Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813410 | GAU33477.1 | 50.000 | 610 | 166 | 14 | 1 | 516 | 1 | 565 | 1.59e-174 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813410 | sp|Q9SZL8|FRS5_ARATH | 33.721 | 172 | 108 | 3 | 54 | 220 | 77 | 247 | 5.41e-18 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813410 | A0A2Z6NTS8 | 50.000 | 610 | 166 | 14 | 1 | 516 | 1 | 565 | 7.57e-175 | 514 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0813410 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813410 | MtrunA17_Chr2g0287651 | 39.252 | 214 | 116 | 4 | 13 | 222 | 47 | 250 | 8.59e-41 | 157 |
| Msa0813410 | MtrunA17_Chr1g0203051 | 29.688 | 192 | 129 | 2 | 43 | 231 | 72 | 260 | 1.16e-23 | 105 |
| Msa0813410 | MtrunA17_Chr5g0448761 | 34.756 | 164 | 102 | 2 | 52 | 210 | 62 | 225 | 3.40e-20 | 94.4 |
| Msa0813410 | MtrunA17_Chr2g0290391 | 28.283 | 198 | 132 | 5 | 27 | 217 | 29 | 223 | 1.61e-17 | 85.9 |
| Msa0813410 | MtrunA17_Chr7g0258861 | 32.558 | 172 | 104 | 4 | 47 | 210 | 4 | 171 | 1.32e-15 | 77.8 |
| Msa0813410 | MtrunA17_Chr1g0202341 | 33.143 | 175 | 107 | 5 | 51 | 220 | 52 | 221 | 2.73e-15 | 79.0 |
| Msa0813410 | MtrunA17_Chr3g0082121 | 31.373 | 153 | 103 | 2 | 54 | 204 | 47 | 199 | 1.49e-14 | 76.6 |
| Msa0813410 | MtrunA17_Chr1g0171741 | 31.452 | 124 | 77 | 2 | 51 | 169 | 134 | 254 | 3.39e-14 | 72.8 |
| Msa0813410 | MtrunA17_Chr2g0276841 | 32.515 | 163 | 99 | 6 | 56 | 209 | 76 | 236 | 5.07e-14 | 75.1 |
| Msa0813410 | MtrunA17_Chr6g0458391 | 36.283 | 113 | 70 | 2 | 54 | 165 | 95 | 206 | 8.84e-14 | 74.3 |
| Msa0813410 | MtrunA17_Chr6g0458391 | 36.154 | 130 | 75 | 5 | 54 | 177 | 229 | 356 | 7.22e-13 | 71.2 |
| Msa0813410 | MtrunA17_Chr2g0294841 | 33.113 | 151 | 88 | 5 | 56 | 195 | 51 | 199 | 4.55e-12 | 68.9 |
| Msa0813410 | MtrunA17_Chr2g0324011 | 29.560 | 159 | 108 | 2 | 54 | 210 | 14 | 170 | 5.58e-12 | 68.2 |
| Msa0813410 | MtrunA17_Chr8g0363841 | 27.011 | 174 | 123 | 4 | 58 | 229 | 25 | 196 | 1.28e-11 | 67.4 |
| Msa0813410 | MtrunA17_Chr2g0329421 | 34.343 | 99 | 63 | 2 | 55 | 152 | 32 | 129 | 5.59e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813410 | AT4G38180.1 | 33.721 | 172 | 108 | 3 | 54 | 220 | 77 | 247 | 5.50e-19 | 91.3 |
| Msa0813410 | AT5G28530.1 | 29.814 | 161 | 108 | 3 | 56 | 211 | 61 | 221 | 1.46e-15 | 80.1 |
| Msa0813410 | AT5G28530.5 | 29.814 | 161 | 108 | 3 | 56 | 211 | 61 | 221 | 1.48e-15 | 80.1 |
| Msa0813410 | AT5G28530.3 | 29.814 | 161 | 108 | 3 | 56 | 211 | 61 | 221 | 1.49e-15 | 80.1 |
| Msa0813410 | AT5G28530.2 | 29.814 | 161 | 108 | 3 | 56 | 211 | 61 | 221 | 1.49e-15 | 80.1 |
| Msa0813410 | AT5G28530.4 | 29.814 | 161 | 108 | 3 | 56 | 211 | 61 | 221 | 1.59e-15 | 80.1 |
| Msa0813410 | AT1G10240.2 | 31.677 | 161 | 103 | 5 | 56 | 209 | 54 | 214 | 5.01e-14 | 75.5 |
| Msa0813410 | AT1G10240.1 | 31.677 | 161 | 103 | 5 | 56 | 209 | 54 | 214 | 5.01e-14 | 75.5 |
| Msa0813410 | AT3G07500.1 | 32.530 | 166 | 96 | 6 | 54 | 213 | 37 | 192 | 8.95e-13 | 68.2 |
Find 115 sgRNAs with CRISPR-Local
Find 474 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTAACTGTAATATT+TGG | 0.161773 | 5_3:+44175496 | None:intergenic |
| TTCATTTGATTCTGAATTAT+AGG | 0.174740 | 5_3:-44181260 | Msa0813410:CDS |
| CCTTTGGGTTTAGCATTATC+TGG | 0.190370 | 5_3:+44176062 | None:intergenic |
| ATGATTTCATTCAGAAGATT+TGG | 0.259205 | 5_3:-44181338 | Msa0813410:CDS |
| AATGTCTATATTTGTTGTTT+TGG | 0.267598 | 5_3:+44175543 | None:intergenic |
| AGAATCAAATGAACAAGATT+TGG | 0.276010 | 5_3:+44181270 | None:intergenic |
| TCATATACTAGGTTTCTTAA+TGG | 0.276146 | 5_3:-44181175 | Msa0813410:CDS |
| TTCAGTAGTGATAATGGTTT+TGG | 0.283086 | 5_3:-44181669 | Msa0813410:CDS |
| CATGGTGTTGATAATATCTT+TGG | 0.292837 | 5_3:-44175628 | Msa0813410:CDS |
| AGAAGAATGAAGATAGTAAT+AGG | 0.327885 | 5_3:-44181404 | Msa0813410:CDS |
| CATATACTAGGTTTCTTAAT+GGG | 0.328869 | 5_3:-44181174 | Msa0813410:CDS |
| GGTTTCTTAATGGGCCAAAA+AGG | 0.332076 | 5_3:-44181165 | Msa0813410:CDS |
| GTAGAATTCAGTAGTGATAA+TGG | 0.335573 | 5_3:-44181675 | Msa0813410:CDS |
| AGAGGAGGAGGTGGAGGAGG+AGG | 0.354178 | 5_3:-44175844 | Msa0813410:CDS |
| TGCAGAGGAGGAGGTGGAGG+AGG | 0.357989 | 5_3:-44175847 | Msa0813410:CDS |
| ACTTAGTTCATGGTTGTGAT+TGG | 0.360489 | 5_3:+44181296 | None:intergenic |
| GAAGTTAATCCACCCACATT+TGG | 0.365859 | 5_3:+44175278 | None:intergenic |
| CAGCAAGTATTGGACACTTT+CGG | 0.372448 | 5_3:+44175952 | None:intergenic |
| CGAAAGTGTCCAATACTTGC+TGG | 0.373884 | 5_3:-44175951 | Msa0813410:CDS |
| CACTTACCGCTGCATTCAAT+AGG | 0.379313 | 5_3:-44176226 | Msa0813410:CDS |
| CTTAGTTCATGGTTGTGATT+GGG | 0.381070 | 5_3:+44181297 | None:intergenic |
| TAACAATGCCATTGATTATG+AGG | 0.400069 | 5_3:-44176186 | Msa0813410:CDS |
| CATTTGGTACTGACATAGAA+TGG | 0.405927 | 5_3:+44175656 | None:intergenic |
| AATCTTCTGAATGAAATCAT+AGG | 0.410758 | 5_3:+44181341 | None:intergenic |
| AAAGGAGGACATGAAAATCT+TGG | 0.412933 | 5_3:-44181147 | Msa0813410:CDS |
| AAATGTCAATGGCAACAATA+AGG | 0.413929 | 5_3:-44176108 | Msa0813410:CDS |
| GATTTGGAGGACTTAGTTCA+TGG | 0.422475 | 5_3:+44181286 | None:intergenic |
| AACAACATTCCTTTGTATCC+TGG | 0.428695 | 5_3:-44175215 | Msa0813410:CDS |
| TCGGATAAACAGATTGTTAG+TGG | 0.430560 | 5_3:-44181225 | Msa0813410:CDS |
| AAAGCGTATGCCCGTTTCCA+TGG | 0.434466 | 5_3:-44181528 | Msa0813410:CDS |
| TAACATACACTATTTGTTCC+AGG | 0.434470 | 5_3:+44175197 | None:intergenic |
| CAAGGAAGGGTTAGAATTGA+AGG | 0.441504 | 5_3:-44181087 | Msa0813410:intron |
| TACGACAAACCCATGGAAAC+GGG | 0.445677 | 5_3:+44181518 | None:intergenic |
| TCAACACCATGTCTACCATT+TGG | 0.448971 | 5_3:+44175640 | None:intergenic |
| CGAAGATGCAGAGGAGGAGG+TGG | 0.451530 | 5_3:-44175853 | Msa0813410:CDS |
| CATTGATTATGAGGAAGCTT+TGG | 0.458582 | 5_3:-44176177 | Msa0813410:CDS |
| AATAGGCAAACCATGCGAAC+TGG | 0.460478 | 5_3:-44181387 | Msa0813410:CDS |
| ACAGTTTATGAGCGTGTTGA+AGG | 0.461789 | 5_3:-44175098 | Msa0813410:intron |
| AGATGCAGAGGAGGAGGTGG+AGG | 0.465027 | 5_3:-44175850 | Msa0813410:CDS |
| AAGGTCAATAAATCTGTTGT+TGG | 0.472287 | 5_3:-44176089 | Msa0813410:CDS |
| TTACGACAAACCCATGGAAA+CGG | 0.472919 | 5_3:+44181517 | None:intergenic |
| ATGTTGAGCTGCTTCACTAT+AGG | 0.473922 | 5_3:+44181719 | None:intergenic |
| GTTAGTGGTTTGCATTCTCA+AGG | 0.476835 | 5_3:-44181210 | Msa0813410:CDS |
| GCGATTACTTTGCAATAAAG+AGG | 0.481547 | 5_3:-44181448 | Msa0813410:CDS |
| GTTTCCATGGGTTTGTCGTA+AGG | 0.482758 | 5_3:-44181515 | Msa0813410:CDS |
| ATTTGGTACTGACATAGAAT+GGG | 0.493491 | 5_3:+44175657 | None:intergenic |
| ACATCAATTCCAGCAAGTAT+TGG | 0.494203 | 5_3:+44175942 | None:intergenic |
| CAAAGCTTCCTCATAATCAA+TGG | 0.494233 | 5_3:+44176178 | None:intergenic |
| AACGATGGTGTTGGGTATGT+TGG | 0.494515 | 5_3:-44175338 | Msa0813410:CDS |
| GGACGAAGATGCAGAGGAGG+AGG | 0.499554 | 5_3:-44175856 | Msa0813410:CDS |
| CAAGATGGAACGATGGTGTT+GGG | 0.503043 | 5_3:-44175346 | Msa0813410:CDS |
| TTATAGGAAATTGAGTGAAT+CGG | 0.503221 | 5_3:-44181244 | Msa0813410:CDS |
| AACTTCTTCACAATTCCCTC+CGG | 0.506498 | 5_3:-44175261 | Msa0813410:CDS |
| ATCAAATGAACAAGATTTGG+AGG | 0.513900 | 5_3:+44181273 | None:intergenic |
