Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810110 | XP_024636500.1 | 97.949 | 195 | 4 | 0 | 1 | 195 | 44 | 238 | 9.34e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810110 | sp|Q8VWG3|TT1_ARATH | 66.010 | 203 | 54 | 2 | 3 | 190 | 83 | 285 | 8.28e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810110 | A0A396IBK2 | 97.949 | 195 | 4 | 0 | 1 | 195 | 38 | 232 | 6.23e-141 | 401 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0810110 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810110 | MtrunA17_Chr4g0053341 | 97.949 | 195 | 4 | 0 | 1 | 195 | 38 | 232 | 1.20e-144 | 401 |
| Msa0810110 | MtrunA17_Chr8g0352011 | 68.750 | 208 | 45 | 3 | 1 | 188 | 110 | 317 | 8.27e-99 | 289 |
| Msa0810110 | MtrunA17_Chr5g0422571 | 67.347 | 196 | 56 | 3 | 3 | 192 | 64 | 257 | 4.42e-94 | 276 |
| Msa0810110 | MtrunA17_Chr1g0173841 | 63.636 | 220 | 48 | 3 | 1 | 188 | 147 | 366 | 9.03e-94 | 278 |
| Msa0810110 | MtrunA17_Chr7g0258011 | 64.762 | 210 | 50 | 2 | 3 | 188 | 118 | 327 | 1.30e-92 | 274 |
| Msa0810110 | MtrunA17_Chr2g0321291 | 62.857 | 210 | 61 | 2 | 1 | 193 | 80 | 289 | 1.54e-92 | 272 |
| Msa0810110 | MtrunA17_Chr2g0328921 | 66.337 | 202 | 54 | 3 | 1 | 188 | 88 | 289 | 7.89e-92 | 271 |
| Msa0810110 | MtrunA17_Chr4g0026521 | 63.265 | 196 | 62 | 1 | 5 | 190 | 76 | 271 | 1.78e-88 | 261 |
| Msa0810110 | MtrunA17_Chr1g0198651 | 67.816 | 174 | 51 | 2 | 24 | 192 | 87 | 260 | 3.24e-85 | 253 |
| Msa0810110 | MtrunA17_Chr1g0200421 | 42.515 | 167 | 85 | 7 | 29 | 187 | 229 | 392 | 5.23e-30 | 115 |
| Msa0810110 | MtrunA17_Chr2g0320341 | 37.255 | 153 | 87 | 5 | 43 | 188 | 238 | 388 | 2.00e-24 | 98.6 |
| Msa0810110 | MtrunA17_Chr8g0382121 | 38.411 | 151 | 85 | 6 | 42 | 187 | 118 | 265 | 4.55e-21 | 88.6 |
| Msa0810110 | MtrunA17_Chr7g0263941 | 35.762 | 151 | 87 | 5 | 32 | 181 | 45 | 186 | 1.29e-20 | 88.2 |
| Msa0810110 | MtrunA17_Chr1g0181381 | 33.113 | 151 | 92 | 4 | 32 | 181 | 49 | 191 | 2.31e-20 | 87.8 |
| Msa0810110 | MtrunA17_Chr4g0029521 | 33.775 | 151 | 91 | 4 | 32 | 181 | 49 | 191 | 7.47e-20 | 86.3 |
| Msa0810110 | MtrunA17_Chr2g0326381 | 34.437 | 151 | 90 | 4 | 32 | 181 | 43 | 185 | 1.09e-19 | 85.5 |
| Msa0810110 | MtrunA17_Chr2g0324991 | 35.374 | 147 | 85 | 5 | 32 | 176 | 3 | 141 | 2.04e-19 | 80.5 |
| Msa0810110 | MtrunA17_Chr1g0185121 | 34.194 | 155 | 91 | 5 | 29 | 181 | 48 | 193 | 2.42e-19 | 84.7 |
| Msa0810110 | MtrunA17_Chr1g0210821 | 33.775 | 151 | 90 | 4 | 32 | 181 | 55 | 196 | 3.63e-19 | 84.7 |
| Msa0810110 | MtrunA17_Chr1g0162971 | 34.437 | 151 | 89 | 4 | 32 | 181 | 52 | 193 | 4.73e-19 | 84.0 |
| Msa0810110 | MtrunA17_Chr1g0163001 | 33.775 | 151 | 90 | 4 | 32 | 181 | 54 | 195 | 5.43e-19 | 84.0 |
| Msa0810110 | MtrunA17_Chr1g0199101 | 34.868 | 152 | 87 | 5 | 32 | 181 | 58 | 199 | 6.49e-19 | 84.0 |
| Msa0810110 | MtrunA17_Chr8g0342421 | 32.911 | 158 | 95 | 5 | 26 | 181 | 66 | 214 | 8.54e-19 | 83.6 |
| Msa0810110 | MtrunA17_Chr1g0151351 | 32.895 | 152 | 91 | 5 | 32 | 181 | 52 | 194 | 1.38e-18 | 82.8 |
| Msa0810110 | MtrunA17_Chr8g0373541 | 33.113 | 151 | 91 | 4 | 32 | 181 | 44 | 185 | 2.54e-18 | 82.0 |
| Msa0810110 | MtrunA17_Chr4g0040571 | 33.544 | 158 | 94 | 5 | 26 | 181 | 43 | 191 | 4.02e-18 | 81.6 |
| Msa0810110 | MtrunA17_Chr1g0191991 | 33.544 | 158 | 94 | 5 | 26 | 181 | 67 | 215 | 6.64e-18 | 80.9 |
