AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0812730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812730 MtrunA17_Chr5g0429661 93.803 355 18 3 1 351 1 355 0.0 679
Msa0812730 MtrunA17_Chr4g0058991 46.667 225 104 5 26 248 121 331 2.84e-57 192
Msa0812730 MtrunA17_Chr3g0117511 64.394 132 40 1 117 248 181 305 7.57e-56 188
Msa0812730 MtrunA17_Chr3g0104501 55.249 181 59 7 11 170 5 184 3.38e-55 179
Msa0812730 MtrunA17_Chr7g0228531 50.898 167 75 5 117 282 218 378 2.72e-49 171
Msa0812730 MtrunA17_Chr7g0228481 55.906 127 53 2 117 243 218 341 2.66e-43 155
Msa0812730 MtrunA17_Chr7g0238631 62.136 103 39 0 117 219 111 213 1.49e-40 150
Msa0812730 MtrunA17_Chr3g0104491 41.841 239 76 9 169 350 17 249 1.64e-39 141
Msa0812730 MtrunA17_Chr7g0228401 44.805 154 53 4 118 246 254 400 1.88e-38 143
Msa0812730 MtrunA17_Chr3g0139671 57.282 103 44 0 117 219 83 185 2.41e-38 145
Msa0812730 MtrunA17_Chr1g0177901 46.309 149 71 3 130 277 5 145 3.46e-38 135
Msa0812730 MtrunA17_Chr1g0157731 56.311 103 45 0 117 219 89 191 2.10e-37 142
Msa0812730 MtrunA17_Chr7g0233061 50.376 133 59 2 118 250 179 304 7.18e-37 136
Msa0812730 MtrunA17_Chr5g0397841 57.732 97 41 0 117 213 108 204 7.79e-35 132
Msa0812730 MtrunA17_Chr5g0397841 36.697 109 64 3 109 212 44 152 1.46e-11 65.5
Msa0812730 MtrunA17_Chr4g0008551 53.398 103 48 0 118 220 37 139 1.40e-34 130
Msa0812730 MtrunA17_Chr3g0133601 50.980 102 50 0 118 219 36 137 6.48e-33 122
Msa0812730 MtrunA17_Chr4g0053431 50.962 104 51 0 118 221 4 107 9.09e-33 123
Msa0812730 MtrunA17_Chr2g0323351 34.711 242 121 9 117 329 12 245 2.23e-31 119
Msa0812730 MtrunA17_Chr4g0042501 40.506 158 89 2 100 252 86 243 2.41e-31 122
Msa0812730 MtrunA17_Chr5g0401731 48.077 104 54 0 118 221 14 117 4.50e-31 120
Msa0812730 MtrunA17_Chr4g0022901 49.515 103 49 2 119 219 15 116 1.15e-29 114
Msa0812730 MtrunA17_Chr5g0417621 46.032 126 68 0 100 225 115 240 1.20e-29 118
Msa0812730 MtrunA17_Chr6g0454921 40.164 122 73 0 118 239 14 135 2.38e-29 112
Msa0812730 MtrunA17_Chr8g0342541 49.515 103 49 2 119 219 14 115 4.88e-29 114
Msa0812730 MtrunA17_Chr8g0385321 47.170 106 54 2 119 222 14 119 5.67e-29 114
Msa0812730 MtrunA17_Chr3g0125801 39.759 166 86 2 109 266 6 165 1.12e-28 112
Msa0812730 MtrunA17_Chr5g0437321 47.959 98 51 0 118 215 18 115 1.30e-28 112
Msa0812730 MtrunA17_Chr8g0342521 50.485 103 48 2 119 219 14 115 1.47e-28 113
Msa0812730 MtrunA17_Chr6g0480581 51.000 100 49 0 119 218 4 103 1.49e-28 111
Msa0812730 MtrunA17_Chr2g0309911 38.312 154 80 4 119 258 13 165 1.64e-28 112
Msa0812730 MtrunA17_Chr5g0434571 45.255 137 60 4 87 219 26 151 1.71e-28 113
Msa0812730 MtrunA17_Chr5g0435101 48.544 103 50 2 119 219 13 114 2.00e-28 110
Msa0812730 MtrunA17_Chr2g0281071 43.966 116 64 1 105 219 1 116 2.30e-28 113
Msa0812730 MtrunA17_Chr5g0397231 48.454 97 49 1 119 214 14 110 2.60e-28 112
Msa0812730 MtrunA17_Chr1g0193801 46.154 104 55 1 117 219 12 115 2.88e-28 113
Msa0812730 MtrunA17_Chr4g0022911 46.602 103 52 2 119 219 15 116 3.29e-28 111
Msa0812730 MtrunA17_Chr5g0410961 45.098 102 55 1 119 219 14 115 3.38e-28 112
Msa0812730 MtrunA17_Chr3g0099131 52.830 106 46 3 117 219 41 145 3.81e-28 114
Msa0812730 MtrunA17_Chr6g0452271 32.967 182 110 3 119 299 14 184 4.32e-28 112
Msa0812730 MtrunA17_Chr8g0342481 44.828 116 62 1 119 232 14 129 5.54e-28 112
Msa0812730 MtrunA17_Chr4g0048511 44.444 117 62 2 105 219 1 116 6.47e-28 112
Msa0812730 MtrunA17_Chr4g0022931 47.573 103 51 2 119 219 15 116 7.88e-28 110
Msa0812730 MtrunA17_Chr2g0330041 46.602 103 52 2 119 219 14 115 8.32e-28 112
Msa0812730 MtrunA17_Chr3g0110351 50.476 105 49 2 117 219 12 115 9.32e-28 110
Msa0812730 MtrunA17_Chr3g0080861 50.000 106 49 3 116 218 36 140 9.35e-28 113
Msa0812730 MtrunA17_Chr4g0057031 48.544 103 50 2 119 219 14 115 9.38e-28 109
Msa0812730 MtrunA17_Chr4g0039971 45.763 118 60 3 104 219 1 116 9.62e-28 111
Msa0812730 MtrunA17_Chr6g0460661 47.525 101 53 0 119 219 16 116 1.30e-27 106
Msa0812730 MtrunA17_Chr1g0193371 45.714 105 54 2 117 219 12 115 1.34e-27 111
Msa0812730 MtrunA17_Chr3g0117091 45.714 105 54 2 117 219 12 115 1.67e-27 110
Msa0812730 MtrunA17_Chr4g0044421 38.255 149 88 2 119 266 14 159 2.18e-27 106
Msa0812730 MtrunA17_Chr4g0055981 46.602 103 54 1 113 214 51 153 2.20e-27 107
Msa0812730 MtrunA17_Chr3g0088461 41.880 117 67 1 104 219 9 125 2.65e-27 110
Msa0812730 MtrunA17_Chr2g0328771 42.400 125 67 3 117 237 20 143 2.68e-27 109
Msa0812730 MtrunA17_Chr1g0211161 45.714 105 54 2 117 219 13 116 2.71e-27 107
Msa0812730 MtrunA17_Chr4g0037141 35.503 169 94 4 119 273 14 181 2.74e-27 108
Msa0812730 MtrunA17_Chr4g0032401 41.667 132 73 2 110 240 10 138 2.99e-27 109
Msa0812730 MtrunA17_Chr8g0349261 47.748 111 56 1 105 213 1 111 3.02e-27 108
Msa0812730 MtrunA17_Chr7g0271241 49.495 99 47 2 117 213 12 109 3.07e-27 110
Msa0812730 MtrunA17_Chr8g0354661 48.113 106 52 2 116 219 36 140 3.37e-27 112
Msa0812730 MtrunA17_Chr3g0115821 47.619 105 52 2 117 219 12 115 3.64e-27 109
Msa0812730 MtrunA17_Chr3g0131121 38.776 147 81 5 119 262 14 154 4.36e-27 108
Msa0812730 MtrunA17_Chr1g0186061 49.038 104 50 2 119 220 22 124 4.95e-27 107
Msa0812730 MtrunA17_Chr1g0168661 52.000 100 45 2 115 212 19 117 5.37e-27 107
Msa0812730 MtrunA17_Chr8g0387421 46.392 97 51 1 119 214 14 110 5.49e-27 108
Msa0812730 MtrunA17_Chr3g0103281 45.763 118 62 2 105 221 1 117 5.80e-27 108
Msa0812730 MtrunA17_Chr4g0058631 37.162 148 78 4 117 261 12 147 5.87e-27 109
Msa0812730 MtrunA17_Chr7g0270891 44.231 104 57 1 117 219 12 115 7.82e-27 109
Msa0812730 MtrunA17_Chr6g0460671 42.400 125 66 1 95 219 81 199 7.83e-27 108
Msa0812730 MtrunA17_Chr4g0030881 42.500 120 61 2 113 224 3 122 7.86e-27 107
Msa0812730 MtrunA17_Chr7g0254261 39.205 176 91 3 114 275 84 257 8.23e-27 108
