | 16 | 168 | 1.97e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0809890 | AT1G77850.2 | 40.673 | 327 | 130 | 6 | 74 | 348 | 20 | 334 | 7.46e-72 | 236 |
Msa0809890 | AT1G77850.1 | 40.673 | 327 | 130 | 6 | 74 | 348 | 20 | 334 | 7.77e-72 | 236 |
Msa0809890 | AT4G30080.1 | 35.311 | 354 | 165 | 9 | 73 | 371 | 19 | 363 | 6.05e-62 | 211 |
Msa0809890 | AT2G28350.2 | 35.135 | 370 | 151 | 10 | 73 | 371 | 10 | 361 | 7.43e-58 | 200 |
Msa0809890 | AT2G28350.1 | 35.135 | 370 | 151 | 10 | 73 | 371 | 10 | 361 | 7.63e-58 | 201 |
Msa0809890 | AT2G46530.1 | 33.127 | 323 | 183 | 8 | 72 | 372 | 20 | 331 | 1.92e-46 | 168 |
Msa0809890 | AT2G46530.3 | 33.127 | 323 | 183 | 8 | 72 | 372 | 41 | 352 | 1.96e-46 | 168 |
Msa0809890 | AT3G61830.1 | 32.609 | 322 | 186 | 7 | 72 | 372 | 24 | 335 | 4.53e-45 | 164 |
Msa0809890 | AT5G62000.4 | 32.407 | 324 | 185 | 10 | 73 | 372 | 61 | 374 | 6.11e-44 | 163 |
Msa0809890 | AT5G62000.2 | 32.407 | 324 | 185 | 10 | 73 | 372 | 61 | 374 | 7.17e-44 | 163 |
Msa0809890 | AT5G62000.5 | 32.407 | 324 | 185 | 10 | 73 | 372 | 61 | 374 | 7.17e-44 | 163 |
Msa0809890 | AT5G62000.3 | 32.407 | 324 | 185 | 10 | 73 | 372 | 61 | 374 | 7.17e-44 | 163 |
Msa0809890 | AT5G62000.1 | 32.407 | 324 | 185 | 10 | 73 | 372 | 61 | 374 | 7.17e-44 | 163 |
Msa0809890 | AT1G59750.4 | 31.056 | 322 | 191 | 8 | 73 | 372 | 22 | 334 | 7.58e-44 | 162 |
Msa0809890 | AT1G59750.2 | 31.056 | 322 | 191 | 8 | 73 | 372 | 22 | 334 | 8.19e-44 | 162 |
Msa0809890 | AT1G59750.1 | 31.056 | 322 | 191 | 8 | 73 | 372 | 22 | 334 | 8.84e-44 | 161 |
Msa0809890 | AT1G59750.3 | 31.056 | 322 | 191 | 8 | 73 | 372 | 22 | 334 | 8.84e-44 | 161 |
Msa0809890 | AT4G23980.2 | 30.650 | 323 | 190 | 8 | 73 | 372 | 12 | 323 | 1.42e-43 | 160 |
Msa0809890 | AT4G23980.1 | 30.650 | 323 | 190 | 8 | 73 | 372 | 12 | 323 | 1.51e-43 | 160 |
Msa0809890 | AT5G37020.2 | 31.692 | 325 | 188 | 10 | 72 | 371 | 21 | 336 | 1.78e-42 | 159 |
Msa0809890 | AT5G37020.1 | 31.692 | 325 | 188 | 10 | 72 | 371 | 21 | 336 | 2.70e-42 | 158 |
Msa0809890 | AT1G34310.1 | 31.677 | 322 | 183 | 9 | 73 | 372 | 27 | 333 | 1.87e-41 | 154 |
Msa0809890 | AT2G33860.1 | 32.468 | 308 | 177 | 8 | 73 | 358 | 54 | 352 | 2.29e-41 | 154 |
Msa0809890 | AT1G30330.1 | 31.818 | 330 | 181 | 11 | 72 | 371 | 22 | 337 | 5.92e-41 | 155 |
Msa0809890 | AT1G30330.3 | 31.818 | 330 | 181 | 11 | 72 | 371 | 24 | 339 | 6.16e-41 | 155 |
Msa0809890 | AT1G30330.2 | 31.818 | 330 | 181 | 11 | 72 | 371 | 24 | 339 | 6.16e-41 | 155 |
Msa0809890 | AT1G35540.1 | 30.435 | 322 | 187 | 9 | 73 | 372 | 27 | 333 | 1.04e-39 | 149 |
Msa0809890 | AT1G34390.1 | 30.960 | 323 | 182 | 11 | 73 | 372 | 27 | 331 | 1.13e-39 | 149 |
Msa0809890 | AT1G35520.1 | 31.366 | 322 | 184 | 9 | 73 | 372 | 27 | 333 | 3.94e-39 | 148 |
Msa0809890 | AT1G35240.1 | 30.435 | 322 | 187 | 9 | 73 | 372 | 27 | 333 | 7.30e-38 | 144 |
Msa0809890 | AT5G20730.2 | 31.118 | 331 | 184 | 10 | 70 | 371 | 21 | 336 | 8.08e-37 | 143 |
Msa0809890 | AT1G34410.1 | 29.814 | 322 | 189 | 9 | 73 | 372 | 27 | 333 | 2.78e-36 | 140 |
Msa0809890 | AT1G19220.1 | 30.488 | 328 | 190 | 9 | 70 | 371 | 20 | 335 | 3.97e-36 | 140 |
Msa0809890 | AT1G19850.2 | 30.086 | 349 | 210 | 10 | 48 | 372 | 20 | 358 | 1.17e-35 | 139 |
Msa0809890 | AT1G19850.1 | 30.086 | 349 | 210 | 10 | 48 | 372 | 31 | 369 | 1.26e-35 | 139 |
Msa0809890 | AT5G20730.3 | 31.024 | 332 | 184 | 11 | 70 | 371 | 21 | 337 | 2.76e-35 | 138 |
Msa0809890 | AT5G20730.1 | 31.024 | 332 | 184 | 11 | 70 | 371 | 21 | 337 | 2.93e-35 | 138 |
Msa0809890 | AT5G60450.2 | 29.532 | 342 | 203 | 12 | 66 | 377 | 34 | 367 | 5.57e-34 | 134 |
Msa0809890 | AT5G60450.1 | 29.586 | 338 | 200 | 12 | 70 | 377 | 62 | 391 | 1.15e-33 | 133 |
Msa0809890 | AT3G61830.2 | 32.353 | 272 | 159 | 6 | 116 | 372 | 23 | 284 | 2.18e-32 | 128 |
Msa0809890 | AT1G34170.1 | 27.507 | 349 | 210 | 11 | 51 | 372 | 1 | 333 | 5.44e-32 | 127 |
Msa0809890 | AT1G43950.1 | 36.058 | 208 | 111 | 7 | 73 | 271 | 27 | 221 | 6.21e-31 | 118 |
Msa0809890 | AT2G46530.2 | 33.333 | 222 | 120 | 5 | 169 | 372 | 33 | 244 | 2.51e-29 | 119 |
Msa0809890 | AT1G34170.2 | 29.137 | 278 | 163 | 8 | 51 | 303 | 1 | 269 | 4.64e-28 | 115 |