| AAATAATGATATAAAAGCTA+TGG | 0.514775 | 5_3:-44181586 | Msa0813410:CDS |
| AAGGAAGGATGATGTGGTAA+AGG | 0.518755 | 5_3:-44181496 | Msa0813410:CDS |
| ATTTGTAGATGAGGAGGAGG+AGG | 0.521037 | 5_3:-44175916 | Msa0813410:CDS |
| CCATGGGTTTGTCGTAAGGA+AGG | 0.524385 | 5_3:-44181511 | Msa0813410:CDS |
| AAGCGTATGCCCGTTTCCAT+GGG | 0.525074 | 5_3:-44181527 | Msa0813410:CDS |
| AATGGTCATGTTTCGCCGAT+GGG | 0.527578 | 5_3:-44176249 | Msa0813410:CDS |
| TGCCACATGGATTTGCAAGA+TGG | 0.527779 | 5_3:-44175361 | Msa0813410:CDS |
| GTAAGAACCTGTCATATACT+AGG | 0.532163 | 5_3:-44181186 | Msa0813410:CDS |
| GATTATGAGGAAGCTTTGGA+AGG | 0.532969 | 5_3:-44176173 | Msa0813410:CDS |
| GGGTTTCGTCATTCATGTCG+TGG | 0.540102 | 5_3:+44175677 | None:intergenic |
| CCACCGTACACAGGAAAAGC+GGG | 0.548539 | 5_3:+44175305 | None:intergenic |
| TAAGAAACCTAGTATATGAC+AGG | 0.549198 | 5_3:+44181179 | None:intergenic |
| CATTCTATGTCAGTACCAAA+TGG | 0.549713 | 5_3:-44175655 | Msa0813410:CDS |
| GGATAAAGAAGAATATGAGA+AGG | 0.551144 | 5_3:-44175889 | Msa0813410:CDS |
| CACATTTGTAGATGAGGAGG+AGG | 0.551676 | 5_3:-44175919 | Msa0813410:CDS |
| AAATGGTCATGTTTCGCCGA+TGG | 0.552575 | 5_3:-44176250 | Msa0813410:CDS |
| TGATGTCACATTTGTAGATG+AGG | 0.555230 | 5_3:-44175925 | Msa0813410:CDS |
| GCAAGATGGAACGATGGTGT+TGG | 0.562261 | 5_3:-44175347 | Msa0813410:CDS |
| AAGATAAATGTACGTTGTGA+GGG | 0.562827 | 5_3:-44176131 | Msa0813410:CDS |
| CAAGATAAATGTACGTTGTG+AGG | 0.565030 | 5_3:-44176132 | Msa0813410:CDS |
| AGCAAGACATCCAGTTCGCA+TGG | 0.572129 | 5_3:+44181377 | None:intergenic |
| ATTATGAGGAAGCTTTGGAA+GGG | 0.579688 | 5_3:-44176172 | Msa0813410:CDS |
| CGATTACTTTGCAATAAAGA+GGG | 0.582695 | 5_3:-44181447 | Msa0813410:CDS |
| GGAATGTTGTTATAATGTGA+TGG | 0.585101 | 5_3:+44175227 | None:intergenic |
| GGAGGACGAAGATGCAGAGG+AGG | 0.585160 | 5_3:-44175859 | Msa0813410:CDS |
| CGTTGTGAGGGAAATGTCAA+TGG | 0.585916 | 5_3:-44176119 | Msa0813410:CDS |
| ATTTGGAGTCACAGAAGCAT+CGG | 0.589265 | 5_3:+44175513 | None:intergenic |
| GTACGGTGGGATTCCAAATG+TGG | 0.589315 | 5_3:-44175291 | Msa0813410:CDS |
| TGCATTCAATAGGCTTTGTG+AGG | 0.594478 | 5_3:-44176216 | Msa0813410:CDS |
| TATAACTACACTGATCATCA+AGG | 0.599053 | 5_3:-44181105 | Msa0813410:CDS |
| CTCCAAAGAAGGTCATAATG+AGG | 0.600558 | 5_3:-44176276 | Msa0813410:intron |
| ACTACACTGATCATCAAGGA+AGG | 0.601680 | 5_3:-44181101 | Msa0813410:CDS |
| TACGGTGGGATTCCAAATGT+GGG | 0.603843 | 5_3:-44175290 | Msa0813410:CDS |
| CCCACCGTACACAGGAAAAG+CGG | 0.608963 | 5_3:+44175304 | None:intergenic |
| TGTCACATTTGTAGATGAGG+AGG | 0.610653 | 5_3:-44175922 | Msa0813410:CDS |
| TATGAGCGTGTTGAAGGACA+TGG | 0.611684 | 5_3:-44175092 | Msa0813410:CDS |
| TTGTAGAATGGTATGCCACA+TGG | 0.614759 | 5_3:-44175374 | Msa0813410:intron |
| TGTCGTAAGGAAGGATGATG+TGG | 0.617262 | 5_3:-44181502 | Msa0813410:CDS |
| CGAGGAGGACGAAGATGCAG+AGG | 0.621599 | 5_3:-44175862 | Msa0813410:CDS |
| CTATTTGTTCCAGGATACAA+AGG | 0.622428 | 5_3:+44175206 | None:intergenic |
| TGTTGTTATAATGTGATGGA+AGG | 0.624294 | 5_3:+44175231 | None:intergenic |
| CCTTCCTTACGACAAACCCA+TGG | 0.631542 | 5_3:+44181511 | None:intergenic |
| CCAGATAATGCTAAACCCAA+AGG | 0.637551 | 5_3:-44176062 | Msa0813410:CDS |
| TCAGTACCAAATGGTAGACA+TGG | 0.638027 | 5_3:-44175646 | Msa0813410:CDS |
| AGAAAGACAGACAATTGCAA+TGG | 0.640943 | 5_3:-44181633 | Msa0813410:CDS |
| TTTGGAATCCCACCGTACAC+AGG | 0.642001 | 5_3:+44175296 | None:intergenic |
| ATGCAGCGGTAAGTGCCCAT+CGG | 0.649814 | 5_3:+44176234 | None:intergenic |
| TCTCGATAATGATACTGTAG+AGG | 0.650298 | 5_3:-44181697 | Msa0813410:CDS |
| CTACACTGATCATCAAGGAA+GGG | 0.653825 | 5_3:-44181100 | Msa0813410:CDS |
| GGTGGGATTCCAAATGTGGG+TGG | 0.655522 | 5_3:-44175287 | Msa0813410:CDS |
| TGTGATGGAAGGATGTCTGC+CGG | 0.655796 | 5_3:+44175242 | None:intergenic |
| AGAATATGAGAAGGAATACG+AGG | 0.657997 | 5_3:-44175880 | Msa0813410:CDS |
| ACAAAGCCTATTGAATGCAG+CGG | 0.663816 | 5_3:+44176220 | None:intergenic |
| TGATGTGGTAAAGGATCACG+AGG | 0.665235 | 5_3:-44181487 | Msa0813410:CDS |
| ATGGAAGGATGTCTGCCGGA+GGG | 0.699279 | 5_3:+44175246 | None:intergenic |
| TTCCATCTTGCAAATCCATG+TGG | 0.706354 | 5_3:+44175359 | None:intergenic |
| AGCTATGGAGTTTAGCACAG+AGG | 0.706449 | 5_3:-44181571 | Msa0813410:CDS |
| ATATGAGAAGGAATACGAGG+AGG | 0.710733 | 5_3:-44175877 | Msa0813410:CDS |
| GATGGAAGGATGTCTGCCGG+AGG | 0.734244 | 5_3:+44175245 | None:intergenic |
| GGATTTGCAAGATGGAACGA+TGG | 0.744995 | 5_3:-44175353 | Msa0813410:CDS |
| GATGTGGTAAAGGATCACGA+GGG | 0.855257 | 5_3:-44181486 | Msa0813410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTTGAATTGA+AGG | - | chr5_3:44176096-44176115 | Msa0813410:CDS | 10.0% |
| !! | AATGAAAATAACAATAAAAT+TGG | - | chr5_3:44178797-44178816 | Msa0813410:intron | 10.0% |
| !! | AAATAATGATATAAAAGCTA+TGG | - | chr5_3:44175194-44175213 | Msa0813410:intron | 15.0% |
| !! | AAATCTTGGATTTATAAAAA+AGG | - | chr5_3:44175647-44175666 | Msa0813410:CDS | 15.0% |
| !!! | TTGATTTTAAGTTTGAAAAT+TGG | - | chr5_3:44176196-44176215 | Msa0813410:CDS | 15.0% |
| !! | AAAATAAAAGGAAAATCAAT+GGG | - | chr5_3:44176342-44176361 | Msa0813410:intron | 15.0% |
| !! | AATTAAAGTGTATGATAATA+AGG | - | chr5_3:44176698-44176717 | Msa0813410:intron | 15.0% |
| !!! | TTAACATTATGATAAGTTTT+AGG | + | chr5_3:44176889-44176908 | None:intergenic | 15.0% |
| !!! | AAAACACATAGTAATTTTTT+AGG | - | chr5_3:44177317-44177336 | Msa0813410:intron | 15.0% |
| !! | TAAGAAAAAAAAAAACAAAC+AGG | - | chr5_3:44177349-44177368 | Msa0813410:intron | 15.0% |
| !! | AAGAAAAAAAAAAACAAACA+GGG | - | chr5_3:44177350-44177369 | Msa0813410:intron | 15.0% |
| !!! | TAAAACAAAAATTGACTTAA+AGG | - | chr5_3:44178696-44178715 | Msa0813410:intron | 15.0% |
| !!! | ATGTCATTTTATTTCTTTTA+AGG | + | chr5_3:44178737-44178756 | None:intergenic | 15.0% |
| !! | AAGAAATAAAATGACATAAA+AGG | - | chr5_3:44178740-44178759 | Msa0813410:intron | 15.0% |
| !! | CAATAAAATTGGAATAAAAT+TGG | - | chr5_3:44178808-44178827 | Msa0813410:intron | 15.0% |
| !!! | TTTTAAAATGGATTTTTAAC+AGG | - | chr5_3:44178998-44179017 | Msa0813410:intron | 15.0% |
| !!! | TTTAAAATGGATTTTTAACA+GGG | - | chr5_3:44178999-44179018 | Msa0813410:intron | 15.0% |
| !! | TCAATATTAACTGTAATATT+TGG | + | chr5_3:44181287-44181306 | None:intergenic | 15.0% |
| !! | CAATCAATAAGTTAAAAAAT+TGG | + | chr5_3:44181611-44181630 | None:intergenic | 15.0% |
| !! | TTCATTTGATTCTGAATTAT+AGG | - | chr5_3:44175520-44175539 | Msa0813410:CDS | 20.0% |
| !! | AAAATTGATATTTACACGTA+AGG | - | chr5_3:44176030-44176049 | Msa0813410:intron | 20.0% |
| !! | GAAAATAAAAGGAAAATCAA+TGG | - | chr5_3:44176341-44176360 | Msa0813410:intron | 20.0% |
| !!! | TCTTTTTTCTAACAAACTTT+GGG | + | chr5_3:44176376-44176395 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTAACAAACTT+TGG | + | chr5_3:44176377-44176396 | None:intergenic | 20.0% |
| !!! | TGATGTTGTTCATATTTTTT+TGG | - | chr5_3:44176402-44176421 | Msa0813410:intron | 20.0% |
| !!! | CATAGATATTTTTAGATGTA+TGG | + | chr5_3:44176511-44176530 | None:intergenic | 20.0% |