| Msa0810110 | MtrunA17_Chr2g0330171 | 32.911 | 158 | 95 | 5 | 26 | 181 | 50 | 198 | 7.50e-18 | 80.5 |
| Msa0810110 | MtrunA17_Chr7g0268961 | 31.579 | 152 | 92 | 5 | 32 | 181 | 33 | 174 | 1.53e-17 | 79.7 |
| Msa0810110 | MtrunA17_Chr3g0123941 | 36.000 | 150 | 87 | 7 | 42 | 187 | 130 | 274 | 9.33e-17 | 76.6 |
| Msa0810110 | MtrunA17_Chr3g0141431 | 31.081 | 148 | 92 | 4 | 32 | 177 | 33 | 172 | 9.81e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810110 | AT1G34790.1 | 66.010 | 203 | 54 | 2 | 3 | 190 | 83 | 285 | 8.41e-96 | 281 |
| Msa0810110 | AT3G57670.1 | 69.832 | 179 | 54 | 0 | 10 | 188 | 177 | 355 | 6.84e-91 | 271 |
| Msa0810110 | AT1G51220.1 | 76.250 | 160 | 38 | 0 | 35 | 194 | 163 | 322 | 3.88e-90 | 268 |
| Msa0810110 | AT3G20880.1 | 59.091 | 220 | 55 | 2 | 2 | 187 | 175 | 393 | 2.27e-89 | 268 |
| Msa0810110 | AT1G13290.1 | 64.615 | 195 | 59 | 4 | 3 | 191 | 54 | 244 | 7.67e-87 | 258 |
| Msa0810110 | AT1G08290.1 | 73.885 | 157 | 40 | 1 | 35 | 190 | 165 | 321 | 6.42e-85 | 254 |
| Msa0810110 | AT1G34370.3 | 40.113 | 177 | 95 | 6 | 20 | 187 | 3 | 177 | 9.50e-31 | 114 |
| Msa0810110 | AT1G34370.2 | 40.000 | 180 | 97 | 6 | 17 | 187 | 210 | 387 | 4.55e-30 | 115 |
| Msa0810110 | AT1G34370.1 | 40.000 | 180 | 97 | 6 | 17 | 187 | 210 | 387 | 4.55e-30 | 115 |
| Msa0810110 | AT5G22890.1 | 37.580 | 157 | 89 | 5 | 43 | 192 | 211 | 365 | 1.83e-24 | 99.0 |
| Msa0810110 | AT5G03150.1 | 34.437 | 151 | 90 | 4 | 32 | 181 | 64 | 206 | 7.35e-21 | 89.7 |
| Msa0810110 | AT5G44160.1 | 32.044 | 181 | 103 | 5 | 12 | 181 | 18 | 189 | 7.33e-20 | 86.7 |
| Msa0810110 | AT5G44160.2 | 34.437 | 151 | 89 | 4 | 32 | 181 | 9 | 150 | 1.80e-19 | 85.5 |
| Msa0810110 | AT2G02080.1 | 33.333 | 180 | 107 | 6 | 4 | 181 | 38 | 206 | 2.00e-19 | 85.5 |
| Msa0810110 | AT2G02080.4 | 33.333 | 180 | 107 | 6 | 4 | 181 | 38 | 206 | 2.00e-19 | 85.5 |
| Msa0810110 | AT2G02080.5 | 33.333 | 180 | 107 | 6 | 4 | 181 | 38 | 206 | 2.00e-19 | 85.5 |
| Msa0810110 | AT2G02080.3 | 33.333 | 180 | 107 | 6 | 4 | 181 | 38 | 206 | 2.00e-19 | 85.5 |
| Msa0810110 | AT5G60470.2 | 35.065 | 154 | 91 | 4 | 26 | 177 | 48 | 194 | 2.92e-19 | 85.1 |
| Msa0810110 | AT5G60470.3 | 35.065 | 154 | 91 | 4 | 26 | 177 | 44 | 190 | 3.09e-19 | 85.1 |
| Msa0810110 | AT5G66730.1 | 33.553 | 152 | 89 | 5 | 32 | 181 | 43 | 184 | 4.07e-19 | 84.7 |
| Msa0810110 | AT1G14580.1 | 34.416 | 154 | 91 | 4 | 29 | 181 | 61 | 205 | 4.15e-19 | 84.7 |
| Msa0810110 | AT1G14580.2 | 34.416 | 154 | 91 | 4 | 29 | 181 | 61 | 205 | 4.15e-19 | 84.7 |
| Msa0810110 | AT1G14580.3 | 34.416 | 154 | 91 | 4 | 29 | 181 | 75 | 219 | 4.16e-19 | 84.7 |
| Msa0810110 | AT5G60470.1 | 34.694 | 147 | 88 | 3 | 32 | 177 | 46 | 185 | 5.05e-19 | 84.3 |
| Msa0810110 | AT1G55110.3 | 33.548 | 155 | 92 | 5 | 29 | 181 | 71 | 216 | 5.33e-19 | 84.3 |
| Msa0810110 | AT1G55110.1 | 33.548 | 155 | 92 | 5 | 29 | 181 | 71 | 216 | 5.33e-19 | 84.3 |
| Msa0810110 | AT1G55110.2 | 33.548 | 155 | 92 | 5 | 29 | 181 | 71 | 216 | 5.33e-19 | 84.3 |
| Msa0810110 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 37 | 181 | 68 | 204 | 6.94e-19 | 84.3 |
| Msa0810110 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 37 | 181 | 68 | 204 | 6.94e-19 | 84.3 |
| Msa0810110 | AT3G45260.2 | 35.443 | 158 | 92 | 5 | 26 | 181 | 43 | 192 | 9.31e-19 | 83.6 |