Msa0809890 | AT1G34170.3 | 29.137 | 278 | 163 | 8 | 51 | 303 | 1 | 269 | 4.66e-28 | 116 |
Msa0809890 | AT2G33860.2 | 32.500 | 200 | 115 | 4 | 173 | 358 | 2 | 195 | 6.12e-28 | 114 |
Msa0809890 | AT5G37020.3 | 30.400 | 250 | 146 | 8 | 141 | 371 | 1 | 241 | 1.29e-27 | 115 |
Msa0809890 | ATMG00940.1 | 45.205 | 73 | 38 | 1 | 276 | 348 | 60 | 130 | 2.06e-14 | 71.2 |
Find 92 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTTATCCTCCTTCCATTTC+CGG | 0.160827 | 5_3:-37353228 | Msa0809890:CDS |
TTTGGAATCTTCGAGATTTC+AGG | 0.221871 | 5_3:+37353544 | None:intergenic |
GTACATACACTTTCTTCTTT+TGG | 0.231423 | 5_3:-37352457 | Msa0809890:CDS |
AGCACATTTCTGCCAGATTT+TGG | 0.250965 | 5_3:+37353353 | None:intergenic |
CCCTAATTGGCGCATGCTTC+AGG | 0.281500 | 5_3:-37352479 | Msa0809890:CDS |
AAGGAGGATAACGATGAATA+AGG | 0.293928 | 5_3:+37353238 | None:intergenic |
CTGGAGGAGCTTCTTGTTCA+TGG | 0.301419 | 5_3:+37353115 | None:intergenic |
ATGATGCCATGAAGGTTAAT+TGG | 0.308769 | 5_3:-37352618 | Msa0809890:CDS |
CTCATTCTAATGTCCCTAAT+TGG | 0.313594 | 5_3:-37352492 | Msa0809890:CDS |
ACCTGAAGCATGCGCCAATT+AGG | 0.352249 | 5_3:+37352478 | None:intergenic |
TGCCAAGGATTGACACAGTT+TGG | 0.353376 | 5_3:+37353526 | None:intergenic |
GGTAACAGAGAAGGCGGTTA+TGG | 0.361245 | 5_3:-37352737 | Msa0809890:CDS |
GGTTATGGATGCGGTGGAAT+TGG | 0.365128 | 5_3:-37352722 | Msa0809890:CDS |
AGATGTCCAATTAACCTTCA+TGG | 0.371714 | 5_3:+37352612 | None:intergenic |
CCTGAAGCATGCGCCAATTA+GGG | 0.377642 | 5_3:+37352479 | None:intergenic |
TCGTCTTCGGCAGGAACCTC+TGG | 0.379847 | 5_3:+37353096 | None:intergenic |
TGGCCATGGCCATCCGTTAC+GGG | 0.387740 | 5_3:+37353135 | None:intergenic |
CTGACATTCATGGCCGAGTC+TGG | 0.393534 | 5_3:-37352921 | Msa0809890:CDS |
ACACAATCTGATTGCAATAG+TGG | 0.393698 | 5_3:-37353036 | Msa0809890:CDS |
GCTCCCCGGTATCACTTAAC+AGG | 0.396579 | 5_3:+37353421 | None:intergenic |
GACTGAAATGATGCCGGAAA+TGG | 0.400752 | 5_3:+37353215 | None:intergenic |
ATGGCCATGGCCATCCGTTA+CGG | 0.402053 | 5_3:+37353134 | None:intergenic |
CTCTCCGTCACTGACATTCA+TGG | 0.403879 | 5_3:-37352931 | Msa0809890:CDS |
ATGAAGGTTAATTGGACATC+TGG | 0.409873 | 5_3:-37352610 | Msa0809890:CDS |
TACGGGAGTGAGGAGAAGTT+TGG | 0.412326 | 5_3:+37353152 | None:intergenic |
GTATATACAGTTCAGCTTTG+TGG | 0.420575 | 5_3:+37353488 | None:intergenic |
GATGACATTGTTTCAGCCTC+AGG | 0.431757 | 5_3:-37352539 | Msa0809890:CDS |
GATCTTGCCGAAGCTTAACT+TGG | 0.446257 | 5_3:-37352977 | Msa0809890:CDS |
TTACCATCCCTACCAAAATC+TGG | 0.452282 | 5_3:-37353365 | Msa0809890:CDS |
TGTATTATCCGAGAGCGAAT+TGG | 0.460538 | 5_3:-37352672 | Msa0809890:CDS |
TCTGTCCTGTTAAGTGATAC+CGG | 0.467467 | 5_3:-37353426 | Msa0809890:CDS |
TCTGATTGCAATAGTGGCTA+TGG | 0.469763 | 5_3:-37353030 | Msa0809890:CDS |
GAAGATTCTTCTTTCTTCAA+AGG | 0.471685 | 5_3:+37352571 | None:intergenic |
GAATCGTCCAAGTTAAGCTT+CGG | 0.478925 | 5_3:+37352970 | None:intergenic |
CCTACTGAAAAGGTGTCTCT+TGG | 0.480185 | 5_3:+37352870 | None:intergenic |
ATTGTAGCCATCCTCGTCTT+CGG | 0.480424 | 5_3:+37353083 | None:intergenic |
TAAACTTTAGAATGTAGCTT+CGG | 0.481122 | 5_3:+37353312 | None:intergenic |
AGGAGGATAACGATGAATAA+GGG | 0.485184 | 5_3:+37353239 | None:intergenic |
AAGTCCATCCCCTACTGAAA+AGG | 0.489646 | 5_3:+37352860 | None:intergenic |
TTCCAAACTGTGTCAATCCT+TGG | 0.497383 | 5_3:-37353528 | Msa0809890:CDS |
AAAATCTGGCAGAAATGTGC+TGG | 0.507785 | 5_3:-37353351 | Msa0809890:CDS |
CTGTCCTGTTAAGTGATACC+GGG | 0.511775 | 5_3:-37353425 | Msa0809890:CDS |
AAACTGTGTCAATCCTTGGC+AGG | 0.512278 | 5_3:-37353524 | Msa0809890:CDS |
TAGCCATCCTCGTCTTCGGC+AGG | 0.513990 | 5_3:+37353087 | None:intergenic |
AGAGAAGGCGGTTATGGATG+CGG | 0.535241 | 5_3:-37352731 | Msa0809890:CDS |
GAGCTTCTTGTTCATGGCCA+TGG | 0.538260 | 5_3:+37353121 | None:intergenic |
ATGACATTGTTTCAGCCTCA+GGG | 0.540321 | 5_3:-37352538 | Msa0809890:CDS |
GTTGGAATATGCCGGAAAAG+TGG | 0.542178 | 5_3:-37352763 | Msa0809890:CDS |
AAATCAAACCAATTCGCTCT+CGG | 0.544399 | 5_3:+37352664 | None:intergenic |
TATGGATGCGGTGGAATTGG+CGG | 0.548189 | 5_3:-37352719 | Msa0809890:CDS |
ACAGAGCTCTCAGCACGTCT+AGG | 0.552883 | 5_3:+37353444 | None:intergenic |
AGATATTCGTTGGAATATGC+CGG | 0.558862 | 5_3:-37352771 | Msa0809890:CDS |