Msa0812730 MtrunA17_Chr4g0042671 45.794 107 57 1 117 222 12 118 1.41e-26 108
Msa0812730 MtrunA17_Chr7g0217741 49.000 100 48 2 117 214 12 110 4.24e-26 106
Msa0812730 MtrunA17_Chr1g0167661 38.636 176 99 4 117 288 12 182 4.37e-26 104
Msa0812730 MtrunA17_Chr5g0395281 44.762 105 55 2 117 219 12 115 4.88e-26 105
Msa0812730 MtrunA17_Chr8g0346561 47.475 99 51 1 117 214 12 110 1.15e-25 104
Msa0812730 MtrunA17_Chr4g0070611 42.857 119 65 2 115 230 10 128 1.40e-25 104
Msa0812730 MtrunA17_Chr4g0022891 39.844 128 73 3 119 244 14 139 1.52e-25 103
Msa0812730 MtrunA17_Chr1g0154031 46.667 105 53 2 117 219 76 179 1.93e-25 105
Msa0812730 MtrunA17_Chr2g0323411 45.192 104 56 1 117 219 12 115 2.47e-25 104
Msa0812730 MtrunA17_Chr1g0192411 48.077 104 53 1 117 219 12 115 2.96e-25 105
Msa0812730 MtrunA17_Chr7g0228891 46.667 105 53 2 117 219 12 115 2.96e-25 102
Msa0812730 MtrunA17_Chr2g0327821 43.750 112 60 2 115 224 4 114 3.98e-25 101
Msa0812730 MtrunA17_Chr1g0209661 43.269 104 58 1 117 219 27 130 4.19e-25 103
Msa0812730 MtrunA17_Chr7g0261281 43.443 122 57 3 117 227 12 132 7.77e-25 102
Msa0812730 MtrunA17_Chr5g0417821 44.860 107 58 1 117 222 7 113 7.86e-25 102
Msa0812730 MtrunA17_Chr4g0068061 47.619 105 52 2 117 219 12 115 9.07e-25 102
Msa0812730 MtrunA17_Chr4g0070641 46.078 102 54 1 113 213 8 109 9.41e-25 99.0
Msa0812730 MtrunA17_Chr1g0203411 48.454 97 47 2 119 213 14 109 1.02e-24 102
Msa0812730 MtrunA17_Chr7g0228231 41.964 112 64 1 119 229 16 127 1.09e-24 99.8
Msa0812730 MtrunA17_Chr7g0275911 45.455 99 53 1 117 214 12 110 1.58e-24 100
Msa0812730 MtrunA17_Chr1g0180391 47.959 98 48 2 117 212 19 115 1.63e-24 100
Msa0812730 MtrunA17_Chr6g0450101 43.590 117 62 3 119 233 16 130 1.91e-24 99.4
Msa0812730 MtrunA17_Chr7g0240821 49.474 95 45 2 122 214 6 99 2.94e-24 99.4
Msa0812730 MtrunA17_Chr1g0194301 34.375 160 100 3 111 268 27 183 3.69e-24 100
Msa0812730 MtrunA17_Chr8g0343831 48.958 96 48 1 119 213 10 105 3.70e-24 99.8
Msa0812730 MtrunA17_Chr8g0334881 44.545 110 59 2 111 218 4 113 5.47e-24 100
Msa0812730 MtrunA17_Chr4g0013361 45.098 102 54 2 119 218 12 113 8.82e-24 99.4
Msa0812730 MtrunA17_Chr6g0453471 44.231 104 57 1 117 219 12 115 9.35e-24 100
Msa0812730 MtrunA17_Chr2g0322521 52.778 108 47 3 117 221 29 135 1.05e-23 100
Msa0812730 MtrunA17_Chr5g0434931 39.823 113 67 1 112 223 30 142 1.28e-23 98.6
Msa0812730 MtrunA17_Chr1g0152011 40.000 120 68 3 119 234 14 133 1.69e-23 99.4
Msa0812730 MtrunA17_Chr7g0233151 55.128 78 28 1 169 246 1 71 2.21e-23 95.1
Msa0812730 MtrunA17_Chr5g0400821 41.228 114 65 2 119 230 14 127 2.36e-23 98.6
Msa0812730 MtrunA17_Chr2g0327351 45.918 98 51 2 119 214 14 111 2.99e-23 98.6
Msa0812730 MtrunA17_Chr4g0054391 38.281 128 76 3 105 230 1 127 3.34e-23 97.8
Msa0812730 MtrunA17_Chr3g0121241 44.444 99 54 1 117 214 42 140 3.45e-23 97.8
Msa0812730 MtrunA17_Chr1g0187761 40.559 143 73 4 117 257 12 144 3.53e-23 97.1
Msa0812730 MtrunA17_Chr1g0167691 30.992 242 145 8 117 345 12 244 3.68e-23 97.1
Msa0812730 MtrunA17_Chr7g0228991 44.330 97 53 1 119 214 31 127 4.47e-23 97.1
Msa0812730 MtrunA17_Chr5g0441141 45.631 103 52 3 119 218 14 115 4.60e-23 97.1
Msa0812730 MtrunA17_Chr7g0274581 42.157 102 58 1 119 219 14 115 4.66e-23 95.5
Msa0812730 MtrunA17_Chr5g0440781 45.631 103 52 3 119 218 14 115 5.53e-23 94.7
Msa0812730 MtrunA17_Chr5g0440761 45.631 103 52 3 119 218 14 115 5.84e-23 96.7
Msa0812730 MtrunA17_Chr5g0434911 41.509 106 61 1 119 223 23 128 1.03e-22 96.3
Msa0812730 MtrunA17_Chr6g0470971 34.351 131 85 1 119 248 16 146 1.03e-22 96.3
Msa0812730 MtrunA17_Chr4g0022881 41.837 98 54 2 119 214 14 110 1.22e-22 94.7
Msa0812730 MtrunA17_Chr2g0311221 41.818 110 62 2 106 214 4 112 1.41e-22 96.7
Msa0812730 MtrunA17_Chr7g0220341 39.683 126 62 3 93 214 10 125 1.53e-22 95.5
Msa0812730 MtrunA17_Chr4g0060721 41.071 112 65 1 119 229 15 126 1.57e-22 96.7
Msa0812730 MtrunA17_Chr1g0194291 33.129 163 108 1 109 270 13 175 1.66e-22 95.1
Msa0812730 MtrunA17_Chr5g0441131 43.137 102 56 2 119 218 11 112 1.87e-22 93.2
Msa0812730 MtrunA17_Chr4g0028311 41.748 103 58 2 119 219 14 116 2.55e-22 95.9
Msa0812730 MtrunA17_Chr3g0135311 42.478 113 62 3 119 229 14 125 3.16e-22 95.9
Msa0812730 MtrunA17_Chr1g0151941 39.252 107 63 2 115 219 10 116 4.49e-22 94.0
Msa0812730 MtrunA17_Chr7g0217221 40.000 125 72 2 115 236 10 134 4.95e-22 94.0
Msa0812730 MtrunA17_Chr1g0203441 36.207 116 73 1 119 233 15 130 5.04e-22 94.0
Msa0812730 MtrunA17_Chr7g0247131 52.564 78 35 1 144 219 4 81 7.58e-22 93.6
Msa0812730 MtrunA17_Chr2g0293911 38.333 120 73 1 117 235 24 143 1.06e-21 94.4
Msa0812730 MtrunA17_Chr7g0264641 42.718 103 57 2 119 219 14 116 1.24e-21 93.2
Msa0812730 MtrunA17_Chr4g0046181 64.407 59 21 0 117 175 219 277 1.27e-21 93.6
Msa0812730 MtrunA17_Chr1g0194951 46.667 105 53 2 117 219 12 115 1.33e-21 94.7
Msa0812730 MtrunA17_Chr3g0092401 34.132 167 100 3 119 279 15 177 2.00e-21 93.2
Msa0812730 MtrunA17_Chr5g0434841 38.655 119 70 2 104 219 5 123 2.13e-21 93.2
Msa0812730 MtrunA17_Chr6g0453211 43.000 100 56 1 115 213 10 109 2.61e-21 92.8
Msa0812730 MtrunA17_Chr4g0068921 35.664 143 90 2 94 235 2 143 3.06e-21 90.1
Msa0812730 MtrunA17_Chr5g0434831 40.367 109 64 1 112 219 2 110 3.32e-21 89.7
Msa0812730 MtrunA17_Chr5g0416341 38.710 124 75 1 122 244 29 152 5.27e-21 93.6
Msa0812730 MtrunA17_Chr4g0072751 43.878 98 53 2 119 214 14 111 1.47e-20 91.3
Msa0812730 MtrunA17_Chr6g0487491 29.268 205 105 7 105 295 1 179 2.03e-20 89.4
Msa0812730 MtrunA17_Chr8g0360111 43.158 95 53 1 119 212 27 121 2.18e-20 89.4
Msa0812730 MtrunA17_Chr3g0099141 48.235 85 43 1 117 200 40 124 4.67e-20 85.5
Msa0812730 MtrunA17_Chr5g0421201 52.564 78 27 1 171 248 12 79 5.99e-20 86.3
Msa0812730 MtrunA17_Chr8g0362231 38.261 115 69 1 122 234 25 139 7.41e-20 90.1
