AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0812460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812460 MtrunA17_Chr5g0429341 97.805 410 9 0 1 410 1 410 0.0 827
Msa0812460 MtrunA17_Chr3g0120711 68.193 415 121 7 1 409 1 410 0.0 533
Msa0812460 MtrunA17_Chr2g0322941 50.833 120 57 1 1 120 40 157 2.93e-35 130
Msa0812460 MtrunA17_Chr1g0209071 49.138 116 55 2 1 115 1 113 5.63e-30 118
Msa0812460 MtrunA17_Chr7g0268691 43.750 128 54 2 5 132 20 129 3.71e-29 117
Msa0812460 MtrunA17_Chr7g0268691 54.902 51 23 0 344 394 319 369 2.32e-11 65.1
Msa0812460 MtrunA17_Chr2g0322951 49.495 99 42 2 309 404 50 143 1.51e-24 98.6
Msa0812460 MtrunA17_Chr7g0251781 41.509 106 56 1 5 104 5 110 2.43e-21 95.1
Msa0812460 MtrunA17_Chr7g0251781 67.347 49 16 0 349 397 337 385 1.33e-14 75.1
Msa0812460 MtrunA17_Chr1g0150471 44.048 84 47 0 4 87 5 88 9.84e-20 89.4
Msa0812460 MtrunA17_Chr1g0150471 41.463 82 39 1 313 394 224 296 6.06e-12 66.2
Msa0812460 MtrunA17_Chr3g0136701 43.333 90 51 0 4 93 5 94 4.97e-19 86.7
Msa0812460 MtrunA17_Chr3g0136701 54.902 51 23 0 350 400 229 279 1.65e-11 64.7
Msa0812460 MtrunA17_Chr4g0072871 43.333 90 51 0 4 93 21 110 1.39e-18 86.7
Msa0812460 MtrunA17_Chr4g0072871 61.702 47 18 0 352 398 297 343 2.09e-11 65.1
Msa0812460 MtrunA17_Chr7g0220721 42.857 91 52 0 5 95 26 116 2.69e-17 83.2
Msa0812460 MtrunA17_Chr4g0033641 35.417 96 53 1 1 87 1 96 6.50e-14 70.9
Msa0812460 MtrunA17_Chr3g0145061 31.282 195 102 8 1 182 1 176 9.61e-14 70.5
Msa0812460 MtrunA17_Chr4g0035651 36.082 97 52 1 1 87 1 97 1.69e-13 69.7
Msa0812460 MtrunA17_Chr1g0155811 32.990 97 55 1 1 87 1 97 5.01e-13 68.9
Msa0812460 MtrunA17_Chr3g0142221 31.633 98 56 1 1 87 1 98 3.72e-12 65.5
Msa0812460 MtrunA17_Chr2g0329511 33.333 96 55 1 1 87 1 96 9.69e-12 64.7
Msa0812460 MtrunA17_Chr5g0405151 36.905 84 45 1 1 76 1 84 1.91e-11 62.8
Msa0812460 MtrunA17_Chr2g0314671 33.333 96 55 1 1 87 1 96 2.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812460 AT3G07650.3 53.066 424 131 12 1 409 1 371 5.51e-139 402
Msa0812460 AT3G07650.2 53.066 424 131 12 1 409 1 371 5.51e-139 402
Msa0812460 AT3G07650.4 53.066 424 131 12 1 409 1 371 5.51e-139 402
Msa0812460 AT3G07650.1 53.066 424 131 12 1 409 1 371 5.51e-139 402
Msa0812460 AT5G48250.1 52.706 425 132 13 1 409 1 372 9.69e-137 396
Msa0812460 AT4G15250.1 54.717 106 46 1 1 106 1 104 4.30e-35 132
Msa0812460 AT4G15250.1 54.737 95 42 1 309 403 233 326 1.84e-20 92.0
Msa0812460 AT2G33500.2 49.020 102 52 0 5 106 12 113 3.05e-33 129
Msa0812460 AT2G33500.2 70.455 44 13 0 352 395 355 398 3.26e-13 71.2
Msa0812460 AT2G33500.1 49.020 102 52 0 5 106 12 113 3.33e-33 129
Msa0812460 AT2G33500.1 70.455 44 13 0 352 395 356 399 3.27e-13 71.2
Msa0812460 AT3G21880.3 50.000 116 56 1 1 116 5 118 1.10e-32 127
Msa0812460 AT3G21880.3 48.739 119 49 4 292 407 256 365 6.97e-25 105
Msa0812460 AT3G21880.2 50.000 116 56 1 1 116 5 118 1.10e-32 127
Msa0812460 AT3G21880.2 48.739 119 49 4 292 407 256 365 6.97e-25 105
Msa0812460 AT3G21880.1 50.000 116 56 1 1 116 1 114 1.13e-32 126
Msa0812460 AT3G21880.1 48.739 119 49 4 292 407 252 361 7.07e-25 105
Msa0812460 AT1G28050.1 41.935 124 70 1 5 128 9 130 2.21e-31 124
Msa0812460 AT1G28050.1 30.168 179 110 4 224 397 261 429 3.57e-13 71.2
Msa0812460 AT1G68190.1 46.296 108 56 1 1 108 10 115 1.88e-28 115
Msa0812460 AT1G68190.3 46.296 108 56 1 1 108 10 115 1.88e-28 115
Msa0812460 AT1G68190.2 46.296 108 56 1 1 108 39 144 2.90e-28 115
Msa0812460 AT2G47890.2 49.020 102 50 1 4 105 12 111 1.87e-27 109
Msa0812460 AT2G47890.3 49.020 102 50 1 4 105 12 111 5.45e-27 109
Msa0812460 AT2G47890.1 49.020 102 50 1 4 105 12 111 7.02e-27 110
Msa0812460 AT2G47890.1 51.923 52 25 0 346 397 280 331 7.07e-11 63.5
Msa0812460 AT5G57660.1 27.295 403 198 10 5 402 22 334 2.33e-26 109
Msa0812460 AT5G24930.1 45.556 90 49 0 4 93 5 94 1.56e-20 92.8
Msa0812460 AT5G24930.1 60.784 51 20 0 348 398 290 340 1.70e-12 68.9
Msa0812460 AT2G24790.2 43.333 90 51 0 4 93 7 96 4.19e-19 85.9
Msa0812460 AT2G24790.1 43.333 90 51 0 4 93 7 96 4.28e-19 87.4
Msa0812460 AT2G24790.1 50.847 59 29 0 344 402 220 278 8.64e-12 65.9
Msa0812460 AT5G15840.1 45.055 91 50 0 5 95 20 110 1.36e-17 84.3
Msa0812460 AT5G15840.2 45.055 91 50 0 5 95 20 110 1.86e-17 82.4
Msa0812460 AT5G15850.1 45.349 86 47 0 5 90 12 97 6.35e-17 82.0
Msa0812460 AT5G15850.1 51.613 62 27 2 333 394 269 327 4.65e-11 64.3
Msa0812460 AT3G02380.1 38.835 103 57 1 5 101 16 118 1.43e-15 77.8
Msa0812460 AT3G02380.1 66.667 42 14 0 353 394 278 319 2.16e-11 65.5
Msa0812460 AT1G06040.2 35.417 96 53 1 1 87 1 96 1.54e-13 68.9
Msa0812460 AT1G06040.1 35.417 96 53 1 1 87 1 96 2.69e-13 69.7
Msa0812460 AT2G31380.1 34.375 96 54 1 1 87 1 96 2.88e-13 69.7
Msa0812460 AT1G78600.1 31.250 96 57 1 1 87 1 96 5.64e-12 66.6
Msa0812460 AT1G78600.2 31.250 96 57 1 1 87 1 96 6.38e-12 66.6
Msa0812460 AT1G75540.1 33.333 99 54 1 1 87 1 99 6.51e-12 66.6
Msa0812460 AT4G38960.1 26.286 175 107 4 1 166 1 162 1.95e-11 63.2
Msa0812460 AT4G38960.6 26.286 175 107 4 1 166 1 162 1.95e-11 63.2
Msa0812460 AT2G21320.1 36.842 95 50 2 1 87 1 93 8.82e-11 60.8

Find 136 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGACACACTCTTGCTTTC+TGG 0.079702 5_3:-42478921 None:intergenic
AATAGAACAATTACCCTTTA+TGG 0.108259 5_3:-42477472 None:intergenic
CTTTCTCTTGAAGAAATTAT+AGG 0.213186 5_3:-42482729 None:intergenic
GAAGCTTTGTTGGTATTGTT+TGG 0.246835 5_3:+42483212 Msa0812460:three_prime_UTR
GTTAGATTATAGATTAGATA+TGG 0.249687 5_3:-42477079 None:intergenic
AGAAGGGATGTCTGAGAAAA+AGG 0.263603 5_3:-42478823 None:intergenic
