AlfalfaGEDB | Msa0813410

M. sativa cultivar zhongmu-4 / Msa0813410

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813410	GAU33477.1	50.000	610	166	14	1	516	1	565	1.59e-174	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813410	sp\|Q9SZL8\|FRS5_ARATH	33.721	172	108	3	54	220	77	247	5.41e-18	91.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813410	A0A2Z6NTS8	50.000	610	166	14	1	516	1	565	7.57e-175	514

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TFs/TRs:

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Gene ID	Type	Classification
Msa0813410	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813410	MtrunA17_Chr2g0287651	39.252	214	116	4	13	222	47	250	8.59e-41	157
Msa0813410	MtrunA17_Chr1g0203051	29.688	192	129	2	43	231	72	260	1.16e-23	105
Msa0813410	MtrunA17_Chr5g0448761	34.756	164	102	2	52	210	62	225	3.40e-20	94.4
Msa0813410	MtrunA17_Chr2g0290391	28.283	198	132	5	27	217	29	223	1.61e-17	85.9
Msa0813410	MtrunA17_Chr7g0258861	32.558	172	104	4	47	210	4	171	1.32e-15	77.8
Msa0813410	MtrunA17_Chr1g0202341	33.143	175	107	5	51	220	52	221	2.73e-15	79.0
Msa0813410	MtrunA17_Chr3g0082121	31.373	153	103	2	54	204	47	199	1.49e-14	76.6
Msa0813410	MtrunA17_Chr1g0171741	31.452	124	77	2	51	169	134	254	3.39e-14	72.8
Msa0813410	MtrunA17_Chr2g0276841	32.515	163	99	6	56	209	76	236	5.07e-14	75.1
Msa0813410	MtrunA17_Chr6g0458391	36.283	113	70	2	54	165	95	206	8.84e-14	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813410	AT4G38180.1	33.721	172	108	3	54	220	77	247	5.50e-19	91.3
Msa0813410	AT5G28530.1	29.814	161	108	3	56	211	61	221	1.46e-15	80.1
Msa0813410	AT5G28530.5	29.814	161	108	3	56	211	61	221	1.48e-15	80.1
Msa0813410	AT5G28530.3	29.814	161	108	3	56	211	61	221	1.49e-15	80.1
Msa0813410	AT5G28530.2	29.814	161	108	3	56	211	61	221	1.49e-15	80.1
Msa0813410	AT5G28530.4	29.814	161	108	3	56	211	61	221	1.59e-15	80.1
Msa0813410	AT1G10240.2	31.677	161	103	5	56	209	54	214	5.01e-14	75.5
Msa0813410	AT1G10240.1	31.677	161	103	5	56	209	54	214	5.01e-14	75.5
Msa0813410	AT3G07500.1	32.530	166	96	6	54	213	37	192	8.95e-13	68.2

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Find 115 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTATGCCCGTTTCCA+TGG	0.434466	5_3:-44181528	Msa0813410:CDS
AAAGGAGGACATGAAAATCT+TGG	0.412933	5_3:-44181147	Msa0813410:CDS
AAATAATGATATAAAAGCTA+TGG	0.514775	5_3:-44181586	Msa0813410:CDS
AAATGGTCATGTTTCGCCGA+TGG	0.552575	5_3:-44176250	Msa0813410:CDS
AAATGTCAATGGCAACAATA+AGG	0.413929	5_3:-44176108	Msa0813410:CDS
AACAACATTCCTTTGTATCC+TGG	0.428695	5_3:-44175215	Msa0813410:CDS
AACGATGGTGTTGGGTATGT+TGG	0.494515	5_3:-44175338	Msa0813410:CDS
AACTTCTTCACAATTCCCTC+CGG	0.506498	5_3:-44175261	Msa0813410:CDS
AAGATAAATGTACGTTGTGA+GGG	0.562827	5_3:-44176131	Msa0813410:CDS
AAGCGTATGCCCGTTTCCAT+GGG	0.525074	5_3:-44181527	Msa0813410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGAATTCAGTAGTGATAA+TGG	-	chr5_3:44175105-44175124	Msa0813410:intron	30.0%
CGATTACTTTGCAATAAAGA+GGG	-	chr5_3:44175333-44175352	Msa0813410:CDS	30.0%
ATCAAATGAACAAGATTTGG+AGG	+	chr5_3:44175510-44175529	None:intergenic	30.0%
TAAGAAACCTAGTATATGAC+AGG	+	chr5_3:44175604-44175623	None:intergenic	30.0%
TATAACTACACTGATCATCA+AGG	-	chr5_3:44175675-44175694	Msa0813410:CDS	30.0%
TAGGATACTATAGTCGTTAT+GGG	+	chr5_3:44175958-44175977	None:intergenic	30.0%
ATAGGATACTATAGTCGTTA+TGG	+	chr5_3:44175959-44175978	None:intergenic	30.0%
TAACGACTATAGTATCCTAT+AGG	-	chr5_3:44175959-44175978	Msa0813410:CDS	30.0%
GGATTTACTAAGTGAAGAAT+TGG	-	chr5_3:44176051-44176070	Msa0813410:CDS	30.0%
TTTACTAAGTGAAGAATTGG+AGG	-	chr5_3:44176054-44176073	Msa0813410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	44175054	44181748	44175054	ID=Msa0813410;Name=Msa0813410
chr5_3	mRNA	44175054	44181748	44175054	ID=Msa0813410-mRNA-1;Parent=Msa0813410;Name=Msa0813410-mRNA-1;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|0.16\|1\|1\|6\|0\|520
chr5_3	exon	44181088	44181748	44181088	ID=Msa0813410-mRNA-1:exon:13648;Parent=Msa0813410-mRNA-1
chr5_3	exon	44176050	44176290	44176050	ID=Msa0813410-mRNA-1:exon:13647;Parent=Msa0813410-mRNA-1
chr5_3	exon	44175797	44175989	44175797	ID=Msa0813410-mRNA-1:exon:13646;Parent=Msa0813410-mRNA-1
chr5_3	exon	44175492	44175710	44175492	ID=Msa0813410-mRNA-1:exon:13645;Parent=Msa0813410-mRNA-1
chr5_3	exon	44175205	44175390	44175205	ID=Msa0813410-mRNA-1:exon:13644;Parent=Msa0813410-mRNA-1
chr5_3	exon	44175054	44175116	44175054	ID=Msa0813410-mRNA-1:exon:13643;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44181088	44181748	44181088	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44176050	44176290	44176050	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44175797	44175989	44175797	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44175492	44175710	44175492	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44175205	44175390	44175205	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1
chr5_3	CDS	44175054	44175116	44175054	ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1