| !!! | ACAATTTTTAATTTCTTGCA+AGG | + | chr5_3:44176623-44176642 | None:intergenic | 20.0% |
| !! | TTATCACACTAAATAATATG+AGG | - | chr5_3:44176960-44176979 | Msa0813410:intron | 20.0% |
| !! | AAAAAGCAAGATATTAATCA+AGG | - | chr5_3:44177223-44177242 | Msa0813410:intron | 20.0% |
| !! | AAAAGCAAGATATTAATCAA+GGG | - | chr5_3:44177224-44177243 | Msa0813410:intron | 20.0% |
| !! | AGAAAAAAAAAAACAAACAG+GGG | - | chr5_3:44177351-44177370 | Msa0813410:intron | 20.0% |
| !!! | TTTGTTTTAAGTCCTTTTTT+GGG | + | chr5_3:44178685-44178704 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTAAGTCCTTTTT+TGG | + | chr5_3:44178686-44178705 | None:intergenic | 20.0% |
| !! | TTGGAATAAAATTGGTAAAT+TGG | - | chr5_3:44178816-44178835 | Msa0813410:intron | 20.0% |
| !! | AACGATTAAAATTGACAAAA+CGG | - | chr5_3:44178855-44178874 | Msa0813410:intron | 20.0% |
| !! | TTAAAGGACTAAAATGAATT+TGG | - | chr5_3:44179229-44179248 | Msa0813410:intron | 20.0% |
| !!! | TATTTTTAGGTCCAAAATTA+GGG | - | chr5_3:44179384-44179403 | Msa0813410:intron | 20.0% |
| !!! | TCGGTTAGAAAATATATTTT+GGG | - | chr5_3:44179424-44179443 | Msa0813410:intron | 20.0% |
| !! | ATATAAATTGAAGCAAATGT+GGG | - | chr5_3:44179919-44179938 | Msa0813410:intron | 20.0% |
| !!! | TTGGAAATAGTGTAATTTTT+AGG | - | chr5_3:44180266-44180285 | Msa0813410:intron | 20.0% |
| !!! | TGGAAATAGTGTAATTTTTA+GGG | - | chr5_3:44180267-44180286 | Msa0813410:intron | 20.0% |
| !!! | TGCATGATTTTTACATTTTA+GGG | + | chr5_3:44180747-44180766 | None:intergenic | 20.0% |
| !!! | TTGCATGATTTTTACATTTT+AGG | + | chr5_3:44180748-44180767 | None:intergenic | 20.0% |
| !!! | AATGTCTATATTTGTTGTTT+TGG | + | chr5_3:44181240-44181259 | None:intergenic | 20.0% |
| ! | AGAAGAATGAAGATAGTAAT+AGG | - | chr5_3:44175376-44175395 | Msa0813410:intron | 25.0% |
| ! | AATCTTCTGAATGAAATCAT+AGG | + | chr5_3:44175442-44175461 | None:intergenic | 25.0% |
| ! | ATGATTTCATTCAGAAGATT+TGG | - | chr5_3:44175442-44175461 | Msa0813410:intron | 25.0% |
| ! | AGAATCAAATGAACAAGATT+TGG | + | chr5_3:44175513-44175532 | None:intergenic | 25.0% |
| ! | TTATAGGAAATTGAGTGAAT+CGG | - | chr5_3:44175536-44175555 | Msa0813410:CDS | 25.0% |
| ! | TCATATACTAGGTTTCTTAA+TGG | - | chr5_3:44175605-44175624 | Msa0813410:CDS | 25.0% |
| ! | CATATACTAGGTTTCTTAAT+GGG | - | chr5_3:44175606-44175625 | Msa0813410:CDS | 25.0% |
| !! | AAGGTAAACTCTGAAAAAAA+AGG | + | chr5_3:44175775-44175794 | None:intergenic | 25.0% |
| ! | CAAGATAAAACAATCTGTAA+AGG | + | chr5_3:44175794-44175813 | None:intergenic | 25.0% |
| !!! | CTTTACAGATTGTTTTATCT+TGG | - | chr5_3:44175792-44175811 | Msa0813410:intron | 25.0% |
| !!! | GATTGTTTTATCTTGGTTTT+CGG | - | chr5_3:44175799-44175818 | Msa0813410:CDS | 25.0% |
| !!! | ATTGTTTTATCTTGGTTTTC+GGG | - | chr5_3:44175800-44175819 | Msa0813410:CDS | 25.0% |
| ! | AAGAAAAAATGAGATATCAC+CGG | + | chr5_3:44175859-44175878 | None:intergenic | 25.0% |
| !!! | GTGATATCTCATTTTTTCTT+GGG | - | chr5_3:44175859-44175878 | Msa0813410:CDS | 25.0% |
| !!! | TCTTCCAAAAATGTTTTTGT+TGG | - | chr5_3:44176173-44176192 | Msa0813410:CDS | 25.0% |
| !! | TCAACCAACAAAAACATTTT+TGG | + | chr5_3:44176180-44176199 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGATGTATGGCT+AGG | + | chr5_3:44176506-44176525 | None:intergenic | 25.0% |
| ! | CTTAGAATGTAAAAAACCTA+GGG | + | chr5_3:44176667-44176686 | None:intergenic | 25.0% |
| ! | AAAAGAAACACTAAGAAACT+TGG | - | chr5_3:44176821-44176840 | Msa0813410:intron | 25.0% |
| ! | TAATGAAATCCTTAACCTAA+AGG | - | chr5_3:44176851-44176870 | Msa0813410:intron | 25.0% |
| ! | CAAGAATTATGATATGTCTT+AGG | - | chr5_3:44177004-44177023 | Msa0813410:intron | 25.0% |
| ! | GTGGAAAATTTACTATGATT+TGG | + | chr5_3:44177191-44177210 | None:intergenic | 25.0% |
| !!! | GCTTTTTTGTTAAAATTGTG+TGG | + | chr5_3:44177210-44177229 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAAAAACACA+TGG | - | chr5_3:44177294-44177313 | Msa0813410:intron | 25.0% |
| ! | ACATAAGAACATCAATGAAT+CGG | - | chr5_3:44177718-44177737 | Msa0813410:intron | 25.0% |
| ! | TATATATCATTCGTACACTT+TGG | - | chr5_3:44177849-44177868 | Msa0813410:intron | 25.0% |
| !!! | AACTTTTAGAAATTGCACTT+TGG | + | chr5_3:44178767-44178786 | None:intergenic | 25.0% |
| !! | AGTGCAATTTCTAAAAGTTT+AGG | - | chr5_3:44178768-44178787 | Msa0813410:intron | 25.0% |
| ! | ATGAACCAATTACTTAAATG+AGG | - | chr5_3:44178884-44178903 | Msa0813410:intron | 25.0% |
| ! | AAGTACCTCATTTAAGTAAT+TGG | + | chr5_3:44178892-44178911 | None:intergenic | 25.0% |
| !!! | ACTCAGATGCAATTTTAAAA+TGG | - | chr5_3:44178986-44179005 | Msa0813410:intron | 25.0% |
| !! | TCCAAATGCAATTTTTGATA+TGG | - | chr5_3:44179145-44179164 | Msa0813410:intron | 25.0% |
| ! | TCCATATCAAAAATTGCATT+TGG | + | chr5_3:44179149-44179168 | None:intergenic | 25.0% |
| !!! | TTTTGATATGGATTTTGACA+TGG | - | chr5_3:44179157-44179176 | Msa0813410:intron | 25.0% |
| !!! | GTATTTTTAGGTCCAAAATT+AGG | - | chr5_3:44179383-44179402 | Msa0813410:intron | 25.0% |
| !! | GTCGGTTAGAAAATATATTT+TGG | - | chr5_3:44179423-44179442 | Msa0813410:intron | 25.0% |
| !! | ATACCTGTTCTTTTTATAAG+TGG | + | chr5_3:44179507-44179526 | None:intergenic | 25.0% |
| ! | AATCCTGTAAAAATTACAAG+CGG | + | chr5_3:44179536-44179555 | None:intergenic | 25.0% |
| ! | AATTAAAGCACATGCAAAAA+TGG | + | chr5_3:44179579-44179598 | None:intergenic | 25.0% |
| ! | AAACAATAGAGACATATAAG+TGG | - | chr5_3:44179606-44179625 | Msa0813410:intron | 25.0% |
| ! | AACAATAGAGACATATAAGT+GGG | - | chr5_3:44179607-44179626 | Msa0813410:intron | 25.0% |
| ! | CATATAAATTGAAGCAAATG+TGG | - | chr5_3:44179918-44179937 | Msa0813410:intron | 25.0% |
| ! | AAAGTTCTTAGAAGTCAAAA+AGG | - | chr5_3:44180198-44180217 | Msa0813410:intron | 25.0% |
| !! | TTTTGCAAATTAGACTTTCT+GGG | + | chr5_3:44180441-44180460 | None:intergenic | 25.0% |
| !! | AAAGTCTAATTTGCAAAAGA+TGG | - | chr5_3:44180443-44180462 | Msa0813410:intron | 25.0% |
| ! | ATGGTCAAAAACAATAAAGA+AGG | - | chr5_3:44180462-44180481 | Msa0813410:intron | 25.0% |
| !! | GCATGATTTTTACATTTTAG+GGG | + | chr5_3:44180746-44180765 | None:intergenic | 25.0% |
| !!! | ACTTTATTTCTTTTATGTCC+AGG | - | chr5_3:44181070-44181089 | Msa0813410:intron | 25.0% |
| !!! | ATGTTTTGATTGTTGTAGAA+TGG | - | chr5_3:44181394-44181413 | Msa0813410:CDS | 25.0% |
| GTAGAATTCAGTAGTGATAA+TGG | - | chr5_3:44175105-44175124 | Msa0813410:intron | 30.0% | |
| !!! | TTCAGTAGTGATAATGGTTT+TGG | - | chr5_3:44175111-44175130 | Msa0813410:intron | 30.0% |
| !!! | GATAATGGTTTTGGTAATGA+TGG | - | chr5_3:44175120-44175139 | Msa0813410:intron | 30.0% |
| CGATTACTTTGCAATAAAGA+GGG | - | chr5_3:44175333-44175352 | Msa0813410:CDS | 30.0% | |
| ATCAAATGAACAAGATTTGG+AGG | + | chr5_3:44175510-44175529 | None:intergenic | 30.0% | |
| TAAGAAACCTAGTATATGAC+AGG | + | chr5_3:44175604-44175623 | None:intergenic | 30.0% | |
| TATAACTACACTGATCATCA+AGG | - | chr5_3:44175675-44175694 | Msa0813410:CDS | 30.0% | |
| !!! | TGCTACTTTGAGTTATTTTC+AGG | - | chr5_3:44175728-44175747 | Msa0813410:intron | 30.0% |
| !! | GCTACTTTGAGTTATTTTCA+GGG | - | chr5_3:44175729-44175748 | Msa0813410:intron | 30.0% |