Msa0812730 MtrunA17_Chr7g0254411 39.216 102 61 1 119 219 14 115 1.10e-19 88.6
Msa0812730 MtrunA17_Chr7g0233161 67.925 53 17 0 118 170 298 350 1.58e-19 88.6
Msa0812730 MtrunA17_Chr7g0238651 37.500 120 72 1 114 230 2 121 2.71e-19 87.8
Msa0812730 MtrunA17_Chr7g0269831 49.524 105 50 2 117 219 12 115 4.56e-19 87.0
Msa0812730 MtrunA17_Chr2g0323321 46.341 82 41 2 117 196 11 91 1.95e-18 80.1
Msa0812730 MtrunA17_Chr4g0042611 46.753 77 40 1 117 192 12 88 4.93e-18 78.2
Msa0812730 MtrunA17_Chr8g0342461 46.753 77 39 1 119 193 14 90 1.30e-17 78.6
Msa0812730 MtrunA17_Chr8g0342471 45.455 77 40 1 119 193 14 90 4.57e-17 77.0
Msa0812730 MtrunA17_Chr8g0342531 46.753 77 38 2 119 193 14 89 6.95e-17 77.4
Msa0812730 MtrunA17_Chr8g0342511 45.333 75 38 2 119 191 14 87 5.45e-16 72.8
Msa0812730 MtrunA17_Chr5g0395221 40.260 77 45 1 117 192 12 88 1.57e-15 71.2
Msa0812730 MtrunA17_Chr5g0434901 45.455 66 36 0 152 217 9 74 2.43e-15 71.6
Msa0812730 MtrunA17_Chr3g0093811 42.254 71 41 0 152 222 18 88 5.77e-15 73.9
Msa0812730 MtrunA17_Chr2g0294811 43.529 85 47 1 117 200 12 96 2.42e-14 68.9
Msa0812730 MtrunA17_Chr6g0483051 39.362 94 56 1 119 212 120 212 3.75e-14 73.6
Msa0812730 MtrunA17_Chr6g0483051 36.458 96 60 1 117 212 67 161 3.23e-13 70.9
Msa0812730 MtrunA17_Chr7g0229101 43.939 66 37 0 152 217 8 73 5.05e-14 70.5
Msa0812730 MtrunA17_Chr5g0425591 43.902 82 42 3 119 197 11 91 7.33e-14 66.6
Msa0812730 MtrunA17_Chr6g0453751 41.053 95 46 4 113 197 16 110 1.99e-13 66.6
Msa0812730 MtrunA17_Chr7g0229131 40.299 67 40 0 152 218 8 74 3.35e-12 64.3
Msa0812730 MtrunA17_Chr7g0274481 40.000 90 52 2 116 204 3 91 5.69e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812730 AT5G58850.1 46.739 276 108 6 109 350 95 365 3.15e-67 218
Msa0812730 AT5G11050.1 46.209 277 109 6 108 350 94 364 2.15e-65 213
Msa0812730 AT3G27785.1 55.682 176 74 2 76 250 145 317 1.49e-58 196
Msa0812730 AT4G18770.1 45.415 229 99 7 42 261 141 352 4.86e-58 194
Msa0812730 AT5G40360.1 52.113 142 63 1 109 250 148 284 1.23e-47 165
Msa0812730 AT3G09370.2 61.538 104 40 0 117 220 133 236 4.36e-41 150
Msa0812730 AT3G09370.1 61.538 104 40 0 117 220 128 231 4.36e-41 150
Msa0812730 AT3G09370.3 61.538 104 40 0 117 220 141 244 5.34e-41 150
Msa0812730 AT5G02320.1 61.165 103 40 0 117 219 125 227 2.11e-40 149
Msa0812730 AT5G02320.2 61.165 103 40 0 117 219 125 227 2.11e-40 149
Msa0812730 AT5G02320.3 61.165 103 40 0 117 219 65 167 2.37e-40 148
Msa0812730 AT2G25230.1 49.242 132 60 1 119 250 26 150 3.47e-37 134
Msa0812730 AT5G11510.5 53.398 103 48 0 117 219 79 181 1.08e-36 140
Msa0812730 AT5G11510.2 53.398 103 48 0 117 219 79 181 1.15e-36 140
Msa0812730 AT5G11510.3 53.398 103 48 0 117 219 79 181 1.28e-36 140
Msa0812730 AT5G11510.1 53.398 103 48 0 117 219 79 181 1.28e-36 140
Msa0812730 AT5G11510.4 53.398 103 48 0 117 219 79 181 1.28e-36 140
Msa0812730 AT4G32730.5 53.398 103 48 0 117 219 85 187 8.25e-36 138
Msa0812730 AT4G32730.4 53.398 103 48 0 117 219 85 187 8.25e-36 138
Msa0812730 AT4G32730.3 53.398 103 48 0 117 219 85 187 8.25e-36 138
Msa0812730 AT4G32730.2 53.398 103 48 0 117 219 85 187 8.25e-36 138
Msa0812730 AT4G32730.1 53.398 103 48 0 117 219 85 187 9.67e-36 138
Msa0812730 AT5G40430.1 45.522 134 65 2 117 250 52 177 1.50e-33 125
Msa0812730 AT4G00540.2 47.945 146 72 2 117 258 101 246 4.77e-33 127
Msa0812730 AT4G00540.1 47.945 146 72 2 117 258 99 244 7.91e-33 127
Msa0812730 AT3G55730.1 51.961 102 49 0 118 219 55 156 1.84e-31 122
Msa0812730 AT1G69560.1 36.612 183 107 3 92 269 80 258 4.78e-31 120
Msa0812730 AT1G69560.2 36.612 183 107 3 92 269 96 274 5.01e-31 120
Msa0812730 AT3G11440.2 51.852 108 50 2 116 221 40 147 1.54e-30 121
Msa0812730 AT3G09230.1 51.961 102 49 0 118 219 54 155 1.96e-30 120
Msa0812730 AT1G17950.1 42.466 146 80 2 119 260 5 150 2.45e-30 116
Msa0812730 AT3G50060.1 46.154 104 56 0 118 221 5 108 2.94e-30 117
Msa0812730 AT3G29020.1 41.212 165 84 4 111 274 57 209 3.43e-30 115
Msa0812730 AT3G11440.3 51.852 108 50 2 116 221 40 147 3.63e-30 121
Msa0812730 AT3G11440.4 51.852 108 50 2 116 221 40 147 3.63e-30 121
Msa0812730 AT3G11440.1 51.852 108 50 2 116 221 40 147 3.63e-30 121
Msa0812730 AT5G67300.1 48.039 102 53 0 118 219 5 106 1.69e-29 115
Msa0812730 AT3G29020.2 44.186 129 71 1 111 239 59 186 1.71e-29 115
Msa0812730 AT4G37260.1 47.115 104 55 0 118 221 12 115 1.78e-29 115
Msa0812730 AT4G26930.1 47.115 104 54 1 116 218 18 121 3.31e-29 116
Msa0812730 AT2G23290.1 46.018 113 59 1 109 221 5 115 3.60e-29 114
Msa0812730 AT2G32460.1 46.154 130 61 4 95 221 1 124 4.22e-29 117
Msa0812730 AT2G32460.2 50.926 108 49 3 117 221 6 112 7.26e-29 116
Msa0812730 AT3G28470.1 50.515 97 47 1 119 214 14 110 9.00e-29 114
Msa0812730 AT5G06100.1 50.000 108 52 2 116 221 31 138 1.25e-28 115
Msa0812730 AT4G01680.1 38.571 140 75 2 117 255 12 141 1.46e-28 113
Msa0812730 AT4G01680.3 39.286 140 74 2 117 255 12 141 1.99e-28 111
Msa0812730 AT2G39880.1 49.020 102 52 0 118 219 49 150 2.43e-28 113
Msa0812730 AT1G74080.1 51.961 102 48 1 114 214 9 110 2.90e-28 112
Msa0812730 AT5G06100.5 50.000 108 52 2 116 221 31 138 3.07e-28 115
Msa0812730 AT5G06100.2 50.000 108 52 2 116 221 31 138 3.07e-28 115
Msa0812730 AT5G06100.3 50.000 108 52 2 116 221 31 138 3.07e-28 115
Msa0812730 AT5G06100.4 50.000 108 52 2 116 221 31 138 3.07e-28 115
Msa0812730 AT5G26660.1 44.954 109 57 2 117 223 12 119 3.78e-28 112
Msa0812730 AT1G26780.1 50.000 104 52 0 116 219 95 198 4.33e-28 111
Msa0812730 AT3G12720.1 45.631 103 53 2 119 219 24 125 5.63e-28 111
Msa0812730 AT1G26780.2 50.000 104 52 0 116 219 95 198 6.12e-28 112
Msa0812730 AT1G63910.1 49.485 97 48 1 119 214 14 110 6.28e-28 112
Msa0812730 AT1G18570.1 39.216 153 76 3 117 268 13 149 7.97e-28 112
Msa0812730 AT5G07700.1 48.113 106 54 1 115 219 10 115 9.05e-28 111