GAGAAAGATAGAAGAACAAT+AGG 0.270170 5_3:+42477145 Msa0812460:five_prime_UTR
CTTCCGAGCTTTCTTCAATA+TGG 0.271446 5_3:+42478799 Msa0812460:CDS
GTTTAGCTGACATCACAATT+TGG 0.280813 5_3:-42482833 None:intergenic
CAACCTATCATCATGATAAA+TGG 0.285318 5_3:-42483175 None:intergenic
GAGAAGAATAATGCAAATTA+TGG 0.299272 5_3:-42477033 None:intergenic
AAAGTCATATTTCAATGAAT+TGG 0.314071 5_3:+42482763 Msa0812460:three_prime_UTR
GATGCAGCATTGCTGCATTC+TGG 0.314142 5_3:-42481063 None:intergenic
ACCATGATTTGCCACATAAA+AGG 0.319185 5_3:-42482901 None:intergenic
AGTGTAAACTCAGCAGCTTC+TGG 0.321377 5_3:-42482593 None:intergenic
GATGAAAATTGTACATTTGA+AGG 0.322960 5_3:+42483133 Msa0812460:three_prime_UTR
CAATCAATCAATTGCTTCTC+TGG 0.329875 5_3:+42478765 Msa0812460:CDS
TTCTCACAGGGGAGCCTCCC+TGG 0.331546 5_3:+42481220 Msa0812460:CDS
AAGCTTTGTTGGTATTGTTT+GGG 0.335193 5_3:+42483213 Msa0812460:three_prime_UTR
CAATGCTGTCATGCGTTATA+AGG 0.336608 5_3:+42481287 Msa0812460:CDS
TTTCAATGAATTGGCAGTAT+AGG 0.350787 5_3:+42482772 Msa0812460:three_prime_UTR
TTTGACATGAAGATTCTTAT+GGG 0.352559 5_3:+42477420 Msa0812460:intron
CTGGTTCAAAATACGGGGTT+TGG 0.355047 5_3:-42479018 None:intergenic
TACCTTAGGCATAAGTTCAT+TGG 0.357652 5_3:-42479054 None:intergenic
CTTTCCGTAAAATAAATAAC+TGG 0.358970 5_3:-42481117 None:intergenic
TGTATTGCTAGAAGCTTTGT+TGG 0.368535 5_3:+42483202 Msa0812460:three_prime_UTR
CACTTTGTCAGAACTGTGAT+TGG 0.369730 5_3:+42478700 Msa0812460:CDS
TCAATTCATTGTTAGTCCTT+TGG 0.369876 5_3:+42482944 Msa0812460:three_prime_UTR
TTGCGGAGACCAGAGGTCTT+TGG 0.371869 5_3:+42478524 Msa0812460:CDS
TCACATGCTTCACCCGTAGA+AGG 0.388659 5_3:-42478840 None:intergenic
ATGCCATTTATCATGATGAT+AGG 0.395074 5_3:+42483172 Msa0812460:three_prime_UTR
TTGAAGGTTATGTATAGAAT+AGG 0.407082 5_3:+42483149 Msa0812460:three_prime_UTR
TTGTCCTGCATACTTGTAGA+TGG 0.407622 5_3:+42483083 Msa0812460:three_prime_UTR
TTTCCCCAGCTTTGACGAAC+CGG 0.416476 5_3:-42482543 None:intergenic
CAGCTTCTGGTTTGACTCAA+AGG 0.419857 5_3:-42482580 None:intergenic
CGGGCGCCTGGTTCAAAATA+CGG 0.425108 5_3:-42479025 None:intergenic
AAAGGCCGGTTCGTCAAAGC+TGG 0.426807 5_3:+42482538 Msa0812460:CDS
TTGCTTCTCTGGCTGTCCTT+CGG 0.430721 5_3:+42478776 Msa0812460:CDS
CATAAGTTCATTGGAAGATC+CGG 0.431154 5_3:-42479045 None:intergenic
TTTCTCAGACATCCCTTCTA+CGG 0.434188 5_3:+42478827 Msa0812460:CDS
CCAGAAAGCAAGAGTGTGTC+TGG 0.441871 5_3:+42478921 Msa0812460:CDS
GACACTTATCATGCCATCTC+TGG 0.444997 5_3:-42483039 None:intergenic
GGGCGCCTGGTTCAAAATAC+GGG 0.445144 5_3:-42479024 None:intergenic
AGCGAAGTGTGGTTTAAAGA+TGG 0.451015 5_3:+42478485 Msa0812460:exon
ACGGGGTTTGGCACTTGACT+CGG 0.451656 5_3:-42479006 None:intergenic
AGAAAAGTGACAACAGTGCC+AGG 0.456927 5_3:+42478892 Msa0812460:CDS
AGCAGATTGAATAGAATTCT+CGG 0.457491 5_3:-42481256 None:intergenic
CTGCTGTGTTTATGTTGAGA+TGG 0.458402 5_3:-42477116 None:intergenic
TTAGATTATAGATTAGATAT+GGG 0.459668 5_3:-42477078 None:intergenic
TAGTATATTCTTCTAAAGAA+TGG 0.459767 5_3:+42482662 Msa0812460:three_prime_UTR
GCAGATTGAATAGAATTCTC+GGG 0.465896 5_3:-42481255 None:intergenic
GTGTTTATGTTGAGATGGAT+TGG 0.472181 5_3:-42477111 None:intergenic
AGCTTCTGGTTTGACTCAAA+GGG 0.472965 5_3:-42482579 None:intergenic
TTCTCAGACATCCCTTCTAC+GGG 0.474377 5_3:+42478828 Msa0812460:CDS
CTCGGGGCAAGGAGGACACC+AGG 0.476613 5_3:-42481238 None:intergenic
ATTCAAGGCACATTGCTTGA+AGG 0.478106 5_3:-42482871 None:intergenic
ATGAATTGGCAGTATAGGCT+TGG 0.478583 5_3:+42482777 Msa0812460:three_prime_UTR
CATTGGAAGATCCGGGCGCC+TGG 0.483294 5_3:-42479037 None:intergenic
TTCAAGGCACATTGCTTGAA+GGG 0.487363 5_3:-42482870 None:intergenic
TTTGGCCACGATATTGTTCA+CGG 0.487795 5_3:+42482962 Msa0812460:three_prime_UTR
AGAAAGTAAGATATGCTTCT+CGG 0.490575 5_3:+42482485 Msa0812460:CDS
CGGGGTTTGGCACTTGACTC+GGG 0.498437 5_3:-42479005 None:intergenic
TAGTGCAGGAGCCTTTCTGC+TGG 0.501364 5_3:-42480081 None:intergenic
ATAAAAGGAATCAAAATTCA+AGG 0.503198 5_3:-42482886 None:intergenic
CACAATTTGGATATCCTTCG+CGG 0.503266 5_3:-42482820 None:intergenic
TTGGATATCCTTCGCGGTGA+AGG 0.508300 5_3:-42482814 None:intergenic
TAATTTCTTCAAGAGAAAGA+AGG 0.509289 5_3:+42482733 Msa0812460:three_prime_UTR
CTTGCTTTCTGGAGGAACCC+TGG 0.509409 5_3:-42478910 None:intergenic
AGAAAGATAGAAGAACAATA+GGG 0.511537 5_3:+42477146 Msa0812460:five_prime_UTR
TCGATCACACGACAAACATA+AGG 0.512174 5_3:-42478571 None:intergenic
TTGCCTCTTGTGTGTTGAAG+AGG 0.512520 5_3:-42478745 None:intergenic
TAGATTAGATATGGGAGGGT+TGG 0.513153 5_3:-42477070 None:intergenic
TGATTTCAACATAGATGAGA+TGG 0.515486 5_3:+42480127 Msa0812460:CDS
ACTTCTTCAATGCTTCTCAC+AGG 0.517555 5_3:+42481207 Msa0812460:CDS
TCAGAAAACGTGTGAAAGGC+CGG 0.518186 5_3:+42482524 Msa0812460:CDS
GCGAAGTGTGGTTTAAAGAT+GGG 0.523464 5_3:+42478486 Msa0812460:exon
CTCTTGTGTGTTGAAGAGGA+TGG 0.523560 5_3:-42478741 None:intergenic
TTCTTTCCTTTCGTAGAACA+TGG 0.525351 5_3:-42482622 None:intergenic
TGTTAACGCCAGAAAATGAA+AGG 0.527986 5_3:-42481149 None:intergenic
TTCCAATGAACTTATGCCTA+AGG 0.528385 5_3:+42479052 Msa0812460:CDS
ATAAGTTCATTGGAAGATCC+GGG 0.534550 5_3:-42479044 None:intergenic
GGCAGTACACCAAAGACCTC+TGG 0.535687 5_3:-42478533 None:intergenic
ATCTCCATCTACAAGTATGC+AGG 0.537944 5_3:-42483087 None:intergenic
TCTTATGGGAGCTTGAGATA+AGG 0.538875 5_3:+42477434 Msa0812460:five_prime_UTR
CTTCTTCAATGCTTCTCACA+GGG 0.540534 5_3:+42481208 Msa0812460:CDS
GATATGCTTCTCGGAAGGCA+AGG 0.543762 5_3:+42482494 Msa0812460:CDS
ATTATAGATTAGATATGGGA+GGG 0.544249 5_3:-42477074 None:intergenic
TGAATAGAATTCTCGGGGCA+AGG 0.546742 5_3:-42481249 None:intergenic
AACTGTGATTGGTCAGCTCA+TGG 0.551188 5_3:+42478711 Msa0812460:CDS
