Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814550 | XP_003616034.2 | 95.929 | 786 | 32 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814550 | sp|Q6Z3U3|Y7797_ORYSJ | 41.440 | 847 | 395 | 20 | 6 | 771 | 17 | 843 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814550 | G7K0T7 | 95.929 | 786 | 32 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1529 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0814550 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814550 | MtrunA17_Chr5g0432721 | 95.929 | 786 | 32 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1529 |
| Msa0814550 | MtrunA17_Chr3g0107701 | 55.833 | 840 | 301 | 14 | 1 | 778 | 1 | 832 | 0.0 | 848 |
| Msa0814550 | MtrunA17_Chr4g0012861 | 42.823 | 836 | 397 | 12 | 1 | 777 | 1 | 814 | 0.0 | 610 |
| Msa0814550 | MtrunA17_Chr2g0281191 | 41.058 | 548 | 223 | 12 | 283 | 774 | 314 | 817 | 7.71e-110 | 356 |
| Msa0814550 | MtrunA17_Chr2g0281191 | 43.066 | 137 | 60 | 5 | 6 | 135 | 31 | 156 | 1.65e-23 | 106 |
| Msa0814550 | MtrunA17_Chr7g0244871 | 58.065 | 93 | 39 | 0 | 314 | 406 | 5 | 97 | 2.38e-32 | 120 |
| Msa0814550 | MtrunA17_Chr7g0251891 | 48.235 | 85 | 43 | 1 | 321 | 404 | 16 | 100 | 1.82e-19 | 87.4 |
| Msa0814550 | MtrunA17_Chr7g0237841 | 38.235 | 102 | 61 | 2 | 321 | 420 | 623 | 724 | 6.81e-15 | 79.0 |
| Msa0814550 | MtrunA17_Chr1g0178071 | 37.037 | 135 | 64 | 6 | 302 | 422 | 54 | 181 | 1.15e-14 | 76.3 |
| Msa0814550 | MtrunA17_Chr5g0422501 | 41.818 | 110 | 47 | 4 | 321 | 417 | 235 | 340 | 7.51e-14 | 74.3 |
| Msa0814550 | MtrunA17_Chr7g0276471 | 38.462 | 91 | 51 | 3 | 321 | 408 | 117 | 205 | 1.58e-13 | 73.6 |
| Msa0814550 | MtrunA17_Chr7g0266821 | 41.176 | 102 | 50 | 5 | 326 | 421 | 65 | 162 | 1.05e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814550 | AT4G32010.2 | 41.019 | 746 | 315 | 14 | 3 | 706 | 4 | 666 | 1.96e-175 | 523 |
| Msa0814550 | AT4G32010.1 | 40.800 | 750 | 315 | 15 | 3 | 706 | 4 | 670 | 1.11e-173 | 519 |
| Msa0814550 | AT2G30470.1 | 40.564 | 816 | 360 | 20 | 1 | 774 | 6 | 738 | 1.00e-172 | 517 |
| Msa0814550 | AT4G21550.2 | 33.333 | 453 | 260 | 10 | 3 | 437 | 14 | 442 | 2.94e-68 | 235 |
| Msa0814550 | AT4G21550.3 | 33.333 | 453 | 260 | 10 | 3 | 437 | 14 | 442 | 1.73e-67 | 233 |
| Msa0814550 | AT4G21550.1 | 33.333 | 453 | 260 | 10 | 3 | 437 | 14 | 442 | 2.63e-67 | 237 |
| Msa0814550 | AT4G21550.1 | 40.336 | 119 | 56 | 4 | 657 | 774 | 551 | 655 | 2.83e-12 | 70.9 |