Msa0812730 AT5G07700.2 48.113 106 54 1 115 219 10 115 9.05e-28 111
Msa0812730 AT1G66230.1 49.524 105 50 2 117 219 12 115 1.09e-27 110
Msa0812730 AT5G07690.1 50.495 101 49 1 115 214 10 110 1.12e-27 111
Msa0812730 AT1G09540.1 46.789 109 55 2 117 223 12 119 1.18e-27 111
Msa0812730 AT1G57560.1 46.667 105 53 2 117 219 12 115 1.35e-27 110
Msa0812730 AT1G57560.2 46.667 105 53 2 117 219 12 115 1.39e-27 109
Msa0812730 AT3G13890.2 44.118 102 56 1 119 219 14 115 1.60e-27 111
Msa0812730 AT5G14750.1 35.135 185 108 4 119 295 18 198 1.92e-27 107
Msa0812730 AT4G28110.1 46.667 105 55 1 119 222 14 118 2.07e-27 109
Msa0812730 AT5G61420.2 47.170 106 55 1 115 219 10 115 2.44e-27 110
Msa0812730 AT1G74430.1 31.579 247 136 7 117 344 12 244 3.25e-27 108
Msa0812730 AT4G01680.2 36.842 152 73 3 117 255 12 153 3.36e-27 110
Msa0812730 AT5G16770.4 46.154 104 55 1 117 219 12 115 3.60e-27 109
Msa0812730 AT5G16770.3 46.154 104 55 1 117 219 12 115 3.60e-27 109
Msa0812730 AT4G38620.1 46.602 103 52 2 119 219 14 115 3.86e-27 108
Msa0812730 AT1G35515.1 46.078 102 54 1 119 219 14 115 4.40e-27 106
Msa0812730 AT5G55020.1 45.192 104 56 1 116 218 25 128 4.61e-27 112
Msa0812730 AT4G33450.1 49.524 105 50 1 119 220 19 123 4.88e-27 107
Msa0812730 AT5G16770.1 46.154 104 55 1 117 219 12 115 4.98e-27 109
Msa0812730 AT5G16770.2 46.154 104 55 1 117 219 12 115 4.98e-27 109
Msa0812730 AT4G05100.1 43.966 116 64 1 105 219 1 116 6.30e-27 108
Msa0812730 AT1G68320.1 32.701 211 124 6 115 309 17 225 8.03e-27 107
Msa0812730 AT4G12350.1 48.544 103 50 2 119 219 14 115 9.07e-27 107
Msa0812730 AT3G61250.1 51.515 99 45 2 117 213 12 109 1.36e-26 107
Msa0812730 AT4G21440.1 45.192 104 56 1 117 219 12 115 1.38e-26 108
Msa0812730 AT3G13890.1 41.441 111 55 2 119 219 14 124 1.39e-26 108
Msa0812730 AT5G17800.1 44.167 120 64 1 114 230 88 207 1.52e-26 107
Msa0812730 AT5G10280.1 45.714 105 54 2 117 219 12 115 1.60e-26 108
Msa0812730 AT3G08500.1 46.154 104 55 1 117 219 30 133 1.77e-26 108
Msa0812730 AT5G65230.1 47.619 105 52 2 117 219 12 115 2.17e-26 107
Msa0812730 AT4G22680.1 47.573 103 51 2 119 219 14 115 2.32e-26 106
Msa0812730 AT4G13480.1 46.565 131 60 4 115 243 4 126 2.34e-26 106
Msa0812730 AT3G23250.1 42.520 127 68 3 117 239 12 137 2.78e-26 106
Msa0812730 AT3G02940.2 45.192 104 56 1 117 219 12 115 3.15e-26 106
Msa0812730 AT3G24310.1 49.565 115 50 3 119 226 20 133 3.63e-26 105
Msa0812730 AT5G60890.1 47.170 106 55 1 115 219 10 115 4.07e-26 106
Msa0812730 AT5G12870.1 44.118 102 56 1 119 219 20 121 4.42e-26 105
Msa0812730 AT3G02940.1 45.192 104 56 1 117 219 12 115 4.56e-26 106
Msa0812730 AT3G02940.3 45.192 104 56 1 117 219 12 115 4.56e-26 106
Msa0812730 AT5G56110.1 46.610 118 61 2 105 221 1 117 4.67e-26 106
Msa0812730 AT1G22640.1 44.660 103 54 2 119 219 14 115 5.62e-26 105
Msa0812730 AT1G73410.1 51.402 107 49 1 119 222 6 112 5.78e-26 104
Msa0812730 AT4G09460.1 43.689 103 55 2 119 219 14 115 6.15e-26 104
Msa0812730 AT1G73410.2 51.402 107 49 1 119 222 6 112 6.36e-26 103
Msa0812730 AT5G59780.3 41.803 122 68 2 111 230 2 122 1.14e-25 103
Msa0812730 AT5G35550.1 40.984 122 71 1 107 227 4 125 1.22e-25 103
Msa0812730 AT3G01530.1 38.150 173 98 5 109 277 17 184 1.36e-25 102
Msa0812730 AT5G16600.1 49.524 105 50 2 117 219 12 115 1.49e-25 105
Msa0812730 AT2G26960.1 46.602 103 54 1 117 218 20 122 1.57e-25 106
Msa0812730 AT3G46130.1 43.860 114 61 2 119 230 11 123 2.39e-25 103
Msa0812730 AT4G34990.1 44.340 106 58 1 119 223 14 119 2.74e-25 103
Msa0812730 AT5G52600.1 42.373 118 66 2 110 225 5 122 3.34e-25 101
Msa0812730 AT5G40330.1 41.284 109 63 1 107 214 2 110 3.91e-25 101
Msa0812730 AT5G15310.4 47.959 98 50 1 117 213 12 109 4.48e-25 102
Msa0812730 AT5G15310.1 45.192 104 56 1 117 219 12 115 4.57e-25 103
Msa0812730 AT5G15310.2 45.192 104 56 1 117 219 12 115 4.77e-25 103
Msa0812730 AT3G01140.2 47.959 98 50 1 117 213 12 109 4.89e-25 104
Msa0812730 AT3G53200.1 44.860 107 56 2 115 219 7 112 7.04e-25 101
Msa0812730 AT3G01140.1 47.959 98 50 1 117 213 55 152 7.10e-25 104
Msa0812730 AT5G54230.1 44.118 102 56 1 119 219 14 115 7.24e-25 103
Msa0812730 AT1G06180.1 42.373 118 65 2 117 232 12 128 7.85e-25 101
Msa0812730 AT4G17785.1 42.735 117 64 2 105 219 1 116 8.13e-25 103
Msa0812730 AT4G17785.2 42.735 117 64 2 105 219 1 116 9.23e-25 103
Msa0812730 AT3G13540.1 39.831 118 70 1 107 223 13 130 1.07e-24 101
Msa0812730 AT2G26950.1 43.119 109 53 2 115 218 14 118 1.28e-24 103
Msa0812730 AT2G16720.1 42.718 103 56 2 119 219 14 115 1.43e-24 101
Msa0812730 AT5G40350.1 42.742 124 66 2 119 241 19 138 1.46e-24 100
Msa0812730 AT1G34670.1 44.231 104 57 1 117 219 12 115 1.79e-24 102
Msa0812730 AT5G62320.1 44.737 114 55 3 117 222 13 126 2.51e-24 100
Msa0812730 AT1G48000.1 40.517 116 68 1 119 233 34 149 5.37e-24 99.4
Msa0812730 AT3G27810.1 40.602 133 76 2 119 250 22 152 5.44e-24 99.0
Msa0812730 AT2G31180.1 42.982 114 62 2 119 230 14 126 6.20e-24 99.4
Msa0812730 AT5G39700.1 38.583 127 77 1 93 218 29 155 6.31e-24 97.8
Msa0812730 AT2G47190.1 40.476 126 73 2 109 233 13 137 8.33e-24 99.4
Msa0812730 AT1G16490.1 42.500 120 65 3 119 235 16 134 1.04e-23 99.4
Msa0812730 AT3G27920.1 45.361 97 52 1 119 214 16 112 1.09e-23 98.2
Msa0812730 AT5G57620.1 42.857 112 62 2 119 228 14 125 1.19e-23 100
Msa0812730 AT5G23000.1 42.735 117 64 3 105 219 1 116 1.60e-23 99.8
Msa0812730 AT3G30210.1 28.959 221 141 7 119 337 29 235 1.65e-23 98.6
Msa0812730 AT3G48920.1 44.554 101 55 1 119 218 20 120 1.96e-23 98.2
Msa0812730 AT4G25560.1 41.593 113 65 1 108 219 1 113 2.09e-23 98.6
Msa0812730 AT1G18710.1 42.453 106 60 1 119 223 14 119 3.82e-23 97.4
Msa0812730 AT3G60460.1 45.283 106 56 2 115 218 9 114 5.78e-23 97.8
Msa0812730 AT3G62610.1 45.098 102 55 1 119 219 14 115 6.70e-23 98.2