TCAGCTGGGAAGATATTCGT+TGG | 0.559165 | 5_3:-37352781 | Msa0809890:CDS |
AACAACAAGAAACTCGTCGC+TGG | 0.566110 | 5_3:-37352829 | Msa0809890:CDS |
TCGAGATTTCAGGTTCATCC+CGG | 0.566246 | 5_3:+37353554 | None:intergenic |
GGCAAGATCAAGTCAACGCA+AGG | 0.570350 | 5_3:+37352991 | None:intergenic |
CATGTTCTAAGTGACCTTGT+GGG | 0.576431 | 5_3:+37353283 | None:intergenic |
TTGGAATATGCCGGAAAAGT+GGG | 0.577884 | 5_3:-37352762 | Msa0809890:CDS |
CTCCTCACTCCCGTAACGGA+TGG | 0.581441 | 5_3:-37353144 | Msa0809890:CDS |
TGTTGTTGATGATGCCATGA+AGG | 0.584620 | 5_3:-37352626 | Msa0809890:CDS |
ACATGTTCTAAGTGACCTTG+TGG | 0.589249 | 5_3:+37353282 | None:intergenic |
TGCTTCGGAATGTAGCTCCC+CGG | 0.594410 | 5_3:+37353407 | None:intergenic |
ACTTCTCCTCACTCCCGTAA+CGG | 0.594736 | 5_3:-37353148 | Msa0809890:CDS |
ACTCCCGTAACGGATGGCCA+TGG | 0.599048 | 5_3:-37353138 | Msa0809890:CDS |
GGCCATCCGTTACGGGAGTG+AGG | 0.606038 | 5_3:+37353142 | None:intergenic |
TGAATAAGTTCAACCTGCCA+AGG | 0.607758 | 5_3:+37353511 | None:intergenic |
ATTAACGACTGAAATGATGC+CGG | 0.608025 | 5_3:+37353209 | None:intergenic |
TCTTCGGCAGGAACCTCTGG+AGG | 0.611963 | 5_3:+37353099 | None:intergenic |
AGAGGTTCCTGCCGAAGACG+AGG | 0.616143 | 5_3:-37353094 | Msa0809890:CDS |
AAGTGGGAAGGTAACAGAGA+AGG | 0.628618 | 5_3:-37352746 | Msa0809890:CDS |
AAGGGTGATGATTGTGTGAG+CGG | 0.629467 | 5_3:+37353257 | None:intergenic |
GTTCCTGCCGAAGACGAGGA+TGG | 0.629556 | 5_3:-37353090 | Msa0809890:CDS |
TATGCGTGTACTGCCAGACT+CGG | 0.634039 | 5_3:+37352908 | None:intergenic |
GAAGGCGGTTATGGATGCGG+TGG | 0.634390 | 5_3:-37352728 | Msa0809890:CDS |
GAAATGATGCCGGAAATGGA+AGG | 0.642956 | 5_3:+37353219 | None:intergenic |
TTGTGTGAGAATCTTGACAA+AGG | 0.644198 | 5_3:+37353053 | None:intergenic |
GTGACGGAGAGTGTCTGAGA+TGG | 0.649352 | 5_3:+37352943 | None:intergenic |
AAAGTTTACTACTTCCCACA+AGG | 0.649931 | 5_3:-37353297 | Msa0809890:CDS |
GAAAATACTACATCTGTGTG+AGG | 0.654483 | 5_3:+37353174 | None:intergenic |
TGACATTGTTTCAGCCTCAG+GGG | 0.655401 | 5_3:-37352537 | Msa0809890:CDS |
TCGGCCATGAATGTCAGTGA+CGG | 0.657021 | 5_3:+37352927 | None:intergenic |
GCAAGATCAAGTCAACGCAA+GGG | 0.677166 | 5_3:+37352992 | None:intergenic |
TGGGAAGGTAACAGAGAAGG+CGG | 0.684452 | 5_3:-37352743 | Msa0809890:CDS |
ATGATGCCGGAAATGGAAGG+AGG | 0.688005 | 5_3:+37353222 | None:intergenic |
TGAACAAGAAGCTCCTCCAG+AGG | 0.697806 | 5_3:-37353112 | Msa0809890:CDS |
GGTGTCTCTTGGATTTACCG+CGG | 0.707333 | 5_3:+37352881 | None:intergenic |
AATATGCCGGAAAAGTGGGA+AGG | 0.715565 | 5_3:-37352758 | Msa0809890:CDS |
TGTCCTGTTAAGTGATACCG+GGG | 0.717824 | 5_3:-37353424 | Msa0809890:CDS |
TAGCTTCGGAATCTTGACTG+AGG | 0.723506 | 5_3:+37353326 | None:intergenic |
ATATCTGAGATTGTCCCCTG+AGG | 0.748699 | 5_3:+37352523 | None:intergenic |
CATCTGTGTGAGGATCAACA+AGG | 0.762493 | 5_3:+37353184 | None:intergenic |
CAGTACACGCATATCTACCG+CGG | 0.778287 | 5_3:-37352898 | Msa0809890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCAAAAGATATAAAAAAAA+TGG | + | chr5_3:37352658-37352677 | None:intergenic | 10.0% |
!! | ATCAAAAGATATAAAAAAAA+TGG | + | chr5_3:37352658-37352677 | None:intergenic | 10.0% |
!! | AAAAACTTTCTAATTATTTC+TGG | - | chr5_3:37352515-37352534 | Msa0809890:CDS | 15.0% |
!!! | TTTTTATATCTTTTGATCAT+AGG | - | chr5_3:37352661-37352680 | Msa0809890:CDS | 15.0% |
!! | AAAAACTTTCTAATTATTTC+TGG | - | chr5_3:37352515-37352534 | Msa0809890:CDS | 15.0% |
!!! | TTTTTATATCTTTTGATCAT+AGG | - | chr5_3:37352661-37352680 | Msa0809890:CDS | 15.0% |
!!! | TGGTAAATATAGATTTTGTA+GGG | + | chr5_3:37352863-37352882 | None:intergenic | 20.0% |
!!! | ATGGTAAATATAGATTTTGT+AGG | + | chr5_3:37352864-37352883 | None:intergenic | 20.0% |
!!! | TGGTAAATATAGATTTTGTA+GGG | + | chr5_3:37352863-37352882 | None:intergenic | 20.0% |
!!! | ATGGTAAATATAGATTTTGT+AGG | + | chr5_3:37352864-37352883 | None:intergenic | 20.0% |
! | TTCTTAGAGAATATCACTAT+TGG | + | chr5_3:37352480-37352499 | None:intergenic | 25.0% |
!!! | TAAACTTTAGAATGTAGCTT+CGG | + | chr5_3:37352933-37352952 | None:intergenic | 25.0% |
! | TTCTTAGAGAATATCACTAT+TGG | + | chr5_3:37352480-37352499 | None:intergenic | 25.0% |
!!! | TAAACTTTAGAATGTAGCTT+CGG | + | chr5_3:37352933-37352952 | None:intergenic | 25.0% |