CACATGCTTCACCCGTAGAA+GGG 0.554759 5_3:-42478839 None:intergenic
CAGCATTGCTGCATTCTGGT+TGG 0.554970 5_3:-42481059 None:intergenic
GGCTCCTGCGTTAAATCAGA+CGG 0.557097 5_3:-42482708 None:intergenic
TGTGTCTGGTTCAGCTCAAG+TGG 0.560306 5_3:+42478935 Msa0812460:CDS
ATTGGCAGTATAGGCTTGGA+AGG 0.564149 5_3:+42482781 Msa0812460:three_prime_UTR
AAAGACATGTCTGCTAGTGC+TGG 0.564402 5_3:+42480248 Msa0812460:CDS
TCAACACACCTCACATATGC+AGG 0.564586 5_3:-42478666 None:intergenic
TTATCATCTTCACATAGTGC+AGG 0.566113 5_3:-42480095 None:intergenic
TCTGGCAGTTCTACATACAT+AGG 0.568257 5_3:-42483021 None:intergenic
TCAAGGCGCTGTTGCTGCTG+AGG 0.568931 5_3:+42480283 Msa0812460:CDS
GATGTCAGAAAACGTGTGAA+AGG 0.569991 5_3:+42482520 Msa0812460:CDS
AGTGCAGGAGCCTTTCTGCT+GGG 0.574032 5_3:-42480080 None:intergenic
ATATGCTTCTCGGAAGGCAA+GGG 0.575562 5_3:+42482495 Msa0812460:CDS
GTTACTATGTCCCAGCAGAA+AGG 0.575589 5_3:+42480070 Msa0812460:intron
GGGCCATATTGAAGAAAGCT+CGG 0.577030 5_3:-42478802 None:intergenic
GATTATAGATTAGATATGGG+AGG 0.581205 5_3:-42477075 None:intergenic
GTATGTAGAACTGCCAGAGA+TGG 0.586112 5_3:+42483026 Msa0812460:three_prime_UTR
AAGGCCGGTTCGTCAAAGCT+GGG 0.589643 5_3:+42482539 Msa0812460:CDS
GACACACTCTTGCTTTCTGG+AGG 0.592085 5_3:-42478918 None:intergenic
GTGTGTTGAAGAGGATGGAT+TGG 0.598104 5_3:-42478736 None:intergenic
TCAAGGCACATTGCTTGAAG+GGG 0.599759 5_3:-42482869 None:intergenic
AGATATGGGAGGGTTGGTGT+AGG 0.607336 5_3:-42477064 None:intergenic
TTAAAGGAGCAAGCGAAGTG+TGG 0.607491 5_3:+42478474 Msa0812460:intron
ACGCGCATCCTTCACCGCGA+AGG 0.607907 5_3:+42482806 Msa0812460:three_prime_UTR
TGTGAAGATGATAAGTTGCT+TGG 0.611126 5_3:+42480104 Msa0812460:CDS
AGTAAGATATGCTTCTCGGA+AGG 0.619208 5_3:+42482489 Msa0812460:CDS
GAAGAAAGCTCGGAAGCCGA+AGG 0.625937 5_3:-42478792 None:intergenic
CATCCTCTTCAACACACAAG+AGG 0.627085 5_3:+42478742 Msa0812460:CDS
GTTAACAAAGATACTAGTGC+TGG 0.627470 5_3:+42481165 Msa0812460:CDS
TCGGGGCAAGGAGGACACCA+GGG 0.628096 5_3:-42481237 None:intergenic
CAGATTGAATAGAATTCTCG+GGG 0.628312 5_3:-42481254 None:intergenic
GTGAACAATATCGTGGCCAA+AGG 0.629956 5_3:-42482960 None:intergenic
GGCGCCTGGTTCAAAATACG+GGG 0.642690 5_3:-42479023 None:intergenic
GCTGGTGATTCAAATTGTCA+AGG 0.642760 5_3:+42480266 Msa0812460:CDS
CAAGAACACTTGTATGCGAG+AGG 0.643376 5_3:+42478631 Msa0812460:CDS
TTCTTCAATGCTTCTCACAG+GGG 0.656918 5_3:+42481209 Msa0812460:CDS
AGGCCGGTTCGTCAAAGCTG+GGG 0.660571 5_3:+42482540 Msa0812460:CDS
GGGCAAGGAGGACACCAGGG+AGG 0.662427 5_3:-42481234 None:intergenic
GAAAAGTGACAACAGTGCCA+GGG 0.664482 5_3:+42478893 Msa0812460:CDS
TTGGCAGTATAGGCTTGGAA+GGG 0.669630 5_3:+42482782 Msa0812460:three_prime_UTR
GAAGCATGTGAACATAAACT+CGG 0.675189 5_3:+42478852 Msa0812460:CDS
GCAAACCGTGAACAATATCG+TGG 0.692627 5_3:-42482967 None:intergenic
ATTTACAACCTGCATATGTG+AGG 0.728365 5_3:+42478658 Msa0812460:CDS
ATAGAATTCTCGGGGCAAGG+AGG 0.730840 5_3:-42481246 None:intergenic
GCTGGTGACTATCAAGAGTG+TGG 0.743394 5_3:+42481183 Msa0812460:CDS
CAAACCGTCTGATTTAACGC+AGG 0.745925 5_3:+42482704 Msa0812460:three_prime_UTR
ATAAGGAAGCAGCATCAGAG+CGG 0.751405 5_3:-42478554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTTATATTTTTTTTTATT+TGG + chr5_3:42477586-42477605 Msa0812460:intron 10.0%
!!! TTATATTTTTTTTTATTTGG+TGG + chr5_3:42477589-42477608 Msa0812460:intron 10.0%
!! TAAATGTCTTTATTAAAAAA+CGG - chr5_3:42481560-42481579 None:intergenic 10.0%
!! TTAGATTATAGATTAGATAT+GGG - chr5_3:42477081-42477100 None:intergenic 15.0%
!! TTAATGTTATTGTTTGATAT+TGG + chr5_3:42478059-42478078 Msa0812460:intron 15.0%
!!! AGCTTCAATATTTTTTTTTT+AGG + chr5_3:42478395-42478414 Msa0812460:intron 15.0%
!!! TGGAATTGTTATTTAATTAA+AGG + chr5_3:42478458-42478477 Msa0812460:intron 15.0%
!! TTTATATGTTAGTTGTTTAA+TGG + chr5_3:42479316-42479335 Msa0812460:intron 15.0%
!!! ACATACTTTTTTAATCAAAT+TGG - chr5_3:42479550-42479569 None:intergenic 15.0%
!! AAATAAAATAATACTACTTG+TGG + chr5_3:42481918-42481937 Msa0812460:intron 15.0%
!! GTTAGATTATAGATTAGATA+TGG - chr5_3:42477082-42477101 None:intergenic 20.0%
!!! TTTTTTTGAAGAAATTCTCT+AGG + chr5_3:42477202-42477221 Msa0812460:intron 20.0%
!!! TTTTTTGAAGAAATTCTCTA+GGG + chr5_3:42477203-42477222 Msa0812460:intron 20.0%
!!! AAAGTTGAAATTTTCCATAA+AGG + chr5_3:42477458-42477477 Msa0812460:five_prime_UTR 20.0%
!!! AAGTTGAAATTTTCCATAAA+GGG + chr5_3:42477459-42477478 Msa0812460:five_prime_UTR 20.0%
!! TTGATGTTGTAATGAAATTA+TGG + chr5_3:42477566-42477585 Msa0812460:intron 20.0%
!!! ACTTTTTTGTACTATAATGA+TGG + chr5_3:42477612-42477631 Msa0812460:intron 20.0%
!!! ACAACTAATTAATCATTTTC+CGG - chr5_3:42477680-42477699 None:intergenic 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG - chr5_3:42478209-42478228 None:intergenic 20.0%
!! TAATAATTTGAGAAAATGGA+AGG + chr5_3:42478210-42478229 Msa0812460:intron 20.0%
!! AATAATTTGAGAAAATGGAA+GGG + chr5_3:42478211-42478230 Msa0812460:intron 20.0%
!! TTATCTATAACTTAAGATAG+AGG - chr5_3:42479211-42479230 None:intergenic 20.0%
!! CATTCATATCAATTACATAA+TGG - chr5_3:42479612-42479631 None:intergenic 20.0%
!! TGAATTAGTTACTGTATTTA+TGG + chr5_3:42479641-42479660 Msa0812460:intron 20.0%
!! CCAAAATTATAGTTAACAAA+GGG - chr5_3:42480325-42480344 None:intergenic 20.0%
!! AAATGAATATAAAGGACTTA+AGG - chr5_3:42480807-42480826 None:intergenic 20.0%
!! AAACCTTCAAATGAATATAA+AGG - chr5_3:42480815-42480834 None:intergenic 20.0%
!!! TGAACCAGTTATTTATTTTA+CGG + chr5_3:42481113-42481132 Msa0812460:CDS 20.0%
!!! TAATAAAGACATTTAAAGCT+AGG + chr5_3:42481565-42481584 Msa0812460:intron 20.0%
