Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810170 | XP_039685680.1 | 85.515 | 359 | 52 | 0 | 4 | 362 | 33 | 391 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810170 | sp|Q9SZL8|FRS5_ARATH | 31.065 | 338 | 216 | 4 | 19 | 356 | 70 | 390 | 3.39e-48 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810170 | D3YBB9 | 78.552 | 359 | 77 | 0 | 4 | 362 | 65 | 423 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0810170 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810170 | MtrunA17_Chr2g0324011 | 35.860 | 343 | 197 | 5 | 23 | 362 | 8 | 330 | 1.57e-67 | 223 |
| Msa0810170 | MtrunA17_Chr3g0082121 | 35.329 | 334 | 189 | 6 | 28 | 361 | 49 | 355 | 1.92e-61 | 209 |
| Msa0810170 | MtrunA17_Chr1g0164591 | 38.525 | 244 | 141 | 2 | 118 | 361 | 1 | 235 | 3.71e-58 | 192 |
| Msa0810170 | MtrunA17_Chr1g0202341 | 34.706 | 340 | 198 | 6 | 21 | 358 | 50 | 367 | 3.34e-57 | 197 |
| Msa0810170 | MtrunA17_Chr7g0258861 | 35.294 | 306 | 174 | 6 | 23 | 323 | 8 | 294 | 1.99e-56 | 187 |
| Msa0810170 | MtrunA17_Chr8g0363841 | 31.751 | 337 | 205 | 7 | 27 | 360 | 22 | 336 | 8.62e-48 | 172 |
| Msa0810170 | MtrunA17_Chr1g0172971 | 80.000 | 100 | 20 | 0 | 4 | 103 | 18 | 117 | 1.78e-47 | 169 |
| Msa0810170 | MtrunA17_Chr5g0448761 | 30.205 | 341 | 219 | 4 | 19 | 356 | 57 | 381 | 4.88e-47 | 171 |
| Msa0810170 | MtrunA17_Chr1g0203721 | 30.117 | 342 | 210 | 6 | 27 | 362 | 68 | 386 | 2.61e-45 | 166 |
| Msa0810170 | MtrunA17_Chr2g0296781 | 31.231 | 333 | 201 | 6 | 26 | 356 | 1 | 307 | 6.30e-45 | 164 |
| Msa0810170 | MtrunA17_Chr2g0287651 | 29.619 | 341 | 215 | 6 | 26 | 362 | 79 | 398 | 1.00e-44 | 164 |
| Msa0810170 | MtrunA17_Chr6g0458391 | 29.552 | 335 | 199 | 5 | 28 | 362 | 231 | 528 | 6.02e-43 | 159 |
| Msa0810170 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 175 | 247 | 1 | 73 | 4.92e-42 | 142 |
| Msa0810170 | MtrunA17_Chr6g0477261 | 37.895 | 190 | 118 | 0 | 167 | 356 | 7 | 196 | 6.70e-40 | 149 |
| Msa0810170 | MtrunA17_Chr5g0441581 | 28.446 | 341 | 210 | 6 | 19 | 356 | 26 | 335 | 1.76e-38 | 146 |
| Msa0810170 | MtrunA17_Chr1g0203051 | 26.627 | 338 | 222 | 5 | 37 | 372 | 94 | 407 | 6.88e-38 | 144 |
| Msa0810170 | MtrunA17_Chr2g0329031 | 28.108 | 370 | 225 | 8 | 10 | 373 | 2 | 336 | 9.83e-37 | 141 |
| Msa0810170 | MtrunA17_Chr5g0431001 | 28.402 | 338 | 217 | 8 | 27 | 356 | 66 | 386 | 3.65e-36 | 137 |
| Msa0810170 | MtrunA17_Chr1g0198761 | 28.249 | 354 | 225 | 8 | 13 | 356 | 38 | 372 | 8.13e-35 | 135 |
| Msa0810170 | MtrunA17_Chr2g0291591 | 27.548 | 363 | 212 | 11 | 3 | 351 | 44 | 369 | 4.40e-34 | 132 |
| Msa0810170 | MtrunA17_Chr1g0196541 | 27.545 | 334 | 212 | 8 | 26 | 356 | 1 | 307 | 4.70e-34 | 133 |
| Msa0810170 | MtrunA17_Chr1g0207551 | 27.859 | 341 | 224 | 5 | 18 | 358 | 30 | 348 | 2.77e-33 | 131 |
| Msa0810170 | MtrunA17_Chr5g0440451 | 25.287 | 348 | 211 | 7 | 21 | 351 | 42 | 357 | 3.23e-32 | 128 |
| Msa0810170 | MtrunA17_Chr2g0290391 | 27.168 | 346 | 216 | 8 | 26 | 356 | 55 | 379 | 9.99e-32 | 126 |
| Msa0810170 | MtrunA17_Chr2g0276841 | 26.852 | 324 | 213 | 7 | 36 | 354 | 84 | 388 | 2.71e-31 | 125 |
| Msa0810170 | MtrunA17_Chr2g0287061 | 26.316 | 342 | 193 | 8 | 28 | 367 | 189 | 473 | 7.64e-31 | 124 |
| Msa0810170 | MtrunA17_Chr2g0294841 | 28.235 | 340 | 211 | 10 | 28 | 356 | 51 | 368 | 4.09e-30 | 122 |
| Msa0810170 | MtrunA17_Chr3g0080351 | 26.074 | 349 | 227 | 6 | 21 | 368 | 75 | 393 | 1.04e-29 | 120 |
| Msa0810170 | MtrunA17_Chr3g0118611 | 36.585 | 164 | 104 | 0 | 208 | 371 | 111 | 274 | 1.35e-29 | 120 |
| Msa0810170 | MtrunA17_Chr5g0448511 | 35.119 | 168 | 107 | 2 | 203 | 369 | 1 | 167 | 4.10e-28 | 115 |
| Msa0810170 | MtrunA17_Chr2g0291581 | 25.767 | 326 | 206 | 5 | 25 | 349 | 74 | 364 | 1.84e-26 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810170 | AT4G38180.1 | 31.065 | 338 | 216 | 4 | 19 | 356 | 70 | 390 | 3.44e-49 | 177 |
| Msa0810170 | AT3G06250.2 | 27.434 | 339 | 182 | 7 | 21 | 356 | 189 | 466 | 5.94e-35 | 136 |
| Msa0810170 | AT3G06250.1 | 27.434 | 339 | 182 | 7 | 21 | 356 | 189 | 466 | 5.94e-35 | 136 |
| Msa0810170 | AT3G06250.3 | 27.434 | 339 | 182 | 7 | 21 | 356 | 189 | 466 | 5.94e-35 | 136 |
| Msa0810170 | AT4G15090.1 | 27.679 | 336 | 222 | 6 | 37 | 371 | 66 | 381 | 2.31e-32 | 129 |
| Msa0810170 | AT4G15090.5 | 27.679 | 336 | 222 | 6 | 37 | 371 | 66 | 381 | 2.31e-32 | 129 |