| Msa0810110 | AT3G45260.1 | 35.443 | 158 | 92 | 5 | 26 | 181 | 43 | 192 | 9.31e-19 | 83.6 |
| Msa0810110 | AT1G03840.1 | 33.544 | 158 | 94 | 5 | 26 | 181 | 45 | 193 | 1.10e-18 | 83.6 |
| Msa0810110 | AT1G03840.2 | 33.121 | 157 | 94 | 5 | 26 | 181 | 45 | 191 | 1.58e-18 | 83.2 |
| Msa0810110 | AT2G02080.6 | 36.842 | 133 | 74 | 4 | 50 | 181 | 6 | 129 | 5.25e-18 | 81.3 |
| Msa0810110 | AT2G02080.2 | 36.842 | 133 | 74 | 4 | 50 | 181 | 6 | 129 | 5.25e-18 | 81.3 |
| Msa0810110 | AT3G50700.1 | 31.319 | 182 | 110 | 7 | 5 | 181 | 15 | 186 | 9.27e-18 | 80.9 |
| Msa0810110 | AT4G02670.1 | 32.468 | 154 | 95 | 4 | 29 | 181 | 61 | 206 | 9.66e-18 | 80.5 |
| Msa0810110 | AT4G02670.2 | 32.468 | 154 | 95 | 4 | 29 | 181 | 63 | 208 | 1.05e-17 | 80.5 |
| Msa0810110 | AT3G13810.5 | 31.818 | 154 | 96 | 4 | 29 | 181 | 73 | 218 | 2.53e-17 | 79.7 |
| Msa0810110 | AT3G13810.4 | 31.818 | 154 | 96 | 4 | 29 | 181 | 78 | 223 | 2.78e-17 | 79.3 |
| Msa0810110 | AT3G13810.1 | 31.818 | 154 | 96 | 4 | 29 | 181 | 78 | 223 | 2.78e-17 | 79.3 |
| Msa0810110 | AT3G13810.6 | 31.818 | 154 | 96 | 4 | 29 | 181 | 59 | 204 | 2.82e-17 | 79.3 |
| Msa0810110 | AT3G13810.2 | 31.788 | 151 | 94 | 4 | 32 | 181 | 82 | 224 | 3.43e-17 | 79.3 |
| Msa0810110 | AT3G13810.3 | 31.788 | 151 | 94 | 4 | 32 | 181 | 68 | 210 | 3.87e-17 | 79.0 |
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 5_3:+38146432 | Msa0810110:CDS |
| CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 5_3:-38146656 | None:intergenic |
| CACATCAAAGCATTTGGATT+TGG | 0.282170 | 5_3:+38146626 | Msa0810110:CDS |
| ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 5_3:+38145634 | Msa0810110:CDS |
| GTTGGTATCCAGTAATTGTT+AGG | 0.349260 | 5_3:-38145642 | None:intergenic |
| GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 5_3:-38145582 | None:intergenic |
| TTCACAAATCCATTCTCATT+TGG | 0.360159 | 5_3:-38145603 | None:intergenic |
| AAGGATCACATCAAAGCATT+TGG | 0.368107 | 5_3:+38146620 | Msa0810110:CDS |
| TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 5_3:-38146425 | None:intergenic |
| CCATGTTATTGTTGTTCAAA+TGG | 0.386271 | 5_3:+38146380 | Msa0810110:CDS |
| CAATCGTTACAACAACCTTC+AGG | 0.392156 | 5_3:+38145725 | Msa0810110:CDS |
| CAAACACAAGAGGTCACTTA+AGG | 0.393293 | 5_3:+38146601 | Msa0810110:CDS |
| TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 5_3:-38145630 | None:intergenic |
| GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 5_3:-38145565 | None:intergenic |
| GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 5_3:+38145555 | Msa0810110:CDS |
| ACTCAAGAACAGATTCTCAT+TGG | 0.435131 | 5_3:+38145663 | Msa0810110:CDS |
| TCGAAAATGTGGGAAGCCAT+TGG | 0.482738 | 5_3:+38146505 | Msa0810110:CDS |
| CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 5_3:-38146521 | None:intergenic |
| AGTGAATCACCAAATGAGAA+TGG | 0.498871 | 5_3:+38145594 | Msa0810110:CDS |
| GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 5_3:-38146355 | None:intergenic |
| CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 5_3:+38146522 | Msa0810110:CDS |
| TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 5_3:+38146424 | Msa0810110:CDS |
| ATGAGAATCTGTTCTTGAGT+TGG | 0.521544 | 5_3:-38145660 | None:intergenic |