!!! GAAAGAATAAGAGATTTTTA+AGG - chr5_3:42481700-42481719 None:intergenic 20.0%
!!! TATTTATAGTTTGCTTTTGT+TGG + chr5_3:42481723-42481742 Msa0812460:intron 20.0%
!!! AAAGGTATTAAATATTGTAC+TGG - chr5_3:42482191-42482210 None:intergenic 20.0%
!!! TGCAACTACTTTAAAAATAA+GGG - chr5_3:42482225-42482244 None:intergenic 20.0%
!!! TTGCAACTACTTTAAAAATA+AGG - chr5_3:42482226-42482245 None:intergenic 20.0%
!! TTAAAGTAGTTGCAAATATA+TGG + chr5_3:42482231-42482250 Msa0812460:intron 20.0%
!!! TGCTATTTTGCATTTAAAAA+TGG + chr5_3:42482298-42482317 Msa0812460:intron 20.0%
!!! TAGTATATTCTTCTAAAGAA+TGG + chr5_3:42482662-42482681 Msa0812460:three_prime_UTR 20.0%
!! AAAGTCATATTTCAATGAAT+TGG + chr5_3:42482763-42482782 Msa0812460:three_prime_UTR 20.0%
!! ATAAAAGGAATCAAAATTCA+AGG - chr5_3:42482889-42482908 None:intergenic 20.0%
! GAGAAGAATAATGCAAATTA+TGG - chr5_3:42477036-42477055 None:intergenic 25.0%
! ATTATAGATTAGATATGGGA+GGG - chr5_3:42477077-42477096 None:intergenic 25.0%
! AGAAAGATAGAAGAACAATA+GGG + chr5_3:42477146-42477165 Msa0812460:five_prime_UTR 25.0%
! TACAAGATCTATAAGGAAAA+GGG - chr5_3:42477311-42477330 None:intergenic 25.0%
!! TTTTGACATGAAGATTCTTA+TGG + chr5_3:42477419-42477438 Msa0812460:intron 25.0%
! TTTGACATGAAGATTCTTAT+GGG + chr5_3:42477420-42477439 Msa0812460:intron 25.0%
! AATAGAACAATTACCCTTTA+TGG - chr5_3:42477475-42477494 None:intergenic 25.0%
!!! TGGAAATGCATTTTTATTTG+AGG + chr5_3:42477632-42477651 Msa0812460:intron 25.0%
! TTGTGAGTTTGACAAAATTA+CGG + chr5_3:42477794-42477813 Msa0812460:intron 25.0%
! ATGATAAATTAGTACGTGTT+TGG - chr5_3:42477899-42477918 None:intergenic 25.0%
! TAGAAAGAATCATATGCTAT+TGG + chr5_3:42477926-42477945 Msa0812460:intron 25.0%
!! ATGAATTTTTATGCATCTCT+AGG - chr5_3:42478005-42478024 None:intergenic 25.0%
!! AAGAGACATCTCTAAAAAAA+GGG - chr5_3:42478040-42478059 None:intergenic 25.0%
!! AAAGAGACATCTCTAAAAAA+AGG - chr5_3:42478041-42478060 None:intergenic 25.0%
! AACTAGTAATTTATGGAACT+GGG - chr5_3:42478108-42478127 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG + chr5_3:42478206-42478225 Msa0812460:intron 25.0%
! AAATAACTGATATATGCATG+TGG - chr5_3:42478248-42478267 None:intergenic 25.0%
! AAGCTATTAATTAGATGTGA+TGG + chr5_3:42479236-42479255 Msa0812460:intron 25.0%
!! TTCTAGTCAAATGATTCTTT+TGG + chr5_3:42479363-42479382 Msa0812460:intron 25.0%
! TAATTGATATGAATGTCGTT+AGG + chr5_3:42479617-42479636 Msa0812460:intron 25.0%
! GAACAATTATACATGTACAT+AGG - chr5_3:42479825-42479844 None:intergenic 25.0%
! TGTACATGTATAATTGTTCT+TGG + chr5_3:42479826-42479845 Msa0812460:intron 25.0%
! GTACATGTATAATTGTTCTT+GGG + chr5_3:42479827-42479846 Msa0812460:intron 25.0%
!! TTTTGAACTTGAGAACTATA+CGG + chr5_3:42480151-42480170 Msa0812460:CDS 25.0%
!!! TCTGAAGAGTTTTTTGAAAA+TGG + chr5_3:42480200-42480219 Msa0812460:CDS 25.0%
!! CCCTTTGTTAACTATAATTT+TGG + chr5_3:42480322-42480341 Msa0812460:intron 25.0%
! GCCAAAATTATAGTTAACAA+AGG - chr5_3:42480326-42480345 None:intergenic 25.0%
!! TATTAAGTGTTGTCAAATAG+TGG + chr5_3:42480547-42480566 Msa0812460:intron 25.0%
! AGTCCTTTATATTCATTTGA+AGG + chr5_3:42480809-42480828 Msa0812460:intron 25.0%
! CTTTCCGTAAAATAAATAAC+TGG - chr5_3:42481120-42481139 None:intergenic 25.0%
!!! CAGTTATTTATTTTACGGAA+AGG + chr5_3:42481118-42481137 Msa0812460:CDS 25.0%
! GATACTATTTACATATCCAA+TGG + chr5_3:42481345-42481364 Msa0812460:intron 25.0%
! TAAAATTATATCAACGCCAT+TGG - chr5_3:42481364-42481383 None:intergenic 25.0%
!! TAGGAATGTGTTATTATTCA+TGG - chr5_3:42481516-42481535 None:intergenic 25.0%
! TCTCTATTGATCTTATTCTT+AGG + chr5_3:42481663-42481682 Msa0812460:intron 25.0%
!!! AAGAGATTTTTAAGGTAGTT+TGG - chr5_3:42481692-42481711 None:intergenic 25.0%
! AATAATACTACTTGTGGAAA+TGG + chr5_3:42481924-42481943 Msa0812460:intron 25.0%
! TATTTAATACCTTTCTCCAA+TGG + chr5_3:42482197-42482216 Msa0812460:intron 25.0%
!!! TTTAAAAATAAGGGTACCAT+TGG - chr5_3:42482216-42482235 None:intergenic 25.0%
! TTACTTATAATCTCAAAGCT+TGG + chr5_3:42482410-42482429 Msa0812460:intron 25.0%
! CTTTCTCTTGAAGAAATTAT+AGG - chr5_3:42482732-42482751 None:intergenic 25.0%
! TAATTTCTTCAAGAGAAAGA+AGG + chr5_3:42482733-42482752 Msa0812460:three_prime_UTR 25.0%
!!! GAATTTTGATTCCTTTTATG+TGG + chr5_3:42482890-42482909 Msa0812460:three_prime_UTR 25.0%
! GATGAAAATTGTACATTTGA+AGG + chr5_3:42483133-42483152 Msa0812460:three_prime_UTR 25.0%
! TTGAAGGTTATGTATAGAAT+AGG + chr5_3:42483149-42483168 Msa0812460:three_prime_UTR 25.0%
GATTATAGATTAGATATGGG+AGG - chr5_3:42477078-42477097 None:intergenic 30.0%
GAGAAAGATAGAAGAACAAT+AGG + chr5_3:42477145-42477164 Msa0812460:five_prime_UTR 30.0%
GTACAAGATCTATAAGGAAA+AGG - chr5_3:42477312-42477331 None:intergenic 30.0%
ACTGACAAAAAAAGTCAGAA+AGG - chr5_3:42477500-42477519 None:intergenic 30.0%
!! AAAGTCTCTCGTTTATTTTC+CGG + chr5_3:42477658-42477677 Msa0812460:intron 30.0%
TGTCTTAATTAGTGCATGTT+TGG + chr5_3:42477766-42477785 Msa0812460:intron 30.0%
TAAATTGTACCAAATCACTG+TGG + chr5_3:42477841-42477860 Msa0812460:intron 30.0%
GGTATGTTATCGAGAATTAA+AGG - chr5_3:42477984-42478003 None:intergenic 30.0%
GAACTAGTAATTTATGGAAC+TGG - chr5_3:42478109-42478128 None:intergenic 30.0%
GTTCCATAAATTACTAGTTC+AGG + chr5_3:42478109-42478128 Msa0812460:intron 30.0%
TTGCCTGAACTAGTAATTTA+TGG - chr5_3:42478115-42478134 None:intergenic 30.0%
GTTAACTTATTATTCTCCCT+TGG + chr5_3:42478293-42478312 Msa0812460:intron 30.0%
AATATTGAAGCTGAACTATG+TGG - chr5_3:42478387-42478406 None:intergenic 30.0%
GTGTTAGTCATTACTAATCA+TGG + chr5_3:42478438-42478457 Msa0812460:intron 30.0%
!!! TTTGTTTTTGCTTGGAAGAT+CGG - chr5_3:42478961-42478980 None:intergenic 30.0%