| Msa0810170 | AT4G15090.3 | 27.679 | 336 | 222 | 6 | 37 | 371 | 66 | 381 | 2.31e-32 | 129 |
| Msa0810170 | AT4G15090.2 | 27.679 | 336 | 222 | 6 | 37 | 371 | 66 | 381 | 2.31e-32 | 129 |
| Msa0810170 | AT4G15090.4 | 27.679 | 336 | 222 | 6 | 37 | 371 | 66 | 381 | 2.31e-32 | 129 |
| Msa0810170 | AT5G28530.1 | 26.934 | 349 | 216 | 8 | 27 | 354 | 60 | 390 | 5.01e-32 | 127 |
| Msa0810170 | AT5G28530.3 | 26.934 | 349 | 216 | 8 | 27 | 354 | 60 | 390 | 6.22e-32 | 127 |
| Msa0810170 | AT5G28530.2 | 26.934 | 349 | 216 | 8 | 27 | 354 | 60 | 390 | 6.22e-32 | 127 |
| Msa0810170 | AT2G27110.2 | 30.041 | 243 | 153 | 4 | 114 | 354 | 108 | 335 | 1.26e-30 | 124 |
| Msa0810170 | AT2G27110.1 | 30.041 | 243 | 153 | 4 | 114 | 354 | 108 | 335 | 1.26e-30 | 124 |
| Msa0810170 | AT5G18960.2 | 25.490 | 357 | 201 | 9 | 11 | 362 | 200 | 496 | 1.73e-30 | 123 |
| Msa0810170 | AT5G18960.1 | 25.490 | 357 | 201 | 9 | 11 | 362 | 200 | 496 | 1.73e-30 | 123 |
| Msa0810170 | AT2G27110.3 | 36.129 | 155 | 99 | 0 | 200 | 354 | 36 | 190 | 7.62e-30 | 121 |
| Msa0810170 | AT1G10240.2 | 26.235 | 324 | 215 | 7 | 36 | 354 | 62 | 366 | 2.01e-29 | 120 |
| Msa0810170 | AT1G10240.1 | 26.235 | 324 | 215 | 7 | 36 | 354 | 62 | 366 | 2.01e-29 | 120 |
| Msa0810170 | AT1G76320.3 | 26.087 | 322 | 206 | 6 | 37 | 356 | 12 | 303 | 3.70e-29 | 119 |
| Msa0810170 | AT1G76320.2 | 26.087 | 322 | 206 | 6 | 37 | 356 | 12 | 303 | 5.03e-29 | 119 |
| Msa0810170 | AT1G76320.1 | 26.087 | 322 | 206 | 6 | 37 | 356 | 12 | 303 | 5.34e-29 | 119 |
| Msa0810170 | AT1G76320.4 | 26.087 | 322 | 206 | 6 | 37 | 356 | 12 | 303 | 5.34e-29 | 119 |
| Msa0810170 | AT2G32250.2 | 27.246 | 345 | 183 | 8 | 12 | 354 | 30 | 308 | 2.56e-28 | 117 |
| Msa0810170 | AT2G32250.4 | 27.246 | 345 | 183 | 8 | 12 | 354 | 30 | 308 | 2.56e-28 | 117 |
| Msa0810170 | AT2G32250.6 | 27.246 | 345 | 183 | 8 | 12 | 354 | 30 | 308 | 2.59e-28 | 117 |
| Msa0810170 | AT2G32250.1 | 27.246 | 345 | 183 | 8 | 12 | 354 | 30 | 308 | 2.59e-28 | 117 |
| Msa0810170 | AT2G32250.3 | 27.246 | 345 | 183 | 8 | 12 | 354 | 30 | 308 | 2.59e-28 | 117 |
| Msa0810170 | AT2G32250.5 | 27.089 | 347 | 185 | 8 | 12 | 356 | 30 | 310 | 2.79e-28 | 117 |
| Msa0810170 | AT2G32250.7 | 27.500 | 320 | 166 | 7 | 37 | 354 | 12 | 267 | 6.68e-28 | 115 |
| Msa0810170 | AT1G80010.1 | 26.796 | 362 | 221 | 12 | 28 | 375 | 101 | 432 | 6.84e-28 | 115 |
| Msa0810170 | AT2G32250.8 | 27.500 | 320 | 166 | 7 | 37 | 354 | 12 | 267 | 6.86e-28 | 115 |
| Msa0810170 | AT3G22170.2 | 23.919 | 347 | 213 | 7 | 21 | 356 | 69 | 375 | 3.82e-25 | 107 |
| Msa0810170 | AT3G22170.1 | 23.919 | 347 | 213 | 7 | 21 | 356 | 69 | 375 | 3.82e-25 | 107 |
| Msa0810170 | AT4G38170.1 | 37.903 | 124 | 72 | 2 | 222 | 344 | 24 | 143 | 3.62e-23 | 101 |
| Msa0810170 | AT1G52520.1 | 25.552 | 317 | 204 | 7 | 28 | 344 | 91 | 375 | 1.20e-21 | 97.1 |
| Msa0810170 | AT4G19990.1 | 29.697 | 165 | 114 | 2 | 206 | 368 | 106 | 270 | 2.88e-17 | 84.0 |
| Msa0810170 | AT4G19990.5 | 29.697 | 165 | 114 | 2 | 206 | 368 | 163 | 327 | 3.06e-17 | 84.0 |
| Msa0810170 | AT4G19990.6 | 29.697 | 165 | 114 | 2 | 206 | 368 | 163 | 327 | 3.22e-17 | 84.0 |
| Msa0810170 | AT4G19990.2 | 29.697 | 165 | 114 | 2 | 206 | 368 | 163 | 327 | 3.22e-17 | 84.0 |
| Msa0810170 | AT4G19990.3 | 29.697 | 165 | 114 | 2 | 206 | 368 | 163 | 327 | 3.39e-17 | 84.0 |
| Msa0810170 | AT4G19990.4 | 29.697 | 165 | 114 | 2 | 206 | 368 | 163 | 327 | 3.39e-17 | 84.0 |
| Msa0810170 | AT4G19990.7 | 29.697 | 165 | 114 | 2 | 206 | 368 | 177 | 341 | 3.48e-17 | 84.0 |
Find 118 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_3:-38255947 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_3:+38255079 | Msa0810170:three_prime_UTR |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5_3:+38254532 | Msa0810170:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_3:+38254019 | Msa0810170:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_3:+38254565 | Msa0810170:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5_3:-38254659 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_3:-38255941 | None:intergenic |
| TTTCGATGAGTTAACTAATC+TGG | 0.303419 | 5_3:+38254812 | Msa0810170:exon |