| ACGTTTACTTGTCGAAAATG+TGG | 0.532025 | 5_3:+38146494 | Msa0810110:CDS |
| AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 5_3:-38146437 | None:intergenic |
| GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 5_3:-38146354 | None:intergenic |
| ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 5_3:-38145578 | None:intergenic |
| GGTAGGTCTAACAATGGTCG+TGG | 0.569196 | 5_3:-38146359 | None:intergenic |
| CGTTTACTTGTCGAAAATGT+GGG | 0.576502 | 5_3:+38146495 | Msa0810110:CDS |
| TTTGGTGATAGATGCATATG+TGG | 0.589947 | 5_3:+38146285 | Msa0810110:intron |
| TTGAACAACAATAACATGGT+AGG | 0.599315 | 5_3:-38146376 | None:intergenic |
| ACACACTACAAGAGAAAGCA+TGG | 0.621285 | 5_3:+38146464 | Msa0810110:CDS |
| CCATTTGAACAACAATAACA+TGG | 0.622921 | 5_3:-38146380 | None:intergenic |
| TTGGTGATAGATGCATATGT+GGG | 0.631361 | 5_3:+38146286 | Msa0810110:intron |
| AAGCGTTGGCTTTGTATCTG+TGG | 0.634099 | 5_3:+38146569 | Msa0810110:CDS |
| GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 5_3:+38146515 | Msa0810110:CDS |
| GATCAGATTTCAAACACAAG+AGG | 0.638076 | 5_3:+38146591 | Msa0810110:CDS |
| CATGGTTCGCAGTATCGAAG+AGG | 0.675110 | 5_3:+38146311 | Msa0810110:CDS |
| TAACATGGTAGGTCTAACAA+TGG | 0.693527 | 5_3:-38146365 | None:intergenic |
| TGGTGATAGATGCATATGTG+GGG | 0.723679 | 5_3:+38146287 | Msa0810110:intron |
| TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 5_3:+38145542 | None:intergenic |
| GGTGATAGATGCATATGTGG+GGG | 0.769392 | 5_3:+38146288 | Msa0810110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATTGATTGCAATAA+GGG | - | chr5_3:38146170-38146189 | None:intergenic | 15.0% |
| !!! | TTAAAATATTGATTGCAATA+AGG | - | chr5_3:38146171-38146190 | None:intergenic | 15.0% |
| !! | CCAAATTGAATATATAATAA+GGG | - | chr5_3:38146270-38146289 | None:intergenic | 15.0% |
| !! | ACCAAATTGAATATATAATA+AGG | - | chr5_3:38146271-38146290 | None:intergenic | 15.0% |
| !!! | TAAAATATTGATTGCAATAA+GGG | - | chr5_3:38146170-38146189 | None:intergenic | 15.0% |
| !!! | TTAAAATATTGATTGCAATA+AGG | - | chr5_3:38146171-38146190 | None:intergenic | 15.0% |
| !! | CCAAATTGAATATATAATAA+GGG | - | chr5_3:38146270-38146289 | None:intergenic | 15.0% |
| !! | ACCAAATTGAATATATAATA+AGG | - | chr5_3:38146271-38146290 | None:intergenic | 15.0% |
| !! | TAATCTCTCCAAAAAAAAAA+AGG | + | chr5_3:38145900-38145919 | Msa0810110:intron | 20.0% |
| !!! | AGCATTTACCTTTTTTTTTT+TGG | - | chr5_3:38145911-38145930 | None:intergenic | 20.0% |
| !! | CCCTTATTATATATTCAATT+TGG | + | chr5_3:38146267-38146286 | Msa0810110:intron | 20.0% |
| !! | TAATCTCTCCAAAAAAAAAA+AGG | + | chr5_3:38145900-38145919 | Msa0810110:intron | 20.0% |
| !!! | AGCATTTACCTTTTTTTTTT+TGG | - | chr5_3:38145911-38145930 | None:intergenic | 20.0% |
| !! | CCCTTATTATATATTCAATT+TGG | + | chr5_3:38146267-38146286 | Msa0810110:intron | 20.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | - | chr5_3:38145633-38145652 | None:intergenic | 25.0% |
| !! | GTGACAATAAAGTATTATGT+AGG | - | chr5_3:38145826-38145845 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5_3:38146025-38146044 | Msa0810110:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5_3:38146026-38146045 | Msa0810110:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | + | chr5_3:38146126-38146145 | Msa0810110:intron | 25.0% |