| Msa0814550 | AT3G26790.1 | 39.806 | 103 | 61 | 1 | 321 | 422 | 91 | 193 | 2.92e-18 | 87.0 |
| Msa0814550 | AT5G06250.5 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 1.98e-15 | 77.8 |
| Msa0814550 | AT2G36080.4 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 2.02e-15 | 75.5 |
| Msa0814550 | AT2G36080.2 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 2.02e-15 | 75.5 |
| Msa0814550 | AT5G06250.4 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.03e-15 | 78.2 |
| Msa0814550 | AT5G06250.2 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.22e-15 | 77.8 |
| Msa0814550 | AT1G28300.1 | 40.206 | 97 | 57 | 1 | 321 | 416 | 170 | 266 | 2.45e-15 | 79.0 |
| Msa0814550 | AT5G06250.3 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.51e-15 | 77.4 |
| Msa0814550 | AT3G24650.1 | 40.196 | 102 | 59 | 2 | 321 | 420 | 571 | 672 | 2.81e-15 | 80.5 |
| Msa0814550 | AT4G01500.1 | 43.820 | 89 | 47 | 2 | 321 | 408 | 35 | 121 | 3.02e-15 | 78.2 |
| Msa0814550 | AT5G06250.1 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 3.70e-15 | 77.0 |
| Msa0814550 | AT2G36080.3 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 4.59e-15 | 75.9 |
| Msa0814550 | AT2G36080.1 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 4.63e-15 | 76.3 |
| Msa0814550 | AT1G13260.1 | 39.604 | 101 | 55 | 3 | 321 | 417 | 187 | 285 | 5.87e-15 | 77.4 |
| Msa0814550 | AT2G46870.1 | 40.659 | 91 | 49 | 3 | 321 | 408 | 34 | 122 | 7.44e-15 | 76.6 |
| Msa0814550 | AT3G25730.1 | 38.318 | 107 | 57 | 4 | 321 | 420 | 182 | 286 | 4.14e-14 | 74.7 |
| Msa0814550 | AT3G61970.1 | 38.298 | 94 | 50 | 3 | 321 | 408 | 22 | 113 | 7.71e-14 | 73.6 |
| Msa0814550 | AT1G68840.2 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.07e-13 | 72.8 |
| Msa0814550 | AT1G68840.1 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.07e-13 | 72.8 |
| Msa0814550 | AT1G01030.2 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 4.58e-13 | 71.6 |
| Msa0814550 | AT1G01030.1 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 5.36e-13 | 71.6 |
| Msa0814550 | AT3G11580.1 | 35.897 | 117 | 56 | 5 | 321 | 421 | 28 | 141 | 1.34e-12 | 69.3 |
| Msa0814550 | AT3G11580.4 | 35.897 | 117 | 56 | 5 | 321 | 421 | 28 | 141 | 9.03e-12 | 66.2 |
| Msa0814550 | AT3G11580.2 | 35.897 | 117 | 56 | 5 | 321 | 421 | 28 | 141 | 9.03e-12 | 66.2 |
| Msa0814550 | AT3G11580.5 | 35.897 | 117 | 56 | 5 | 321 | 421 | 28 | 141 | 9.03e-12 | 66.2 |