| ACCAGCTTGGTCTGTGTATA+TGG | 0.305801 | 5_3:-38254677 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_3:+38254853 | Msa0810170:three_prime_UTR |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_3:+38255793 | Msa0810170:three_prime_UTR |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_3:-38254069 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_3:-38256009 | None:intergenic |
| AGTTTCGAATGTTGATGTTT+TGG | 0.346702 | 5_3:+38255376 | Msa0810170:three_prime_UTR |
| GAGGGATAATCATGCAGATT+TGG | 0.364518 | 5_3:+38255112 | Msa0810170:three_prime_UTR |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 5_3:-38255669 | None:intergenic |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 5_3:+38256171 | Msa0810170:three_prime_UTR |
| CTGTCTGTGAACCATTTGTT+GGG | 0.380118 | 5_3:+38255894 | Msa0810170:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_3:+38255785 | Msa0810170:three_prime_UTR |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_3:+38254076 | Msa0810170:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_3:+38254068 | Msa0810170:CDS |
| TTTCAATTTAACATATCTAA+TGG | 0.390380 | 5_3:+38253155 | Msa0810170:five_prime_UTR |
| TTCCTTCAAATACTATTATG+AGG | 0.392551 | 5_3:+38255253 | Msa0810170:three_prime_UTR |
| TCATGCAGATTTGGACTTCA+AGG | 0.395128 | 5_3:+38255121 | Msa0810170:three_prime_UTR |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_3:+38255933 | Msa0810170:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_3:-38255923 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_3:+38255818 | Msa0810170:three_prime_UTR |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5_3:-38253300 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_3:+38253310 | Msa0810170:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_3:+38255501 | Msa0810170:three_prime_UTR |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_3:-38255424 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5_3:+38253381 | Msa0810170:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_3:-38255425 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_3:+38253716 | Msa0810170:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_3:+38253598 | Msa0810170:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.433188 | 5_3:+38255459 | Msa0810170:three_prime_UTR |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5_3:+38253630 | Msa0810170:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.446650 | 5_3:-38254670 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_3:+38253581 | Msa0810170:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_3:+38253464 | Msa0810170:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_3:+38253746 | Msa0810170:CDS |
| GCTGTCTGTGAACCATTTGT+TGG | 0.450764 | 5_3:+38255893 | Msa0810170:three_prime_UTR |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 5_3:+38254953 | Msa0810170:three_prime_UTR |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_3:+38254744 | Msa0810170:CDS |
| ATCTGAGAGTGGAAAATTGA+TGG | 0.458266 | 5_3:+38253235 | Msa0810170:exon |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5_3:-38253686 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_3:+38255502 | Msa0810170:three_prime_UTR |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 5_3:+38254907 | Msa0810170:three_prime_UTR |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_3:+38253430 | Msa0810170:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 5_3:+38254952 | Msa0810170:three_prime_UTR |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_3:+38253791 | Msa0810170:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_3:-38255255 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_3:-38253575 | None:intergenic |
| TTTGGTGCAGTCCCAACAAA+TGG | 0.485464 | 5_3:-38255905 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_3:+38253368 | Msa0810170:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5_3:+38253859 | Msa0810170:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_3:+38253424 | Msa0810170:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_3:+38255269 | Msa0810170:three_prime_UTR |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_3:-38254545 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_3:+38254854 | Msa0810170:three_prime_UTR |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_3:+38253872 | Msa0810170:CDS |