| ! | TAATTTATTTGCGACTATCA+AGG | - | chr5_3:38146195-38146214 | None:intergenic | 25.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | - | chr5_3:38145633-38145652 | None:intergenic | 25.0% |
| !! | GTGACAATAAAGTATTATGT+AGG | - | chr5_3:38145826-38145845 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5_3:38146025-38146044 | Msa0810110:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5_3:38146026-38146045 | Msa0810110:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | + | chr5_3:38146126-38146145 | Msa0810110:intron | 25.0% |
| ! | TAATTTATTTGCGACTATCA+AGG | - | chr5_3:38146195-38146214 | None:intergenic | 25.0% |
| ATTCACTTGAATTGTTAGGA+AGG | - | chr5_3:38145581-38145600 | None:intergenic | 30.0% | |
| TTCACAAATCCATTCTCATT+TGG | - | chr5_3:38145606-38145625 | None:intergenic | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | + | chr5_3:38145634-38145653 | Msa0810110:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5_3:38145716-38145735 | None:intergenic | 30.0% |
| CAACTCAATAGCATAATCTT+TGG | + | chr5_3:38145771-38145790 | Msa0810110:intron | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | + | chr5_3:38146230-38146249 | Msa0810110:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | - | chr5_3:38146236-38146255 | None:intergenic | 30.0% | |
| TTGAACAACAATAACATGGT+AGG | - | chr5_3:38146379-38146398 | None:intergenic | 30.0% | |
| CCATTTGAACAACAATAACA+TGG | - | chr5_3:38146383-38146402 | None:intergenic | 30.0% | |
| ! | CCATGTTATTGTTGTTCAAA+TGG | + | chr5_3:38146380-38146399 | Msa0810110:CDS | 30.0% |
| ATTCACTTGAATTGTTAGGA+AGG | - | chr5_3:38145581-38145600 | None:intergenic | 30.0% | |
| TTCACAAATCCATTCTCATT+TGG | - | chr5_3:38145606-38145625 | None:intergenic | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | + | chr5_3:38145634-38145653 | Msa0810110:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5_3:38145716-38145735 | None:intergenic | 30.0% |
| CAACTCAATAGCATAATCTT+TGG | + | chr5_3:38145771-38145790 | Msa0810110:intron | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | + | chr5_3:38146230-38146249 | Msa0810110:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | - | chr5_3:38146236-38146255 | None:intergenic | 30.0% | |
| TTGAACAACAATAACATGGT+AGG | - | chr5_3:38146379-38146398 | None:intergenic | 30.0% | |
| CCATTTGAACAACAATAACA+TGG | - | chr5_3:38146383-38146402 | None:intergenic | 30.0% | |
| ! | CCATGTTATTGTTGTTCAAA+TGG | + | chr5_3:38146380-38146399 | Msa0810110:CDS | 30.0% |
| GGTGATTCACTTGAATTGTT+AGG | - | chr5_3:38145585-38145604 | None:intergenic | 35.0% | |
| AGTGAATCACCAAATGAGAA+TGG | + | chr5_3:38145594-38145613 | Msa0810110:CDS | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | - | chr5_3:38145645-38145664 | None:intergenic | 35.0% | |
| ATGAGAATCTGTTCTTGAGT+TGG | - | chr5_3:38145663-38145682 | None:intergenic | 35.0% | |
| ACTCAAGAACAGATTCTCAT+TGG | + | chr5_3:38145663-38145682 | Msa0810110:CDS | 35.0% | |
| !!! | TGAAAGTTTTGAGGCAAACT+GGG | - | chr5_3:38145707-38145726 | None:intergenic | 35.0% |
| !!! | TTGAAAGTTTTGAGGCAAAC+TGG | - | chr5_3:38145708-38145727 | None:intergenic | 35.0% |