| Msa0814550 | AT3G11580.3 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 2.45e-11 | 66.6 |
Find 211 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATTGTTACAATATT+TGG | 0.086549 | 5_3:+46727871 | None:intergenic |
| CCTGGGAACAAATTTCTATT+TGG | 0.195666 | 5_3:-46728417 | Msa0814550:CDS |
| ATTCAAGAACACAAGCTTTC+AGG | 0.213336 | 5_3:-46726938 | Msa0814550:CDS |
| CACTTAACTTCTTCGGTCTT+TGG | 0.232028 | 5_3:+46729718 | None:intergenic |
| ACTTAACACCTTCTCAAATA+AGG | 0.237548 | 5_3:+46728878 | None:intergenic |
| CCCGCATTTGTTGCAGAGTT+TGG | 0.256841 | 5_3:+46731436 | None:intergenic |
| TATGATTAATTTGATTGTTT+TGG | 0.258238 | 5_3:+46726657 | None:intergenic |
| CAACTGCTTCAGATTCTAAT+TGG | 0.263143 | 5_3:+46726684 | None:intergenic |
| TTCTAACGGCATTTCGATAA+AGG | 0.267420 | 5_3:-46728232 | Msa0814550:CDS |
| ATCAGTTACTTTCTCGATAC+TGG | 0.269074 | 5_3:-46729339 | Msa0814550:CDS |
| TTTACAGTTCCAAGATATAA+TGG | 0.271409 | 5_3:-46728652 | Msa0814550:CDS |
| TATACCTCAGCACACGCTTT+AGG | 0.274614 | 5_3:+46728819 | None:intergenic |
| TGAAGACTTTCTTGTTCCTT+TGG | 0.285526 | 5_3:+46727350 | None:intergenic |
| TACATCCTACTGTTGTTATT+AGG | 0.308177 | 5_3:+46728597 | None:intergenic |
| AACGGGGAACCTTACTTAAA+TGG | 0.309832 | 5_3:-46728132 | Msa0814550:CDS |
| ACGGATGAGGGAAGCCTAAA+TGG | 0.318513 | 5_3:-46726581 | Msa0814550:CDS |
| GTTAAGGAGAAATATAAAAT+TGG | 0.325578 | 5_3:+46726309 | None:intergenic |
| CAATTAAATGCTGGTGATAC+TGG | 0.325898 | 5_3:-46728537 | Msa0814550:intron |
| ATACCTCAGCACACGCTTTA+GGG | 0.330017 | 5_3:+46728820 | None:intergenic |
| AATGTAGTAAATGCTGTTAA+AGG | 0.330641 | 5_3:+46729643 | None:intergenic |
| CATCATATTCTTCAAATACT+TGG | 0.347609 | 5_3:+46727848 | None:intergenic |
| CTAACTAAACTGTGCAGTTA+AGG | 0.347618 | 5_3:+46726293 | None:intergenic |
| TTACAGTTCCAAGATATAAT+GGG | 0.352438 | 5_3:-46728651 | Msa0814550:CDS |
| CCTCAGAATTTGAACTCATT+AGG | 0.359994 | 5_3:-46728189 | Msa0814550:CDS |
| AGGATACTGAAAATCATAAT+AGG | 0.362554 | 5_3:-46729918 | Msa0814550:CDS |
| ACATTCAGAACATCTGTGTT+TGG | 0.364331 | 5_3:-46728109 | Msa0814550:CDS |
| CCTCAAGCTGACCTCCATTT+AGG | 0.367489 | 5_3:+46726567 | None:intergenic |
| GCAAACATCTCAGTCTATAT+TGG | 0.370039 | 5_3:-46729461 | Msa0814550:CDS |
| AAATTCCACCGTCATGAAAC+TGG | 0.376289 | 5_3:-46730307 | Msa0814550:CDS |
| GCCTAGTGCTGCGGGACAAT+TGG | 0.377079 | 5_3:-46726537 | Msa0814550:CDS |
| TTCAATCAATGAAAGGTAAC+GGG | 0.377988 | 5_3:-46728149 | Msa0814550:CDS |