| ! | TACGTTTGAACCTTTTTAAC+CGG | - | chr5_3:44175837-44175856 | Msa0813410:CDS | 30.0% |
| !!! | GGTGATATCTCATTTTTTCT+TGG | - | chr5_3:44175858-44175877 | Msa0813410:CDS | 30.0% |
| !!! | TATCTCATTTTTTCTTGGGA+AGG | - | chr5_3:44175863-44175882 | Msa0813410:CDS | 30.0% |
| !!! | ATCTCATTTTTTCTTGGGAA+GGG | - | chr5_3:44175864-44175883 | Msa0813410:CDS | 30.0% |
| TAGGATACTATAGTCGTTAT+GGG | + | chr5_3:44175958-44175977 | None:intergenic | 30.0% | |
| ATAGGATACTATAGTCGTTA+TGG | + | chr5_3:44175959-44175978 | None:intergenic | 30.0% | |
| TAACGACTATAGTATCCTAT+AGG | - | chr5_3:44175959-44175978 | Msa0813410:CDS | 30.0% | |
| GGATTTACTAAGTGAAGAAT+TGG | - | chr5_3:44176051-44176070 | Msa0813410:CDS | 30.0% | |
| TTTACTAAGTGAAGAATTGG+AGG | - | chr5_3:44176054-44176073 | Msa0813410:CDS | 30.0% | |
| TTACTAAGTGAAGAATTGGA+GGG | - | chr5_3:44176055-44176074 | Msa0813410:CDS | 30.0% | |
| !! | ACATTTTTGGAAGAGAACTA+CGG | + | chr5_3:44176167-44176186 | None:intergenic | 30.0% |
| GTATGTTTAGATGAATGCTT+AGG | + | chr5_3:44176453-44176472 | None:intergenic | 30.0% | |
| GCATGTTTAGATGTATGTTT+AGG | + | chr5_3:44176479-44176498 | None:intergenic | 30.0% | |
| GCTTAGAATGTAAAAAACCT+AGG | + | chr5_3:44176668-44176687 | None:intergenic | 30.0% | |
| TAAGGACCAAGAATATAAGA+TGG | - | chr5_3:44176716-44176735 | Msa0813410:intron | 30.0% | |
| CATCTTCCATCTTATATTCT+TGG | + | chr5_3:44176725-44176744 | None:intergenic | 30.0% | |
| ! | TAGCATAGGGTATTATAGAA+TGG | - | chr5_3:44176787-44176806 | Msa0813410:intron | 30.0% |
| ! | AGCATAGGGTATTATAGAAT+GGG | - | chr5_3:44176788-44176807 | Msa0813410:intron | 30.0% |
| ! | CATCATGTCAACTTTTCTAA+AGG | - | chr5_3:44176935-44176954 | Msa0813410:intron | 30.0% |
| ! | TGTTTTACTGTCTTGTGAAA+TGG | + | chr5_3:44177095-44177114 | None:intergenic | 30.0% |
| AGTAAAACAACCACAAATTC+AGG | - | chr5_3:44177106-44177125 | Msa0813410:intron | 30.0% | |
| GTAAAACAACCACAAATTCA+GGG | - | chr5_3:44177107-44177126 | Msa0813410:intron | 30.0% | |
| TAAAACAACCACAAATTCAG+GGG | - | chr5_3:44177108-44177127 | Msa0813410:intron | 30.0% | |
| AAATATCACCAAGAACACAT+AGG | - | chr5_3:44177385-44177404 | Msa0813410:intron | 30.0% | |
| ! | TTCAAGAGTGTATATAAGCA+AGG | - | chr5_3:44177513-44177532 | Msa0813410:intron | 30.0% |
| ! | TGTTCTTATGTTTCAAGTGT+TGG | + | chr5_3:44177709-44177728 | None:intergenic | 30.0% |
| !! | AATTAAGCTTCGTTTTGATC+TGG | - | chr5_3:44178046-44178065 | Msa0813410:intron | 30.0% |
| TGAATTTGATCTGATTCTTC+TGG | - | chr5_3:44178136-44178155 | Msa0813410:intron | 30.0% | |
| !! | TTCGTTTCTGGAAAGTTTTT+AGG | - | chr5_3:44178354-44178373 | Msa0813410:intron | 30.0% |
| !! | TCGTTTCTGGAAAGTTTTTA+GGG | - | chr5_3:44178355-44178374 | Msa0813410:intron | 30.0% |
| !!! | AAAGTTTTTAGGGTTTTGAG+TGG | - | chr5_3:44178365-44178384 | Msa0813410:intron | 30.0% |
| ! | ATTAAACAGAGCTTTAACAC+TGG | - | chr5_3:44179078-44179097 | Msa0813410:intron | 30.0% |
| !!! | AGACTCAAGCAGTTTTTTAA+AGG | - | chr5_3:44179213-44179232 | Msa0813410:intron | 30.0% |
| ACTAAAATGAATTTGGATGC+AGG | - | chr5_3:44179236-44179255 | Msa0813410:intron | 30.0% | |
| CCTGCAAAATTCATGAAAAA+GGG | + | chr5_3:44179276-44179295 | None:intergenic | 30.0% | |
| ACCTGCAAAATTCATGAAAA+AGG | + | chr5_3:44179277-44179296 | None:intergenic | 30.0% | |
| GACTTAAAATGCAAGAAAAG+AGG | - | chr5_3:44179350-44179369 | Msa0813410:intron | 30.0% | |
| AAAATGCAAGAAAAGAGGAA+TGG | - | chr5_3:44179355-44179374 | Msa0813410:intron | 30.0% | |
| ! | TCTGTGTTATACCCTAATTT+TGG | + | chr5_3:44179398-44179417 | None:intergenic | 30.0% |
| ! | AGGCTTGATTATGAATGTTT+TGG | - | chr5_3:44179461-44179480 | Msa0813410:intron | 30.0% |
| ! | GGTGTTAAATGTGTTTTCAA+AGG | - | chr5_3:44179628-44179647 | Msa0813410:intron | 30.0% |
| ! | TTTTGGATGATTTTCGTACA+TGG | + | chr5_3:44179654-44179673 | None:intergenic | 30.0% |
| ! | TTGAACTCTTCTAAGAATCT+GGG | + | chr5_3:44179797-44179816 | None:intergenic | 30.0% |
| ATGGTGTATCAAAGAATAAG+TGG | - | chr5_3:44179885-44179904 | Msa0813410:intron | 30.0% | |
| TGGTGTATCAAAGAATAAGT+GGG | - | chr5_3:44179886-44179905 | Msa0813410:intron | 30.0% | |
| AAGGTGTGAATTCATTTATC+AGG | - | chr5_3:44179999-44180018 | Msa0813410:intron | 30.0% | |
| AATTATGCAGAAAATCAACG+AGG | + | chr5_3:44180048-44180067 | None:intergenic | 30.0% | |
| CTACAGACATAATGAATTGT+TGG | - | chr5_3:44180087-44180106 | Msa0813410:intron | 30.0% | |
| CTTCATGACAGAAATAATGT+GGG | + | chr5_3:44180398-44180417 | None:intergenic | 30.0% | |
| ACTTCATGACAGAAATAATG+TGG | + | chr5_3:44180399-44180418 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAATTAGACTTTC+TGG | + | chr5_3:44180442-44180461 | None:intergenic | 30.0% |
| AGGTCATAATGAGGAAAAAA+TGG | - | chr5_3:44180513-44180532 | Msa0813410:intron | 30.0% | |
| ! | TAACAATGCCATTGATTATG+AGG | - | chr5_3:44180594-44180613 | Msa0813410:intron | 30.0% |
| AAGATAAATGTACGTTGTGA+GGG | - | chr5_3:44180649-44180668 | Msa0813410:intron | 30.0% | |
| AAATGTCAATGGCAACAATA+AGG | - | chr5_3:44180672-44180691 | Msa0813410:intron | 30.0% | |
| AAGGTCAATAAATCTGTTGT+TGG | - | chr5_3:44180691-44180710 | Msa0813410:intron | 30.0% | |
| GGATAAAGAAGAATATGAGA+AGG | - | chr5_3:44180891-44180910 | Msa0813410:intron | 30.0% | |
| !! | ATTTGGTACTGACATAGAAT+GGG | + | chr5_3:44181126-44181145 | None:intergenic | 30.0% |
| !! | CATGGTGTTGATAATATCTT+TGG | - | chr5_3:44181152-44181171 | Msa0813410:CDS | 30.0% |
| ! | AGAGTCTTGTGTTGAAAAAT+CGG | + | chr5_3:44181207-44181226 | None:intergenic | 30.0% |
| ! | TGTTGTTATAATGTGATGGA+AGG | + | chr5_3:44181552-44181571 | None:intergenic | 30.0% |
| GGAATGTTGTTATAATGTGA+TGG | + | chr5_3:44181556-44181575 | None:intergenic | 30.0% | |
| TAACATACACTATTTGTTCC+AGG | + | chr5_3:44181586-44181605 | None:intergenic | 30.0% | |
| TCTCGATAATGATACTGTAG+AGG | - | chr5_3:44175083-44175102 | Msa0813410:CDS | 35.0% | |
| AGAAAGACAGACAATTGCAA+TGG | - | chr5_3:44175147-44175166 | Msa0813410:intron | 35.0% | |
| GCGATTACTTTGCAATAAAG+AGG | - | chr5_3:44175332-44175351 | Msa0813410:CDS | 35.0% | |
| CTTAGTTCATGGTTGTGATT+GGG | + | chr5_3:44175486-44175505 | None:intergenic | 35.0% | |
| ACTTAGTTCATGGTTGTGAT+TGG | + | chr5_3:44175487-44175506 | None:intergenic | 35.0% | |
| TCGGATAAACAGATTGTTAG+TGG | - | chr5_3:44175555-44175574 | Msa0813410:CDS | 35.0% | |
| GTAAGAACCTGTCATATACT+AGG | - | chr5_3:44175594-44175613 | Msa0813410:CDS | 35.0% | |
| ! | GATTTTCATGTCCTCCTTTT+TGG | + | chr5_3:44175632-44175651 | None:intergenic | 35.0% |
| AAAGGAGGACATGAAAATCT+TGG | - | chr5_3:44175633-44175652 | Msa0813410:CDS | 35.0% | |
| ! | TGAGATATCACCGGTTAAAA+AGG | + | chr5_3:44175850-44175869 | None:intergenic | 35.0% |
| AAAGTAAAGACGGTTCCTAT+AGG | + | chr5_3:44175977-44175996 | None:intergenic | 35.0% | |
| GTTTGAAGAATGAGATTGAG+AGG | - | chr5_3:44176220-44176239 | Msa0813410:CDS | 35.0% | |
| TTTCCAATCTCATGCCTTTA+AGG | + | chr5_3:44176246-44176265 | None:intergenic | 35.0% | |
| CATGAGATTGGAAAAAAGTG+AGG | - | chr5_3:44176252-44176271 | Msa0813410:CDS | 35.0% | |
| TAAACTAGGGCATGATGTAA+AGG | + | chr5_3:44176590-44176609 | None:intergenic | 35.0% | |