| CACTTTAAAACATATTGTGC+AGG | 0.492420 | 5_3:-38255602 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_3:+38255093 | Msa0810170:three_prime_UTR |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_3:-38255173 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_3:+38253778 | Msa0810170:CDS |
| ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 5_3:+38254958 | Msa0810170:three_prime_UTR |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_3:+38255438 | Msa0810170:three_prime_UTR |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_3:-38253830 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_3:-38255418 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_3:-38255061 | None:intergenic |
| TGTCTTCTACAGCATCAACT+TGG | 0.523056 | 5_3:-38253964 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5_3:+38253634 | Msa0810170:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_3:+38255439 | Msa0810170:three_prime_UTR |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 5_3:+38255999 | Msa0810170:three_prime_UTR |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 5_3:+38255659 | Msa0810170:three_prime_UTR |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_3:+38253475 | Msa0810170:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_3:-38255056 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_3:+38255270 | Msa0810170:three_prime_UTR |
| CTCGTTCAAATCGTATGCAT+TGG | 0.543047 | 5_3:+38254940 | Msa0810170:three_prime_UTR |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5_3:+38253300 | Msa0810170:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_3:+38253476 | Msa0810170:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5_3:-38253674 | None:intergenic |
| ACTTCAACAACGCACCAGCT+TGG | 0.558588 | 5_3:-38254690 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_3:+38253926 | Msa0810170:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_3:+38253259 | Msa0810170:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_3:+38253794 | Msa0810170:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_3:+38255745 | Msa0810170:three_prime_UTR |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_3:-38255174 | None:intergenic |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 5_3:+38255408 | Msa0810170:three_prime_UTR |
| AGAGAATGCAAAGAAAATCT+CGG | 0.585106 | 5_3:+38254768 | Msa0810170:CDS |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 5_3:+38256024 | Msa0810170:three_prime_UTR |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_3:-38255195 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_3:+38253785 | Msa0810170:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_3:+38255786 | Msa0810170:three_prime_UTR |
| ACCATATACACAGACCAAGC+TGG | 0.590176 | 5_3:+38254676 | Msa0810170:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_3:+38255781 | Msa0810170:three_prime_UTR |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 5_3:+38256086 | Msa0810170:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_3:-38255861 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5_3:+38253865 | Msa0810170:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 5_3:-38255693 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_3:+38253779 | Msa0810170:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5_3:+38253868 | Msa0810170:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_3:+38255748 | Msa0810170:three_prime_UTR |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_3:+38255171 | Msa0810170:three_prime_UTR |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_3:+38255256 | Msa0810170:three_prime_UTR |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 5_3:-38254909 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_3:+38253799 | Msa0810170:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.625495 | 5_3:-38255215 | None:intergenic |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_3:-38255423 | None:intergenic |
| AGAACTAGACTGTCACATGT+TGG | 0.634703 | 5_3:-38253524 | None:intergenic |