Msa0812730 AT5G14340.1 43.810 105 56 2 117 219 24 127 7.92e-23 96.7
Msa0812730 AT1G56160.1 41.748 103 57 2 119 219 16 117 1.05e-22 97.1
Msa0812730 AT5G62470.1 41.379 116 67 1 119 234 14 128 1.55e-22 97.4
Msa0812730 AT3G49690.1 44.545 110 57 3 119 224 14 123 1.61e-22 96.7
Msa0812730 AT5G49330.1 45.192 104 56 1 117 219 12 115 1.64e-22 97.1
Msa0812730 AT5G49620.1 39.370 127 76 1 108 233 17 143 1.73e-22 96.7
Msa0812730 AT1G25340.1 44.660 103 54 2 119 219 20 121 2.86e-22 95.5
Msa0812730 AT1G79180.1 33.136 169 95 4 119 285 16 168 3.36e-22 95.5
Msa0812730 AT1G74650.1 42.241 116 65 2 105 219 1 115 1.21e-21 94.4
Msa0812730 AT1G25340.2 42.574 101 54 1 119 219 20 116 1.38e-21 93.6
Msa0812730 AT5G65790.1 44.545 110 57 3 119 224 14 123 1.69e-21 94.7
Msa0812730 AT3G47600.1 37.008 127 79 1 119 244 14 140 1.69e-21 94.0
Msa0812730 AT1G66370.1 38.017 121 74 1 112 231 3 123 1.76e-21 92.4
Msa0812730 AT2G47460.1 43.137 102 57 1 119 219 14 115 2.71e-21 94.0
Msa0812730 AT1G25340.3 42.574 101 54 1 119 219 20 116 2.98e-21 93.2
Msa0812730 AT3G06490.1 39.496 119 69 2 117 233 19 136 3.53e-21 93.2
Msa0812730 AT5G26660.2 48.611 72 37 0 152 223 17 88 4.06e-21 92.8
Msa0812730 AT5G62470.2 41.026 117 67 2 119 234 14 129 5.41e-21 93.2
Msa0812730 AT4G37780.1 37.273 110 67 2 119 226 14 123 7.21e-21 92.0
Msa0812730 AT1G66380.1 45.098 102 55 1 113 213 4 105 1.30e-20 87.0
Msa0812730 AT5G52260.1 44.660 103 54 2 119 219 14 115 1.66e-20 90.1
Msa0812730 AT3G28910.1 45.833 96 51 1 119 213 14 109 2.26e-20 90.9
Msa0812730 AT1G56650.1 44.660 103 56 1 113 214 4 106 3.07e-20 89.0
Msa0812730 AT5G14750.3 33.113 151 90 3 152 295 18 164 5.38e-20 86.3
Msa0812730 AT3G12820.1 39.252 107 62 2 119 223 16 121 7.57e-20 87.8
Msa0812730 AT1G14350.2 38.938 113 68 1 122 233 28 140 1.51e-19 89.7
Msa0812730 AT1G14350.1 38.938 113 68 1 122 233 28 140 1.51e-19 89.7
Msa0812730 AT1G66390.1 45.098 102 55 1 113 213 4 105 1.77e-19 87.0
Msa0812730 AT5G35550.2 47.368 76 40 0 152 227 53 128 1.82e-19 87.0
Msa0812730 AT2G02820.2 40.741 108 63 1 122 228 33 140 3.82e-19 89.0
Msa0812730 AT1G08810.1 41.237 97 56 1 119 214 14 110 3.84e-19 86.7
Msa0812730 AT2G02820.1 40.741 108 63 1 122 228 33 140 3.97e-19 88.6
Msa0812730 AT5G49620.2 35.461 141 76 2 108 233 17 157 4.44e-19 87.0
Msa0812730 AT2G02820.3 43.956 91 51 0 122 212 33 123 5.11e-19 87.0
Msa0812730 AT2G36890.1 40.777 103 59 2 119 219 14 116 6.95e-19 86.3
Msa0812730 AT5G40350.2 44.444 90 46 1 152 241 8 93 1.18e-18 82.8
Msa0812730 AT1G79180.2 31.034 145 66 2 119 229 16 160 1.20e-18 85.9
Msa0812730 AT2G36890.2 40.777 103 59 2 119 219 55 157 1.67e-18 85.9
Msa0812730 AT3G27810.2 45.556 90 47 1 152 241 7 94 1.70e-18 82.4
Msa0812730 AT5G59780.2 44.304 79 44 0 152 230 23 101 4.45e-18 82.4
Msa0812730 AT2G37630.1 38.318 107 63 1 121 224 6 112 1.18e-17 83.6
Msa0812730 AT3G46130.3 44.304 79 44 0 152 230 13 91 1.95e-17 80.9
Msa0812730 AT3G46130.4 44.304 79 44 0 152 230 23 101 1.97e-17 80.9
Msa0812730 AT3G53200.2 48.529 68 35 0 152 219 12 79 7.69e-17 78.6
Msa0812730 AT3G47600.2 35.345 116 72 1 129 244 22 134 1.59e-16 79.7
Msa0812730 AT3G12820.2 44.444 72 40 0 152 223 2 73 7.25e-16 75.5
Msa0812730 AT3G18100.1 38.144 97 58 2 117 212 493 588 2.37e-15 77.8
Msa0812730 AT3G18100.1 36.170 94 60 0 119 212 546 639 4.26e-14 73.9
Msa0812730 AT3G18100.3 38.144 97 58 2 117 212 445 540 2.63e-15 77.8
Msa0812730 AT3G18100.3 36.170 94 60 0 119 212 498 591 4.52e-14 73.9
Msa0812730 AT3G23250.2 44.304 79 42 1 163 239 2 80 3.28e-15 74.3
Msa0812730 AT3G18100.4 38.144 97 58 2 117 212 332 427 4.31e-15 77.0
Msa0812730 AT3G18100.4 36.170 94 60 0 119 212 385 478 7.07e-14 73.2
Msa0812730 AT3G18100.2 38.144 97 58 2 117 212 280 375 5.19e-15 76.6
Msa0812730 AT3G18100.2 36.170 94 60 0 119 212 333 426 8.50e-14 72.8
Msa0812730 AT5G14750.4 38.144 97 56 2 163 259 2 94 3.32e-14 69.7
Msa0812730 AT5G14750.2 38.144 97 56 2 163 259 2 94 3.32e-14 69.7
Msa0812730 AT1G71030.2 40.000 65 39 0 155 219 5 69 7.63e-14 69.7
Msa0812730 AT1G71030.1 40.000 65 39 0 155 219 19 83 8.68e-14 69.7
Msa0812730 AT1G22640.3 45.614 57 31 0 163 219 2 58 1.28e-13 69.3
Msa0812730 AT1G66380.3 47.619 63 33 0 152 214 11 73 1.04e-12 64.3
Msa0812730 AT1G18960.1 32.812 128 77 5 119 245 10 129 1.44e-11 65.1

Find 73 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCAACGGTTTCCAATTT+TGG 0.083397 5_3:+43050977 None:intergenic
TCCAAATGCATGTTGTAATT+TGG 0.099272 5_3:+43050570 None:intergenic
AAGCTTGATTCTTGAGTATT+TGG 0.147400 5_3:+43052916 None:intergenic
TCATTTGCGTCCTGATATTA+AGG 0.222411 5_3:-43052423 Msa0812730:intron
AATATGTTCCCTTACTCTTA+TGG 0.232467 5_3:-43052961 Msa0812730:CDS
AGCAATATGGCGAAAGAAAA+TGG 0.253903 5_3:-43052508 Msa0812730:CDS
CCAAATGCATGTTGTAATTT+GGG 0.294889 5_3:+43050571 None:intergenic
GTCAATGGCGTTAAAGTCTT+TGG 0.302447 5_3:-43053075 Msa0812730:CDS
GTAGCTACACATGCCAAAAT+TGG 0.303292 5_3:-43050990 Msa0812730:CDS
ATCATTGGAATGCCACTAAA+AGG 0.314844 5_3:-43050908 Msa0812730:CDS
CTATGATGGATAGATTCTTA+TGG 0.321992 5_3:-43053026 Msa0812730:CDS
CATAAGAATCTATCCATCAT+AGG 0.343616 5_3:+43053027 None:intergenic
CTTAAGGATATTCAAGGTTA+TGG 0.350445 5_3:-43052826 Msa0812730:CDS
TAAGGCACAATGTGGAAGTT+TGG 0.351661 5_3:+43052845 None:intergenic
TTGAGAGAGGTAAAGATCAT+AGG 0.352210 5_3:+43050518 None:intergenic
GAATCAAGCTTTGTTGTTGA+TGG 0.356694 5_3:-43052904 Msa0812730:CDS
CCCAAATTACAACATGCATT+TGG 0.367909 5_3:-43050571 Msa0812730:CDS
TATGATGGATAGATTCTTAT+GGG 0.372801 5_3:-43053025 Msa0812730:CDS
AACTTCCACATTGTGCCTTA+AGG 0.380633 5_3:-43052842 Msa0812730:CDS
ATAAAGTTGGTTAAGCAATA+TGG 0.389260 5_3:-43052521 Msa0812730:CDS
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 5_3:-43052482 Msa0812730:CDS
TATTTATACAGAAAGATAGT+TGG 0.402397 5_3:-43051037 Msa0812730:intron