AAATCATGAAGCTATACCTT+AGG - chr5_3:42479071-42479090 None:intergenic 30.0%
TTCTCTGAATGAATTGTTTG+TGG + chr5_3:42479159-42479178 Msa0812460:intron 30.0%
! GTTTGTGGAAATTTGTTTGA+CGG + chr5_3:42479174-42479193 Msa0812460:intron 30.0%
! TAGTCAAATGATTCTTTTGG+CGG + chr5_3:42479366-42479385 Msa0812460:intron 30.0%
TACAGACACGAAACAATAAA+GGG - chr5_3:42479408-42479427 None:intergenic 30.0%
ATACAGACACGAAACAATAA+AGG - chr5_3:42479409-42479428 None:intergenic 30.0%
TAGGGAAATGAAATGTTAAG+TGG + chr5_3:42479767-42479786 Msa0812460:intron 30.0%
TGTATAATTGTTCTTGGGTT+TGG + chr5_3:42479832-42479851 Msa0812460:intron 30.0%
TTTAGTGAAATGAGTTACAC+AGG + chr5_3:42480008-42480027 Msa0812460:intron 30.0%
CGTGAGAGATTAAATAAGAA+AGG - chr5_3:42480039-42480058 None:intergenic 30.0%
TGATTTCAACATAGATGAGA+TGG + chr5_3:42480127-42480146 Msa0812460:CDS 30.0%
TTTCAAAAAACTCTTCAGAG+TGG - chr5_3:42480199-42480218 None:intergenic 30.0%
!!! GAAGAGTTTTTTGAAAATGG+TGG + chr5_3:42480203-42480222 Msa0812460:CDS 30.0%
AAACTTGAACTAATTGCTAC+TGG + chr5_3:42480444-42480463 Msa0812460:intron 30.0%
! AGAGAACATTTAGTTTCCTT+TGG + chr5_3:42480935-42480954 Msa0812460:intron 30.0%
! GAGAACATTTAGTTTCCTTT+GGG + chr5_3:42480936-42480955 Msa0812460:intron 30.0%
! AGAACATTTAGTTTCCTTTG+GGG + chr5_3:42480937-42480956 Msa0812460:intron 30.0%
! CAATCAAACCTTTCATTTTC+TGG + chr5_3:42481141-42481160 Msa0812460:CDS 30.0%
AGCAGATTGAATAGAATTCT+CGG - chr5_3:42481259-42481278 None:intergenic 30.0%
! CGTTGATATAATTTTACCTG+TGG + chr5_3:42481368-42481387 Msa0812460:intron 30.0%
!! ATCTGCTCATGTTTTTGTTA+TGG + chr5_3:42481417-42481436 Msa0812460:intron 30.0%
TGGTGTAAAACAATGAGAAT+AGG - chr5_3:42481496-42481515 None:intergenic 30.0%
! TAAAGCTAGGTCCATTTTAA+TGG + chr5_3:42481578-42481597 Msa0812460:intron 30.0%
CATCTGGAAAACCATTAAAA+TGG - chr5_3:42481592-42481611 None:intergenic 30.0%
! TCACAAAGTGTTATGGTAAA+TGG - chr5_3:42481766-42481785 None:intergenic 30.0%
! TGGAATAAAAAGGTATAGCA+TGG - chr5_3:42481827-42481846 None:intergenic 30.0%
CTGAAAACTGTGGAATAAAA+AGG - chr5_3:42481837-42481856 None:intergenic 30.0%
TTCAGTTCACTGAAATGATT+AGG + chr5_3:42481852-42481871 Msa0812460:intron 30.0%
GCGGTAGTAATAAATAGAAT+AGG + chr5_3:42481874-42481893 Msa0812460:intron 30.0%
TACAATATTCTATCCCTCTT+TGG - chr5_3:42482062-42482081 None:intergenic 30.0%
AGAGGGATAGAATATTGTAT+TGG + chr5_3:42482063-42482082 Msa0812460:intron 30.0%
GTAATAGTTATTCTTCTCAG+TGG - chr5_3:42482101-42482120 None:intergenic 30.0%
TCATATTTATGTGTCCCATT+TGG - chr5_3:42482359-42482378 None:intergenic 30.0%
CTTTCTTATCAAACCTGAAA+TGG - chr5_3:42482471-42482490 None:intergenic 30.0%
AGAAAGTAAGATATGCTTCT+CGG + chr5_3:42482485-42482504 Msa0812460:CDS 30.0%
! TTTTAACCATGTTCTACGAA+AGG + chr5_3:42482616-42482635 Msa0812460:three_prime_UTR 30.0%
TTTCAATGAATTGGCAGTAT+AGG + chr5_3:42482772-42482791 Msa0812460:three_prime_UTR 30.0%
TCAATTCATTGTTAGTCCTT+TGG + chr5_3:42482944-42482963 Msa0812460:three_prime_UTR 30.0%
! ATGCCATTTATCATGATGAT+AGG + chr5_3:42483172-42483191 Msa0812460:three_prime_UTR 30.0%
CAACCTATCATCATGATAAA+TGG - chr5_3:42483178-42483197 None:intergenic 30.0%
!! AAGCTTTGTTGGTATTGTTT+GGG + chr5_3:42483213-42483232 Msa0812460:three_prime_UTR 30.0%
!! AGTTGCAGTTCTTTTAAAGA+GGG - chr5_3:42483271-42483290 None:intergenic 30.0%
!! TAGTTGCAGTTCTTTTAAAG+AGG - chr5_3:42483272-42483291 None:intergenic 30.0%
GTGTTTATGTTGAGATGGAT+TGG - chr5_3:42477114-42477133 None:intergenic 35.0%
! CAGAGAGTACAAGATCTATA+AGG - chr5_3:42477318-42477337 None:intergenic 35.0%
ACTGTGGCATAAAGTGATTA+TGG + chr5_3:42477857-42477876 Msa0812460:intron 35.0%
TTAGTACGTGTTTGGATTGA+CGG - chr5_3:42477891-42477910 None:intergenic 35.0%
GAAAATTCAACTTCTGCCAA+GGG - chr5_3:42478312-42478331 None:intergenic 35.0%
TGAAAATTCAACTTCTGCCA+AGG - chr5_3:42478313-42478332 None:intergenic 35.0%
ATTGTGCTTCCTTTATCACA+TGG + chr5_3:42478340-42478359 Msa0812460:intron 35.0%
GTTGTGAAACCATGTGATAA+AGG - chr5_3:42478352-42478371 None:intergenic 35.0%
! GGTTCTTTATGCGATTTTTG+CGG + chr5_3:42478507-42478526 Msa0812460:CDS 35.0%
ATTTACAACCTGCATATGTG+AGG + chr5_3:42478658-42478677 Msa0812460:CDS 35.0%
CAATCAATCAATTGCTTCTC+TGG + chr5_3:42478765-42478784 Msa0812460:CDS 35.0%
GAAGCATGTGAACATAAACT+CGG + chr5_3:42478852-42478871 Msa0812460:CDS 35.0%
CTTCCAAGCAAAAACAAATC+TGG + chr5_3:42478963-42478982 Msa0812460:CDS 35.0%
ATAAGTTCATTGGAAGATCC+GGG - chr5_3:42479047-42479066 None:intergenic 35.0%
CATAAGTTCATTGGAAGATC+CGG - chr5_3:42479048-42479067 None:intergenic 35.0%
TTCCAATGAACTTATGCCTA+AGG + chr5_3:42479052-42479071 Msa0812460:CDS 35.0%
TACCTTAGGCATAAGTTCAT+TGG - chr5_3:42479057-42479076 None:intergenic 35.0%
CATATTGCAGTTACAAGACT+AGG - chr5_3:42479103-42479122 None:intergenic 35.0%
ACAGACACGAAACAATAAAG+GGG - chr5_3:42479407-42479426 None:intergenic 35.0%
GTTCAAGCTACTGATAAATC+AGG - chr5_3:42479456-42479475 None:intergenic 35.0%
TCATCTCAAATTGCAGTCTT+TGG + chr5_3:42479734-42479753 Msa0812460:intron 35.0%
CATCTCAAATTGCAGTCTTT+GGG + chr5_3:42479735-42479754 Msa0812460:intron 35.0%
!! AGTCTTTGGGTTTTGATGAT+AGG + chr5_3:42479748-42479767 Msa0812460:intron 35.0%
!! GTCTTTGGGTTTTGATGATA+GGG + chr5_3:42479749-42479768 Msa0812460:intron 35.0%
ATACATGTACATAGGTGACA+AGG - chr5_3:42479817-42479836 None:intergenic 35.0%
TTATCATCTTCACATAGTGC+AGG - chr5_3:42480098-42480117 None:intergenic 35.0%
TGTGAAGATGATAAGTTGCT+TGG + chr5_3:42480104-42480123 Msa0812460:CDS 35.0%
CTCAGTTATGTGACATGTAA+CGG - chr5_3:42480371-42480390 None:intergenic 35.0%