| ATATCAACTTCATCTGAGAG+TGG | 0.638511 | 5_3:+38253224 | Msa0810170:five_prime_UTR |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_3:+38254745 | Msa0810170:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_3:+38255094 | Msa0810170:three_prime_UTR |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5_3:+38253633 | Msa0810170:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_3:-38255644 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_3:+38255770 | Msa0810170:three_prime_UTR |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_3:-38255520 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_3:+38255503 | Msa0810170:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAATTTAACATATCTAA+TGG | + | chr5_3:38253155-38253174 | Msa0810170:five_prime_UTR | 15.0% |
| !!! | TTAATGTTTATATTGATTGA+AGG | + | chr5_3:38254223-38254242 | Msa0810170:intron | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr5_3:38256073-38256092 | Msa0810170:three_prime_UTR | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr5_3:38253368-38253387 | Msa0810170:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr5_3:38253424-38253443 | Msa0810170:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr5_3:38253630-38253649 | Msa0810170:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5_3:38254251-38254270 | Msa0810170:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5_3:38254882-38254901 | Msa0810170:three_prime_UTR | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr5_3:38256171-38256190 | Msa0810170:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr5_3:38253259-38253278 | Msa0810170:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5_3:38253420-38253439 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr5_3:38253430-38253449 | Msa0810170:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr5_3:38253633-38253652 | Msa0810170:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr5_3:38253634-38253653 | Msa0810170:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5_3:38253746-38253765 | Msa0810170:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5_3:38253981-38254000 | Msa0810170:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr5_3:38253982-38254001 | Msa0810170:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5_3:38254068-38254087 | Msa0810170:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr5_3:38254094-38254113 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr5_3:38254141-38254160 | Msa0810170:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5_3:38254243-38254262 | Msa0810170:intron | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5_3:38254250-38254269 | Msa0810170:intron | 25.0% |
| ! | ATTCTATTTACACAACACAA+TGG | + | chr5_3:38254462-38254481 | Msa0810170:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5_3:38254503-38254522 | Msa0810170:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr5_3:38254721-38254740 | None:intergenic | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5_3:38254886-38254905 | Msa0810170:three_prime_UTR | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5_3:38255079-38255098 | Msa0810170:three_prime_UTR | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5_3:38255218-38255237 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5_3:38255253-38255272 | Msa0810170:three_prime_UTR | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | - | chr5_3:38253303-38253322 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr5_3:38253300-38253319 | Msa0810170:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr5_3:38253310-38253329 | Msa0810170:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5_3:38253475-38253494 | Msa0810170:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5_3:38253476-38253495 | Msa0810170:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr5_3:38253565-38253584 | Msa0810170:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr5_3:38253598-38253617 | Msa0810170:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5_3:38253677-38253696 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | + | chr5_3:38253779-38253798 | Msa0810170:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5_3:38253823-38253842 | Msa0810170:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr5_3:38253833-38253852 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr5_3:38253947-38253966 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr5_3:38254019-38254038 | Msa0810170:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5_3:38254072-38254091 