| ATGCCCTAGTTTACATTCTA+TGG | - | chr5_3:44176597-44176616 | Msa0813410:intron | 35.0% | |
| AGGCCATAGAATGTAAACTA+GGG | + | chr5_3:44176603-44176622 | None:intergenic | 35.0% | |
| AAGGCCATAGAATGTAAACT+AGG | + | chr5_3:44176604-44176623 | None:intergenic | 35.0% | |
| AGTAAAGTACAAGAATCCCT+AGG | - | chr5_3:44176648-44176667 | Msa0813410:intron | 35.0% | |
| GATGGAAGATGAAATGTCTA+TGG | - | chr5_3:44176734-44176753 | Msa0813410:intron | 35.0% | |
| GCATGAAACATGAAGTAAAG+TGG | - | chr5_3:44176760-44176779 | Msa0813410:intron | 35.0% | |
| AGTAAAGTGGTTAGTAGCAT+AGG | - | chr5_3:44176773-44176792 | Msa0813410:intron | 35.0% | |
| GTAAAGTGGTTAGTAGCATA+GGG | - | chr5_3:44176774-44176793 | Msa0813410:intron | 35.0% | |
| TGAAATCCTTAACCTAAAGG+TGG | - | chr5_3:44176854-44176873 | Msa0813410:intron | 35.0% | |
| TGACATGATGTGAGGATTAT+AGG | + | chr5_3:44176925-44176944 | None:intergenic | 35.0% | |
| AGAAAAGTTGACATGATGTG+AGG | + | chr5_3:44176933-44176952 | None:intergenic | 35.0% | |
| ! | CTTGATGTGTGATTTTGTGA+TGG | + | chr5_3:44177139-44177158 | None:intergenic | 35.0% |
| ! | TATCATATGTCAGAGCATCA+TGG | - | chr5_3:44177165-44177184 | Msa0813410:intron | 35.0% |
| GCTTATATACACTCTTGAAC+CGG | + | chr5_3:44177512-44177531 | None:intergenic | 35.0% | |
| GAGTGAAATAAGTCCTAGAT+CGG | + | chr5_3:44177663-44177682 | None:intergenic | 35.0% | |
| TTCGTGTTTATGGTGAGAAA+AGG | + | chr5_3:44177685-44177704 | None:intergenic | 35.0% | |
| !! | AAGTGTTGGATTCGTGTTTA+TGG | + | chr5_3:44177695-44177714 | None:intergenic | 35.0% |
| ! | AGATTTTGCCAGAAGATCAA+AGG | + | chr5_3:44177969-44177988 | None:intergenic | 35.0% |
| ! | ATGTTTGATTCGAAACCCTA+GGG | - | chr5_3:44178008-44178027 | Msa0813410:intron | 35.0% |
| TCTGGTTGAATGTTTCTTGA+TGG | - | chr5_3:44178064-44178083 | Msa0813410:intron | 35.0% | |
| !! | GAATGTTTCTTGATGGATTC+TGG | - | chr5_3:44178071-44178090 | Msa0813410:intron | 35.0% |
| GAAAATCAGAGAATACGAAG+AGG | + | chr5_3:44178167-44178186 | None:intergenic | 35.0% | |
| CTTGTGATGAATTTCGTTTC+TGG | - | chr5_3:44178342-44178361 | Msa0813410:intron | 35.0% | |
| !! | TTCTTCATGGTTCTGGAAAA+CGG | - | chr5_3:44178397-44178416 | Msa0813410:intron | 35.0% |
| !!! | CGGTTACAGTTTTGATTTTC+TGG | - | chr5_3:44178417-44178436 | Msa0813410:intron | 35.0% |
| ! | TGATGATTAGGCCCTTTTAT+AGG | - | chr5_3:44178497-44178516 | Msa0813410:intron | 35.0% |
| TCCAATAGAATGTTGACATG+TGG | - | chr5_3:44178539-44178558 | Msa0813410:intron | 35.0% | |
| TCCACATGTCAACATTCTAT+TGG | + | chr5_3:44178543-44178562 | None:intergenic | 35.0% | |
| !!! | TTGGTGTATTTTTGGACTCA+GGG | - | chr5_3:44178586-44178605 | Msa0813410:intron | 35.0% |
| TAAGTTCCAAAATTGCAGGA+TGG | + | chr5_3:44178613-44178632 | None:intergenic | 35.0% | |
| !!! | TCCTGCAATTTTGGAACTTA+AGG | - | chr5_3:44178613-44178632 | Msa0813410:intron | 35.0% |
| !!! | CCTGCAATTTTGGAACTTAA+GGG | - | chr5_3:44178614-44178633 | Msa0813410:intron | 35.0% |
| AAGTTCCCTAAATTGCAGAT+TGG | + | chr5_3:44178641-44178660 | None:intergenic | 35.0% | |
| AAATGACTAAAATGCCCCTA+GGG | - | chr5_3:44179101-44179120 | Msa0813410:intron | 35.0% | |
| !! | CCCTTTTTCATGAATTTTGC+AGG | - | chr5_3:44179273-44179292 | Msa0813410:intron | 35.0% |
| ! | GGAATGGAGCTAGTATTTTT+AGG | - | chr5_3:44179371-44179390 | Msa0813410:intron | 35.0% |
| TTAGGGTATAACACAGATGA+TGG | - | chr5_3:44179401-44179420 | Msa0813410:intron | 35.0% | |
| !!! | TTATGAATGTTTTGGCGATG+TGG | - | chr5_3:44179469-44179488 | Msa0813410:intron | 35.0% |
| ACGCCACTTATAAAAAGAAC+AGG | - | chr5_3:44179501-44179520 | Msa0813410:intron | 35.0% | |
| ! | AAGCCGCTTGTAATTTTTAC+AGG | - | chr5_3:44179530-44179549 | Msa0813410:intron | 35.0% |
| ! | CAAAAATGGTTGTTTCACCA+TGG | + | chr5_3:44179565-44179584 | None:intergenic | 35.0% |
| !! | CCTCATTGATTTATCTCCAT+CGG | + | chr5_3:44179687-44179706 | None:intergenic | 35.0% |
| GAGATGTATTTCCGAATTCA+AGG | - | chr5_3:44179717-44179736 | Msa0813410:intron | 35.0% | |
| ! | GTTGAACTCTTCTAAGAATC+TGG | + | chr5_3:44179798-44179817 | None:intergenic | 35.0% |
| TTCTAACTCCACACACAAAA+TGG | + | chr5_3:44179964-44179983 | None:intergenic | 35.0% | |
| AGAAGTCAAAAAGGCGATAA+AGG | - | chr5_3:44180207-44180226 | Msa0813410:intron | 35.0% | |
| ACAGAAATAATGTGGGAACA+TGG | + | chr5_3:44180391-44180410 | None:intergenic | 35.0% | |
| TGTCATGAAGTATGAGAACA+TGG | - | chr5_3:44180408-44180427 | Msa0813410:intron | 35.0% | |
| TTCCTCATTATGACCTTCTT+TGG | + | chr5_3:44180509-44180528 | None:intergenic | 35.0% | |
| CAAAGCTTCCTCATAATCAA+TGG | + | chr5_3:44180605-44180624 | None:intergenic | 35.0% | |
| ! | CATTGATTATGAGGAAGCTT+TGG | - | chr5_3:44180603-44180622 | Msa0813410:intron | 35.0% |
| !! | ATTATGAGGAAGCTTTGGAA+GGG | - | chr5_3:44180608-44180627 | Msa0813410:intron | 35.0% |
| CAAGATAAATGTACGTTGTG+AGG | - | chr5_3:44180648-44180667 | Msa0813410:intron | 35.0% | |
| ACATCAATTCCAGCAAGTAT+TGG | + | chr5_3:44180841-44180860 | None:intergenic | 35.0% | |
| TGATGTCACATTTGTAGATG+AGG | - | chr5_3:44180855-44180874 | Msa0813410:intron | 35.0% | |
| AGAATATGAGAAGGAATACG+AGG | - | chr5_3:44180900-44180919 | Msa0813410:intron | 35.0% | |
| ACAGCAAATTCATCACAAGA+TGG | + | chr5_3:44181040-44181059 | None:intergenic | 35.0% | |
| !! | CATTTGGTACTGACATAGAA+TGG | + | chr5_3:44181127-44181146 | None:intergenic | 35.0% |
| CATTCTATGTCAGTACCAAA+TGG | - | chr5_3:44181125-44181144 | Msa0813410:CDS | 35.0% | |
| !! | TTTTTCAACACAAGACTCTG+CGG | - | chr5_3:44181208-44181227 | Msa0813410:CDS | 35.0% |
| AACAACATTCCTTTGTATCC+TGG | - | chr5_3:44181565-44181584 | Msa0813410:CDS | 35.0% | |
| CTATTTGTTCCAGGATACAA+AGG | + | chr5_3:44181577-44181596 | None:intergenic | 35.0% | |
| ATGTTGAGCTGCTTCACTAT+AGG | + | chr5_3:44175064-44175083 | None:intergenic | 40.0% | |
| TTACGACAAACCCATGGAAA+CGG | + | chr5_3:44175266-44175285 | None:intergenic | 40.0% | |
| AAGGAAGGATGATGTGGTAA+AGG | - | chr5_3:44175284-44175303 | Msa0813410:CDS | 40.0% | |
| GATTTGGAGGACTTAGTTCA+TGG | + | chr5_3:44175497-44175516 | None:intergenic | 40.0% | |
| ! | GTTAGTGGTTTGCATTCTCA+AGG | - | chr5_3:44175570-44175589 | Msa0813410:CDS | 40.0% |
| ! | GGTTTCTTAATGGGCCAAAA+AGG | - | chr5_3:44175615-44175634 | Msa0813410:CDS | 40.0% |
| ! | TTCTTAATGGGCCAAAAAGG+AGG | - | chr5_3:44175618-44175637 | Msa0813410:CDS | 40.0% |
| ACTACACTGATCATCAAGGA+AGG | - | chr5_3:44175679-44175698 | Msa0813410:CDS | 40.0% | |
| CTACACTGATCATCAAGGAA+GGG | - | chr5_3:44175680-44175699 | Msa0813410:CDS | 40.0% | |
| CAAGGAAGGGTTAGAATTGA+AGG | - | chr5_3:44175693-44175712 | Msa0813410:intron | 40.0% | |
| GTGGATTTGATCCCTTAAAC+GGG | + | chr5_3:44176145-44176164 | None:intergenic | 40.0% | |
| ! | GGTGGATTTGATCCCTTAAA+CGG | + | chr5_3:44176146-44176165 | None:intergenic | 40.0% |
| !! | TTTTTGGAAGAGAACTACGG+TGG | + | chr5_3:44176164-44176183 | None:intergenic | 40.0% |
| ATGAGATTGAGAGGCCTTAA+AGG | - | chr5_3:44176229-44176248 | Msa0813410:CDS | 40.0% | |
| GAGATTGGAAAAAAGTGAGG+TGG | - | chr5_3:44176255-44176274 | Msa0813410:CDS | 40.0% | |