TATCACTATTGCACCAATGT+TGG - chr5_3:42480414-42480433 None:intergenic 35.0%
TTCATAGTGTTGTCCAATAC+CGG + chr5_3:42480467-42480486 Msa0812460:intron 35.0%
TTGTTCTGCTATACGCTATT+TGG + chr5_3:42480524-42480543 Msa0812460:intron 35.0%
CTATAGACTGATCTTCTAGT+CGG + chr5_3:42480696-42480715 Msa0812460:intron 35.0%
! GAACATTTAGTTTCCTTTGG+GGG + chr5_3:42480938-42480957 Msa0812460:intron 35.0%
TATAAAACTAAGACCCCCAA+AGG - chr5_3:42480954-42480973 None:intergenic 35.0%
!!! TTTGGGGGTCTTAGTTTTAT+AGG + chr5_3:42480953-42480972 Msa0812460:intron 35.0%
TGTTAACGCCAGAAAATGAA+AGG - chr5_3:42481152-42481171 None:intergenic 35.0%
GTTAACAAAGATACTAGTGC+TGG + chr5_3:42481165-42481184 Msa0812460:CDS 35.0%
CAGATTGAATAGAATTCTCG+GGG - chr5_3:42481257-42481276 None:intergenic 35.0%
GCAGATTGAATAGAATTCTC+GGG - chr5_3:42481258-42481277 None:intergenic 35.0%
! TTTGATAGAGTTGATCGAGT+AGG - chr5_3:42481535-42481554 None:intergenic 35.0%
AGAAAACCTTAGACAACATC+TGG - chr5_3:42481608-42481627 None:intergenic 35.0%
CAATAGAGACATTAGAGAGA+AGG - chr5_3:42481652-42481671 None:intergenic 35.0%
! AGTTCGTTCACAAAGTGTTA+TGG - chr5_3:42481773-42481792 None:intergenic 35.0%
TTTCAGTGAACTGAAAACTG+TGG - chr5_3:42481847-42481866 None:intergenic 35.0%
AGTTCACTGAAATGATTAGG+CGG + chr5_3:42481855-42481874 Msa0812460:intron 35.0%
AACGCATAATATGAGACAGA+GGG - chr5_3:42482125-42482144 None:intergenic 35.0%
AAACGCATAATATGAGACAG+AGG - chr5_3:42482126-42482145 None:intergenic 35.0%
TCAAAGCTTGGTTGCTATAT+GGG + chr5_3:42482422-42482441 Msa0812460:intron 35.0%
! GTTATGATGAATGCCATTTC+AGG + chr5_3:42482455-42482474 Msa0812460:intron 35.0%
TTCTTTCCTTTCGTAGAACA+TGG - chr5_3:42482625-42482644 None:intergenic 35.0%
GTTTAGCTGACATCACAATT+TGG - chr5_3:42482836-42482855 None:intergenic 35.0%
! TCCTTTTATGTGGCAAATCA+TGG + chr5_3:42482900-42482919 Msa0812460:three_prime_UTR 35.0%
! ACCATGATTTGCCACATAAA+AGG - chr5_3:42482904-42482923 None:intergenic 35.0%
! TGTATTGCTAGAAGCTTTGT+TGG + chr5_3:42483202-42483221 Msa0812460:three_prime_UTR 35.0%
!! GAAGCTTTGTTGGTATTGTT+TGG + chr5_3:42483212-42483231 Msa0812460:three_prime_UTR 35.0%
TAGATTAGATATGGGAGGGT+TGG - chr5_3:42477073-42477092 None:intergenic 40.0%
CTGCTGTGTTTATGTTGAGA+TGG - chr5_3:42477119-42477138 None:intergenic 40.0%
TCTTATGGGAGCTTGAGATA+AGG + chr5_3:42477434-42477453 Msa0812460:five_prime_UTR 40.0%
CACTTTATGCCACAGTGATT+TGG - chr5_3:42477853-42477872 None:intergenic 40.0%
AGCGAAGTGTGGTTTAAAGA+TGG + chr5_3:42478485-42478504 Msa0812460:exon 40.0%
GCGAAGTGTGGTTTAAAGAT+GGG + chr5_3:42478486-42478505 Msa0812460:exon 40.0%
TCGATCACACGACAAACATA+AGG - chr5_3:42478574-42478593 None:intergenic 40.0%
CACTTTGTCAGAACTGTGAT+TGG + chr5_3:42478700-42478719 Msa0812460:CDS 40.0%
CTTCCGAGCTTTCTTCAATA+TGG + chr5_3:42478799-42478818 Msa0812460:CDS 40.0%
GAAGGGATGTCTGAGAAAAA+GGG - chr5_3:42478825-42478844 None:intergenic 40.0%
AGAAGGGATGTCTGAGAAAA+AGG - chr5_3:42478826-42478845 None:intergenic 40.0%
TTTCTCAGACATCCCTTCTA+CGG + chr5_3:42478827-42478846 Msa0812460:CDS 40.0%
!!! ACGCCAGATTTGTTTTTGCT+TGG - chr5_3:42478969-42478988 None:intergenic 40.0%
GCAATATGTTTGTCGCACAA+CGG + chr5_3:42479115-42479134 Msa0812460:intron 40.0%
ACAATAAAGGGGCAAAACCA+AGG - chr5_3:42479396-42479415 None:intergenic 40.0%
AGTAGCTTGAACTTCAAAGC+AGG + chr5_3:42479464-42479483 Msa0812460:intron 40.0%
TTGAACTTCAAAGCAGGAAC+AGG + chr5_3:42479470-42479489 Msa0812460:intron 40.0%
TACCTTCAGTCCATGTGATT+AGG + chr5_3:42479517-42479536 Msa0812460:intron 40.0%
CTTCATTTCAACGTTCCAAG+AGG + chr5_3:42479676-42479695 Msa0812460:intron 40.0%
! GCAAAGAAACAATAGCCTTG+CGG + chr5_3:42479916-42479935 Msa0812460:intron 40.0%
ATGTCGTCGTTGTTAACAAG+TGG - chr5_3:42479959-42479978 None:intergenic 40.0%
GCTGGTGATTCAAATTGTCA+AGG + chr5_3:42480266-42480285 Msa0812460:CDS 40.0%
ATTTCGCTACACTATTGCAC+CGG - chr5_3:42480489-42480508 None:intergenic 40.0%
TGCACAGCTCTATAGGTAAT+GGG - chr5_3:42480645-42480664 None:intergenic 40.0%
TTGATTTCTCTACAATGCCC+AGG - chr5_3:42480668-42480687 None:intergenic 40.0%
ACTTCTTCAATGCTTCTCAC+AGG + chr5_3:42481207-42481226 Msa0812460:CDS 40.0%
CTTCTTCAATGCTTCTCACA+GGG + chr5_3:42481208-42481227 Msa0812460:CDS 40.0%
TTCTTCAATGCTTCTCACAG+GGG + chr5_3:42481209-42481228 Msa0812460:CDS 40.0%
CAATGCTGTCATGCGTTATA+AGG + chr5_3:42481287-42481306 Msa0812460:CDS 40.0%
!!! GTTACTTTTACGTCAACCAC+AGG - chr5_3:42481387-42481406 None:intergenic 40.0%
! GGTTTTCCAGATGTTGTCTA+AGG + chr5_3:42481599-42481618 Msa0812460:intron 40.0%
TGTTATGGTAAATGGCTGAG+GGG - chr5_3:42481758-42481777 None:intergenic 40.0%
GTGTTATGGTAAATGGCTGA+GGG - chr5_3:42481759-42481778 None:intergenic 40.0%
AGTGTTATGGTAAATGGCTG+AGG - chr5_3:42481760-42481779 None:intergenic 40.0%
ACTACTTGTGGAAATGGTGA+TGG + chr5_3:42481930-42481949 Msa0812460:intron 40.0%
!! GGTGTTTTTGCTCAGAATTC+AGG + chr5_3:42481951-42481970 Msa0812460:intron 40.0%
ATAATGCGATCAGCCAAAGA+GGG + chr5_3:42482046-42482065 Msa0812460:intron 40.0%
!! ATAAGGGTACCATTGGAGAA+AGG - chr5_3:42482209-42482228 None:intergenic 40.0%
! AGAAGTGTGCACATTCCAAA+TGG + chr5_3:42482341-42482360 Msa0812460:intron 40.0%
GAAGTGTGCACATTCCAAAT+GGG + chr5_3:42482342-42482361 Msa0812460:intron 40.0%
CTCAAAGCTTGGTTGCTATA+TGG + chr5_3:42482421-42482440 Msa0812460:intron 40.0%
AGTAAGATATGCTTCTCGGA+AGG + chr5_3:42482489-42482508 Msa0812460:CDS 40.0%
GATGTCAGAAAACGTGTGAA+AGG + chr5_3:42482520-42482539 Msa0812460:CDS 40.0%
!! AGCTTCTGGTTTGACTCAAA+GGG - chr5_3:42482582-42482601 None:intergenic 40.0%
ATGAATTGGCAGTATAGGCT+TGG + chr5_3:42482777-42482796 Msa0812460:three_prime_UTR 40.0%