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5_3:38254076-38254095 | Msa0810170:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5_3:38254155-38254174 | Msa0810170:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr5_3:38254180-38254199 | Msa0810170:intron | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr5_3:38254314-38254333 | None:intergenic | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr5_3:38254548-38254567 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5_3:38254662-38254681 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5_3:38254712-38254731 | Msa0810170:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5_3:38254724-38254743 | Msa0810170:CDS | 30.0% |
| AGAGAATGCAAAGAAAATCT+CGG | + | chr5_3:38254768-38254787 | Msa0810170:CDS | 30.0% | |
| TTTCGATGAGTTAACTAATC+TGG | + | chr5_3:38254812-38254831 | Msa0810170:exon | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr5_3:38254853-38254872 | Msa0810170:three_prime_UTR | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr5_3:38254854-38254873 | Msa0810170:three_prime_UTR | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr5_3:38255064-38255083 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr5_3:38255198-38255217 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5_3:38255258-38255277 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5_3:38255256-38255275 | Msa0810170:three_prime_UTR | 30.0% | |
| ! | CAAAGTTTTCACATTTGAGA+AGG | + | chr5_3:38255313-38255332 | Msa0810170:three_prime_UTR | 30.0% |
| ! | AGTTTCGAATGTTGATGTTT+TGG | + | chr5_3:38255376-38255395 | Msa0810170:three_prime_UTR | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr5_3:38255426-38255445 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr5_3:38255427-38255446 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr5_3:38255438-38255457 | Msa0810170:three_prime_UTR | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr5_3:38255439-38255458 | Msa0810170:three_prime_UTR | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr5_3:38255535-38255554 | Msa0810170:three_prime_UTR | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5_3:38255538-38255557 | Msa0810170:three_prime_UTR | 30.0% |
| !! | CACTTTAAAACATATTGTGC+AGG | - | chr5_3:38255605-38255624 | None:intergenic | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+TGG | + | chr5_3:38255603-38255622 | Msa0810170:three_prime_UTR | 30.0% |
| !!! | CACAATATGTTTTAAAGTGG+TGG | + | chr5_3:38255606-38255625 | Msa0810170:three_prime_UTR | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr5_3:38255770-38255789 | Msa0810170:three_prime_UTR | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr5_3:38255818-38255837 | Msa0810170:three_prime_UTR | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5_3:38255926-38255945 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr5_3:38255933-38255952 | Msa0810170:three_prime_UTR | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr5_3:38255944-38255963 | None:intergenic | 30.0% | |
| ATAAGTTAGGAAAGATGATG+AGG | + | chr5_3:38256086-38256105 | Msa0810170:three_prime_UTR | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | + | chr5_3:38256104-38256123 | Msa0810170:three_prime_UTR | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr5_3:38253196-38253215 | Msa0810170:five_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr5_3:38253224-38253243 | Msa0810170:five_prime_UTR | 35.0% | |
| ATCTGAGAGTGGAAAATTGA+TGG | + | chr5_3:38253235-38253254 | Msa0810170:exon | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr5_3:38253381-38253400 | Msa0810170:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr5_3:38253464-38253483 | Msa0810170:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr5_3:38253501-38253520 | Msa0810170:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr5_3:38253559-38253578 | Msa0810170:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr5_3:38253564-38253583 | Msa0810170:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr5_3:38253716-38253735 | Msa0810170:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr5_3:38253778-38253797 | Msa0810170:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr5_3:38253859-38253878 | Msa0810170:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5_3:38254161-38254180 | Msa0810170:intron | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr5_3:38254281-38254300 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | - | chr5_3:38254290-38254309 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5_3:38254565-38254584 | Msa0810170:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5_3:38254608-38254627 | Msa0810170:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5_3:38254737-38254756 | Msa0810170:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5_3:38255023-38255042 | Msa0810170:three_prime_UTR | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5_3:38255093-38255112 | Msa0810170:three_prime_UTR | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5_3:38255094-38255113 | Msa0810170:three_prime_UTR | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr5_3:38255428-38255447 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5_3:38255545-38255564 | Msa0810170:three_prime_UTR | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | + | chr5_3:38255659-38255678 | Msa0810170:three_prime_UTR | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr5_3:38255872-38255891 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr5_3:38255999-38256018 | Msa0810170:three_prime_UTR | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr5_3:38256024-38256043 | Msa0810170:three_prime_UTR | 35.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5_3:38253515-38253534 | None:intergenic | 40.0% |
| AGAACTAGACTGTCACATGT+TGG | - | chr5_3:38253527-38253546 | None:intergenic | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5_3:38253785-38253804 | Msa0810170:CDS | 40.0% |
| TGTCTTCTACAGCATCAACT+TGG | - | chr5_3:38253967-38253986 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr5_3:38253989-38254008 | Msa0810170:CDS | 40.0% |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr5_3:38254532-38254551 | Msa0810170:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr5_3:38254673-38254692 | None:intergenic | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr5_3:38254912-38254931 | None:intergenic | 40.0% |
| CTCGTTCAAATCGTATGCAT+TGG | + | chr5_3:38254940-38254959 | Msa0810170:three_prime_UTR | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr5_3:38254953-38254972 | Msa0810170:three_prime_UTR | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr5_3:38255059-38255078 | None:intergenic | 40.0% | |
| GAGGGATAATCATGCAGATT+TGG | + | chr5_3:38255112-38255131 | Msa0810170:three_prime_UTR | 40.0% | |
| TCATGCAGATTTGGACTTCA+AGG | + | chr5_3:38255121-38255140 | Msa0810170:three_prime_UTR | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr5_3:38255269-38255288 | Msa0810170:three_prime_UTR | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5_3:38255270-38255289 | Msa0810170:three_prime_UTR | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr5_3:38255408-38255427 | Msa0810170:three_prime_UTR | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr5_3:38255501-38255520 | Msa0810170:three_prime_UTR | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr5_3:38255502-38255521 | Msa0810170:three_prime_UTR | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5_3:38255548-38255567 | Msa0810170:three_prime_UTR | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | - | chr5_3:38255647-38255666 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr5_3:38255672-38255691 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr5_3:38255696-38255715 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr5_3:38255781-38255800 | Msa0810170:three_prime_UTR | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr5_3:38255864-38255883 | None:intergenic | 40.0% |
| CTGTCTGTGAACCATTTGTT+GGG | + | chr5_3:38255894-38255913 | Msa0810170:three_prime_UTR | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr5_3:38255950-38255969 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr5_3:38256012-38256031 | None:intergenic | 40.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr5_3:38253569-38253588 | Msa0810170:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr5_3:38253578-38253597 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5_3:38253581-38253600 | Msa0810170:CDS | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr5_3:38253865-38253884 | Msa0810170:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr5_3:38253868-38253887 | Msa0810170:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr5_3:38253926-38253945 | Msa0810170:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr5_3:38254294-38254313 | Msa0810170:intron | 45.0% | |