| ! | ATCTTGCCACCTTTAGGTTA+AGG | + | chr5_3:44176863-44176882 | None:intergenic | 40.0% |
| AGGAATATCTTGCCACCTTT+AGG | + | chr5_3:44176869-44176888 | None:intergenic | 40.0% | |
| CTGTCTTGTGAAATGGTTTG+TGG | + | chr5_3:44177088-44177107 | None:intergenic | 40.0% | |
| GTGTATATAAGCAAGGAACC+CGG | - | chr5_3:44177520-44177539 | Msa0813410:intron | 40.0% | |
| GTTAGAATGAGGATTGAACC+GGG | + | chr5_3:44177541-44177560 | None:intergenic | 40.0% | |
| GGTTAGAATGAGGATTGAAC+CGG | + | chr5_3:44177542-44177561 | None:intergenic | 40.0% | |
| AGAAAGAGAGGGTTAGAATG+AGG | + | chr5_3:44177552-44177571 | None:intergenic | 40.0% | |
| AGATCGGAGAAAGAAGATGA+CGG | + | chr5_3:44177647-44177666 | None:intergenic | 40.0% | |
| TCATCTTCTTTCTCCGATCT+AGG | - | chr5_3:44177647-44177666 | Msa0813410:intron | 40.0% | |
| AGATCGAGCATGAACTCTTA+CGG | - | chr5_3:44177744-44177763 | Msa0813410:intron | 40.0% | |
| GATTTCGAAAGAAACGAGAG+AGG | - | chr5_3:44177876-44177895 | Msa0813410:intron | 40.0% | |
| ! | TCGAATCTTTGATTTCCCAC+AGG | + | chr5_3:44177914-44177933 | None:intergenic | 40.0% |
| AGATTCGAACGAGAAAGAGT+TGG | - | chr5_3:44177926-44177945 | Msa0813410:intron | 40.0% | |
| CGATTTGTCCTTTGATCTTC+TGG | - | chr5_3:44177958-44177977 | Msa0813410:intron | 40.0% | |
| ! | GATGTTTGATTCGAAACCCT+AGG | - | chr5_3:44178007-44178026 | Msa0813410:intron | 40.0% |
| !! | TGTTTCTTGATGGATTCTGG+CGG | - | chr5_3:44178074-44178093 | Msa0813410:intron | 40.0% |
| GTGGTTCATCATGTTCTTCA+TGG | - | chr5_3:44178384-44178403 | Msa0813410:intron | 40.0% | |
| CATCATGTTCTTCATGGTTC+TGG | - | chr5_3:44178390-44178409 | Msa0813410:intron | 40.0% | |
| TCTGGAGAAGAGTGAGAAAA+TGG | - | chr5_3:44178435-44178454 | Msa0813410:intron | 40.0% | |
| CTGGAGAAGAGTGAGAAAAT+GGG | - | chr5_3:44178436-44178455 | Msa0813410:intron | 40.0% | |
| ! | GGGAAATGTGTTTGTTGAGT+TGG | - | chr5_3:44178456-44178475 | Msa0813410:intron | 40.0% |
| !! | GTGTTTGTTGAGTTGGCAAT+TGG | - | chr5_3:44178463-44178482 | Msa0813410:intron | 40.0% |
| GTGATTGCTCTGTGATGATT+AGG | - | chr5_3:44178485-44178504 | Msa0813410:intron | 40.0% | |
| ACACATGGCAGCCTATAAAA+GGG | + | chr5_3:44178511-44178530 | None:intergenic | 40.0% | |
| AACACATGGCAGCCTATAAA+AGG | + | chr5_3:44178512-44178531 | None:intergenic | 40.0% | |
| ! | TATTGGAGCATCAGAACACA+TGG | + | chr5_3:44178526-44178545 | None:intergenic | 40.0% |
| AGAATGTTGACATGTGGACT+TGG | - | chr5_3:44178545-44178564 | Msa0813410:intron | 40.0% | |
| !! | ATTCGGCCTTGGTGTATTTT+TGG | - | chr5_3:44178578-44178597 | Msa0813410:intron | 40.0% |
| CTGAGTCCAAAAATACACCA+AGG | + | chr5_3:44178587-44178606 | None:intergenic | 40.0% | |
| !!! | CTTGGTGTATTTTTGGACTC+AGG | - | chr5_3:44178585-44178604 | Msa0813410:intron | 40.0% |
| CCCTTAAGTTCCAAAATTGC+AGG | + | chr5_3:44178617-44178636 | None:intergenic | 40.0% | |
| AAGGGACCAATCTGCAATTT+AGG | - | chr5_3:44178632-44178651 | Msa0813410:intron | 40.0% | |
| AGGGACCAATCTGCAATTTA+GGG | - | chr5_3:44178633-44178652 | Msa0813410:intron | 40.0% | |
| CTGCAATTTAGGGAACTTAG+AGG | - | chr5_3:44178643-44178662 | Msa0813410:intron | 40.0% | |
| ATTTAGGGAACTTAGAGGAC+TGG | - | chr5_3:44178648-44178667 | Msa0813410:intron | 40.0% | |
| GACTGCAATTGACCCAAAAA+AGG | - | chr5_3:44178670-44178689 | Msa0813410:intron | 40.0% | |
| CATGAAATTTCGACAGAGAG+AGG | + | chr5_3:44178923-44178942 | None:intergenic | 40.0% | |
| TGAAATGACCAAAATGCCCT+TGG | - | chr5_3:44178943-44178962 | Msa0813410:intron | 40.0% | |
| GAAATGACCAAAATGCCCTT+GGG | - | chr5_3:44178944-44178963 | Msa0813410:intron | 40.0% | |
| AAATGACCAAAATGCCCTTG+GGG | - | chr5_3:44178945-44178964 | Msa0813410:intron | 40.0% | |
| TTAAGTCAGTTTAGCCCCAA+GGG | + | chr5_3:44178962-44178981 | None:intergenic | 40.0% | |
| TTTAAGTCAGTTTAGCCCCA+AGG | + | chr5_3:44178963-44178982 | None:intergenic | 40.0% | |
| GAAATGACTAAAATGCCCCT+AGG | - | chr5_3:44179100-44179119 | Msa0813410:intron | 40.0% | |
| AATGACTAAAATGCCCCTAG+GGG | - | chr5_3:44179102-44179121 | Msa0813410:intron | 40.0% | |
| ! | GGTATAACACAGATGATGGT+CGG | - | chr5_3:44179405-44179424 | Msa0813410:intron | 40.0% |
| TTTACAGGATTCAACCACCA+TGG | - | chr5_3:44179545-44179564 | Msa0813410:intron | 40.0% | |
| ! | AAATGGTTGTTTCACCATGG+TGG | + | chr5_3:44179562-44179581 | None:intergenic | 40.0% |
| CCGATGGAGATAAATCAATG+AGG | - | chr5_3:44179684-44179703 | Msa0813410:intron | 40.0% | |
| GATGTAGATGCCATGAACAA+AGG | + | chr5_3:44179748-44179767 | None:intergenic | 40.0% | |
| CACTCAGACTCAAATTGTTC+AGG | + | chr5_3:44179845-44179864 | None:intergenic | 40.0% | |
| CTGAACAATTTGAGTCTGAG+TGG | - | chr5_3:44179843-44179862 | Msa0813410:intron | 40.0% | |
| AATTTGAGTCTGAGTGGAAG+AGG | - | chr5_3:44179849-44179868 | Msa0813410:intron | 40.0% | |
| ATTTGAGTCTGAGTGGAAGA+GGG | - | chr5_3:44179850-44179869 | Msa0813410:intron | 40.0% | |
| AAGAGGGTTGTTGACAGTTA+TGG | - | chr5_3:44179866-44179885 | Msa0813410:intron | 40.0% | |
| AGAACGACATCGATATGTGA+AGG | - | chr5_3:44179980-44179999 | Msa0813410:intron | 40.0% | |
| CACTATTTCCAACCTCAACA+TGG | + | chr5_3:44180258-44180277 | None:intergenic | 40.0% | |
| CGCAGAAAACTGCATCTTTA+CGG | + | chr5_3:44180303-44180322 | None:intergenic | 40.0% | |
| TTTCTGCGTTCATCATGACA+AGG | - | chr5_3:44180315-44180334 | Msa0813410:intron | 40.0% | |
| TCATCATTTGCCTCCAAAGA+AGG | - | chr5_3:44180493-44180512 | Msa0813410:intron | 40.0% | |
| CTCATTATGACCTTCTTTGG+AGG | + | chr5_3:44180506-44180525 | None:intergenic | 40.0% | |
| CTCCAAAGAAGGTCATAATG+AGG | - | chr5_3:44180504-44180523 | Msa0813410:intron | 40.0% | |
| ACAAAGCCTATTGAATGCAG+CGG | + | chr5_3:44180563-44180582 | None:intergenic | 40.0% | |
| ! | TGCATTCAATAGGCTTTGTG+AGG | - | chr5_3:44180564-44180583 | Msa0813410:intron | 40.0% |
| !! | GATTATGAGGAAGCTTTGGA+AGG | - | chr5_3:44180607-44180626 | Msa0813410:intron | 40.0% |
| ! | CCTTTGGGTTTAGCATTATC+TGG | + | chr5_3:44180721-44180740 | None:intergenic | 40.0% |
| CCAGATAATGCTAAACCCAA+AGG | - | chr5_3:44180718-44180737 | Msa0813410:intron | 40.0% | |
| !! | TACATTTTAGGGGCTCCTTT+GGG | + | chr5_3:44180736-44180755 | None:intergenic | 40.0% |
| !! | TTACATTTTAGGGGCTCCTT+TGG | + | chr5_3:44180737-44180756 | None:intergenic | 40.0% |
| GACGTTGTTCTCGTTGTAAA+AGG | - | chr5_3:44180791-44180810 | Msa0813410:intron | 40.0% | |
| TGTTCTCGTTGTAAAAGGCA+TGG | - | chr5_3:44180796-44180815 | Msa0813410:intron | 40.0% | |
| !! | CAGCAAGTATTGGACACTTT+CGG | + | chr5_3:44180831-44180850 | None:intergenic | 40.0% |
| TGTCACATTTGTAGATGAGG+AGG | - | chr5_3:44180858-44180877 | Msa0813410:intron | 40.0% | |
| ATATGAGAAGGAATACGAGG+AGG | - | chr5_3:44180903-44180922 | Msa0813410:intron | 40.0% | |
| TCAGTACCAAATGGTAGACA+TGG | - | chr5_3:44181134-44181153 | Msa0813410:CDS | 40.0% | |
| TCAACACCATGTCTACCATT+TGG | + | chr5_3:44181143-44181162 | None:intergenic | 40.0% | |
| ! | ATTTGGAGTCACAGAAGCAT+CGG | + | chr5_3:44181270-44181289 | None:intergenic | 40.0% |
| TTGTAGAATGGTATGCCACA+TGG | - | chr5_3:44181406-44181425 | Msa0813410:CDS | 40.0% | |
| TTCCATCTTGCAAATCCATG+TGG | + | chr5_3:44181424-44181443 | None:intergenic | 40.0% | |