CTATTTCAAATGACTGATGT+TGG | - | chr5_3:37352625-37352644 | Msa0809890:CDS | 30.0% | |
! | TCTTTTGATCATAGGTTAAC+CGG | - | chr5_3:37352669-37352688 | Msa0809890:CDS | 30.0% |
!! | ACGTCTAGGATTTTTATTTG+GGG | + | chr5_3:37352787-37352806 | None:intergenic | 30.0% |
!! | CACGTCTAGGATTTTTATTT+GGG | + | chr5_3:37352788-37352807 | None:intergenic | 30.0% |
! | TTTTTGTTCAAAACTCAGCT+GGG | - | chr5_3:37353447-37353466 | Msa0809890:CDS | 30.0% |
!!! | GAATTGGTTTGATTTTGTAG+TGG | - | chr5_3:37353586-37353605 | Msa0809890:intron | 30.0% |
GAAGATTCTTCTTTCTTCAA+AGG | + | chr5_3:37353674-37353693 | None:intergenic | 30.0% | |
! | GTACATACACTTTCTTCTTT+TGG | - | chr5_3:37353785-37353804 | Msa0809890:intron | 30.0% |
CTATTTCAAATGACTGATGT+TGG | - | chr5_3:37352625-37352644 | Msa0809890:CDS | 30.0% | |
! | TCTTTTGATCATAGGTTAAC+CGG | - | chr5_3:37352669-37352688 | Msa0809890:CDS | 30.0% |
!! | ACGTCTAGGATTTTTATTTG+GGG | + | chr5_3:37352787-37352806 | None:intergenic | 30.0% |
!! | CACGTCTAGGATTTTTATTT+GGG | + | chr5_3:37352788-37352807 | None:intergenic | 30.0% |
! | TTTTTGTTCAAAACTCAGCT+GGG | - | chr5_3:37353447-37353466 | Msa0809890:CDS | 30.0% |
!!! | GAATTGGTTTGATTTTGTAG+TGG | - | chr5_3:37353586-37353605 | Msa0809890:intron | 30.0% |
GAAGATTCTTCTTTCTTCAA+AGG | + | chr5_3:37353674-37353693 | None:intergenic | 30.0% | |
! | GTACATACACTTTCTTCTTT+TGG | - | chr5_3:37353785-37353804 | Msa0809890:intron | 30.0% |
! | CTTTTGATCATAGGTTAACC+GGG | - | chr5_3:37352670-37352689 | Msa0809890:CDS | 35.0% |
! | TTTGGAATCTTCGAGATTTC+AGG | + | chr5_3:37352701-37352720 | None:intergenic | 35.0% |
GTATATACAGTTCAGCTTTG+TGG | + | chr5_3:37352757-37352776 | None:intergenic | 35.0% | |
!! | TCTAGGATTTTTATTTGGGG+GGG | + | chr5_3:37352784-37352803 | None:intergenic | 35.0% |
!! | GTCTAGGATTTTTATTTGGG+GGG | + | chr5_3:37352785-37352804 | None:intergenic | 35.0% |
!! | CGTCTAGGATTTTTATTTGG+GGG | + | chr5_3:37352786-37352805 | None:intergenic | 35.0% |
!! | GCACGTCTAGGATTTTTATT+TGG | + | chr5_3:37352789-37352808 | None:intergenic | 35.0% |
! | AGATTTTGTAGGGAATGCTT+CGG | + | chr5_3:37352853-37352872 | None:intergenic | 35.0% |
!! | ATTTCTGCCAGATTTTGGTA+GGG | + | chr5_3:37352887-37352906 | None:intergenic | 35.0% |
AAAGTTTACTACTTCCCACA+AGG | - | chr5_3:37352945-37352964 | Msa0809890:CDS | 35.0% | |
AGGAGGATAACGATGAATAA+GGG | + | chr5_3:37353006-37353025 | None:intergenic | 35.0% | |
AAGGAGGATAACGATGAATA+AGG | + | chr5_3:37353007-37353026 | None:intergenic | 35.0% | |
ATTAACGACTGAAATGATGC+CGG | + | chr5_3:37353036-37353055 | None:intergenic | 35.0% | |
GAAAATACTACATCTGTGTG+AGG | + | chr5_3:37353071-37353090 | None:intergenic | 35.0% | |
TTGTGTGAGAATCTTGACAA+AGG | + | chr5_3:37353192-37353211 | None:intergenic | 35.0% | |
ACACAATCTGATTGCAATAG+TGG | - | chr5_3:37353206-37353225 | Msa0809890:CDS | 35.0% | |
! | GTTTTTGTTCAAAACTCAGC+TGG | - | chr5_3:37353446-37353465 | Msa0809890:CDS | 35.0% |
AGATATTCGTTGGAATATGC+CGG | - | chr5_3:37353471-37353490 | Msa0809890:CDS | 35.0% | |
AAATCAAACCAATTCGCTCT+CGG | + | chr5_3:37353581-37353600 | None:intergenic | 35.0% | |
ATGATGCCATGAAGGTTAAT+TGG | - | chr5_3:37353624-37353643 | Msa0809890:intron | 35.0% | |
AGATGTCCAATTAACCTTCA+TGG | + | chr5_3:37353633-37353652 | None:intergenic | 35.0% | |
ATGAAGGTTAATTGGACATC+TGG | - | chr5_3:37353632-37353651 | Msa0809890:intron | 35.0% | |
CTCATTCTAATGTCCCTAAT+TGG | - | chr5_3:37353750-37353769 | Msa0809890:intron | 35.0% | |
! | CTTTTGATCATAGGTTAACC+GGG | - | chr5_3:37352670-37352689 | Msa0809890:CDS | 35.0% |
! | TTTGGAATCTTCGAGATTTC+AGG | + | chr5_3:37352701-37352720 | None:intergenic | 35.0% |
GTATATACAGTTCAGCTTTG+TGG | + | chr5_3:37352757-37352776 | None:intergenic | 35.0% | |
!! | TCTAGGATTTTTATTTGGGG+GGG | + | chr5_3:37352784-37352803 | None:intergenic | 35.0% |
!! | GTCTAGGATTTTTATTTGGG+GGG | + | chr5_3:37352785-37352804 | None:intergenic | 35.0% |
!! | CGTCTAGGATTTTTATTTGG+GGG | + | chr5_3:37352786-37352805 | None:intergenic | 35.0% |
!! | GCACGTCTAGGATTTTTATT+TGG | + | chr5_3:37352789-37352808 | None:intergenic | 35.0% |
! | AGATTTTGTAGGGAATGCTT+CGG | + | chr5_3:37352853-37352872 | None:intergenic | 35.0% |