| TGAATCTTGAATCTTGAAAC+TGG | 0.380857 | 5_3:-46731723 | Msa0814550:five_prime_UTR |
| CTTGTTCCTTTGGACCGAGC+TGG | 0.382544 | 5_3:+46727360 | None:intergenic |
| TGAGGTGCACCAGAAAAGTT+TGG | 0.383323 | 5_3:+46728207 | None:intergenic |
| TAATATGACTAGTCATGCTT+TGG | 0.383891 | 5_3:+46726461 | None:intergenic |
| GATGGCATGGTTTCATGTAT+TGG | 0.390905 | 5_3:-46729742 | Msa0814550:CDS |
| GAACATCTGTGTTTGGGTAA+TGG | 0.393659 | 5_3:-46728102 | Msa0814550:CDS |
| AAAACCAGTGCCTCTCCATC+AGG | 0.394979 | 5_3:-46727706 | Msa0814550:CDS |
| CAATGGTCCATTGCAGCAAC+TGG | 0.398704 | 5_3:-46728034 | Msa0814550:CDS |
| CAATTCTACACAACTGCATA+AGG | 0.399404 | 5_3:+46729806 | None:intergenic |
| CCGAGTGATGCAGGTCGAAT+TGG | 0.400991 | 5_3:-46728855 | Msa0814550:CDS |
| CATTCAGAACATCTGTGTTT+GGG | 0.406034 | 5_3:-46728108 | Msa0814550:CDS |
| AAAAGAGGTCTCGCAATATT+GGG | 0.407718 | 5_3:-46727996 | Msa0814550:CDS |
| AACAATGCAAGTGATCGATA+TGG | 0.408713 | 5_3:-46729877 | Msa0814550:CDS |
| ATGAGTCTTGAAACAAATAA+AGG | 0.410706 | 5_3:-46729412 | Msa0814550:CDS |
| AGTTTCCATTTCTTCATGAC+TGG | 0.412100 | 5_3:+46726499 | None:intergenic |
| TCATCCCAGTCATGAAGAAA+TGG | 0.415741 | 5_3:-46726504 | Msa0814550:CDS |
| CTGCCGTTGGCCACTGAGAT+TGG | 0.423759 | 5_3:-46729529 | Msa0814550:CDS |
| TAAGCCCTCCCAGCTTTGTC+TGG | 0.424644 | 5_3:-46730075 | Msa0814550:intron |
| TCGTTCGAGTACCTTGATTT+CGG | 0.425356 | 5_3:-46730122 | Msa0814550:CDS |
| AGGCAAGGCAAGTGCATGTC+GGG | 0.425926 | 5_3:+46726759 | None:intergenic |
| ACTCGTTCCCCATTATATCT+TGG | 0.426035 | 5_3:+46728643 | None:intergenic |
| CTTAACACCTTCTCAAATAA+GGG | 0.428464 | 5_3:+46728879 | None:intergenic |
| GAATTGACACTTAACTTCTT+CGG | 0.430100 | 5_3:+46729711 | None:intergenic |
| TTCAAAAGGAATGGTAAAGA+TGG | 0.430406 | 5_3:-46726258 | Msa0814550:three_prime_UTR |
| TGGAAACTGATACATATAAC+AGG | 0.432852 | 5_3:-46726484 | Msa0814550:CDS |
| TCTGAATGTCCATTTAAGTA+AGG | 0.433067 | 5_3:+46728123 | None:intergenic |
| CTTATGCAGTTGTGTAGAAT+TGG | 0.437808 | 5_3:-46729805 | Msa0814550:CDS |
| GAGGCAGAATTGAAGAGATT+AGG | 0.439797 | 5_3:-46726342 | Msa0814550:three_prime_UTR |
| TATTGTAAGGAAGGTTCAAC+TGG | 0.440184 | 5_3:-46731500 | Msa0814550:CDS |
| CAACAGTAGGATGTATGTAT+TGG | 0.441536 | 5_3:-46728589 | Msa0814550:CDS |
| CTCTTTGAGCTTGTGACCAA+CGG | 0.442148 | 5_3:+46729764 | None:intergenic |
| ATTGCTTAAAACTGCTGCAT+TGG | 0.448591 | 5_3:+46726901 | None:intergenic |