CACAATTTGGATATCCTTCG+CGG - chr5_3:42482823-42482842 None:intergenic 40.0%
TTCAAGGCACATTGCTTGAA+GGG - chr5_3:42482873-42482892 None:intergenic 40.0%
ATTCAAGGCACATTGCTTGA+AGG - chr5_3:42482874-42482893 None:intergenic 40.0%
TTTGGCCACGATATTGTTCA+CGG + chr5_3:42482962-42482981 Msa0812460:three_prime_UTR 40.0%
TCTGGCAGTTCTACATACAT+AGG - chr5_3:42483024-42483043 None:intergenic 40.0%
TTGTCCTGCATACTTGTAGA+TGG + chr5_3:42483083-42483102 Msa0812460:three_prime_UTR 40.0%
ATCTCCATCTACAAGTATGC+AGG - chr5_3:42483090-42483109 None:intergenic 40.0%
AGGGTCAGTGTTTCTTCTCT+AGG + chr5_3:42477165-42477184 Msa0812460:intron 45.0%
GGGTCAGTGTTTCTTCTCTA+GGG + chr5_3:42477166-42477185 Msa0812460:intron 45.0%
GGGATCATCAGTATGGAAAC+AGG - chr5_3:42478088-42478107 None:intergenic 45.0%
TGGAACTGGGATCATCAGTA+TGG - chr5_3:42478095-42478114 None:intergenic 45.0%
TTAAAGGAGCAAGCGAAGTG+TGG + chr5_3:42478474-42478493 Msa0812460:intron 45.0%
ATAAGGAAGCAGCATCAGAG+CGG - chr5_3:42478557-42478576 None:intergenic 45.0%
CAAGAACACTTGTATGCGAG+AGG + chr5_3:42478631-42478650 Msa0812460:CDS 45.0%
TCAACACACCTCACATATGC+AGG - chr5_3:42478669-42478688 None:intergenic 45.0%
! AACTGTGATTGGTCAGCTCA+TGG + chr5_3:42478711-42478730 Msa0812460:CDS 45.0%
GTGTGTTGAAGAGGATGGAT+TGG - chr5_3:42478739-42478758 None:intergenic 45.0%
CTCTTGTGTGTTGAAGAGGA+TGG - chr5_3:42478744-42478763 None:intergenic 45.0%
CATCCTCTTCAACACACAAG+AGG + chr5_3:42478742-42478761 Msa0812460:CDS 45.0%
TTGCCTCTTGTGTGTTGAAG+AGG - chr5_3:42478748-42478767 None:intergenic 45.0%
GGGCCATATTGAAGAAAGCT+CGG - chr5_3:42478805-42478824 None:intergenic 45.0%
TTCTCAGACATCCCTTCTAC+GGG + chr5_3:42478828-42478847 Msa0812460:CDS 45.0%
AGAAAAGTGACAACAGTGCC+AGG + chr5_3:42478892-42478911 Msa0812460:CDS 45.0%
GAAAAGTGACAACAGTGCCA+GGG + chr5_3:42478893-42478912 Msa0812460:CDS 45.0%
CTGGTTCAAAATACGGGGTT+TGG - chr5_3:42479021-42479040 None:intergenic 45.0%
!! CAAACCCCGTATTTTGAACC+AGG + chr5_3:42479019-42479038 Msa0812460:CDS 45.0%
! ATTCTTTTGGCGGTTTGCCT+TGG + chr5_3:42479376-42479395 Msa0812460:intron 45.0%
! CTCCTAATCACATGGACTGA+AGG - chr5_3:42479522-42479541 None:intergenic 45.0%
TGGCTACTCTCCTAATCACA+TGG - chr5_3:42479530-42479549 None:intergenic 45.0%
CACACGAAAGAGAATCCTCT+TGG - chr5_3:42479694-42479713 None:intergenic 45.0%
GGATTCTCTTTCGTGTGTGA+CGG + chr5_3:42479697-42479716 Msa0812460:intron 45.0%
GATTCTCTTTCGTGTGTGAC+GGG + chr5_3:42479698-42479717 Msa0812460:intron 45.0%
! TGCAGCTTGATGACAGTAGA+TGG + chr5_3:42479878-42479897 Msa0812460:intron 45.0%
TTGCGGCTTACATGCATTGA+CGG + chr5_3:42479933-42479952 Msa0812460:intron 45.0%
GTTACTATGTCCCAGCAGAA+AGG + chr5_3:42480070-42480089 Msa0812460:intron 45.0%
AAAGACATGTCTGCTAGTGC+TGG + chr5_3:42480248-42480267 Msa0812460:CDS 45.0%
TCCTCAGTGTTGTCCAACAT+TGG + chr5_3:42480398-42480417 Msa0812460:intron 45.0%
ACCAATGTTGGACAACACTG+AGG - chr5_3:42480402-42480421 None:intergenic 45.0%
! CTACACTATTGCACCGGTAT+TGG - chr5_3:42480483-42480502 None:intergenic 45.0%
GGCTATAGCACTTAGCATAG+TGG + chr5_3:42480568-42480587 Msa0812460:intron 45.0%
GTGCACAGCTCTATAGGTAA+TGG - chr5_3:42480646-42480665 None:intergenic 45.0%
! TCTTGTTATCTCCCGATCTC+TGG + chr5_3:42480741-42480760 Msa0812460:intron 45.0%
TGCTCACTATCACCAGAGAT+CGG - chr5_3:42480756-42480775 None:intergenic 45.0%
TGAATAGAATTCTCGGGGCA+AGG - chr5_3:42481252-42481271 None:intergenic 45.0%
CATAATGCGATCAGCCAAAG+AGG + chr5_3:42482045-42482064 Msa0812460:intron 45.0%
ATATGCTTCTCGGAAGGCAA+GGG + chr5_3:42482495-42482514 Msa0812460:CDS 45.0%
TCAGAAAACGTGTGAAAGGC+CGG + chr5_3:42482524-42482543 Msa0812460:CDS 45.0%
!! CAGCTTCTGGTTTGACTCAA+AGG - chr5_3:42482583-42482602 None:intergenic 45.0%
AGTGTAAACTCAGCAGCTTC+TGG - chr5_3:42482596-42482615 None:intergenic 45.0%
CAAACCGTCTGATTTAACGC+AGG + chr5_3:42482704-42482723 Msa0812460:three_prime_UTR 45.0%
ATTGGCAGTATAGGCTTGGA+AGG + chr5_3:42482781-42482800 Msa0812460:three_prime_UTR 45.0%
TTGGCAGTATAGGCTTGGAA+GGG + chr5_3:42482782-42482801 Msa0812460:three_prime_UTR 45.0%
TCAAGGCACATTGCTTGAAG+GGG - chr5_3:42482872-42482891 None:intergenic 45.0%
GTGAACAATATCGTGGCCAA+AGG - chr5_3:42482963-42482982 None:intergenic 45.0%
GCAAACCGTGAACAATATCG+TGG - chr5_3:42482970-42482989 None:intergenic 45.0%
GTATGTAGAACTGCCAGAGA+TGG + chr5_3:42483026-42483045 Msa0812460:three_prime_UTR 45.0%
GACACTTATCATGCCATCTC+TGG - chr5_3:42483042-42483061 None:intergenic 45.0%
!! AGATATGGGAGGGTTGGTGT+AGG - chr5_3:42477067-42477086 None:intergenic 50.0%
TTGCTTCTCTGGCTGTCCTT+CGG + chr5_3:42478776-42478795 Msa0812460:CDS 50.0%
CACATGCTTCACCCGTAGAA+GGG - chr5_3:42478842-42478861 None:intergenic 50.0%
TCACATGCTTCACCCGTAGA+AGG - chr5_3:42478843-42478862 None:intergenic 50.0%
GACACACTCTTGCTTTCTGG+AGG - chr5_3:42478921-42478940 None:intergenic 50.0%
CCAGACACACTCTTGCTTTC+TGG - chr5_3:42478924-42478943 None:intergenic 50.0%
! CCAGAAAGCAAGAGTGTGTC+TGG + chr5_3:42478921-42478940 Msa0812460:CDS 50.0%
! TGTGTCTGGTTCAGCTCAAG+TGG + chr5_3:42478935-42478954 Msa0812460:CDS 50.0%
GTCAATGCATGTAAGCCGCA+AGG - chr5_3:42479934-42479953 None:intergenic 50.0%
TACCTATAGAGCTGTGCACC+TGG + chr5_3:42480647-42480666 Msa0812460:intron 50.0%
ACCTATAGAGCTGTGCACCT+GGG + chr5_3:42480648-42480667 Msa0812460:intron 50.0%
GCTCACTATCACCAGAGATC+GGG - chr5_3:42480755-42480774 None:intergenic 50.0%
CAGCATTGCTGCATTCTGGT+TGG - chr5_3:42481062-42481081 None:intergenic 50.0%
GATGCAGCATTGCTGCATTC+TGG - chr5_3:42481066-42481085 None:intergenic 50.0%
GCTGGTGACTATCAAGAGTG+TGG + chr5_3:42481183-42481202 Msa0812460:CDS 50.0%