!! | ATTTCTGCCAGATTTTGGTA+GGG | + | chr5_3:37352887-37352906 | None:intergenic | 35.0% |
AAAGTTTACTACTTCCCACA+AGG | - | chr5_3:37352945-37352964 | Msa0809890:CDS | 35.0% | |
AGGAGGATAACGATGAATAA+GGG | + | chr5_3:37353006-37353025 | None:intergenic | 35.0% | |
AAGGAGGATAACGATGAATA+AGG | + | chr5_3:37353007-37353026 | None:intergenic | 35.0% | |
ATTAACGACTGAAATGATGC+CGG | + | chr5_3:37353036-37353055 | None:intergenic | 35.0% | |
GAAAATACTACATCTGTGTG+AGG | + | chr5_3:37353071-37353090 | None:intergenic | 35.0% | |
TTGTGTGAGAATCTTGACAA+AGG | + | chr5_3:37353192-37353211 | None:intergenic | 35.0% | |
ACACAATCTGATTGCAATAG+TGG | - | chr5_3:37353206-37353225 | Msa0809890:CDS | 35.0% | |
! | GTTTTTGTTCAAAACTCAGC+TGG | - | chr5_3:37353446-37353465 | Msa0809890:CDS | 35.0% |
AGATATTCGTTGGAATATGC+CGG | - | chr5_3:37353471-37353490 | Msa0809890:CDS | 35.0% | |
AAATCAAACCAATTCGCTCT+CGG | + | chr5_3:37353581-37353600 | None:intergenic | 35.0% | |
ATGATGCCATGAAGGTTAAT+TGG | - | chr5_3:37353624-37353643 | Msa0809890:intron | 35.0% | |
AGATGTCCAATTAACCTTCA+TGG | + | chr5_3:37353633-37353652 | None:intergenic | 35.0% | |
ATGAAGGTTAATTGGACATC+TGG | - | chr5_3:37353632-37353651 | Msa0809890:intron | 35.0% | |
CTCATTCTAATGTCCCTAAT+TGG | - | chr5_3:37353750-37353769 | Msa0809890:intron | 35.0% | |
ACTATTGGAGCAAGTTACGT+AGG | + | chr5_3:37352465-37352484 | None:intergenic | 40.0% | |
TTCCAAACTGTGTCAATCCT+TGG | - | chr5_3:37352714-37352733 | Msa0809890:CDS | 40.0% | |
TGAATAAGTTCAACCTGCCA+AGG | + | chr5_3:37352734-37352753 | None:intergenic | 40.0% | |
!! | CTAGGATTTTTATTTGGGGG+GGG | + | chr5_3:37352783-37352802 | None:intergenic | 40.0% |
TCTGTCCTGTTAAGTGATAC+CGG | - | chr5_3:37352816-37352835 | Msa0809890:CDS | 40.0% | |
TTACCATCCCTACCAAAATC+TGG | - | chr5_3:37352877-37352896 | Msa0809890:CDS | 40.0% | |
!! | CATTTCTGCCAGATTTTGGT+AGG | + | chr5_3:37352888-37352907 | None:intergenic | 40.0% |
! | AGCACATTTCTGCCAGATTT+TGG | + | chr5_3:37352892-37352911 | None:intergenic | 40.0% |
AAAATCTGGCAGAAATGTGC+TGG | - | chr5_3:37352891-37352910 | Msa0809890:CDS | 40.0% | |
! | CATGTTCTAAGTGACCTTGT+GGG | + | chr5_3:37352962-37352981 | None:intergenic | 40.0% |
! | ACATGTTCTAAGTGACCTTG+TGG | + | chr5_3:37352963-37352982 | None:intergenic | 40.0% |
TCTGATTGCAATAGTGGCTA+TGG | - | chr5_3:37353212-37353231 | Msa0809890:CDS | 40.0% | |
GAATCGTCCAAGTTAAGCTT+CGG | + | chr5_3:37353275-37353294 | None:intergenic | 40.0% | |
! | CAAGAGACACCTTTTCAGTA+GGG | - | chr5_3:37353373-37353392 | Msa0809890:CDS | 40.0% |
! | AAGAGACACCTTTTCAGTAG+GGG | - | chr5_3:37353374-37353393 | Msa0809890:CDS | 40.0% |
TTGGAATATGCCGGAAAAGT+GGG | - | chr5_3:37353480-37353499 | Msa0809890:CDS | 40.0% | |
TGTATTATCCGAGAGCGAAT+TGG | - | chr5_3:37353570-37353589 | Msa0809890:intron | 40.0% | |
!! | TGTTGTTGATGATGCCATGA+AGG | - | chr5_3:37353616-37353635 | Msa0809890:intron | 40.0% |
ATGACATTGTTTCAGCCTCA+GGG | - | chr5_3:37353704-37353723 | Msa0809890:intron | 40.0% | |
ACTATTGGAGCAAGTTACGT+AGG | + | chr5_3:37352465-37352484 | None:intergenic | 40.0% | |
TTCCAAACTGTGTCAATCCT+TGG | - | chr5_3:37352714-37352733 | Msa0809890:CDS | 40.0% | |
TGAATAAGTTCAACCTGCCA+AGG | + | chr5_3:37352734-37352753 | None:intergenic | 40.0% | |
!! | CTAGGATTTTTATTTGGGGG+GGG | + | chr5_3:37352783-37352802 | None:intergenic | 40.0% |
TCTGTCCTGTTAAGTGATAC+CGG | - | chr5_3:37352816-37352835 | Msa0809890:CDS | 40.0% | |
TTACCATCCCTACCAAAATC+TGG | - | chr5_3:37352877-37352896 | Msa0809890:CDS | 40.0% | |
!! | CATTTCTGCCAGATTTTGGT+AGG | + | chr5_3:37352888-37352907 | None:intergenic | 40.0% |
! | AGCACATTTCTGCCAGATTT+TGG | + | chr5_3:37352892-37352911 | None:intergenic | 40.0% |
AAAATCTGGCAGAAATGTGC+TGG | - | chr5_3:37352891-37352910 | Msa0809890:CDS | 40.0% | |
! | CATGTTCTAAGTGACCTTGT+GGG | + | chr5_3:37352962-37352981 | None:intergenic | 40.0% |
! | ACATGTTCTAAGTGACCTTG+TGG | + | chr5_3:37352963-37352982 | None:intergenic | 40.0% |
TCTGATTGCAATAGTGGCTA+TGG | - | chr5_3:37353212-37353231 | Msa0809890:CDS | 40.0% | |
GAATCGTCCAAGTTAAGCTT+CGG | + | chr5_3:37353275-37353294 | None:intergenic | 40.0% | |
! | CAAGAGACACCTTTTCAGTA+GGG | - | chr5_3:37353373-37353392 | Msa0809890:CDS | 40.0% |