Gene Sequence

>Msa0813410

ATGTCAGCCTATAGTGAAGCAGCTCAACATCTCGATAATGATACTGTAGAGGTAGAATTCAGTAGTGATAATGGTTTTGGTAATGATGGAGATAGAAAGACAGACAATTGCAATGGTCAGAAAAGTTTAAGTGAAATTACAAATAATGATATAAAAGCTATGGAGTTTAGCACAGAGGAAGAAGCTATACAATTTTACAAAGCGTATGCCCGTTTCCATGGGTTTGTCGTAAGGAAGGATGATGTGGTAAAGGATCACGAGGGAAAAATTGTTGCGCGGCGATTACTTTGCAATAAAGAGGGAAAGAGTGAAACTAAAAACAAGAAGAATGAAGATAGTAATAGGCAAACCATGCGAACTGGATGTCTTGCTAGACTTCGAGTAGCCTATGATTTCATTCAGAAGATTTGGAAAGTTACTAATTTTGAGCCCAATCACAACCATGAACTAAGTCCTCCAAATCTTGTTCATTTGATTCTGAATTATAGGAAATTGAGTGAATCGGATAAACAGATTGTTAGTGGTTTGCATTCTCAAGGTGTAAGAACCTGTCATATACTAGGTTTCTTAATGGGCCAAAAAGGAGGACATGAAAATCTTGGATTTATAAAAAAGGATCTATATAACTACACTGATCATCAAGGAAGGGTTAGAATTGAAGAAGGTCATAATGAGGAAAAAATGGTCATGTTTCGCCGATGGGCACTTACCGCTGCATTCAATAGGCTTTGTGAGGTGTCTTGTAACAATGCCATTGATTATGAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATAAATGTACGTTGTGAGGGAAATGTCAATGGCAACAATAAGGTCAATAAATCTGTTGTTGGAGATCCAGATAATGCTAAACCCAAAGGAGCCCCTAAAATGCATGGTCACACAATCCGAAAGTGTCCAATACTTGCTGGAATTGATGTCACATTTGTAGATGAGGAGGAGGAGGAGAAGGATAAAGAAGAATATGAGAAGGAATACGAGGAGGACGAAGATGCAGAGGAGGAGGTGGAGGAGGAGGAAGATGATACACATGTTGAATCTGAATATGAATCAAATCGTTTAAATGTGTCTATAAGCCACGACATGAATGACGAAACCCATTCTATGTCAGTACCAAATGGTAGACATGGTGTTGATAATATCTTTGGTATTAAACGTAAGAGAGATTGTGATAAAGCCGATTTTTCAACACAAGACTCTGCGGCGAATACCAAAACAACAAATATAGACATTAGAAAGACCGATGCTTCTGTGACTCCAAATATTACAGTTAATATTGAAAATAATGGTATGCCACATGGATTTGCAAGATGGAACGATGGTGTTGGGTATGTTGGTAACTATTTTCCCGCTTTTCCTGTGTACGGTGGGATTCCAAATGTGGGTGGATTAACTTCTTCACAATTCCCTCCGGCAGACATCCTTCCATCACATTATAACAACATTCCTTTGTATCCTGGAACAAATAGTTTTATGAGCGTGTTGAAGGACATGGAGAGTTCAGCAAAACATCAAAATAGATATCAAAATTAA

Protein sequence

>Msa0813410

MSAYSEAAQHLDNDTVEVEFSSDNGFGNDGDRKTDNCNGQKSLSEITNNDIKAMEFSTEEEAIQFYKAYARFHGFVVRKDDVVKDHEGKIVARRLLCNKEGKSETKNKKNEDSNRQTMRTGCLARLRVAYDFIQKIWKVTNFEPNHNHELSPPNLVHLILNYRKLSESDKQIVSGLHSQGVRTCHILGFLMGQKGGHENLGFIKKDLYNYTDHQGRVRIEEGHNEEKMVMFRRWALTAAFNRLCEVSCNNAIDYEEALEGINSLCDKINVRCEGNVNGNNKVNKSVVGDPDNAKPKGAPKMHGHTIRKCPILAGIDVTFVDEEEEEKDKEEYEKEYEEDEDAEEEVEEEEDDTHVESEYESNRLNVSISHDMNDETHSMSVPNGRHGVDNIFGIKRKRDCDKADFSTQDSAANTKTTNIDIRKTDASVTPNITVNIENNGMPHGFARWNDGVGYVGNYFPAFPVYGGIPNVGGLTSSQFPPADILPSHYNNIPLYPGTNSFMSVLKDMESSAKHQNRYQN*