TCCATTGAAATCATGGTAAG+AGG 0.410425 5_3:-43053111 None:intergenic
TTGTATGAAGTGTAATTCAT+TGG 0.411392 5_3:+43050671 None:intergenic
AAGTGTTGCATGAGAGGAAG+AGG 0.420763 5_3:+43050758 None:intergenic
GAAGAATGAAACTAATTTCA+AGG 0.430629 5_3:-43050859 Msa0812730:CDS
ATATATCTAACCTTAATATC+AGG 0.434454 5_3:+43052413 None:intergenic
TTAAAGGAAACTGATAAAGT+TGG 0.449247 5_3:-43052534 Msa0812730:intron
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 5_3:-43052477 Msa0812730:CDS
GAGATAGCAAAGAAGATTCC+AGG 0.462177 5_3:-43050954 Msa0812730:CDS
GCATGTTGTAATTTGGGCAT+TGG 0.468692 5_3:+43050577 None:intergenic
TTGTGCCTTAAGGATATTCA+AGG 0.475669 5_3:-43052832 Msa0812730:CDS
TAAGGAAAGTGTTGCATGAG+AGG 0.479295 5_3:+43050752 None:intergenic
CATAACCTTGAATATCCTTA+AGG 0.482233 5_3:+43052827 None:intergenic
TGAGAGAGGTAAAGATCATA+GGG 0.483652 5_3:+43050519 None:intergenic
TGGTTGGAACCATAAGAGTA+AGG 0.488644 5_3:+43052952 None:intergenic
TGCCAAAATTGGAAACCGTT+GGG 0.495529 5_3:-43050979 Msa0812730:CDS
ATGGTAAGAGGAGAAAATCA+TGG 0.499442 5_3:-43053099 Msa0812730:CDS
GCAATATGGCGAAAGAAAAT+GGG 0.501322 5_3:-43052507 Msa0812730:CDS
GTTCCAACCATGAGTTTATG+TGG 0.505567 5_3:-43052939 Msa0812730:CDS
ATGCCAAAATTGGAAACCGT+TGG 0.505828 5_3:-43050980 Msa0812730:CDS
AGTTATCCTTCCCACAATGT+TGG 0.513482 5_3:+43052795 None:intergenic
GGTGAAAACACCAACATTGT+GGG 0.515105 5_3:-43052805 Msa0812730:CDS
GGAGAAAATCATGGGGTCAA+TGG 0.517549 5_3:-43053090 Msa0812730:CDS
ATGAGAGGAAGAGGGTATGT+TGG 0.522518 5_3:+43050767 None:intergenic
AAATGTCAATGACCCTATGA+TGG 0.523078 5_3:-43053040 Msa0812730:CDS
TGGCCACATAAACTCATGGT+TGG 0.526915 5_3:+43052936 None:intergenic
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 5_3:-43052478 Msa0812730:CDS
TGGTAAGAGGAGAAAATCAT+GGG 0.540696 5_3:-43053098 Msa0812730:CDS
ATAAGAATCTATCCATCATA+GGG 0.549024 5_3:+43053028 None:intergenic
AGGAAATTATTCATAGAGGT+AGG 0.550489 5_3:+43050543 None:intergenic
TGGTGAAAACACCAACATTG+TGG 0.554704 5_3:-43052806 Msa0812730:CDS
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 5_3:-43052473 Msa0812730:CDS
AAGAATGAAACTAATTTCAA+GGG 0.567984 5_3:-43050858 Msa0812730:CDS
AGAGGTAAAGATCATAGGGA+AGG 0.571305 5_3:+43050523 None:intergenic
GGGAAGGAAATTATTCATAG+AGG 0.585879 5_3:+43050539 None:intergenic
AGTGTTGCATGAGAGGAAGA+GGG 0.587639 5_3:+43050759 None:intergenic
TATTTGGCCACATAAACTCA+TGG 0.590477 5_3:+43052932 None:intergenic
ACTTCCGAGGTCTTGATCAA+AGG 0.601817 5_3:-43052763 Msa0812730:CDS
GGTTGGAACCATAAGAGTAA+GGG 0.602635 5_3:+43052953 None:intergenic
AGTGGACAAACGAAGAAGAC+AGG 0.603153 5_3:-43052738 Msa0812730:intron
TCTTTGCTATCTCAGCCCAA+CGG 0.628371 5_3:+43050964 None:intergenic
TCTTAGCAAATGAAGAGGCG+TGG 0.633336 5_3:-43052879 Msa0812730:CDS
CTGTCCTTTGATCAAGACCT+CGG 0.642128 5_3:+43052759 None:intergenic
GCAAGCAGTGTAGAGAGCGA+TGG 0.650454 5_3:-43052451 Msa0812730:CDS
AAAACACCAACATTGTGGGA+AGG 0.651290 5_3:-43052801 Msa0812730:CDS
AATATCCTTAAGGCACAATG+TGG 0.654859 5_3:+43052837 None:intergenic
TGGTGTCTTAGCAAATGAAG+AGG 0.662823 5_3:-43052884 Msa0812730:CDS
ACATATTCAACAATTGAGAG+AGG 0.676560 5_3:+43050505 None:intergenic
AGGTCTTGATCAAAGGACAG+TGG 0.688341 5_3:-43052756 Msa0812730:CDS
ATGATGGATAGATTCTTATG+GGG 0.690697 5_3:-43053024 Msa0812730:CDS
AACTAAGAAAGAGACTTCCG+AGG 0.693403 5_3:-43052776 Msa0812730:CDS
GGTAAGAGGAGAAAATCATG+GGG 0.770045 5_3:-43053097 Msa0812730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATATCTAATTATAT+CGG - chr5_3:43050889-43050908 Msa0812730:CDS 10.0%
!! ATTATATGAAATCAAAAAAT+CGG + chr5_3:43051220-43051239 None:intergenic 10.0%
!! AATTCATATCTAATTATATC+GGG - chr5_3:43050890-43050909 Msa0812730:CDS 15.0%
!!! ATTTTGTAACTTCAAAAAAA+AGG - chr5_3:43050955-43050974 Msa0812730:CDS 15.0%
!!! TCATAGTTCTATATAAAAAA+TGG + chr5_3:43051001-43051020 None:intergenic 15.0%
!!! TTATTTGTTATGATGATTAA+AGG - chr5_3:43051052-43051071 Msa0812730:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr5_3:43051817-43051836 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr5_3:43051725-43051744 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr5_3:43051625-43051644 Msa0812730:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr5_3:43051817-43051836 Msa0812730:intron 15.0%
!!! ATTTAGATTCATATTTTTCA+AGG - chr5_3:43051951-43051970 Msa0812730:intron 15.0%
!!! ATTTTGTGCTAAATTAATAA+TGG + chr5_3:43052169-43052188 None:intergenic 15.0%
!! AGTATCATTTATATATCAAA+GGG + chr5_3:43052219-43052238 None:intergenic 15.0%
!! AAGTATCATTTATATATCAA+AGG + chr5_3:43052220-43052239 None:intergenic 15.0%
!!! TGAAAATATGTTGTTTATTT+TGG + chr5_3:43052344-43052363 None:intergenic 15.0%
!!! CCTTAAAAATGTTTAAAATT+TGG + chr5_3:43052436-43052455 None:intergenic 15.0%
!!! CCAAATTTTAAACATTTTTA+AGG - chr5_3:43052433-43052452 Msa0812730:CDS 15.0%
!!! ACATGCATTTTTATATATTT+AGG - chr5_3:43052476-43052495 Msa0812730:CDS 15.0%
!!! CATGCATTTTTATATATTTA+GGG - chr5_3:43052477-43052496 Msa0812730:CDS 15.0%
!! CGATTAAAAAAGAATATAAG+AGG + chr5_3:43050924-43050943 None:intergenic 20.0%
!! ATATATCTAACCTTAATATC+AGG + chr5_3:43051192-43051211 None:intergenic 20.0%
!!! TGGATTTCTATTTAATTTCA+AGG - chr5_3:43051328-43051347 Msa0812730:intron 20.0%
!!! GGATTTCTATTTAATTTCAA+GGG - chr5_3:43051329-43051348 Msa0812730:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr5_3:43051660-43051679 Msa0812730:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr5_3:43051754-43051773 Msa0812730:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr5_3:43051755-43051774 Msa0812730:intron 20.0%
!! AAGGCAAAAAAACAAAATTA+GGG - chr5_3:43051788-43051807 Msa0812730:intron 20.0%
!! TAATCTCATAGTTGAAATTA+GGG + chr5_3:43051891-43051910 None:intergenic 20.0%
!! ATAATCTCATAGTTGAAATT+AGG + chr5_3:43051892-43051911 None:intergenic 20.0%