! | AAGAGACACCTTTTCAGTAG+GGG | - | chr5_3:37353374-37353393 | Msa0809890:CDS | 40.0% |
TTGGAATATGCCGGAAAAGT+GGG | - | chr5_3:37353480-37353499 | Msa0809890:CDS | 40.0% | |
TGTATTATCCGAGAGCGAAT+TGG | - | chr5_3:37353570-37353589 | Msa0809890:intron | 40.0% | |
!! | TGTTGTTGATGATGCCATGA+AGG | - | chr5_3:37353616-37353635 | Msa0809890:intron | 40.0% |
ATGACATTGTTTCAGCCTCA+GGG | - | chr5_3:37353704-37353723 | Msa0809890:intron | 40.0% | |
!! | TCGAGATTTCAGGTTCATCC+CGG | + | chr5_3:37352691-37352710 | None:intergenic | 45.0% |
TGCCAAGGATTGACACAGTT+TGG | + | chr5_3:37352719-37352738 | None:intergenic | 45.0% | |
AAACTGTGTCAATCCTTGGC+AGG | - | chr5_3:37352718-37352737 | Msa0809890:CDS | 45.0% | |
CTGTCCTGTTAAGTGATACC+GGG | - | chr5_3:37352817-37352836 | Msa0809890:CDS | 45.0% | |
TGTCCTGTTAAGTGATACCG+GGG | - | chr5_3:37352818-37352837 | Msa0809890:CDS | 45.0% | |
TAGCTTCGGAATCTTGACTG+AGG | + | chr5_3:37352919-37352938 | None:intergenic | 45.0% | |
AAGGGTGATGATTGTGTGAG+CGG | + | chr5_3:37352988-37353007 | None:intergenic | 45.0% | |
CGTTATCCTCCTTCCATTTC+CGG | - | chr5_3:37353014-37353033 | Msa0809890:CDS | 45.0% | |
GAAATGATGCCGGAAATGGA+AGG | + | chr5_3:37353026-37353045 | None:intergenic | 45.0% | |
GACTGAAATGATGCCGGAAA+TGG | + | chr5_3:37353030-37353049 | None:intergenic | 45.0% | |
CATCTGTGTGAGGATCAACA+AGG | + | chr5_3:37353061-37353080 | None:intergenic | 45.0% | |
ATTGTAGCCATCCTCGTCTT+CGG | + | chr5_3:37353162-37353181 | None:intergenic | 45.0% | |
GCAAGATCAAGTCAACGCAA+GGG | + | chr5_3:37353253-37353272 | None:intergenic | 45.0% | |
GATCTTGCCGAAGCTTAACT+TGG | - | chr5_3:37353265-37353284 | Msa0809890:CDS | 45.0% | |
!! | CCTACTGAAAAGGTGTCTCT+TGG | + | chr5_3:37353375-37353394 | None:intergenic | 45.0% |
! | CCAAGAGACACCTTTTCAGT+AGG | - | chr5_3:37353372-37353391 | Msa0809890:CDS | 45.0% |
AAGTCCATCCCCTACTGAAA+AGG | + | chr5_3:37353385-37353404 | None:intergenic | 45.0% | |
AACAACAAGAAACTCGTCGC+TGG | - | chr5_3:37353413-37353432 | Msa0809890:CDS | 45.0% | |
TCAGCTGGGAAGATATTCGT+TGG | - | chr5_3:37353461-37353480 | Msa0809890:CDS | 45.0% | |
GTTGGAATATGCCGGAAAAG+TGG | - | chr5_3:37353479-37353498 | Msa0809890:CDS | 45.0% | |
AATATGCCGGAAAAGTGGGA+AGG | - | chr5_3:37353484-37353503 | Msa0809890:CDS | 45.0% | |
!! | CTGTTACCTTCCCACTTTTC+CGG | + | chr5_3:37353493-37353512 | None:intergenic | 45.0% |
AAGTGGGAAGGTAACAGAGA+AGG | - | chr5_3:37353496-37353515 | Msa0809890:CDS | 45.0% | |
GGAATTGGCGGTGAAAAACA+TGG | - | chr5_3:37353535-37353554 | Msa0809890:CDS | 45.0% | |
GATGACATTGTTTCAGCCTC+AGG | - | chr5_3:37353703-37353722 | Msa0809890:intron | 45.0% | |
TGACATTGTTTCAGCCTCAG+GGG | - | chr5_3:37353705-37353724 | Msa0809890:intron | 45.0% | |
! | ATATCTGAGATTGTCCCCTG+AGG | + | chr5_3:37353722-37353741 | None:intergenic | 45.0% |
!! | TCGAGATTTCAGGTTCATCC+CGG | + | chr5_3:37352691-37352710 | None:intergenic | 45.0% |
TGCCAAGGATTGACACAGTT+TGG | + | chr5_3:37352719-37352738 | None:intergenic | 45.0% | |
AAACTGTGTCAATCCTTGGC+AGG | - | chr5_3:37352718-37352737 | Msa0809890:CDS | 45.0% | |
CTGTCCTGTTAAGTGATACC+GGG | - | chr5_3:37352817-37352836 | Msa0809890:CDS | 45.0% | |
TGTCCTGTTAAGTGATACCG+GGG | - | chr5_3:37352818-37352837 | Msa0809890:CDS | 45.0% | |
TAGCTTCGGAATCTTGACTG+AGG | + | chr5_3:37352919-37352938 | None:intergenic | 45.0% | |
AAGGGTGATGATTGTGTGAG+CGG | + | chr5_3:37352988-37353007 | None:intergenic | 45.0% | |
CGTTATCCTCCTTCCATTTC+CGG | - | chr5_3:37353014-37353033 | Msa0809890:CDS | 45.0% | |
GAAATGATGCCGGAAATGGA+AGG | + | chr5_3:37353026-37353045 | None:intergenic | 45.0% | |
GACTGAAATGATGCCGGAAA+TGG | + | chr5_3:37353030-37353049 | None:intergenic | 45.0% | |
CATCTGTGTGAGGATCAACA+AGG | + | chr5_3:37353061-37353080 | None:intergenic | 45.0% | |
ATTGTAGCCATCCTCGTCTT+CGG | + | chr5_3:37353162-37353181 | None:intergenic | 45.0% | |
GCAAGATCAAGTCAACGCAA+GGG | + | chr5_3:37353253-37353272 | None:intergenic | 45.0% | |
GATCTTGCCGAAGCTTAACT+TGG | - | chr5_3:37353265-37353284 | Msa0809890:CDS | 45.0% | |
!! | CCTACTGAAAAGGTGTCTCT+TGG | + | chr5_3:37353375-37353394 | None:intergenic | 45.0% |