| GAAGTTAATCCACCCACATT+TGG | + | chr5_3:44181505-44181524 | None:intergenic | 40.0% | |
| AACTTCTTCACAATTCCCTC+CGG | - | chr5_3:44181519-44181538 | Msa0813410:CDS | 40.0% | |
| ACAGTTTATGAGCGTGTTGA+AGG | - | chr5_3:44181682-44181701 | Msa0813410:CDS | 40.0% | |
| AGCTATGGAGTTTAGCACAG+AGG | - | chr5_3:44175209-44175228 | Msa0813410:CDS | 45.0% | |
| TACGACAAACCCATGGAAAC+GGG | + | chr5_3:44175265-44175284 | None:intergenic | 45.0% | |
| GTTTCCATGGGTTTGTCGTA+AGG | - | chr5_3:44175265-44175284 | Msa0813410:CDS | 45.0% | |
| TGTCGTAAGGAAGGATGATG+TGG | - | chr5_3:44175278-44175297 | Msa0813410:CDS | 45.0% | |
| TGATGTGGTAAAGGATCACG+AGG | - | chr5_3:44175293-44175312 | Msa0813410:CDS | 45.0% | |
| GATGTGGTAAAGGATCACGA+GGG | - | chr5_3:44175294-44175313 | Msa0813410:CDS | 45.0% | |
| ACGAGGGAAAAATTGTTGCG+CGG | - | chr5_3:44175310-44175329 | Msa0813410:CDS | 45.0% | |
| AATAGGCAAACCATGCGAAC+TGG | - | chr5_3:44175393-44175412 | Msa0813410:intron | 45.0% | |
| GGAAGGGTTAGAATTGAAGG+TGG | - | chr5_3:44175696-44175715 | Msa0813410:intron | 45.0% | |
| AGCAAAACCCTTGAGAATCG+AGG | - | chr5_3:44175895-44175914 | Msa0813410:CDS | 45.0% | |
| TTGCCTACGTACCCGTTTAA+GGG | - | chr5_3:44176131-44176150 | Msa0813410:CDS | 45.0% | |
| ! | AGGCCTTAAAGGCATGAGAT+TGG | - | chr5_3:44176240-44176259 | Msa0813410:CDS | 45.0% |
| TGTGATGTGTGTGCATGTGT+CGG | - | chr5_3:44176529-44176548 | Msa0813410:intron | 45.0% | |
| TGGATATGCCCCTGAATTTG+TGG | + | chr5_3:44177119-44177138 | None:intergenic | 45.0% | |
| ATCACCAAGAACACATAGGC+AGG | - | chr5_3:44177389-44177408 | Msa0813410:intron | 45.0% | |
| TCACCAAGAACACATAGGCA+GGG | - | chr5_3:44177390-44177409 | Msa0813410:intron | 45.0% | |
| AGCTTCCAGGCATGCAAAAA+GGG | - | chr5_3:44177429-44177448 | Msa0813410:intron | 45.0% | |
| ! | TTTGGAATGGCTCGTACCAT+GGG | - | chr5_3:44177481-44177500 | Msa0813410:intron | 45.0% |
| AACCCTCTCTTTCTCTCTCT+AGG | - | chr5_3:44177558-44177577 | Msa0813410:intron | 45.0% | |
| GACCTAGAGAGAGAAAGAGA+GGG | + | chr5_3:44177563-44177582 | None:intergenic | 45.0% | |
| TGACCTAGAGAGAGAAAGAG+AGG | + | chr5_3:44177564-44177583 | None:intergenic | 45.0% | |
| AGGACGAAGAGTTTACCTGT+GGG | - | chr5_3:44177896-44177915 | Msa0813410:intron | 45.0% | |
| TTCGAACGAGAAAGAGTTGG+AGG | - | chr5_3:44177929-44177948 | Msa0813410:intron | 45.0% | |
| ! | GATTCGAAACCCTAGGGTTT+TGG | - | chr5_3:44178014-44178033 | Msa0813410:intron | 45.0% |
| !!! | GAAACCCTAGGGTTTTGGAT+TGG | - | chr5_3:44178019-44178038 | Msa0813410:intron | 45.0% |
| ACTTCGAGAGTGAGAAGAAG+AGG | + | chr5_3:44178197-44178216 | None:intergenic | 45.0% | |
| GAATCCGTCACTATGAGTGA+CGG | - | chr5_3:44178235-44178254 | Msa0813410:intron | 45.0% | |
| GATTCCGTCACTCATAGTGA+CGG | + | chr5_3:44178242-44178261 | None:intergenic | 45.0% | |
| GACTTGGACCCTAACTGATT+CGG | - | chr5_3:44178561-44178580 | Msa0813410:intron | 45.0% | |
| TTGAGTCAGTTTAGCCCCTA+GGG | + | chr5_3:44179119-44179138 | None:intergenic | 45.0% | |
| TTTGAGTCAGTTTAGCCCCT+AGG | + | chr5_3:44179120-44179139 | None:intergenic | 45.0% | |
| ! | CCATCGGTAACAATCGCTTT+TGG | + | chr5_3:44179671-44179690 | None:intergenic | 45.0% |
| CCAAAAGCGATTGTTACCGA+TGG | - | chr5_3:44179668-44179687 | Msa0813410:intron | 45.0% | |
| CAAAGGCGATGCCTTGAATT+CGG | + | chr5_3:44179731-44179750 | None:intergenic | 45.0% | |
| ! | ATGCGAGACCATTTTGTGTG+TGG | - | chr5_3:44179953-44179972 | Msa0813410:intron | 45.0% |
| ATCTGTCACTCACCATGTTG+AGG | - | chr5_3:44180243-44180262 | Msa0813410:intron | 45.0% | |
| AAATGGTCATGTTTCGCCGA+TGG | - | chr5_3:44180530-44180549 | Msa0813410:intron | 45.0% | |
| AATGGTCATGTTTCGCCGAT+GGG | - | chr5_3:44180531-44180550 | Msa0813410:intron | 45.0% | |
| CACTTACCGCTGCATTCAAT+AGG | - | chr5_3:44180554-44180573 | Msa0813410:intron | 45.0% | |
| CGTTGTGAGGGAAATGTCAA+TGG | - | chr5_3:44180661-44180680 | Msa0813410:intron | 45.0% | |
| !! | CGAAAGTGTCCAATACTTGC+TGG | - | chr5_3:44180829-44180848 | Msa0813410:intron | 45.0% |
| CACATTTGTAGATGAGGAGG+AGG | - | chr5_3:44180861-44180880 | Msa0813410:intron | 45.0% | |
| ATTTGTAGATGAGGAGGAGG+AGG | - | chr5_3:44180864-44180883 | Msa0813410:intron | 45.0% | |
| TGCCACATGGATTTGCAAGA+TGG | - | chr5_3:44181419-44181438 | Msa0813410:CDS | 45.0% | |
| GGATTTGCAAGATGGAACGA+TGG | - | chr5_3:44181427-44181446 | Msa0813410:CDS | 45.0% | |
| CAAGATGGAACGATGGTGTT+GGG | - | chr5_3:44181434-44181453 | Msa0813410:CDS | 45.0% | |
| ! | AACGATGGTGTTGGGTATGT+TGG | - | chr5_3:44181442-44181461 | Msa0813410:CDS | 45.0% |
| !! | TTTCCCGCTTTTCCTGTGTA+CGG | - | chr5_3:44181472-44181491 | Msa0813410:CDS | 45.0% |
| TACGGTGGGATTCCAAATGT+GGG | - | chr5_3:44181490-44181509 | Msa0813410:CDS | 45.0% | |
| TATGAGCGTGTTGAAGGACA+TGG | - | chr5_3:44181688-44181707 | Msa0813410:CDS | 45.0% | |
| !!! | ATTTTATTTAAGAAAATAAA+AGG | - | chr5_3:44176330-44176349 | Msa0813410:intron | 5.0% |
| AAAGCGTATGCCCGTTTCCA+TGG | - | chr5_3:44175252-44175271 | Msa0813410:CDS | 50.0% | |
| AAGCGTATGCCCGTTTCCAT+GGG | - | chr5_3:44175253-44175272 | Msa0813410:CDS | 50.0% | |
| CCTTCCTTACGACAAACCCA+TGG | + | chr5_3:44175272-44175291 | None:intergenic | 50.0% | |
| CCATGGGTTTGTCGTAAGGA+AGG | - | chr5_3:44175269-44175288 | Msa0813410:CDS | 50.0% | |
| AGCAAGACATCCAGTTCGCA+TGG | + | chr5_3:44175406-44175425 | None:intergenic | 50.0% | |
| AACCCTTGAGAATCGAGGTC+CGG | - | chr5_3:44175900-44175919 | Msa0813410:CDS | 50.0% | |
| !! | TCCGGGAGTTGTTTTCGCTA+CGG | - | chr5_3:44175918-44175937 | Msa0813410:CDS | 50.0% |
| !! | GAGTTGTTTTCGCTACGGGA+AGG | - | chr5_3:44175923-44175942 | Msa0813410:CDS | 50.0% |
| !! | TTTCGCTACGGGAAGGTGTT+AGG | - | chr5_3:44175930-44175949 | Msa0813410:CDS | 50.0% |
| GCGCGCGTAGAAAGTAAAGA+CGG | + | chr5_3:44175987-44176006 | None:intergenic | 50.0% | |
| CTTAAACGGGTACGTAGGCA+AGG | + | chr5_3:44176132-44176151 | None:intergenic | 50.0% | |
| CTTGCCTACGTACCCGTTTA+AGG | - | chr5_3:44176130-44176149 | Msa0813410:CDS | 50.0% | |
| GATCCCTTAAACGGGTACGT+AGG | + | chr5_3:44176137-44176156 | None:intergenic | 50.0% | |
| CACCAAGAACACATAGGCAG+GGG | - | chr5_3:44177391-44177410 | Msa0813410:intron | 50.0% | |
| ACCAAGAACACATAGGCAGG+GGG | - | chr5_3:44177392-44177411 | Msa0813410:intron | 50.0% | |
| GAGCTTCCAGGCATGCAAAA+AGG | - | chr5_3:44177428-44177447 | Msa0813410:intron | 50.0% | |
| AGGCATGCAAAAAGGGCTCA+GGG | - | chr5_3:44177436-44177455 | Msa0813410:intron | 50.0% | |
| GAGAGAAACAGGTCGGGTTA+GGG | - | chr5_3:44177458-44177477 | Msa0813410:intron | 50.0% | |
| ! | AAACAGGTCGGGTTAGGGTT+TGG | - | chr5_3:44177463-44177482 | Msa0813410:intron | 50.0% |
| ! | GTTTGGAATGGCTCGTACCA+TGG | - | chr5_3:44177480-44177499 | Msa0813410:intron | 50.0% |
| ! | TCTTGAACCGGTTCAACCCA+TGG | + | chr5_3:44177500-44177519 | None:intergenic | 50.0% |
| !! | GAAGATGACGGAATCTACGC+CGG | + | chr5_3:44177635-44177654 | None:intergenic | 50.0% |
| !! | ACGGTTTTCGAAGCGTCTTC+AGG | - | chr5_3:44177763-44177782 | Msa0813410:intron | 50.0% |
| GAGGACGAAGAGTTTACCTG+TGG | - | chr5_3:44177895-44177914 | Msa0813410:intron | 50.0% | |