| AAGAAAACTACTACACCTGA+AGG | - | chr5_3:38145743-38145762 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | + | chr5_3:38145996-38146015 | Msa0810110:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | - | chr5_3:38146007-38146026 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5_3:38146033-38146052 | Msa0810110:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | + | chr5_3:38146285-38146304 | Msa0810110:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | + | chr5_3:38146286-38146305 | Msa0810110:intron | 35.0% |
| TAACATGGTAGGTCTAACAA+TGG | - | chr5_3:38146368-38146387 | None:intergenic | 35.0% | |
| ACGTTTACTTGTCGAAAATG+TGG | + | chr5_3:38146494-38146513 | Msa0810110:CDS | 35.0% | |
| CGTTTACTTGTCGAAAATGT+GGG | + | chr5_3:38146495-38146514 | Msa0810110:CDS | 35.0% | |
| AGAACTCATGAGAAAAACTG+TGG | + | chr5_3:38146545-38146564 | Msa0810110:CDS | 35.0% | |
| GATCAGATTTCAAACACAAG+AGG | + | chr5_3:38146591-38146610 | Msa0810110:CDS | 35.0% | |
| ! | AAGGATCACATCAAAGCATT+TGG | + | chr5_3:38146620-38146639 | Msa0810110:CDS | 35.0% |
| ! | CACATCAAAGCATTTGGATT+TGG | + | chr5_3:38146626-38146645 | Msa0810110:CDS | 35.0% |
| CACCAGATGAAGAAGAAAAA+GGG | - | chr5_3:38146658-38146677 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5_3:38146657-38146676 | Msa0810110:CDS | 35.0% |
| GGTGATTCACTTGAATTGTT+AGG | - | chr5_3:38145585-38145604 | None:intergenic | 35.0% | |
| AGTGAATCACCAAATGAGAA+TGG | + | chr5_3:38145594-38145613 | Msa0810110:CDS | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | - | chr5_3:38145645-38145664 | None:intergenic | 35.0% | |
| ATGAGAATCTGTTCTTGAGT+TGG | - | chr5_3:38145663-38145682 | None:intergenic | 35.0% | |
| ACTCAAGAACAGATTCTCAT+TGG | + | chr5_3:38145663-38145682 | Msa0810110:CDS | 35.0% | |
| !!! | TGAAAGTTTTGAGGCAAACT+GGG | - | chr5_3:38145707-38145726 | None:intergenic | 35.0% |
| !!! | TTGAAAGTTTTGAGGCAAAC+TGG | - | chr5_3:38145708-38145727 | None:intergenic | 35.0% |
| AAGAAAACTACTACACCTGA+AGG | - | chr5_3:38145743-38145762 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | + | chr5_3:38145996-38146015 | Msa0810110:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | - | chr5_3:38146007-38146026 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5_3:38146033-38146052 | Msa0810110:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | + | chr5_3:38146285-38146304 | Msa0810110:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | + | chr5_3:38146286-38146305 | Msa0810110:intron | 35.0% |
| TAACATGGTAGGTCTAACAA+TGG | - | chr5_3:38146368-38146387 | None:intergenic | 35.0% | |
| ACGTTTACTTGTCGAAAATG+TGG | + | chr5_3:38146494-38146513 | Msa0810110:CDS | 35.0% | |
| CGTTTACTTGTCGAAAATGT+GGG | + | chr5_3:38146495-38146514 | Msa0810110:CDS | 35.0% | |
| AGAACTCATGAGAAAAACTG+TGG | + | chr5_3:38146545-38146564 | Msa0810110:CDS | 35.0% | |
| GATCAGATTTCAAACACAAG+AGG | + | chr5_3:38146591-38146610 | Msa0810110:CDS | 35.0% | |
| ! | AAGGATCACATCAAAGCATT+TGG | + | chr5_3:38146620-38146639 | Msa0810110:CDS | 35.0% |
| ! | CACATCAAAGCATTTGGATT+TGG | + | chr5_3:38146626-38146645 | Msa0810110:CDS | 35.0% |
| CACCAGATGAAGAAGAAAAA+GGG | - | chr5_3:38146658-38146677 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5_3:38146657-38146676 | Msa0810110:CDS | 35.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | - | chr5_3:38145568-38145587 | None:intergenic | 40.0% | |