! | CCAAGAGACACCTTTTCAGT+AGG | - | chr5_3:37353372-37353391 | Msa0809890:CDS | 45.0% |
AAGTCCATCCCCTACTGAAA+AGG | + | chr5_3:37353385-37353404 | None:intergenic | 45.0% | |
AACAACAAGAAACTCGTCGC+TGG | - | chr5_3:37353413-37353432 | Msa0809890:CDS | 45.0% | |
TCAGCTGGGAAGATATTCGT+TGG | - | chr5_3:37353461-37353480 | Msa0809890:CDS | 45.0% | |
GTTGGAATATGCCGGAAAAG+TGG | - | chr5_3:37353479-37353498 | Msa0809890:CDS | 45.0% | |
AATATGCCGGAAAAGTGGGA+AGG | - | chr5_3:37353484-37353503 | Msa0809890:CDS | 45.0% | |
!! | CTGTTACCTTCCCACTTTTC+CGG | + | chr5_3:37353493-37353512 | None:intergenic | 45.0% |
AAGTGGGAAGGTAACAGAGA+AGG | - | chr5_3:37353496-37353515 | Msa0809890:CDS | 45.0% | |
GGAATTGGCGGTGAAAAACA+TGG | - | chr5_3:37353535-37353554 | Msa0809890:CDS | 45.0% | |
GATGACATTGTTTCAGCCTC+AGG | - | chr5_3:37353703-37353722 | Msa0809890:intron | 45.0% | |
TGACATTGTTTCAGCCTCAG+GGG | - | chr5_3:37353705-37353724 | Msa0809890:intron | 45.0% | |
! | ATATCTGAGATTGTCCCCTG+AGG | + | chr5_3:37353722-37353741 | None:intergenic | 45.0% |
!! | CTGCCAGATTTTGGTAGGGA+TGG | + | chr5_3:37352883-37352902 | None:intergenic | 50.0% |
ATGATGCCGGAAATGGAAGG+AGG | + | chr5_3:37353023-37353042 | None:intergenic | 50.0% | |
TACGGGAGTGAGGAGAAGTT+TGG | + | chr5_3:37353093-37353112 | None:intergenic | 50.0% | |
ACTTCTCCTCACTCCCGTAA+CGG | - | chr5_3:37353094-37353113 | Msa0809890:CDS | 50.0% | |
GAGCTTCTTGTTCATGGCCA+TGG | + | chr5_3:37353124-37353143 | None:intergenic | 50.0% | |
CTGGAGGAGCTTCTTGTTCA+TGG | + | chr5_3:37353130-37353149 | None:intergenic | 50.0% | |
TGAACAAGAAGCTCCTCCAG+AGG | - | chr5_3:37353130-37353149 | Msa0809890:CDS | 50.0% | |
GGCAAGATCAAGTCAACGCA+AGG | + | chr5_3:37353254-37353273 | None:intergenic | 50.0% | |
CTCTCCGTCACTGACATTCA+TGG | - | chr5_3:37353311-37353330 | Msa0809890:CDS | 50.0% | |
TCGGCCATGAATGTCAGTGA+CGG | + | chr5_3:37353318-37353337 | None:intergenic | 50.0% | |
TATGCGTGTACTGCCAGACT+CGG | + | chr5_3:37353337-37353356 | None:intergenic | 50.0% | |
CAGTACACGCATATCTACCG+CGG | - | chr5_3:37353344-37353363 | Msa0809890:CDS | 50.0% | |
GGTGTCTCTTGGATTTACCG+CGG | + | chr5_3:37353364-37353383 | None:intergenic | 50.0% | |
! | GACACCTTTTCAGTAGGGGA+TGG | - | chr5_3:37353378-37353397 | Msa0809890:CDS | 50.0% |
TGGGAAGGTAACAGAGAAGG+CGG | - | chr5_3:37353499-37353518 | Msa0809890:CDS | 50.0% | |
GGTAACAGAGAAGGCGGTTA+TGG | - | chr5_3:37353505-37353524 | Msa0809890:CDS | 50.0% | |
AGAGAAGGCGGTTATGGATG+CGG | - | chr5_3:37353511-37353530 | Msa0809890:CDS | 50.0% | |
GGTTATGGATGCGGTGGAAT+TGG | - | chr5_3:37353520-37353539 | Msa0809890:CDS | 50.0% | |
TATGGATGCGGTGGAATTGG+CGG | - | chr5_3:37353523-37353542 | Msa0809890:CDS | 50.0% | |
CCTGAAGCATGCGCCAATTA+GGG | + | chr5_3:37353766-37353785 | None:intergenic | 50.0% | |
ACCTGAAGCATGCGCCAATT+AGG | + | chr5_3:37353767-37353786 | None:intergenic | 50.0% | |
!! | CTGCCAGATTTTGGTAGGGA+TGG | + | chr5_3:37352883-37352902 | None:intergenic | 50.0% |
ATGATGCCGGAAATGGAAGG+AGG | + | chr5_3:37353023-37353042 | None:intergenic | 50.0% | |
TACGGGAGTGAGGAGAAGTT+TGG | + | chr5_3:37353093-37353112 | None:intergenic | 50.0% | |
ACTTCTCCTCACTCCCGTAA+CGG | - | chr5_3:37353094-37353113 | Msa0809890:CDS | 50.0% | |
GAGCTTCTTGTTCATGGCCA+TGG | + | chr5_3:37353124-37353143 | None:intergenic | 50.0% | |
CTGGAGGAGCTTCTTGTTCA+TGG | + | chr5_3:37353130-37353149 | None:intergenic | 50.0% | |
TGAACAAGAAGCTCCTCCAG+AGG | - | chr5_3:37353130-37353149 | Msa0809890:CDS | 50.0% | |
GGCAAGATCAAGTCAACGCA+AGG | + | chr5_3:37353254-37353273 | None:intergenic | 50.0% | |
CTCTCCGTCACTGACATTCA+TGG | - | chr5_3:37353311-37353330 | Msa0809890:CDS | 50.0% | |
TCGGCCATGAATGTCAGTGA+CGG | + | chr5_3:37353318-37353337 | None:intergenic | 50.0% | |
TATGCGTGTACTGCCAGACT+CGG | + | chr5_3:37353337-37353356 | None:intergenic | 50.0% | |
CAGTACACGCATATCTACCG+CGG | - | chr5_3:37353344-37353363 | Msa0809890:CDS | 50.0% | |
GGTGTCTCTTGGATTTACCG+CGG | + | chr5_3:37353364-37353383 | None:intergenic | 50.0% | |
! | GACACCTTTTCAGTAGGGGA+TGG | - | chr5_3:37353378-37353397 | Msa0809890:CDS | 50.0% |
TGGGAAGGTAACAGAGAAGG+CGG | - | chr5_3:37353499-37353518 | Msa0809890:CDS | 50.0% | |
GGTAACAGAGAAGGCGGTTA+TGG | - | chr5_3:37353505-37353524 | Msa0809890:CDS | 50.0% | |
AGAGAAGGCGGTTATGGATG+CGG | - | chr5_3:37353511-37353530 | Msa0809890:CDS | 50.0% | |
GGTTATGGATGCGGTGGAAT+TGG | - | chr5_3:37353520-37353539 | Msa0809890:CDS | 50.0% | |
TATGGATGCGGTGGAATTGG+CGG | - | chr5_3:37353523-37353542 | Msa0809890:CDS | 50.0% | |
CCTGAAGCATGCGCCAATTA+GGG | + | chr5_3:37353766-37353785 | None:intergenic | 50.0% | |
ACCTGAAGCATGCGCCAATT+AGG | + | chr5_3:37353767-37353786 | None:intergenic | 50.0% | |
ACAGAGCTCTCAGCACGTCT+AGG | + | chr5_3:37352801-37352820 | None:intergenic | 55.0% | |
GCTCCCCGGTATCACTTAAC+AGG | + | chr5_3:37352824-37352843 | None:intergenic | 55.0% | |
TGCTTCGGAATGTAGCTCCC+CGG | + | chr5_3:37352838-37352857 | None:intergenic | 55.0% | |
ATGGCCATGGCCATCCGTTA+CGG | + | chr5_3:37353111-37353130 | None:intergenic | 55.0% | |
!! | GTGACGGAGAGTGTCTGAGA+TGG | + | chr5_3:37353302-37353321 | None:intergenic | 55.0% |
CTGACATTCATGGCCGAGTC+TGG | - | chr5_3:37353321-37353340 | Msa0809890:CDS | 55.0% | |
CCCTAATTGGCGCATGCTTC+AGG | - | chr5_3:37353763-37353782 | Msa0809890:intron | 55.0% | |
ACAGAGCTCTCAGCACGTCT+AGG | + | chr5_3:37352801-37352820 | None:intergenic | 55.0% | |
GCTCCCCGGTATCACTTAAC+AGG | + | chr5_3:37352824-37352843 | None:intergenic | 55.0% | |
TGCTTCGGAATGTAGCTCCC+CGG | + | chr5_3:37352838-37352857 | None:intergenic | 55.0% | |
ATGGCCATGGCCATCCGTTA+CGG | + | chr5_3:37353111-37353130 | None:intergenic | 55.0% | |
!! | GTGACGGAGAGTGTCTGAGA+TGG | + | chr5_3:37353302-37353321 | None:intergenic | 55.0% |
CTGACATTCATGGCCGAGTC+TGG | - | chr5_3:37353321-37353340 | Msa0809890:CDS | 55.0% | |
CCCTAATTGGCGCATGCTTC+AGG | - | chr5_3:37353763-37353782 | Msa0809890:intron | 55.0% | |
! | CTCCTCACTCCCGTAACGGA+TGG | - | chr5_3:37353098-37353117 | Msa0809890:CDS | 60.0% |
!! | ACTCCCGTAACGGATGGCCA+TGG | - | chr5_3:37353104-37353123 | Msa0809890:CDS | 60.0% |
TGGCCATGGCCATCCGTTAC+GGG | + | chr5_3:37353110-37353129 | None:intergenic | 60.0% | |
TCTTCGGCAGGAACCTCTGG+AGG | + | chr5_3:37353146-37353165 | None:intergenic | 60.0% | |
TCGTCTTCGGCAGGAACCTC+TGG | + | chr5_3:37353149-37353168 | None:intergenic | 60.0% | |
AGAGGTTCCTGCCGAAGACG+AGG | - | chr5_3:37353148-37353167 | Msa0809890:CDS | 60.0% | |
GTTCCTGCCGAAGACGAGGA+TGG | - | chr5_3:37353152-37353171 | Msa0809890:CDS | 60.0% | |
TAGCCATCCTCGTCTTCGGC+AGG | + | chr5_3:37353158-37353177 | None:intergenic | 60.0% | |
GAAGGCGGTTATGGATGCGG+TGG | - | chr5_3:37353514-37353533 | Msa0809890:CDS | 60.0% | |
! | CTCCTCACTCCCGTAACGGA+TGG | - | chr5_3:37353098-37353117 | Msa0809890:CDS | 60.0% |
!! | ACTCCCGTAACGGATGGCCA+TGG | - | chr5_3:37353104-37353123 | Msa0809890:CDS | 60.0% |
TGGCCATGGCCATCCGTTAC+GGG | + | chr5_3:37353110-37353129 | None:intergenic | 60.0% | |
TCTTCGGCAGGAACCTCTGG+AGG | + | chr5_3:37353146-37353165 | None:intergenic | 60.0% | |
TCGTCTTCGGCAGGAACCTC+TGG | + | chr5_3:37353149-37353168 | None:intergenic | 60.0% | |
AGAGGTTCCTGCCGAAGACG+AGG | - | chr5_3:37353148-37353167 | Msa0809890:CDS | 60.0% | |
GTTCCTGCCGAAGACGAGGA+TGG | - | chr5_3:37353152-37353171 | Msa0809890:CDS | 60.0% | |
TAGCCATCCTCGTCTTCGGC+AGG | + | chr5_3:37353158-37353177 | None:intergenic | 60.0% | |
GAAGGCGGTTATGGATGCGG+TGG | - | chr5_3:37353514-37353533 | Msa0809890:CDS | 60.0% | |
GGCCATCCGTTACGGGAGTG+AGG | + | chr5_3:37353103-37353122 | None:intergenic | 65.0% | |
GGCCATCCGTTACGGGAGTG+AGG | + | chr5_3:37353103-37353122 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 37352396 | 37353868 | 37352396 | ID=Msa0809890;Name=Msa0809890 |
chr5_3 | mRNA | 37352396 | 37353868 | 37352396 | ID=Msa0809890-mRNA-1;Parent=Msa0809890;Name=Msa0809890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.5|1|1|2|0|397 |
chr5_3 | exon | 37353861 | 37353868 | 37353861 | ID=Msa0809890-mRNA-1:exon:11536;Parent=Msa0809890-mRNA-1 |
chr5_3 | exon | 37352396 | 37353581 | 37352396 | ID=Msa0809890-mRNA-1:exon:11535;Parent=Msa0809890-mRNA-1 |
chr5_3 | CDS | 37353861 | 37353868 | 37353861 | ID=Msa0809890-mRNA-1:cds;Parent=Msa0809890-mRNA-1 |
chr5_3 | CDS | 37352396 | 37353581 | 37352396 | ID=Msa0809890-mRNA-1:cds;Parent=Msa0809890-mRNA-1 |
Gene Sequence |
Protein sequence |