ATAGAATTCTCGGGGCAAGG+AGG - chr5_3:42481249-42481268 None:intergenic 50.0%
GATATGCTTCTCGGAAGGCA+AGG + chr5_3:42482494-42482513 Msa0812460:CDS 50.0%
! TTTCCCCAGCTTTGACGAAC+CGG - chr5_3:42482546-42482565 None:intergenic 50.0%
GGCTCCTGCGTTAAATCAGA+CGG - chr5_3:42482711-42482730 None:intergenic 50.0%
TTGGATATCCTTCGCGGTGA+AGG - chr5_3:42482817-42482836 None:intergenic 50.0%
! GCGATTTTTGCGGAGACCAG+AGG + chr5_3:42478517-42478536 Msa0812460:CDS 55.0%
TTGCGGAGACCAGAGGTCTT+TGG + chr5_3:42478524-42478543 Msa0812460:CDS 55.0%
GGCAGTACACCAAAGACCTC+TGG - chr5_3:42478536-42478555 None:intergenic 55.0%
GAAGAAAGCTCGGAAGCCGA+AGG - chr5_3:42478795-42478814 None:intergenic 55.0%
! CTTGCTTTCTGGAGGAACCC+TGG - chr5_3:42478913-42478932 None:intergenic 55.0%
ACGGGGTTTGGCACTTGACT+CGG - chr5_3:42479009-42479028 None:intergenic 55.0%
GGCGCCTGGTTCAAAATACG+GGG - chr5_3:42479026-42479045 None:intergenic 55.0%
GGGCGCCTGGTTCAAAATAC+GGG - chr5_3:42479027-42479046 None:intergenic 55.0%
CGGGCGCCTGGTTCAAAATA+CGG - chr5_3:42479028-42479047 None:intergenic 55.0%
!! CGTATTTTGAACCAGGCGCC+CGG + chr5_3:42479026-42479045 Msa0812460:CDS 55.0%
AGTGCAGGAGCCTTTCTGCT+GGG - chr5_3:42480083-42480102 None:intergenic 55.0%
TAGTGCAGGAGCCTTTCTGC+TGG - chr5_3:42480084-42480103 None:intergenic 55.0%
!! AAAGGCCGGTTCGTCAAAGC+TGG + chr5_3:42482538-42482557 Msa0812460:CDS 55.0%
!! AAGGCCGGTTCGTCAAAGCT+GGG + chr5_3:42482539-42482558 Msa0812460:CDS 55.0%
CGGGGTTTGGCACTTGACTC+GGG - chr5_3:42479008-42479027 None:intergenic 60.0%
!! TCAAGGCGCTGTTGCTGCTG+AGG + chr5_3:42480283-42480302 Msa0812460:CDS 60.0%
GCCCAGGTGCACAGCTCTAT+AGG - chr5_3:42480652-42480671 None:intergenic 60.0%
!! AGGCCGGTTCGTCAAAGCTG+GGG + chr5_3:42482540-42482559 Msa0812460:CDS 60.0%
CATTGGAAGATCCGGGCGCC+TGG - chr5_3:42479040-42479059 None:intergenic 65.0%
TTCTCACAGGGGAGCCTCCC+TGG + chr5_3:42481220-42481239 Msa0812460:CDS 65.0%
TCGGGGCAAGGAGGACACCA+GGG - chr5_3:42481240-42481259 None:intergenic 65.0%
ACGCGCATCCTTCACCGCGA+AGG + chr5_3:42482806-42482825 Msa0812460:three_prime_UTR 65.0%
GGGCAAGGAGGACACCAGGG+AGG - chr5_3:42481237-42481256 None:intergenic 70.0%
CTCGGGGCAAGGAGGACACC+AGG - chr5_3:42481241-42481260 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 42477027 42483303 42477027 ID=Msa0812460;Name=Msa0812460
chr5_3 mRNA 42477027 42483303 42477027 ID=Msa0812460-mRNA-1;Parent=Msa0812460;Name=Msa0812460-mRNA-1;_AED=0.13;_eAED=0.13;_QI=214|1|1|1|0.6|0.5|6|697|410
chr5_3 exon 42477027 42477167 42477027 ID=Msa0812460-mRNA-1:exon:13032;Parent=Msa0812460-mRNA-1
chr5_3 exon 42477432 42477480 42477432 ID=Msa0812460-mRNA-1:exon:13033;Parent=Msa0812460-mRNA-1
chr5_3 exon 42478480 42479073 42478480 ID=Msa0812460-mRNA-1:exon:13034;Parent=Msa0812460-mRNA-1
chr5_3 exon 42480071 42480304 42480071 ID=Msa0812460-mRNA-1:exon:13035;Parent=Msa0812460-mRNA-1
chr5_3 exon 42481030 42481328 42481030 ID=Msa0812460-mRNA-1:exon:13036;Parent=Msa0812460-mRNA-1
chr5_3 exon 42482477 42483303 42482477 ID=Msa0812460-mRNA-1:exon:13037;Parent=Msa0812460-mRNA-1
chr5_3 five_prime_UTR 42477027 42477167 42477027 ID=Msa0812460-mRNA-1:five_prime_utr;Parent=Msa0812460-mRNA-1
chr5_3 five_prime_UTR 42477432 42477480 42477432 ID=Msa0812460-mRNA-1:five_prime_utr;Parent=Msa0812460-mRNA-1
chr5_3 five_prime_UTR 42478480 42478503 42478480 ID=Msa0812460-mRNA-1:five_prime_utr;Parent=Msa0812460-mRNA-1
chr5_3 CDS 42478504 42479073 42478504 ID=Msa0812460-mRNA-1:cds;Parent=Msa0812460-mRNA-1
chr5_3 CDS 42480071 42480304 42480071 ID=Msa0812460-mRNA-1:cds;Parent=Msa0812460-mRNA-1
chr5_3 CDS 42481030 42481328 42481030 ID=Msa0812460-mRNA-1:cds;Parent=Msa0812460-mRNA-1
chr5_3 CDS 42482477 42482606 42482477 ID=Msa0812460-mRNA-1:cds;Parent=Msa0812460-mRNA-1
chr5_3 three_prime_UTR 42482607 42483303 42482607 ID=Msa0812460-mRNA-1:three_prime_utr;Parent=Msa0812460-mRNA-1
Gene Sequence

>Msa0812460

ATGGGTTCTTTATGCGATTTTTGCGGAGACCAGAGGTCTTTGGTGTACTGCCGCTCTGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAACGAACTTTCTAAGCGTCATTCAAGAACACTTGTATGCGAGAGGTGTAATTTACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTCAGCTCATGGTACCAATCCATCCTCTTCAACACACAAGAGGCAATCAATCAATTGCTTCTCTGGCTGTCCTTCGGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCCCTTCTACGGGTGAAGCATGTGAACATAAACTCGGTTTGATGAGCATTAACGAGAAAAGTGACAACAGTGCCAGGGTTCCTCCAGAAAGCAAGAGTGTGTCTGGTTCAGCTCAAGTGGCCGATCTTCCAAGCAAAAACAAATCTGGCGTCGACACATCTTCAATACCCGAGTCAAGTGCCAAACCCCGTATTTTGAACCAGGCGCCCGGATCTTCCAATGAACTTATGCCTAAGTTACTATGTCCCAGCAGAAAGGCTCCTGCACTATGTGAAGATGATAAGTTGCTTGGTGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATACGGAACTTTTTGACTTTGCTCTCAACCACTCTGAAGAGTTTTTTGAAAATGGTGGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGCGCTGTTGCTGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTATTTATTTTACGGAAAGGCAATCAAACCTTTCATTTTCTGGCGTTAACAAAGATACTAGTGCTGGTGACTATCAAGAGTGTGGTACTTCTTCAATGCTTCTCACAGGGGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAATTCTATTCAATCTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCAAGGGCTGATGTCAGAAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATACGATTACGACCCTTTGAGTCAAACCAGAAGCTGCTGA
Protein sequence

>Msa0812460

MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNLQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSDIPSTGEACEHKLGLMSINEKSDNSARVPPESKSVSGSAQVADLPSKNKSGVDTSSIPESSAKPRILNQAPGSSNELMPKLLCPSRKAPALCEDDKLLGDFNIDEMDFELENYTELFDFALNHSEEFFENGGIDSLFERKDMSASAGDSNCQGAVAAEGSSARFVSAIQPECSNAASADSILSTKTEPVIYFTERQSNLSFSGVNKDTSAGDYQECGTSSMLLTGEPPWCPPCPENSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETYDYDPLSQTRSC*