Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812600 | XP_003615578.1 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812600 | sp|Q8S9H7|DIV_ANTMA | 59.062 | 320 | 101 | 11 | 5 | 307 | 1 | 307 | 1.38e-115 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812600 | G7K698 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0812600 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812600 | MtrunA17_Chr5g0429521 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 634 |
| Msa0812600 | MtrunA17_Chr3g0104071 | 66.565 | 329 | 81 | 8 | 1 | 307 | 1 | 322 | 3.74e-150 | 424 |
| Msa0812600 | MtrunA17_Chr7g0241761 | 58.974 | 312 | 113 | 8 | 1 | 303 | 7 | 312 | 1.25e-117 | 341 |
| Msa0812600 | MtrunA17_Chr5g0436501 | 62.871 | 202 | 68 | 3 | 4 | 203 | 2 | 198 | 1.97e-86 | 260 |
| Msa0812600 | MtrunA17_Chr1g0162081 | 47.867 | 211 | 80 | 4 | 26 | 224 | 9 | 201 | 4.77e-58 | 188 |
| Msa0812600 | MtrunA17_Chr1g0210471 | 50.282 | 177 | 79 | 2 | 27 | 200 | 22 | 192 | 1.52e-56 | 182 |
| Msa0812600 | MtrunA17_Chr4g0062741 | 48.039 | 204 | 69 | 4 | 29 | 200 | 8 | 206 | 4.04e-54 | 178 |
| Msa0812600 | MtrunA17_Chr8g0365011 | 36.073 | 219 | 103 | 6 | 23 | 223 | 2 | 201 | 1.69e-38 | 137 |
| Msa0812600 | MtrunA17_Chr4g0055931 | 48.993 | 149 | 52 | 4 | 90 | 235 | 57 | 184 | 1.19e-32 | 123 |
| Msa0812600 | MtrunA17_Chr6g0488471 | 53.509 | 114 | 48 | 1 | 126 | 239 | 91 | 199 | 2.80e-32 | 121 |
| Msa0812600 | MtrunA17_Chr2g0331031 | 73.239 | 71 | 19 | 0 | 127 | 197 | 104 | 174 | 9.85e-32 | 121 |
| Msa0812600 | MtrunA17_Chr8g0389241 | 66.250 | 80 | 26 | 1 | 118 | 197 | 91 | 169 | 2.11e-30 | 115 |
| Msa0812600 | MtrunA17_Chr5g0415191 | 70.513 | 78 | 23 | 0 | 126 | 203 | 96 | 173 | 1.04e-28 | 112 |
| Msa0812600 | MtrunA17_Chr4g0059701 | 66.667 | 81 | 27 | 0 | 122 | 202 | 74 | 154 | 6.14e-27 | 107 |
| Msa0812600 | MtrunA17_Chr3g0135671 | 47.967 | 123 | 50 | 4 | 129 | 240 | 88 | 207 | 1.52e-25 | 102 |
| Msa0812600 | MtrunA17_Chr5g0440731 | 53.846 | 91 | 38 | 2 | 124 | 211 | 97 | 186 | 1.01e-24 | 100 |
| Msa0812600 | MtrunA17_Chr3g0092621 | 64.179 | 67 | 24 | 0 | 132 | 198 | 84 | 150 | 3.24e-24 | 96.7 |
| Msa0812600 | MtrunA17_Chr5g0440741 | 45.385 | 130 | 61 | 5 | 90 | 211 | 54 | 181 | 3.64e-24 | 99.4 |
| Msa0812600 | MtrunA17_Chr8g0364741 | 37.500 | 128 | 69 | 3 | 26 | 149 | 7 | 127 | 2.61e-23 | 92.8 |
| Msa0812600 | MtrunA17_Chr5g0409841 | 55.814 | 86 | 35 | 2 | 128 | 211 | 88 | 172 | 9.60e-23 | 94.4 |
| Msa0812600 | MtrunA17_Chr5g0432921 | 35.882 | 170 | 89 | 7 | 23 | 188 | 15 | 168 | 3.05e-22 | 92.8 |
| Msa0812600 | MtrunA17_Chr5g0432941 | 35.088 | 171 | 88 | 6 | 23 | 188 | 16 | 168 | 1.79e-21 | 90.9 |
| Msa0812600 | MtrunA17_Chr5g0409831 | 60.526 | 76 | 27 | 1 | 128 | 200 | 73 | 148 | 2.63e-20 | 87.8 |
| Msa0812600 | MtrunA17_Chr6g0452791 | 66.129 | 62 | 20 | 1 | 132 | 192 | 80 | 141 | 2.95e-20 | 86.3 |
| Msa0812600 | MtrunA17_Chr1g0155181 | 49.315 | 73 | 37 | 0 | 24 | 96 | 2 | 74 | 7.13e-20 | 82.4 |
| Msa0812600 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 29 | 93 | 16 | 80 | 5.40e-19 | 80.1 |
| Msa0812600 | MtrunA17_Chr8g0373131 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.41e-19 | 79.7 |
| Msa0812600 | MtrunA17_Chr8g0373111 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.72e-19 | 79.7 |
| Msa0812600 | MtrunA17_Chr8g0373121 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.72e-19 | 79.7 |
| Msa0812600 | MtrunA17_Chr8g0364731 | 52.381 | 84 | 35 | 2 | 141 | 219 | 10 | 93 | 8.94e-19 | 82.4 |
| Msa0812600 | MtrunA17_Chr3g0141601 | 54.545 | 66 | 30 | 0 | 26 | 91 | 4 | 69 | 1.10e-18 | 79.3 |
| Msa0812600 | MtrunA17_Chr5g0404101 | 46.875 | 64 | 34 | 0 | 28 | 91 | 18 | 81 | 1.23e-18 | 79.3 |
| Msa0812600 | MtrunA17_Chr6g0449111 | 47.297 | 74 | 39 | 0 | 24 | 97 | 5 | 78 | 7.36e-18 | 76.6 |
| Msa0812600 | MtrunA17_Chr3g0081631 | 45.455 | 88 | 36 | 2 | 24 | 110 | 5 | 81 | 4.06e-16 | 72.4 |
| Msa0812600 | MtrunA17_Chr8g0373101 | 49.231 | 65 | 32 | 1 | 25 | 89 | 1 | 64 | 7.34e-16 | 71.2 |
| Msa0812600 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 29 | 89 | 4 | 63 | 4.17e-15 | 68.9 |
| Msa0812600 | MtrunA17_Chr3g0113121 | 37.984 | 129 | 67 | 2 | 80 | 201 | 49 | 171 | 9.79e-15 | 72.0 |
| Msa0812600 | MtrunA17_Chr7g0255841 | 53.333 | 60 | 28 | 0 | 32 | 91 | 15 | 74 | 1.87e-14 | 67.8 |
| Msa0812600 | MtrunA17_Chr1g0192061 | 52.055 | 73 | 30 | 2 | 134 | 202 | 63 | 134 | 2.11e-13 | 67.4 |
| Msa0812600 | MtrunA17_Chr3g0141641 | 44.444 | 63 | 35 | 0 | 29 | 91 | 3 | 65 | 2.16e-12 | 62.4 |
| Msa0812600 | MtrunA17_Chr8g0370121 | 43.056 | 72 | 36 | 2 | 129 | 196 | 97 | 167 | 1.63e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812600 | AT2G38090.1 | 65.865 | 208 | 58 | 2 | 5 | 201 | 5 | 210 | 9.81e-99 | 293 |
| Msa0812600 | AT5G58900.1 | 58.214 | 280 | 84 | 8 | 5 | 267 | 1 | 264 | 5.57e-97 | 288 |
| Msa0812600 | AT5G01200.1 | 61.500 | 200 | 62 | 5 | 16 | 201 | 17 | 215 | 2.07e-78 | 240 |
| Msa0812600 | AT5G05790.2 | 61.275 | 204 | 68 | 5 | 5 | 201 | 1 | 200 | 6.29e-78 | 239 |
| Msa0812600 | AT5G05790.1 | 61.275 | 204 | 68 | 5 | 5 | 201 | 1 | 200 | 6.29e-78 | 239 |
| Msa0812600 | AT3G11280.2 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 6.71e-78 | 238 |
| Msa0812600 | AT3G11280.1 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 6.71e-78 | 238 |
| Msa0812600 | AT1G49010.1 | 51.232 | 203 | 72 | 5 | 23 | 200 | 2 | 202 | 8.43e-55 | 181 |
| Msa0812600 | AT5G08520.1 | 50.273 | 183 | 86 | 3 | 22 | 200 | 5 | 186 | 3.37e-54 | 179 |
| Msa0812600 | AT5G04760.1 | 41.892 | 222 | 116 | 3 | 26 | 244 | 3 | 214 | 2.38e-50 | 166 |
| Msa0812600 | AT5G23650.1 | 38.565 | 223 | 108 | 4 | 18 | 222 | 2 | 213 | 3.92e-42 | 148 |
| Msa0812600 | AT5G47390.1 | 60.185 | 108 | 35 | 3 | 92 | 197 | 60 | 161 | 9.29e-32 | 122 |
| Msa0812600 | AT3G10580.2 | 41.573 | 178 | 80 | 7 | 23 | 197 | 2 | 158 | 9.64e-32 | 119 |
| Msa0812600 | AT3G10580.1 | 41.573 | 178 | 80 | 7 | 23 | 197 | 2 | 158 | 1.48e-31 | 119 |
| Msa0812600 | AT4G09450.1 | 36.744 | 215 | 110 | 5 | 28 | 242 | 6 | 194 | 2.31e-31 | 116 |
| Msa0812600 | AT5G61620.1 | 48.148 | 135 | 63 | 4 | 127 | 260 | 103 | 231 | 1.67e-28 | 112 |
| Msa0812600 | AT5G56840.1 | 50.000 | 104 | 51 | 1 | 98 | 200 | 57 | 160 | 3.33e-27 | 106 |
| Msa0812600 | AT1G70000.1 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.15e-26 | 105 |
| Msa0812600 | AT1G70000.2 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.15e-26 | 105 |
| Msa0812600 | AT3G16350.1 | 58.763 | 97 | 40 | 0 | 127 | 223 | 132 | 228 | 7.37e-26 | 106 |
| Msa0812600 | AT1G74840.2 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 5.69e-25 | 100 |
| Msa0812600 | AT1G74840.1 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 8.90e-25 | 100 |
| Msa0812600 | AT1G19000.2 | 65.789 | 76 | 26 | 0 | 128 | 203 | 98 | 173 | 2.54e-24 | 100 |
| Msa0812600 | AT1G19000.1 | 65.789 | 76 | 26 | 0 | 128 | 203 | 98 | 173 | 2.54e-24 | 100 |
| Msa0812600 | AT1G75250.1 | 55.714 | 70 | 31 | 0 | 24 | 93 | 7 | 76 | 1.85e-21 | 88.2 |
| Msa0812600 | AT1G75250.2 | 55.714 | 70 | 31 | 0 | 24 | 93 | 7 | 76 | 1.91e-21 | 87.4 |
| Msa0812600 | AT3G10590.1 | 35.912 | 181 | 98 | 6 | 26 | 197 | 4 | 175 | 6.15e-21 | 89.4 |
| Msa0812600 | AT2G21650.1 | 52.941 | 68 | 32 | 0 | 29 | 96 | 14 | 81 | 9.09e-18 | 77.8 |
| Msa0812600 | AT4G39250.1 | 49.231 | 65 | 33 | 0 | 29 | 93 | 14 | 78 | 1.55e-16 | 74.3 |
| Msa0812600 | AT1G19510.1 | 51.613 | 62 | 30 | 0 | 32 | 93 | 15 | 76 | 2.38e-15 | 70.9 |
| Msa0812600 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 33 | 91 | 15 | 73 | 4.70e-13 | 63.9 |
| Msa0812600 | AT4G36570.1 | 56.818 | 44 | 19 | 0 | 29 | 72 | 12 | 55 | 9.86e-12 | 59.7 |
Find 95 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAAGACGTGTTAAAATTT+TGG | 0.152509 | 5_3:+42757631 | Msa0812600:three_prime_UTR |
| CTTGAAAACTTAGCCCAATT+TGG | 0.159886 | 5_3:-42755393 | None:intergenic |
| ATAATAATCATCTTTAAATT+TGG | 0.163261 | 5_3:+42755599 | Msa0812600:five_prime_UTR |
| TTCTCAACTGCTTTCCAAAT+TGG | 0.186049 | 5_3:+42755379 | Msa0812600:five_prime_UTR |
| AATCAACACTATGGACTTAT+TGG | 0.204334 | 5_3:-42757740 | None:intergenic |
| ATTATTATCTCTTATCTAAT+TGG | 0.232043 | 5_3:-42755584 | None:intergenic |
| CAGAGAGAGTCAATAATTTA+TGG | 0.248015 | 5_3:-42755303 | None:intergenic |
| TTCTTGGCATATCAACTTAC+AGG | 0.273992 | 5_3:+42757658 | Msa0812600:three_prime_UTR |
| TATTTCATAAGACAGCTTTC+AGG | 0.304151 | 5_3:+42757000 | Msa0812600:CDS |
| CACCTTTGCCATACTTCTTT+AGG | 0.307378 | 5_3:-42756906 | None:intergenic |
| TTAGATTGGGTGAACAGTTC+TGG | 0.315891 | 5_3:+42756205 | Msa0812600:CDS |
| TTCACCCAATCTAAGGTAAA+AGG | 0.324294 | 5_3:-42756196 | None:intergenic |
| GAAAACTCTAAAATTTGAAT+AGG | 0.330408 | 5_3:-42755833 | None:intergenic |
| CCTTTCTTCCTTTCTTGCTC+AGG | 0.337591 | 5_3:-42756277 | None:intergenic |
| TCTCAACTGCTTTCCAAATT+GGG | 0.350224 | 5_3:+42755380 | Msa0812600:five_prime_UTR |
| CTACTAGGCCTAAAGAAGTA+TGG | 0.375050 | 5_3:+42756898 | Msa0812600:CDS |
| AAGTTTGTTGTTGCTGCTGC+TGG | 0.378047 | 5_3:-42757155 | None:intergenic |
| AGAGAGAGTCAATAATTTAT+GGG | 0.379120 | 5_3:-42755302 | None:intergenic |
| GCTGGGTTGATTCCAGTTCC+TGG | 0.382171 | 5_3:+42756154 | Msa0812600:CDS |
| TTGAGGGGAGCGTGCGTTGA+TGG | 0.386009 | 5_3:+42757486 | Msa0812600:three_prime_UTR |
| ACATCACCGACCGTCTTTCC+TGG | 0.388704 | 5_3:-42756085 | None:intergenic |
| AGAACTGTTCACCCAATCTA+AGG | 0.390954 | 5_3:-42756203 | None:intergenic |
| GATGTTTGTAATATAGAAGC+TGG | 0.393501 | 5_3:+42756136 | Msa0812600:CDS |
| AACATTATTCACATGCATAA+AGG | 0.404368 | 5_3:+42757376 | Msa0812600:CDS |
| TGATAAGATGAAGTGGGAAA+TGG | 0.405855 | 5_3:+42755901 | Msa0812600:exon |
| GTTGTGATGAATGTTGCATT+TGG | 0.410990 | 5_3:-42757356 | None:intergenic |
| TGATGTGATGAGACAATATA+AGG | 0.419767 | 5_3:+42756102 | Msa0812600:CDS |
| AGAAGTATGGCAAAGGTGAT+TGG | 0.420618 | 5_3:+42756911 | Msa0812600:CDS |
| AAAACTCTAAAATTTGAATA+GGG | 0.421518 | 5_3:-42755832 | None:intergenic |
| TGGTGAAGTGGATCTATTAT+TGG | 0.427162 | 5_3:-42757109 | None:intergenic |
| CAAGACCAAAATCTTCAAAA+AGG | 0.427744 | 5_3:+42757294 | Msa0812600:CDS |
| AAGCAGTTGAGAAGGAAGAA+AGG | 0.430795 | 5_3:-42755369 | None:intergenic |
| AGCAGTTGAGAAGGAAGAAA+GGG | 0.432424 | 5_3:-42755368 | None:intergenic |
| ATGAAAACTTGTTCATGAGT+TGG | 0.437532 | 5_3:-42757234 | None:intergenic |
| ATTTCTAGTGAAGTTTATCA+TGG | 0.438525 | 5_3:+42757794 | Msa0812600:three_prime_UTR |
| GCTATCTTCCATACACCAAT+TGG | 0.448071 | 5_3:-42755957 | None:intergenic |
| CTTATGTTCTGGTGGATTGA+GGG | 0.453667 | 5_3:+42757470 | Msa0812600:three_prime_UTR |
| TTGTGTTCTTCTTCAGTCCA+TGG | 0.457416 | 5_3:-42756304 | None:intergenic |
| TTAGAGCTCCTGAGCAAGAA+AGG | 0.457547 | 5_3:+42756269 | Msa0812600:CDS |
| CATACACACAAAACTCCAAT+TGG | 0.463612 | 5_3:+42755942 | Msa0812600:CDS |
| TATGATGAATTCAGAGGAAG+TGG | 0.470044 | 5_3:+42756229 | Msa0812600:CDS |
| TCTTATGTTCTGGTGGATTG+AGG | 0.471104 | 5_3:+42757469 | Msa0812600:three_prime_UTR |
| GCATGGCTTGCTACTTGAGT+TGG | 0.471843 | 5_3:-42756970 | None:intergenic |
| GGAGTGTTATAACCAGGAAC+TGG | 0.478409 | 5_3:-42756166 | None:intergenic |
| ACAAAACTCCAATTGGTGTA+TGG | 0.484625 | 5_3:+42755949 | Msa0812600:CDS |
| TATGTGAATATCTTATGTTC+TGG | 0.491831 | 5_3:+42757459 | Msa0812600:three_prime_UTR |
| TCCTGCAGATTATTTCTACT+AGG | 0.501666 | 5_3:+42756883 | Msa0812600:intron |
| CCTGAGCAAGAAAGGAAGAA+AGG | 0.504246 | 5_3:+42756277 | Msa0812600:CDS |
| AGAGGAAGATAAAGCAGAGA+AGG | 0.513934 | 5_3:-42755775 | None:intergenic |
| TAAGATATTCACATATACCT+TGG | 0.516725 | 5_3:-42757451 | None:intergenic |
| TCTAAGGTAAAAGGTGAAGT+AGG | 0.517348 | 5_3:-42756187 | None:intergenic |
| AAGATATTCACATATACCTT+GGG | 0.517678 | 5_3:-42757450 | None:intergenic |
| AATGATTGAGGTGGGTGAGA+AGG | 0.527301 | 5_3:+42757560 | Msa0812600:three_prime_UTR |
| GAAAACTTGATAAGATGAAG+TGG | 0.527680 | 5_3:+42755894 | Msa0812600:exon |
| TCTTATATCATTGTCAATCA+AGG | 0.528102 | 5_3:-42757598 | None:intergenic |
| TGAGAAGGAAGAAAGGGATA+AGG | 0.530800 | 5_3:-42755362 | None:intergenic |
| CTGCTGGTGTGAAAGTAACA+TGG | 0.532432 | 5_3:-42757139 | None:intergenic |
| GCTACTTTATGCCATCGATC+CGG | 0.541949 | 5_3:-42756052 | None:intergenic |
| TAACAAATAAAACTTTAAAG+AGG | 0.542250 | 5_3:+42757703 | Msa0812600:three_prime_UTR |
| TTATGTTCTGGTGGATTGAG+GGG | 0.544191 | 5_3:+42757471 | Msa0812600:three_prime_UTR |
| ATAAAGATACGCCGGATCGA+TGG | 0.544701 | 5_3:+42756041 | Msa0812600:CDS |
| GTGAATATCTTATGTTCTGG+TGG | 0.545144 | 5_3:+42757462 | Msa0812600:three_prime_UTR |
| GAATAATCAACAAAATGCTA+TGG | 0.547089 | 5_3:+42757203 | Msa0812600:CDS |
| ATTTGGAAAACCATGTTATG+TGG | 0.549103 | 5_3:-42757339 | None:intergenic |
| CATGGGATTCTGTGGTGAAG+TGG | 0.560049 | 5_3:-42757121 | None:intergenic |
| TCAAGTCAGTATAATGATTG+AGG | 0.560467 | 5_3:+42757548 | Msa0812600:three_prime_UTR |
| AGTCAGTATAATGATTGAGG+TGG | 0.575295 | 5_3:+42757551 | Msa0812600:three_prime_UTR |
| CTATGGACTTATTGGCATTG+CGG | 0.579525 | 5_3:-42757732 | None:intergenic |
| TTCATAAGACAGCTTTCAGG+AGG | 0.585837 | 5_3:+42757003 | Msa0812600:CDS |
| CTCTTCTGGAGTCCATTGTG+TGG | 0.588727 | 5_3:-42755984 | None:intergenic |
| AATTTGGAAAGCAGTTGAGA+AGG | 0.592793 | 5_3:-42755377 | None:intergenic |
| AAAGTAGCTGAAATGATACC+AGG | 0.595280 | 5_3:+42756067 | Msa0812600:CDS |
| GTCTTCTTATCCACATAACA+TGG | 0.600765 | 5_3:+42757329 | Msa0812600:CDS |
| AAAGGAAGAAAGGAGTGCCA+TGG | 0.602101 | 5_3:+42756287 | Msa0812600:CDS |
| ATGTTTGTAATATAGAAGCT+GGG | 0.604659 | 5_3:+42756137 | Msa0812600:CDS |
| GTCAGTATAATGATTGAGGT+GGG | 0.605498 | 5_3:+42757552 | Msa0812600:three_prime_UTR |
| GAGAGAGTCAATAATTTATG+GGG | 0.607408 | 5_3:-42755301 | None:intergenic |
| AAAACTTGATAAGATGAAGT+GGG | 0.612600 | 5_3:+42755895 | Msa0812600:exon |
| GGCCTAAAGAAGTATGGCAA+AGG | 0.616426 | 5_3:+42756904 | Msa0812600:CDS |
| TGAAATGATACCAGGAAAGA+CGG | 0.622184 | 5_3:+42756075 | Msa0812600:CDS |
| TCTGGTTATGATGAATTCAG+AGG | 0.623212 | 5_3:+42756223 | Msa0812600:CDS |
| TGGCATATCAACTTACAGGA+AGG | 0.632783 | 5_3:+42757662 | Msa0812600:three_prime_UTR |
| ATGATACCAGGAAAGACGGT+CGG | 0.635685 | 5_3:+42756079 | Msa0812600:CDS |
| GAAGTAGGAGTGTTATAACC+AGG | 0.644855 | 5_3:-42756172 | None:intergenic |
| TGCTGGTGTGAAAGTAACAT+GGG | 0.648997 | 5_3:-42757138 | None:intergenic |
| TTTCAGGAGGAAAAGACAAG+AGG | 0.650765 | 5_3:+42757016 | Msa0812600:CDS |
| AACAAAACAGAGGAAAACAG+AGG | 0.650998 | 5_3:-42755793 | None:intergenic |
| AAATTTGAATAGGGAAACAG+AGG | 0.653082 | 5_3:-42755823 | None:intergenic |
| TTGAGTGTTAAAGTGCATGC+AGG | 0.655521 | 5_3:-42757529 | None:intergenic |
| AGGAAAACAGAACAAAACAG+AGG | 0.657890 | 5_3:-42755803 | None:intergenic |
| TTTGTGTGTATGATGCAGGA+GGG | 0.665325 | 5_3:-42755931 | None:intergenic |
| AGTTCATGATAAAGATACGC+CGG | 0.676724 | 5_3:+42756033 | Msa0812600:CDS |
| AAGATAGCATGACCACACAA+TGG | 0.678472 | 5_3:+42755972 | Msa0812600:CDS |
| GAAAGTAACATGGGATTCTG+TGG | 0.681888 | 5_3:-42757129 | None:intergenic |
| TCATAGGAGTTAAAACCATG+AGG | 0.695559 | 5_3:-42757261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAGCAATTTATTTTT+TGG | + | chr5_3:42755487-42755506 | Msa0812600:five_prime_UTR | 10.0% |
| !!! | TTATAAGCAATTTATTTTTT+GGG | + | chr5_3:42755488-42755507 | Msa0812600:five_prime_UTR | 10.0% |
| !! | ATAATAATCATCTTTAAATT+TGG | + | chr5_3:42755599-42755618 | Msa0812600:five_prime_UTR | 10.0% |
| !!! | ATTTTTTTTAGTGAGAAAAT+AGG | - | chr5_3:42755441-42755460 | None:intergenic | 15.0% |
| !!! | AATTGATTTTAGATCTTAAA+AGG | + | chr5_3:42755538-42755557 | Msa0812600:five_prime_UTR | 15.0% |
| !!! | ATTGATTTTAGATCTTAAAA+GGG | + | chr5_3:42755539-42755558 | Msa0812600:five_prime_UTR | 15.0% |
| !! | ATTATTATCTCTTATCTAAT+TGG | - | chr5_3:42755587-42755606 | None:intergenic | 15.0% |
| !!! | AAAACTCTAAAATTTGAATA+GGG | - | chr5_3:42755835-42755854 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTTCCTTTATTA+GGG | + | chr5_3:42756414-42756433 | Msa0812600:intron | 15.0% |
| !!! | TTAAAATTTTGGTTAATTCT+TGG | + | chr5_3:42757642-42757661 | Msa0812600:three_prime_UTR | 15.0% |
| !!! | TAACAAATAAAACTTTAAAG+AGG | + | chr5_3:42757703-42757722 | Msa0812600:three_prime_UTR | 15.0% |
| !!! | GAAAACTCTAAAATTTGAAT+AGG | - | chr5_3:42755836-42755855 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTCATTGAATTTT+TGG | + | chr5_3:42755846-42755865 | Msa0812600:five_prime_UTR | 20.0% |
| !!! | AGAGTTTTCATTGAATTTTT+GGG | + | chr5_3:42755847-42755866 | Msa0812600:five_prime_UTR | 20.0% |
| !! | TAACAAAAAACAAATACAGA+AGG | - | chr5_3:42756342-42756361 | None:intergenic | 20.0% |
| !!! | GTTAGTATTTTTCCTTTATT+AGG | + | chr5_3:42756413-42756432 | Msa0812600:intron | 20.0% |
| !! | TAGAATTTAAACCCTAATAA+AGG | - | chr5_3:42756428-42756447 | None:intergenic | 20.0% |
| !! | TATAAATATATTTAGAGGGT+TGG | + | chr5_3:42756608-42756627 | Msa0812600:intron | 20.0% |
| !! | ATATCATCTTAAGTTAGAAT+AGG | + | chr5_3:42756773-42756792 | Msa0812600:intron | 20.0% |
| !! | TAATCTATTCTAACTTAAGA+TGG | - | chr5_3:42756857-42756876 | None:intergenic | 20.0% |
| !!! | TCTCATTTTTTTGATCAAGT+GGG | + | chr5_3:42755631-42755650 | Msa0812600:five_prime_UTR | 25.0% |
| ! | TTCCTTTCAAAAAATTCTTG+TGG | + | chr5_3:42755721-42755740 | Msa0812600:five_prime_UTR | 25.0% |
| !!! | TACCACAAGAATTTTTTGAA+AGG | - | chr5_3:42755726-42755745 | None:intergenic | 25.0% |
| ! | AAAACTTGATAAGATGAAGT+GGG | + | chr5_3:42755895-42755914 | Msa0812600:exon | 25.0% |
| !! | TCAAATATTTTGTTCTCTTC+TGG | - | chr5_3:42756001-42756020 | None:intergenic | 25.0% |
| ! | ATGTTTGTAATATAGAAGCT+GGG | + | chr5_3:42756137-42756156 | Msa0812600:CDS | 25.0% |
| ! | TTGAGAAAGAATAGGATTAA+AGG | + | chr5_3:42756534-42756553 | Msa0812600:intron | 25.0% |
| ! | TTAAAGGATGGAATTTACAA+AGG | + | chr5_3:42756550-42756569 | Msa0812600:intron | 25.0% |
| !!! | GTTGGATATTTTCATTTTTC+AGG | + | chr5_3:42756626-42756645 | Msa0812600:intron | 25.0% |
| !!! | TCATTTTTCAGGTTGTAATA+AGG | + | chr5_3:42756637-42756656 | Msa0812600:intron | 25.0% |
| !!! | GTTTTTTTAGCTTTCACTTA+AGG | + | chr5_3:42756659-42756678 | Msa0812600:intron | 25.0% |
| ! | GAATAGGTTATGATATAAGT+TGG | + | chr5_3:42756789-42756808 | Msa0812600:intron | 25.0% |
| !!! | ATGATATAAGTTGGTTTTGT+AGG | + | chr5_3:42756798-42756817 | Msa0812600:intron | 25.0% |
| !!! | TGATATAAGTTGGTTTTGTA+GGG | + | chr5_3:42756799-42756818 | Msa0812600:intron | 25.0% |
| !! | TTATGAAATACTTTTGAGCA+TGG | - | chr5_3:42756990-42757009 | None:intergenic | 25.0% |
| ! | GTTAATCTCTCAGAAAAAAT+TGG | + | chr5_3:42757066-42757085 | Msa0812600:CDS | 25.0% |
| ! | GAATAATCAACAAAATGCTA+TGG | + | chr5_3:42757203-42757222 | Msa0812600:CDS | 25.0% |
| ! | AACATTATTCACATGCATAA+AGG | + | chr5_3:42757376-42757395 | Msa0812600:CDS | 25.0% |
| ! | AAGATATTCACATATACCTT+GGG | - | chr5_3:42757453-42757472 | None:intergenic | 25.0% |
| ! | TAAGATATTCACATATACCT+TGG | - | chr5_3:42757454-42757473 | None:intergenic | 25.0% |
| ! | TATGTGAATATCTTATGTTC+TGG | + | chr5_3:42757459-42757478 | Msa0812600:three_prime_UTR | 25.0% |
| ! | TCTTATATCATTGTCAATCA+AGG | - | chr5_3:42757601-42757620 | None:intergenic | 25.0% |
| !!! | ATTTCTAGTGAAGTTTATCA+TGG | + | chr5_3:42757794-42757813 | Msa0812600:three_prime_UTR | 25.0% |
| !!! | CTCTCATTTTTTTGATCAAG+TGG | + | chr5_3:42755630-42755649 | Msa0812600:five_prime_UTR | 30.0% |
| AGGAAAAAAAATGAGAGCAA+AGG | - | chr5_3:42755758-42755777 | None:intergenic | 30.0% | |
| AAATTTGAATAGGGAAACAG+AGG | - | chr5_3:42755826-42755845 | None:intergenic | 30.0% | |
| ! | GTTTTCACAAGATCAAACTA+TGG | - | chr5_3:42755880-42755899 | None:intergenic | 30.0% |
| GAAAACTTGATAAGATGAAG+TGG | + | chr5_3:42755894-42755913 | Msa0812600:exon | 30.0% | |
| TGATGTGATGAGACAATATA+AGG | + | chr5_3:42756102-42756121 | Msa0812600:CDS | 30.0% | |
| GATGTTTGTAATATAGAAGC+TGG | + | chr5_3:42756136-42756155 | Msa0812600:CDS | 30.0% | |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr5_3:42756192-42756211 | Msa0812600:CDS | 30.0% |
| GAAAGAATAGGATTAAAGGA+TGG | + | chr5_3:42756538-42756557 | Msa0812600:intron | 30.0% | |
| TACAAAGGTAATTTAGACCT+AGG | + | chr5_3:42756565-42756584 | Msa0812600:intron | 30.0% | |
| ACAAATTCATCTTGTAAGGT+AGG | - | chr5_3:42756726-42756745 | None:intergenic | 30.0% | |
| CCTTACAAATTCATCTTGTA+AGG | - | chr5_3:42756730-42756749 | None:intergenic | 30.0% | |
| CCTTACAAGATGAATTTGTA+AGG | + | chr5_3:42756727-42756746 | Msa0812600:intron | 30.0% | |
| ! | AAGATGATATTCGAGGATTT+TGG | - | chr5_3:42756763-42756782 | None:intergenic | 30.0% |
| CTAACTTAAGATGATATTCG+AGG | - | chr5_3:42756770-42756789 | None:intergenic | 30.0% | |
| TATTTCATAAGACAGCTTTC+AGG | + | chr5_3:42757000-42757019 | Msa0812600:CDS | 30.0% | |
| ! | ATGAAAACTTGTTCATGAGT+TGG | - | chr5_3:42757237-42757256 | None:intergenic | 30.0% |
| ! | AACTCATGAACAAGTTTTCA+TGG | + | chr5_3:42757236-42757255 | Msa0812600:CDS | 30.0% |
| CAAGACCAAAATCTTCAAAA+AGG | + | chr5_3:42757294-42757313 | Msa0812600:CDS | 30.0% | |
| !! | CAAGACCTTTTTGAAGATTT+TGG | - | chr5_3:42757302-42757321 | None:intergenic | 30.0% |
| ATTTGGAAAACCATGTTATG+TGG | - | chr5_3:42757342-42757361 | None:intergenic | 30.0% | |
| TCAAGTCAGTATAATGATTG+AGG | + | chr5_3:42757548-42757567 | Msa0812600:three_prime_UTR | 30.0% | |
| !! | CCAAAATTTTAACACGTCTT+CGG | - | chr5_3:42757634-42757653 | None:intergenic | 30.0% |
| AATCAACACTATGGACTTAT+TGG | - | chr5_3:42757743-42757762 | None:intergenic | 30.0% | |
| !!! | AAGTCCATAGTGTTGATTTT+TGG | + | chr5_3:42757745-42757764 | Msa0812600:three_prime_UTR | 30.0% |
| !!! | AGTCCATAGTGTTGATTTTT+GGG | + | chr5_3:42757746-42757765 | Msa0812600:three_prime_UTR | 30.0% |
| !!! | TCTCTCTGCTGTTTTCTAAT+TGG | + | chr5_3:42755318-42755337 | Msa0812600:five_prime_UTR | 35.0% |
| AATTTGGAAAGCAGTTGAGA+AGG | - | chr5_3:42755380-42755399 | None:intergenic | 35.0% | |
| TTCTCAACTGCTTTCCAAAT+TGG | + | chr5_3:42755379-42755398 | Msa0812600:five_prime_UTR | 35.0% | |
| TCTCAACTGCTTTCCAAATT+GGG | + | chr5_3:42755380-42755399 | Msa0812600:five_prime_UTR | 35.0% | |
| CTTGAAAACTTAGCCCAATT+TGG | - | chr5_3:42755396-42755415 | None:intergenic | 35.0% | |
| AAAAATGAGAGCAAAGGTAG+AGG | - | chr5_3:42755752-42755771 | None:intergenic | 35.0% | |
| AACAAAACAGAGGAAAACAG+AGG | - | chr5_3:42755796-42755815 | None:intergenic | 35.0% | |
| AGGAAAACAGAACAAAACAG+AGG | - | chr5_3:42755806-42755825 | None:intergenic | 35.0% | |
| TGATAAGATGAAGTGGGAAA+TGG | + | chr5_3:42755901-42755920 | Msa0812600:exon | 35.0% | |
| CATACACACAAAACTCCAAT+TGG | + | chr5_3:42755942-42755961 | Msa0812600:CDS | 35.0% | |
| ACAAAACTCCAATTGGTGTA+TGG | + | chr5_3:42755949-42755968 | Msa0812600:CDS | 35.0% | |
| AGTTCATGATAAAGATACGC+CGG | + | chr5_3:42756033-42756052 | Msa0812600:CDS | 35.0% | |
| AAAGTAGCTGAAATGATACC+AGG | + | chr5_3:42756067-42756086 | Msa0812600:CDS | 35.0% | |
| TGAAATGATACCAGGAAAGA+CGG | + | chr5_3:42756075-42756094 | Msa0812600:CDS | 35.0% | |
| ! | TCTAAGGTAAAAGGTGAAGT+AGG | - | chr5_3:42756190-42756209 | None:intergenic | 35.0% |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr5_3:42756191-42756210 | Msa0812600:CDS | 35.0% |
| ! | TTCACCCAATCTAAGGTAAA+AGG | - | chr5_3:42756199-42756218 | None:intergenic | 35.0% |