| CGAGCCAATCCAAAACCCTA+GGG | + | chr5_3:44178026-44178045 | None:intergenic | 50.0% | |
| TCGAGCCAATCCAAAACCCT+AGG | + | chr5_3:44178027-44178046 | None:intergenic | 50.0% | |
| CACCAAGGCCGAATCAGTTA+GGG | + | chr5_3:44178572-44178591 | None:intergenic | 50.0% | |
| ACACCAAGGCCGAATCAGTT+AGG | + | chr5_3:44178573-44178592 | None:intergenic | 50.0% | |
| ! | CAGGGACCATCCTGCAATTT+TGG | - | chr5_3:44178604-44178623 | Msa0813410:intron | 50.0% |
| !!! | GTTTAGCCCCAAGGGCATTT+TGG | + | chr5_3:44178954-44178973 | None:intergenic | 50.0% |
| TGAGTCAGTTTAGCCCCTAG+GGG | + | chr5_3:44179118-44179137 | None:intergenic | 50.0% | |
| TTTGGGCAGATTCTGCAAGC+AGG | - | chr5_3:44179441-44179460 | Msa0813410:intron | 50.0% | |
| !! | CAAGGCATCGCCTTTGTTCA+TGG | - | chr5_3:44179735-44179754 | Msa0813410:intron | 50.0% |
| GGCAAGGAAGTTGTCAACAC+AGG | + | chr5_3:44180139-44180158 | None:intergenic | 50.0% | |
| ! | GTGTTGACAACTTCCTTGCC+TGG | - | chr5_3:44180139-44180158 | Msa0813410:intron | 50.0% |
| TTCACGCTCAAATCCAGGCA+AGG | + | chr5_3:44180155-44180174 | None:intergenic | 50.0% | |
| GAAGCTTCACGCTCAAATCC+AGG | + | chr5_3:44180160-44180179 | None:intergenic | 50.0% | |
| GTCACTCACCATGTTGAGGT+TGG | - | chr5_3:44180247-44180266 | Msa0813410:intron | 50.0% | |
| TGTCGTGGCTTATAGACACC+TGG | + | chr5_3:44181091-44181110 | None:intergenic | 50.0% | |
| GGGTTTCGTCATTCATGTCG+TGG | + | chr5_3:44181106-44181125 | None:intergenic | 50.0% | |
| GCAAGATGGAACGATGGTGT+TGG | - | chr5_3:44181433-44181452 | Msa0813410:CDS | 50.0% | |
| ! | TTTGGAATCCCACCGTACAC+AGG | + | chr5_3:44181487-44181506 | None:intergenic | 50.0% |
| GTACGGTGGGATTCCAAATG+TGG | - | chr5_3:44181489-44181508 | Msa0813410:CDS | 50.0% | |
| ! | TGTGATGGAAGGATGTCTGC+CGG | + | chr5_3:44181541-44181560 | None:intergenic | 50.0% |
| ACCCTTGAGAATCGAGGTCC+GGG | - | chr5_3:44175901-44175920 | Msa0813410:CDS | 55.0% | |
| TCCCGGACCTCGATTCTCAA+GGG | + | chr5_3:44175905-44175924 | None:intergenic | 55.0% | |
| CCCGTAGCGAAAACAACTCC+CGG | + | chr5_3:44175922-44175941 | None:intergenic | 55.0% | |
| !! | CCGGGAGTTGTTTTCGCTAC+GGG | - | chr5_3:44175919-44175938 | Msa0813410:CDS | 55.0% |
| ! | GCATGTGTCGGTGCTTGTGT+CGG | - | chr5_3:44176541-44176560 | Msa0813410:intron | 55.0% |
| ACCCCCTGCCTATGTGTTCT+TGG | + | chr5_3:44177396-44177415 | None:intergenic | 55.0% | |
| GCGCATAGCAATGAGCTTCC+AGG | - | chr5_3:44177416-44177435 | Msa0813410:intron | 55.0% | |
| ! | CTGAGCCCTTTTTGCATGCC+TGG | + | chr5_3:44177437-44177456 | None:intergenic | 55.0% |
| CAGGCATGCAAAAAGGGCTC+AGG | - | chr5_3:44177435-44177454 | Msa0813410:intron | 55.0% | |
| AAGGGCTCAGGGAGAGAAAC+AGG | - | chr5_3:44177447-44177466 | Msa0813410:intron | 55.0% | |
| GCTCAGGGAGAGAAACAGGT+CGG | - | chr5_3:44177451-44177470 | Msa0813410:intron | 55.0% | |
| CTCAGGGAGAGAAACAGGTC+GGG | - | chr5_3:44177452-44177471 | Msa0813410:intron | 55.0% | |
| GGAGAGAAACAGGTCGGGTT+AGG | - | chr5_3:44177457-44177476 | Msa0813410:intron | 55.0% | |
| ! | GGTCGGGTTAGGGTTTGGAA+TGG | - | chr5_3:44177468-44177487 | Msa0813410:intron | 55.0% |
| ! | GCTCGTACCATGGGTTGAAC+CGG | - | chr5_3:44177490-44177509 | Msa0813410:intron | 55.0% |
| CTCTCCTCTCTCTACATCGC+CGG | - | chr5_3:44177594-44177613 | Msa0813410:intron | 55.0% | |
| !! | GACCCTAACTGATTCGGCCT+TGG | - | chr5_3:44178567-44178586 | Msa0813410:intron | 55.0% |
| ATGCAGCGGTAAGTGCCCAT+CGG | + | chr5_3:44180549-44180568 | None:intergenic | 55.0% | |
| AGATGAGGAGGAGGAGGAGA+AGG | - | chr5_3:44180870-44180889 | Msa0813410:intron | 55.0% | |
| CCACCGTACACAGGAAAAGC+GGG | + | chr5_3:44181478-44181497 | None:intergenic | 55.0% | |
| CCCACCGTACACAGGAAAAG+CGG | + | chr5_3:44181479-44181498 | None:intergenic | 55.0% | |
| !! | CCGCTTTTCCTGTGTACGGT+GGG | - | chr5_3:44181476-44181495 | Msa0813410:CDS | 55.0% |
| GGTGGGATTCCAAATGTGGG+TGG | - | chr5_3:44181493-44181512 | Msa0813410:CDS | 55.0% | |
| ATGGAAGGATGTCTGCCGGA+GGG | + | chr5_3:44181537-44181556 | None:intergenic | 55.0% | |
| CTCCCGGACCTCGATTCTCA+AGG | + | chr5_3:44175906-44175925 | None:intergenic | 60.0% | |
| TCCTCTCTCTACATCGCCGG+CGG | - | chr5_3:44177597-44177616 | Msa0813410:intron | 60.0% | |
| !! | GATGACGGAATCTACGCCGG+CGG | + | chr5_3:44177632-44177651 | None:intergenic | 60.0% |
| CGAGGAGGACGAAGATGCAG+AGG | - | chr5_3:44180918-44180937 | Msa0813410:intron | 60.0% | |
| GGAGGACGAAGATGCAGAGG+AGG | - | chr5_3:44180921-44180940 | Msa0813410:intron | 60.0% | |
| GGACGAAGATGCAGAGGAGG+AGG | - | chr5_3:44180924-44180943 | Msa0813410:intron | 60.0% | |
| CGAAGATGCAGAGGAGGAGG+TGG | - | chr5_3:44180927-44180946 | Msa0813410:intron | 60.0% | |
| AGATGCAGAGGAGGAGGTGG+AGG | - | chr5_3:44180930-44180949 | Msa0813410:intron | 60.0% | |
| !! | CCCGCTTTTCCTGTGTACGG+TGG | - | chr5_3:44181475-44181494 | Msa0813410:CDS | 60.0% |
| GATGGAAGGATGTCTGCCGG+AGG | + | chr5_3:44181538-44181557 | None:intergenic | 60.0% | |
| CCTCTCTCTACATCGCCGGC+GGG | - | chr5_3:44177598-44177617 | Msa0813410:intron | 65.0% | |
| TGCAGAGGAGGAGGTGGAGG+AGG | - | chr5_3:44180933-44180952 | Msa0813410:intron | 65.0% | |
| AGAGGAGGAGGTGGAGGAGG+AGG | - | chr5_3:44180936-44180955 | Msa0813410:intron | 65.0% | |
| CCCGCCGGCGATGTAGAGAG+AGG | + | chr5_3:44177601-44177620 | None:intergenic | 70.0% | |
| GACGGAATCTACGCCGGCGG+CGG | + | chr5_3:44177629-44177648 | None:intergenic | 70.0% | |
| ! | CCGGCGGCGGTGAAACCCGC+CGG | + | chr5_3:44177616-44177635 | None:intergenic | 80.0% |
| !! | CCGGCGGGTTTCACCGCCGC+CGG | - | chr5_3:44177613-44177632 | Msa0813410:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 44175054 | 44181748 | 44175054 | ID=Msa0813410;Name=Msa0813410 |
| chr5_3 | mRNA | 44175054 | 44181748 | 44175054 | ID=Msa0813410-mRNA-1;Parent=Msa0813410;Name=Msa0813410-mRNA-1;_AED=0.50;_eAED=0.53;_QI=0|0|0|0.16|1|1|6|0|520 |
| chr5_3 | exon | 44181088 | 44181748 | 44181088 | ID=Msa0813410-mRNA-1:exon:13648;Parent=Msa0813410-mRNA-1 |
| chr5_3 | exon | 44176050 | 44176290 | 44176050 | ID=Msa0813410-mRNA-1:exon:13647;Parent=Msa0813410-mRNA-1 |
| chr5_3 | exon | 44175797 | 44175989 | 44175797 | ID=Msa0813410-mRNA-1:exon:13646;Parent=Msa0813410-mRNA-1 |
| chr5_3 | exon | 44175492 | 44175710 | 44175492 | ID=Msa0813410-mRNA-1:exon:13645;Parent=Msa0813410-mRNA-1 |
| chr5_3 | exon | 44175205 | 44175390 | 44175205 | ID=Msa0813410-mRNA-1:exon:13644;Parent=Msa0813410-mRNA-1 |
| chr5_3 | exon | 44175054 | 44175116 | 44175054 | ID=Msa0813410-mRNA-1:exon:13643;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44181088 | 44181748 | 44181088 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44176050 | 44176290 | 44176050 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44175797 | 44175989 | 44175797 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44175492 | 44175710 | 44175492 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44175205 | 44175390 | 44175205 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| chr5_3 | CDS | 44175054 | 44175116 | 44175054 | ID=Msa0813410-mRNA-1:cds;Parent=Msa0813410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