| ! | TCCAGCTATGCAAAGAGCAT+AGG | + | chr5_3:38254408-38254427 | Msa0810170:intron | 45.0% |
| ACCTATGCTCTTTGCATAGC+TGG | - | chr5_3:38254412-38254431 | None:intergenic | 45.0% | |
| ACCATATACACAGACCAAGC+TGG | + | chr5_3:38254676-38254695 | Msa0810170:CDS | 45.0% | |
| ACCAGCTTGGTCTGTGTATA+TGG | - | chr5_3:38254680-38254699 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | + | chr5_3:38254907-38254926 | Msa0810170:three_prime_UTR | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr5_3:38254952-38254971 | Msa0810170:three_prime_UTR | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr5_3:38254975-38254994 | Msa0810170:three_prime_UTR | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr5_3:38255171-38255190 | Msa0810170:three_prime_UTR | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr5_3:38255421-38255440 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr5_3:38255503-38255522 | Msa0810170:three_prime_UTR | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr5_3:38255523-38255542 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr5_3:38255793-38255812 | Msa0810170:three_prime_UTR | 45.0% | |
| GCTGTCTGTGAACCATTTGT+TGG | + | chr5_3:38255893-38255912 | Msa0810170:three_prime_UTR | 45.0% | |
| ! | TTTGGTGCAGTCCCAACAAA+TGG | - | chr5_3:38255908-38255927 | None:intergenic | 45.0% |
| CTCAAGTAGCGCAAATGCTC+TGG | - | chr5_3:38253689-38253708 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5_3:38253791-38253810 | Msa0810170:CDS | 50.0% |
| ACTTCAACAACGCACCAGCT+TGG | - | chr5_3:38254693-38254712 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr5_3:38254744-38254763 | Msa0810170:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr5_3:38254745-38254764 | Msa0810170:CDS | 50.0% | |
| !! | ATTGGTCTTCAGCTTGGGTG+AGG | + | chr5_3:38254958-38254977 | Msa0810170:three_prime_UTR | 50.0% |
| GACCGCATAAGCTGACTGTT+GGG | - | chr5_3:38255176-38255195 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr5_3:38255459-38255478 | Msa0810170:three_prime_UTR | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr5_3:38255745-38255764 | Msa0810170:three_prime_UTR | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr5_3:38255786-38255805 | Msa0810170:three_prime_UTR | 50.0% | |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5_3:38253794-38253813 | Msa0810170:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5_3:38253872-38253891 | Msa0810170:CDS | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | - | chr5_3:38255177-38255196 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr5_3:38255785-38255804 | Msa0810170:three_prime_UTR | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr5_3:38255799-38255818 | Msa0810170:three_prime_UTR | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5_3:38253799-38253818 | Msa0810170:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr5_3:38255748-38255767 | Msa0810170:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 38253136 | 38256211 | 38253136 | ID=Msa0810170;Name=Msa0810170 |
| chr5_3 | mRNA | 38253136 | 38256211 | 38253136 | ID=Msa0810170-mRNA-1;Parent=Msa0810170;Name=Msa0810170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|1|1|1|1|2|1386|375 |
| chr5_3 | exon | 38253136 | 38254097 | 38253136 | ID=Msa0810170-mRNA-1:exon:11690;Parent=Msa0810170-mRNA-1 |
| chr5_3 | exon | 38254542 | 38256211 | 38254542 | ID=Msa0810170-mRNA-1:exon:11691;Parent=Msa0810170-mRNA-1 |
| chr5_3 | five_prime_UTR | 38253136 | 38253253 | 38253136 | ID=Msa0810170-mRNA-1:five_prime_utr;Parent=Msa0810170-mRNA-1 |
| chr5_3 | CDS | 38253254 | 38254097 | 38253254 | ID=Msa0810170-mRNA-1:cds;Parent=Msa0810170-mRNA-1 |
| chr5_3 | CDS | 38254542 | 38254825 | 38254542 | ID=Msa0810170-mRNA-1:cds;Parent=Msa0810170-mRNA-1 |
| chr5_3 | three_prime_UTR | 38254826 | 38256211 | 38254826 | ID=Msa0810170-mRNA-1:three_prime_utr;Parent=Msa0810170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