| TCTGGTTATGATGAATTCAG+AGG | + | chr5_3:42756223-42756242 | Msa0812600:CDS | 35.0% | |
| TATGATGAATTCAGAGGAAG+TGG | + | chr5_3:42756229-42756248 | Msa0812600:CDS | 35.0% | |
| TTGTGAGCTTGAGAAAGAAT+AGG | + | chr5_3:42756526-42756545 | Msa0812600:intron | 35.0% | |
| AAAGGTAATTTAGACCTAGG+AGG | + | chr5_3:42756568-42756587 | Msa0812600:intron | 35.0% | |
| !! | TCCTGCAGATTATTTCTACT+AGG | + | chr5_3:42756883-42756902 | Msa0812600:intron | 35.0% |
| TGGTGAAGTGGATCTATTAT+TGG | - | chr5_3:42757112-42757131 | None:intergenic | 35.0% | |
| TCATAGGAGTTAAAACCATG+AGG | - | chr5_3:42757264-42757283 | None:intergenic | 35.0% | |
| !!! | TCATGGTTTTAACTCCTATG+AGG | + | chr5_3:42757263-42757282 | Msa0812600:CDS | 35.0% |
| !! | GTCTTGCATTTTAACCTCAT+AGG | - | chr5_3:42757280-42757299 | None:intergenic | 35.0% |
| GTCTTCTTATCCACATAACA+TGG | + | chr5_3:42757329-42757348 | Msa0812600:CDS | 35.0% | |
| GTTGTGATGAATGTTGCATT+TGG | - | chr5_3:42757359-42757378 | None:intergenic | 35.0% | |
| GTGAATATCTTATGTTCTGG+TGG | + | chr5_3:42757462-42757481 | Msa0812600:three_prime_UTR | 35.0% | |
| AGTCAGTATAATGATTGAGG+TGG | + | chr5_3:42757551-42757570 | Msa0812600:three_prime_UTR | 35.0% | |
| GTCAGTATAATGATTGAGGT+GGG | + | chr5_3:42757552-42757571 | Msa0812600:three_prime_UTR | 35.0% | |
| ! | CCGAAGACGTGTTAAAATTT+TGG | + | chr5_3:42757631-42757650 | Msa0812600:three_prime_UTR | 35.0% |
| TTCTTGGCATATCAACTTAC+AGG | + | chr5_3:42757658-42757677 | Msa0812600:three_prime_UTR | 35.0% | |
| TCACCCAAAAATCAACACTA+TGG | - | chr5_3:42757752-42757771 | None:intergenic | 35.0% | |
| TGAGAAGGAAGAAAGGGATA+AGG | - | chr5_3:42755365-42755384 | None:intergenic | 40.0% | |
| AGCAGTTGAGAAGGAAGAAA+GGG | - | chr5_3:42755371-42755390 | None:intergenic | 40.0% | |
| AAGCAGTTGAGAAGGAAGAA+AGG | - | chr5_3:42755372-42755391 | None:intergenic | 40.0% | |
| AGAGGAAGATAAAGCAGAGA+AGG | - | chr5_3:42755778-42755797 | None:intergenic | 40.0% | |
| TTTGTGTGTATGATGCAGGA+GGG | - | chr5_3:42755934-42755953 | None:intergenic | 40.0% | |
| ! | TTTTGTGTGTATGATGCAGG+AGG | - | chr5_3:42755935-42755954 | None:intergenic | 40.0% |
| !! | GAGTTTTGTGTGTATGATGC+AGG | - | chr5_3:42755938-42755957 | None:intergenic | 40.0% |
| GCTATCTTCCATACACCAAT+TGG | - | chr5_3:42755960-42755979 | None:intergenic | 40.0% | |
| AAGATAGCATGACCACACAA+TGG | + | chr5_3:42755972-42755991 | Msa0812600:CDS | 40.0% | |
| !! | GAAGTAGGAGTGTTATAACC+AGG | - | chr5_3:42756175-42756194 | None:intergenic | 40.0% |
| AGAACTGTTCACCCAATCTA+AGG | - | chr5_3:42756206-42756225 | None:intergenic | 40.0% | |
| TTAGATTGGGTGAACAGTTC+TGG | + | chr5_3:42756205-42756224 | Msa0812600:CDS | 40.0% | |
| TTGTGTTCTTCTTCAGTCCA+TGG | - | chr5_3:42756307-42756326 | None:intergenic | 40.0% | |
| ! | TGGTTTGCGCTAATCGTTAA+AGG | - | chr5_3:42756453-42756472 | None:intergenic | 40.0% |
| GTAATTTAGACCTAGGAGGT+AGG | + | chr5_3:42756572-42756591 | Msa0812600:intron | 40.0% | |
| ! | AATTGTTGTTCCTACCTCCT+AGG | - | chr5_3:42756585-42756604 | None:intergenic | 40.0% |
| GCCTAGTAGAAATAATCTGC+AGG | - | chr5_3:42756887-42756906 | None:intergenic | 40.0% | |
| CTACTAGGCCTAAAGAAGTA+TGG | + | chr5_3:42756898-42756917 | Msa0812600:CDS | 40.0% | |
| CACCTTTGCCATACTTCTTT+AGG | - | chr5_3:42756909-42756928 | None:intergenic | 40.0% | |
| ! | AGAAGTATGGCAAAGGTGAT+TGG | + | chr5_3:42756911-42756930 | Msa0812600:CDS | 40.0% |
| TTCATAAGACAGCTTTCAGG+AGG | + | chr5_3:42757003-42757022 | Msa0812600:CDS | 40.0% | |
| TTTCAGGAGGAAAAGACAAG+AGG | + | chr5_3:42757016-42757035 | Msa0812600:CDS | 40.0% | |
| GAAAGTAACATGGGATTCTG+TGG | - | chr5_3:42757132-42757151 | None:intergenic | 40.0% | |
| TGCTGGTGTGAAAGTAACAT+GGG | - | chr5_3:42757141-42757160 | None:intergenic | 40.0% | |
| ! | CAAGTTTTCATGGATCCTCA+TGG | + | chr5_3:42757246-42757265 | Msa0812600:CDS | 40.0% |