| CAATCGTTACAACAACCTTC+AGG | + | chr5_3:38145725-38145744 | Msa0810110:CDS | 40.0% | |
| CTGTTATGTCCTAAAACCCT+AGG | - | chr5_3:38146045-38146064 | None:intergenic | 40.0% | |
| ATTGATTGCAATAAGGGTCG+TGG | - | chr5_3:38146164-38146183 | None:intergenic | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | + | chr5_3:38146287-38146306 | Msa0810110:intron | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | + | chr5_3:38146432-38146451 | Msa0810110:CDS | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | - | chr5_3:38146440-38146459 | None:intergenic | 40.0% | |
| ACACACTACAAGAGAAAGCA+TGG | + | chr5_3:38146464-38146483 | Msa0810110:CDS | 40.0% | |
| CAAACACAAGAGGTCACTTA+AGG | + | chr5_3:38146601-38146620 | Msa0810110:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5_3:38146653-38146672 | Msa0810110:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | - | chr5_3:38146659-38146678 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5_3:38146656-38146675 | Msa0810110:CDS | 40.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | - | chr5_3:38145568-38145587 | None:intergenic | 40.0% | |
| CAATCGTTACAACAACCTTC+AGG | + | chr5_3:38145725-38145744 | Msa0810110:CDS | 40.0% | |
| CTGTTATGTCCTAAAACCCT+AGG | - | chr5_3:38146045-38146064 | None:intergenic | 40.0% | |
| ATTGATTGCAATAAGGGTCG+TGG | - | chr5_3:38146164-38146183 | None:intergenic | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | + | chr5_3:38146287-38146306 | Msa0810110:intron | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | + | chr5_3:38146432-38146451 | Msa0810110:CDS | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | - | chr5_3:38146440-38146459 | None:intergenic | 40.0% | |
| ACACACTACAAGAGAAAGCA+TGG | + | chr5_3:38146464-38146483 | Msa0810110:CDS | 40.0% | |
| CAAACACAAGAGGTCACTTA+AGG | + | chr5_3:38146601-38146620 | Msa0810110:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5_3:38146653-38146672 | Msa0810110:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | - | chr5_3:38146659-38146678 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5_3:38146656-38146675 | Msa0810110:CDS | 40.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5_3:38145555-38145574 | Msa0810110:CDS | 45.0% |
| GAACGCAATCGAGGTTTCAT+CGG | + | chr5_3:38146092-38146111 | Msa0810110:intron | 45.0% | |
| GAGGTTTCATCGGTCAGATT+TGG | + | chr5_3:38146102-38146121 | Msa0810110:intron | 45.0% | |
| ATTGCAATAAGGGTCGTGGT+AGG | - | chr5_3:38146160-38146179 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | + | chr5_3:38146288-38146307 | Msa0810110:intron | 45.0% | |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5_3:38146338-38146357 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | - | chr5_3:38146357-38146376 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | + | chr5_3:38146424-38146443 | Msa0810110:CDS | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5_3:38146428-38146447 | None:intergenic | 45.0% |
| TCGAAAATGTGGGAAGCCAT+TGG | + | chr5_3:38146505-38146524 | Msa0810110:CDS | 45.0% | |
| CAATCACCTTTCACTGCCAA+TGG | - | chr5_3:38146524-38146543 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | + | chr5_3:38146522-38146541 | Msa0810110:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | + | chr5_3:38146555-38146574 | Msa0810110:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5_3:38146569-38146588 | Msa0810110:CDS | 45.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5_3:38145555-38145574 | Msa0810110:CDS | 45.0% |