!! ATGACATATTTCAAATGTTA+AGG + chr5_3:43052277-43052296 None:intergenic 20.0%
!!! ACTTTGAAATATGTTGTTTA+TGG + chr5_3:43052380-43052399 None:intergenic 20.0%
!! TAACTAACTTTCAAATTCAT+TGG - chr5_3:43052534-43052553 Msa0812730:intron 20.0%
!! AACTAACTTTCAAATTCATT+GGG - chr5_3:43052535-43052554 Msa0812730:intron 20.0%
!! TATTTATACAGAAAGATAGT+TGG - chr5_3:43052565-43052584 Msa0812730:intron 20.0%
!! AAAATGCCATAAAAAATCAT+TGG - chr5_3:43052679-43052698 Msa0812730:intron 20.0%
!! AAGAATGAAACTAATTTCAA+GGG - chr5_3:43052744-43052763 Msa0812730:CDS 20.0%
!!! GATATAGTTTTCAAGTATAT+AGG + chr5_3:43052784-43052803 None:intergenic 20.0%
! ATAAGAATCTATCCATCATA+GGG + chr5_3:43050577-43050596 None:intergenic 25.0%
!!! TATGATGGATAGATTCTTAT+GGG - chr5_3:43050577-43050596 Msa0812730:CDS 25.0%
!!! TATTTGCATTGTTTTGTTGA+TGG + chr5_3:43050625-43050644 None:intergenic 25.0%
! TTAAAGGAAACTGATAAAGT+TGG - chr5_3:43051068-43051087 Msa0812730:intron 25.0%
!! ATAAAGTTGGTTAAGCAATA+TGG - chr5_3:43051081-43051100 Msa0812730:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr5_3:43051465-43051484 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr5_3:43051466-43051485 None:intergenic 25.0%
! CAAGGCAAAAAAACAAAATT+AGG - chr5_3:43051787-43051806 Msa0812730:intron 25.0%
! TGAATCTAAATCTAGATCAT+CGG + chr5_3:43051942-43051961 None:intergenic 25.0%
! ATAAATCATCAATCTTGATG+TGG - chr5_3:43052136-43052155 Msa0812730:intron 25.0%
! TAAATCATCAATCTTGATGT+GGG - chr5_3:43052137-43052156 Msa0812730:intron 25.0%
!! TGAAATATGTCATTTGTGAT+TGG - chr5_3:43052284-43052303 Msa0812730:intron 25.0%
! GAAGAATGAAACTAATTTCA+AGG - chr5_3:43052743-43052762 Msa0812730:CDS 25.0%
!!! TTTTCAAGTATATAGGACTT+AGG + chr5_3:43052777-43052796 None:intergenic 25.0%
!! TTGATTTTCTTCAAGGTTTA+AGG + chr5_3:43052871-43052890 None:intergenic 25.0%
!!! GATTTGATTGATTTTCTTCA+AGG + chr5_3:43052878-43052897 None:intergenic 25.0%
! GAAGGTAATTCATTGAAAAA+AGG + chr5_3:43052900-43052919 None:intergenic 25.0%
! TTGTATGAAGTGTAATTCAT+TGG + chr5_3:43052934-43052953 None:intergenic 25.0%
!! CTTCATACAACAAATTTTGT+TGG - chr5_3:43052944-43052963 Msa0812730:CDS 25.0%
CATAAGAATCTATCCATCAT+AGG + chr5_3:43050578-43050597 None:intergenic 30.0%
!! CTATGATGGATAGATTCTTA+TGG - chr5_3:43050576-43050595 Msa0812730:CDS 30.0%
!! ATGATGGATAGATTCTTATG+GGG - chr5_3:43050578-43050597 Msa0812730:CDS 30.0%
!!! CATTGTTTTGTTGATGGTTA+GGG + chr5_3:43050619-43050638 None:intergenic 30.0%
AATATGTTCCCTTACTCTTA+TGG - chr5_3:43050641-43050660 Msa0812730:CDS 30.0%
AAGCTTGATTCTTGAGTATT+TGG + chr5_3:43050689-43050708 None:intergenic 30.0%
CATAACCTTGAATATCCTTA+AGG + chr5_3:43050778-43050797 None:intergenic 30.0%
CTTAAGGATATTCAAGGTTA+TGG - chr5_3:43050776-43050795 Msa0812730:CDS 30.0%
TTCTACATAGTTGCATGTAA+TGG - chr5_3:43051308-43051327 Msa0812730:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr5_3:43051848-43051867 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr5_3:43051847-43051866 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr5_3:43051832-43051851 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr5_3:43051528-43051547 Msa0812730:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr5_3:43051832-43051851 Msa0812730:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr5_3:43051847-43051866 Msa0812730:intron 30.0%
ATCTAGATCATCGGATAAAT+AGG + chr5_3:43051933-43051952 None:intergenic 30.0%
TATCAATCAACCTATGTATG+CGG + chr5_3:43052012-43052031 None:intergenic 30.0%
!!! GGCATTCCAATGATTTTTTA+TGG + chr5_3:43052688-43052707 None:intergenic 30.0%
! TGAATTTTGTCTCCTTTTAG+TGG + chr5_3:43052709-43052728 None:intergenic 30.0%
!!! GTTGGTAATTTTTGTAGTGA+TGG + chr5_3:43052820-43052839 None:intergenic 30.0%
TCATTGGAAAAAGATTCAGA+AGG + chr5_3:43052918-43052937 None:intergenic 30.0%
CCAAATGCATGTTGTAATTT+GGG + chr5_3:43053034-43053053 None:intergenic 30.0%
TCCAAATGCATGTTGTAATT+TGG + chr5_3:43053035-43053054 None:intergenic 30.0%
AGGAAATTATTCATAGAGGT+AGG + chr5_3:43053062-43053081 None:intergenic 30.0%
ACATATTCAACAATTGAGAG+AGG + chr5_3:43053100-43053119 None:intergenic 30.0%
ATGGTAAGAGGAGAAAATCA+TGG - chr5_3:43050503-43050522 Msa0812730:CDS 35.0%
TGGTAAGAGGAGAAAATCAT+GGG - chr5_3:43050504-43050523 Msa0812730:CDS 35.0%
AAATGTCAATGACCCTATGA+TGG - chr5_3:43050562-43050581 Msa0812730:CDS 35.0%
!!! GCATTGTTTTGTTGATGGTT+AGG + chr5_3:43050620-43050639 None:intergenic 35.0%
TATTTGGCCACATAAACTCA+TGG + chr5_3:43050673-43050692 None:intergenic 35.0%
!! GAATCAAGCTTTGTTGTTGA+TGG - chr5_3:43050698-43050717 Msa0812730:CDS 35.0%
AATATCCTTAAGGCACAATG+TGG + chr5_3:43050768-43050787 None:intergenic 35.0%
TTGTGCCTTAAGGATATTCA+AGG - chr5_3:43050770-43050789 Msa0812730:CDS 35.0%
AGCAATATGGCGAAAGAAAA+TGG - chr5_3:43051094-43051113 Msa0812730:intron 35.0%
GCAATATGGCGAAAGAAAAT+GGG - chr5_3:43051095-43051114 Msa0812730:intron 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr5_3:43051120-43051139 Msa0812730:intron 35.0%
TCATTTGCGTCCTGATATTA+AGG - chr5_3:43051179-43051198 Msa0812730:intron 35.0%
! TGTGCTACTATATCATCCTA+GGG + chr5_3:43051274-43051293 None:intergenic 35.0%
! TTGTGCTACTATATCATCCT+AGG + chr5_3:43051275-43051294 None:intergenic 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG - chr5_3:43051663-43051682 Msa0812730:intron 35.0%
! TTCAAGGATCTGTGTCTTTT+AGG - chr5_3:43051967-43051986 Msa0812730:intron 35.0%
! TCAAGGATCTGTGTCTTTTA+GGG - chr5_3:43051968-43051987 Msa0812730:intron 35.0%
!! TGTTTGTTATCCGCATACAT+AGG - chr5_3:43051999-43052018 Msa0812730:intron 35.0%
ATCATTGGAATGCCACTAAA+AGG - chr5_3:43052694-43052713 Msa0812730:intron 35.0%
! GGTAATTTTTGTAGTGATGG+AGG + chr5_3:43052817-43052836 None:intergenic 35.0%
CCCAAATTACAACATGCATT+TGG - chr5_3:43053031-43053050 Msa0812730:CDS 35.0%