| !! | AGAGTGTCTGAATTTTCCCA+AGG | + | chr5_3:42757434-42757453 | Msa0812600:three_prime_UTR | 40.0% |
| !! | TCTTATGTTCTGGTGGATTG+AGG | + | chr5_3:42757469-42757488 | Msa0812600:three_prime_UTR | 40.0% |
| !! | CTTATGTTCTGGTGGATTGA+GGG | + | chr5_3:42757470-42757489 | Msa0812600:three_prime_UTR | 40.0% |
| !! | TTATGTTCTGGTGGATTGAG+GGG | + | chr5_3:42757471-42757490 | Msa0812600:three_prime_UTR | 40.0% |
| TTGAGTGTTAAAGTGCATGC+AGG | - | chr5_3:42757532-42757551 | None:intergenic | 40.0% | |
| TGGCATATCAACTTACAGGA+AGG | + | chr5_3:42757662-42757681 | Msa0812600:three_prime_UTR | 40.0% | |
| CTATGGACTTATTGGCATTG+CGG | - | chr5_3:42757735-42757754 | None:intergenic | 40.0% | |
| ATAAAGATACGCCGGATCGA+TGG | + | chr5_3:42756041-42756060 | Msa0812600:CDS | 45.0% | |
| ! | GCTACTTTATGCCATCGATC+CGG | - | chr5_3:42756055-42756074 | None:intergenic | 45.0% |
| ATGATACCAGGAAAGACGGT+CGG | + | chr5_3:42756079-42756098 | Msa0812600:CDS | 45.0% | |
| ! | GGAGTGTTATAACCAGGAAC+TGG | - | chr5_3:42756169-42756188 | None:intergenic | 45.0% |
| TTAGAGCTCCTGAGCAAGAA+AGG | + | chr5_3:42756269-42756288 | Msa0812600:CDS | 45.0% | |
| CCTTTCTTCCTTTCTTGCTC+AGG | - | chr5_3:42756280-42756299 | None:intergenic | 45.0% | |
| CCTGAGCAAGAAAGGAAGAA+AGG | + | chr5_3:42756277-42756296 | Msa0812600:CDS | 45.0% | |
| !! | AAAGGAAGAAAGGAGTGCCA+TGG | + | chr5_3:42756287-42756306 | Msa0812600:CDS | 45.0% |
| ACCAGTTGAGCTTCTAGTGT+TGG | + | chr5_3:42756469-42756488 | Msa0812600:intron | 45.0% | |
| TCCAACACTAGAAGCTCAAC+TGG | - | chr5_3:42756473-42756492 | None:intergenic | 45.0% | |
| ! | GGCCTAAAGAAGTATGGCAA+AGG | + | chr5_3:42756904-42756923 | Msa0812600:CDS | 45.0% |
| CTGCTGGTGTGAAAGTAACA+TGG | - | chr5_3:42757142-42757161 | None:intergenic | 45.0% | |
| !! | AAGTTTGTTGTTGCTGCTGC+TGG | - | chr5_3:42757158-42757177 | None:intergenic | 45.0% |
| ! | CGACTGCGACAAATTTTCGT+TGG | + | chr5_3:42757178-42757197 | Msa0812600:CDS | 45.0% |
| ! | CTGCGACAAATTTTCGTTGG+AGG | + | chr5_3:42757181-42757200 | Msa0812600:CDS | 45.0% |
| AATGATTGAGGTGGGTGAGA+AGG | + | chr5_3:42757560-42757579 | Msa0812600:three_prime_UTR | 45.0% | |
| !! | TTATTTATAAATATATTTAG+AGG | + | chr5_3:42756603-42756622 | Msa0812600:intron | 5.0% |
| !! | TATTTATAAATATATTTAGA+GGG | + | chr5_3:42756604-42756623 | Msa0812600:intron | 5.0% |
| !! | CTCTTCTGGAGTCCATTGTG+TGG | - | chr5_3:42755987-42756006 | None:intergenic | 50.0% |
| !! | GCATGGCTTGCTACTTGAGT+TGG | - | chr5_3:42756973-42756992 | None:intergenic | 50.0% |
| CATGGGATTCTGTGGTGAAG+TGG | - | chr5_3:42757124-42757143 | None:intergenic | 50.0% | |
| ACATCACCGACCGTCTTTCC+TGG | - | chr5_3:42756088-42756107 | None:intergenic | 55.0% | |
| !! | GCTGGGTTGATTCCAGTTCC+TGG | + | chr5_3:42756154-42756173 | Msa0812600:CDS | 55.0% |
| ! | TTGAGGGGAGCGTGCGTTGA+TGG | + | chr5_3:42757486-42757505 | Msa0812600:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 42755304 | 42757857 | 42755304 | ID=Msa0812600;Name=Msa0812600 |
| chr5_3 | mRNA | 42755304 | 42757857 | 42755304 | ID=Msa0812600-mRNA-1;Parent=Msa0812600;Name=Msa0812600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=604|1|1|1|1|1|2|462|307 |
| chr5_3 | exon | 42755304 | 42756326 | 42755304 | ID=Msa0812600-mRNA-1:exon:13138;Parent=Msa0812600-mRNA-1 |
| chr5_3 | exon | 42756891 | 42757857 | 42756891 | ID=Msa0812600-mRNA-1:exon:13139;Parent=Msa0812600-mRNA-1 |
| chr5_3 | five_prime_UTR | 42755304 | 42755907 | 42755304 | ID=Msa0812600-mRNA-1:five_prime_utr;Parent=Msa0812600-mRNA-1 |
| chr5_3 | CDS | 42755908 | 42756326 | 42755908 | ID=Msa0812600-mRNA-1:cds;Parent=Msa0812600-mRNA-1 |
| chr5_3 | CDS | 42756891 | 42757395 | 42756891 | ID=Msa0812600-mRNA-1:cds;Parent=Msa0812600-mRNA-1 |
| chr5_3 | three_prime_UTR | 42757396 | 42757857 | 42757396 | ID=Msa0812600-mRNA-1:three_prime_utr;Parent=Msa0812600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