| GAACGCAATCGAGGTTTCAT+CGG | + | chr5_3:38146092-38146111 | Msa0810110:intron | 45.0% | |
| GAGGTTTCATCGGTCAGATT+TGG | + | chr5_3:38146102-38146121 | Msa0810110:intron | 45.0% | |
| ATTGCAATAAGGGTCGTGGT+AGG | - | chr5_3:38146160-38146179 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | + | chr5_3:38146288-38146307 | Msa0810110:intron | 45.0% | |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5_3:38146338-38146357 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | - | chr5_3:38146357-38146376 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | + | chr5_3:38146424-38146443 | Msa0810110:CDS | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5_3:38146428-38146447 | None:intergenic | 45.0% |
| TCGAAAATGTGGGAAGCCAT+TGG | + | chr5_3:38146505-38146524 | Msa0810110:CDS | 45.0% | |
| CAATCACCTTTCACTGCCAA+TGG | - | chr5_3:38146524-38146543 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | + | chr5_3:38146522-38146541 | Msa0810110:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | + | chr5_3:38146555-38146574 | Msa0810110:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5_3:38146569-38146588 | Msa0810110:CDS | 45.0% |
| TTGCAACACGAACGCAATCG+AGG | + | chr5_3:38146083-38146102 | Msa0810110:intron | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | + | chr5_3:38146293-38146312 | Msa0810110:intron | 50.0% | |
| ! | CATGGTTCGCAGTATCGAAG+AGG | + | chr5_3:38146311-38146330 | Msa0810110:CDS | 50.0% |
| GGTCTAACAATGGTCGTGGA+TGG | - | chr5_3:38146358-38146377 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | - | chr5_3:38146362-38146381 | None:intergenic | 50.0% | |
| TTGCAACACGAACGCAATCG+AGG | + | chr5_3:38146083-38146102 | Msa0810110:intron | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | + | chr5_3:38146293-38146312 | Msa0810110:intron | 50.0% | |
| ! | CATGGTTCGCAGTATCGAAG+AGG | + | chr5_3:38146311-38146330 | Msa0810110:CDS | 50.0% |
| GGTCTAACAATGGTCGTGGA+TGG | - | chr5_3:38146358-38146377 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | - | chr5_3:38146362-38146381 | None:intergenic | 50.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | + | chr5_3:38146515-38146534 | Msa0810110:CDS | 55.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | + | chr5_3:38146515-38146534 | Msa0810110:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 38145549 | 38146682 | 38145549 | ID=Msa0810110;Name=Msa0810110 |
| chr5_3 | mRNA | 38145549 | 38146682 | 38145549 | ID=Msa0810110-mRNA-1;Parent=Msa0810110;Name=Msa0810110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|0|2|0|195 |
| chr5_3 | exon | 38145549 | 38145746 | 38145549 | ID=Msa0810110-mRNA-1:exon:11651;Parent=Msa0810110-mRNA-1 |
| chr5_3 | exon | 38146296 | 38146682 | 38146296 | ID=Msa0810110-mRNA-1:exon:11652;Parent=Msa0810110-mRNA-1 |
| chr5_3 | CDS | 38145549 | 38145746 | 38145549 | ID=Msa0810110-mRNA-1:cds;Parent=Msa0810110-mRNA-1 |
| chr5_3 | CDS | 38146296 | 38146682 | 38146296 | ID=Msa0810110-mRNA-1:cds;Parent=Msa0810110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