GGGAAGGAAATTATTCATAG+AGG + chr5_3:43053066-43053085 None:intergenic 35.0%
TGAGAGAGGTAAAGATCATA+GGG + chr5_3:43053086-43053105 None:intergenic 35.0%
TTGAGAGAGGTAAAGATCAT+AGG + chr5_3:43053087-43053106 None:intergenic 35.0%
GGTAAGAGGAGAAAATCATG+GGG - chr5_3:43050505-43050524 Msa0812730:CDS 40.0%
GTCAATGGCGTTAAAGTCTT+TGG - chr5_3:43050527-43050546 Msa0812730:CDS 40.0%
GGTTGGAACCATAAGAGTAA+GGG + chr5_3:43050652-43050671 None:intergenic 40.0%
TGGTTGGAACCATAAGAGTA+AGG + chr5_3:43050653-43050672 None:intergenic 40.0%
GTTCCAACCATGAGTTTATG+TGG - chr5_3:43050663-43050682 Msa0812730:CDS 40.0%
TGGTGTCTTAGCAAATGAAG+AGG - chr5_3:43050718-43050737 Msa0812730:CDS 40.0%
TAAGGCACAATGTGGAAGTT+TGG + chr5_3:43050760-43050779 None:intergenic 40.0%
AACTTCCACATTGTGCCTTA+AGG - chr5_3:43050760-43050779 Msa0812730:CDS 40.0%
TGGTGAAAACACCAACATTG+TGG - chr5_3:43050796-43050815 Msa0812730:CDS 40.0%
GGTGAAAACACCAACATTGT+GGG - chr5_3:43050797-43050816 Msa0812730:CDS 40.0%
AAAACACCAACATTGTGGGA+AGG - chr5_3:43050801-43050820 Msa0812730:CDS 40.0%
AGTTATCCTTCCCACAATGT+TGG + chr5_3:43050810-43050829 None:intergenic 40.0%
AACTAAGAAAGAGACTTCCG+AGG - chr5_3:43050826-43050845 Msa0812730:CDS 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr5_3:43051124-43051143 Msa0812730:intron 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr5_3:43051125-43051144 Msa0812730:intron 40.0%
TTGTGCTTGAATTTGACCCT+AGG - chr5_3:43051255-43051274 Msa0812730:intron 40.0%
TGAGTAGGGACTAATACTCA+AGG - chr5_3:43051769-43051788 Msa0812730:intron 40.0%
GTAGCTACACATGCCAAAAT+TGG - chr5_3:43052612-43052631 Msa0812730:intron 40.0%
ATGCCAAAATTGGAAACCGT+TGG - chr5_3:43052622-43052641 Msa0812730:intron 40.0%
TGCCAAAATTGGAAACCGTT+GGG - chr5_3:43052623-43052642 Msa0812730:intron 40.0%
GAGATAGCAAAGAAGATTCC+AGG - chr5_3:43052648-43052667 Msa0812730:intron 40.0%
! ATGGCATTTTCAGTTCTTCC+TGG + chr5_3:43052669-43052688 None:intergenic 40.0%
!! TTTTGTAGTGATGGAGGTGT+TGG + chr5_3:43052811-43052830 None:intergenic 40.0%
!! TAAGGAAAGTGTTGCATGAG+AGG + chr5_3:43052853-43052872 None:intergenic 40.0%
GCATGTTGTAATTTGGGCAT+TGG + chr5_3:43053028-43053047 None:intergenic 40.0%
AGAGGTAAAGATCATAGGGA+AGG + chr5_3:43053082-43053101 None:intergenic 40.0%
GGAGAAAATCATGGGGTCAA+TGG - chr5_3:43050512-43050531 Msa0812730:CDS 45.0%
TGGCCACATAAACTCATGGT+TGG + chr5_3:43050669-43050688 None:intergenic 45.0%
TCTTAGCAAATGAAGAGGCG+TGG - chr5_3:43050723-43050742 Msa0812730:CDS 45.0%
ACTTCCGAGGTCTTGATCAA+AGG - chr5_3:43050839-43050858 Msa0812730:CDS 45.0%
CTGTCCTTTGATCAAGACCT+CGG + chr5_3:43050846-43050865 None:intergenic 45.0%
AGGTCTTGATCAAAGGACAG+TGG - chr5_3:43050846-43050865 Msa0812730:CDS 45.0%
AGTGGACAAACGAAGAAGAC+AGG - chr5_3:43050864-43050883 Msa0812730:CDS 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr5_3:43051129-43051148 Msa0812730:intron 45.0%
! AGCCCAACGGTTTCCAATTT+TGG + chr5_3:43052628-43052647 None:intergenic 45.0%
! TCTTTGCTATCTCAGCCCAA+CGG + chr5_3:43052641-43052660 None:intergenic 45.0%
! ATGAGAGGAAGAGGGTATGT+TGG + chr5_3:43052838-43052857 None:intergenic 45.0%
AGTGTTGCATGAGAGGAAGA+GGG + chr5_3:43052846-43052865 None:intergenic 45.0%
! AAGTGTTGCATGAGAGGAAG+AGG + chr5_3:43052847-43052866 None:intergenic 45.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr5_3:43051432-43051451 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr5_3:43051433-43051452 None:intergenic 5.0%
GCAAGCAGTGTAGAGAGCGA+TGG - chr5_3:43051151-43051170 Msa0812730:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43050503 43053121 43050503 ID=Msa0812730;Name=Msa0812730
chr5_3 mRNA 43050503 43053121 43050503 ID=Msa0812730-mRNA-1;Parent=Msa0812730;Name=Msa0812730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|351
chr5_3 exon 43052739 43053121 43052739 ID=Msa0812730-mRNA-1:exon:13225;Parent=Msa0812730-mRNA-1
chr5_3 exon 43052424 43052550 43052424 ID=Msa0812730-mRNA-1:exon:13224;Parent=Msa0812730-mRNA-1
chr5_3 exon 43050503 43051048 43050503 ID=Msa0812730-mRNA-1:exon:13223;Parent=Msa0812730-mRNA-1
chr5_3 CDS 43052739 43053121 43052739 ID=Msa0812730-mRNA-1:cds;Parent=Msa0812730-mRNA-1
chr5_3 CDS 43052424 43052550 43052424 ID=Msa0812730-mRNA-1:cds;Parent=Msa0812730-mRNA-1
chr5_3 CDS 43050503 43051048 43050503 ID=Msa0812730-mRNA-1:cds;Parent=Msa0812730-mRNA-1
Gene Sequence

>Msa0812730

ATGGTAAGAGGAGAAAATCATGGGGTCAATGGCGTTAAAGTCTTTGGCAATGAAAATATAAATGTCAATGACCCTATGATGGATAGATTCTTATGGGGACAAATGATTCACTACCCTAACCATCAACAAAACAATGCAAATATGTTCCCTTACTCTTATGGTTCCAACCATGAGTTTATGTGGCCAAATACTCAAGAATCAAGCTTTGTTGTTGATGGTGTCTTAGCAAATGAAGAGGCGTGGACTAACTTCAACCAAACTTCCACATTGTGCCTTAAGGATATTCAAGGTTATGGTGAAAACACCAACATTGTGGGAAGGATAACTAAGAAAGAGACTTCCGAGGTCTTGATCAAAGGACAGTGGACAAACGAAGAAGACAGGAAACTGATAAAGTTGGTTAAGCAATATGGCGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAAGATATTAGTAGCTACACATGCCAAAATTGGAAACCGTTGGGCTGAGATAGCAAAGAAGATTCCAGGAAGAACTGAAAATGCCATAAAAAATCATTGGAATGCCACTAAAAGGAGACAAAATTCAAGAAGAAAGAACAAGAAGAATGAAACTAATTTCAAGGGATCAAAACCTAAGTCCTATATACTTGAAAACTATATCAAAACCAACACCTCCATCACTACAAAAATTACCAACATACCCTCTTCCTCTCATGCAACACTTTCCTTAAACCTTGAAGAAAATCAATCAAATCCTTTTTTCAATGAATTACCTTCTGAATCTTTTTCCAATGAATTACACTTCATACAACAAATTTTGTTGGATGATAATAATCAAAATGTTGTTGATGATGTGAATGAGAGTGAGCTTGTTCATTCAATCCAATGCCCAAATTACAACATGCATTTGGATACTCCTACCTCTATGAATAATTTCCTTCCCTATGATCTTTACCTCTCTCAATTGTTGAATATGTAG
Protein sequence

>Msa0812730

MVRGENHGVNGVKVFGNENINVNDPMMDRFLWGQMIHYPNHQQNNANMFPYSYGSNHEFMWPNTQESSFVVDGVLANEEAWTNFNQTSTLCLKDIQGYGENTNIVGRITKKETSEVLIKGQWTNEEDRKLIKLVKQYGERKWAQIAEKLEGRVGKQCRERWHNHLRPDIKKDSWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETNFKGSKPKSYILENYIKTNTSITTKITNIPSSSHATLSLNLEENQSNPFFNELPSESFSNELHFIQQILLDDNNQNVVDDVNESELVHSIQCPNYNMHLDTPTSMNNFLPYDLYLSQLLNM*