| GGGTGGTCTTTGATCTCTGG+TGG | 0.449691 | 5_3:-46731464 | Msa0814550:CDS |
| ACATTTAGTCGGATAGATCC+TGG | 0.451349 | 5_3:-46728435 | Msa0814550:CDS |
| CCAGCTGACGACGACTCGTC+AGG | 0.453820 | 5_3:+46726866 | None:intergenic |
| TGGGTAATGGAACTGCTGAT+TGG | 0.454227 | 5_3:-46728089 | Msa0814550:CDS |
| CAAGAGCTGGAGAAATTGTC+GGG | 0.454716 | 5_3:-46729301 | Msa0814550:CDS |
| AAAGGGTGGTCTTTGATCTC+TGG | 0.456650 | 5_3:-46731467 | Msa0814550:CDS |
| ACAGAAAAGTGAATTCTCAT+AGG | 0.458212 | 5_3:+46730333 | None:intergenic |
| CTGCATTGGCAAGAGCATCT+AGG | 0.465149 | 5_3:+46726915 | None:intergenic |
| ATGAATAATTATTGTAAGGA+AGG | 0.465785 | 5_3:-46731509 | Msa0814550:CDS |
| AGTCATATTAAAACAACTGC+AGG | 0.477690 | 5_3:-46726448 | Msa0814550:three_prime_UTR |
| CCTGACGAGTCGTCGTCAGC+TGG | 0.478183 | 5_3:-46726866 | Msa0814550:CDS |
| AAGAAATTCTGTTCTGCCGT+TGG | 0.479555 | 5_3:-46729542 | Msa0814550:CDS |
| CCAAACTCTGCAACAAATGC+GGG | 0.482509 | 5_3:-46731436 | Msa0814550:intron |
| CATTCAACCACCAAGTGGAC+AGG | 0.483217 | 5_3:-46726792 | Msa0814550:CDS |
| TTTATTTGTTTCAAGACTCA+TGG | 0.486601 | 5_3:+46729414 | None:intergenic |
| CCAAATAGAAATTTGTTCCC+AGG | 0.487970 | 5_3:+46728417 | None:intergenic |
| CTATGGAATTGAGACTTACA+TGG | 0.489129 | 5_3:-46727936 | Msa0814550:CDS |
| ACAATATTTGGCTTGACACT+AGG | 0.490295 | 5_3:+46727883 | None:intergenic |
| TTTAACAGCATTTACTACAT+TGG | 0.491046 | 5_3:-46729641 | Msa0814550:CDS |
| GCATCGTAAGGCTCTTGAAC+CGG | 0.491358 | 5_3:+46726720 | None:intergenic |
| GCCAAATATTGTAACAATTG+AGG | 0.493508 | 5_3:-46727872 | Msa0814550:CDS |
| CCTTCACATCAGCAGGTGGC+CGG | 0.497637 | 5_3:+46729368 | None:intergenic |
| CATTCATAGCGAAGATGCTA+TGG | 0.498765 | 5_3:-46727953 | Msa0814550:CDS |
| GTGTATGAATAATTATTGTA+AGG | 0.498958 | 5_3:-46731513 | Msa0814550:CDS |
| AACTTATACCACCGAAATCA+AGG | 0.500512 | 5_3:+46730111 | None:intergenic |
| CCGGCCACCTGCTGATGTGA+AGG | 0.500794 | 5_3:-46729368 | Msa0814550:CDS |
| GTGTTAAGTCCGAGTGATGC+AGG | 0.501935 | 5_3:-46728864 | Msa0814550:CDS |
| TCAGCAGGTGGCCGGCGTGG+TGG | 0.502029 | 5_3:+46729376 | None:intergenic |
| TTGACTTTGGATTGGAAGAG+AGG | 0.503165 | 5_3:-46731577 | Msa0814550:five_prime_UTR |
| GTTTCCATTTCTTCATGACT+GGG | 0.503416 | 5_3:+46726500 | None:intergenic |
| GGTGGTCTTTGATCTCTGGT+GGG | 0.503585 | 5_3:-46731463 | Msa0814550:CDS |
| TCAAGAGCTGGAGAAATTGT+CGG | 0.505861 | 5_3:-46729302 | Msa0814550:CDS |
| CAGTAGGATGTATGTATTGG+AGG | 0.506980 | 5_3:-46728586 | Msa0814550:CDS |
| TGACTTTGGATTGGAAGAGA+GGG | 0.508427 | 5_3:-46731576 | Msa0814550:five_prime_UTR |
| TTACCCTGATGGAGAGGCAC+TGG | 0.511162 | 5_3:+46727702 | None:intergenic |
| ATTATATCTTGGAACTGTAA+AGG | 0.513021 | 5_3:+46728654 | None:intergenic |
| TCAACTGGTGAATGGAAGAA+AGG | 0.514062 | 5_3:-46731485 | Msa0814550:CDS |
| CGGCCACCTGCTGATGTGAA+GGG | 0.515875 | 5_3:-46729367 | Msa0814550:CDS |
| TTAACCTTACCAGACAAAGC+TGG | 0.516700 | 5_3:+46730066 | None:intergenic |
| CTTCAATCAATGAAAGGTAA+CGG | 0.516842 | 5_3:-46728150 | Msa0814550:CDS |
| ATTGGAGAAGGTAAACTTGA+GGG | 0.521191 | 5_3:-46729511 | Msa0814550:CDS |
| AGCTCTTGATCAGTAATCCT+TGG | 0.521679 | 5_3:+46729316 | None:intergenic |
| GGTATATAATCTTACCCTGA+TGG | 0.522702 | 5_3:+46727691 | None:intergenic |
| AAACATCCGAGGCATCGTCC+TGG | 0.526966 | 5_3:-46726833 | Msa0814550:CDS |
| AGGAAGGTTCAACTGGTGAA+TGG | 0.526974 | 5_3:-46731493 | Msa0814550:CDS |
| CGATATGGTGAACATATTGA+TGG | 0.528805 | 5_3:-46729862 | Msa0814550:CDS |
| TACAAGTCACTCAACGGATG+AGG | 0.528930 | 5_3:-46726594 | Msa0814550:CDS |
| TTGTTACAGTAACATTTAGT+CGG | 0.530093 | 5_3:-46728446 | Msa0814550:intron |
| TGAAACGCTTTCACTAAAGA+TGG | 0.532158 | 5_3:-46729581 | Msa0814550:CDS |
| CCAATTCGACCTGCATCACT+CGG | 0.532323 | 5_3:+46728855 | None:intergenic |
| AATCTTCTTCAATCAATGAA+AGG | 0.533019 | 5_3:-46728156 | Msa0814550:CDS |
| ACTGAAACCAGTTGCTGCAA+TGG | 0.534324 | 5_3:+46728027 | None:intergenic |
| TTGGCTCAACTATCAAAGAC+TGG | 0.539999 | 5_3:-46729442 | Msa0814550:CDS |
| TGATTTCAACACTAACATTG+AGG | 0.542603 | 5_3:-46731625 | Msa0814550:five_prime_UTR |
| ATCACCAGCATTTAATTGCA+AGG | 0.546441 | 5_3:+46728542 | None:intergenic |
| ATTAATCATATAGATGAAGC+AGG | 0.546533 | 5_3:-46726644 | Msa0814550:CDS |
| CAGTCCTTGCAATTAAATGC+TGG | 0.547662 | 5_3:-46728546 | Msa0814550:CDS |
| AGACTACTGGTGGAACAAGC+TGG | 0.549005 | 5_3:-46729838 | Msa0814550:CDS |
| TAACCTTACCAGACAAAGCT+GGG | 0.549034 | 5_3:+46730067 | None:intergenic |
| GTGCATCCAGGACGATGCCT+CGG | 0.549949 | 5_3:+46726827 | None:intergenic |
| TACTTTCTCGATACTGGCCA+AGG | 0.550936 | 5_3:-46729333 | Msa0814550:CDS |
| GTTGTTGAGCCTAGTGCTGC+GGG | 0.553930 | 5_3:-46726545 | Msa0814550:CDS |
| GTCATATTAAAACAACTGCA+GGG | 0.556085 | 5_3:-46726447 | Msa0814550:three_prime_UTR |
| CCGGCGCTTAAGAGTCTCAC+AGG | 0.559293 | 5_3:+46726739 | None:intergenic |
| CAACTGGTGAATGGAAGAAA+GGG | 0.559758 | 5_3:-46731484 | Msa0814550:CDS |
| TGTAGTGCCCTTATTTGAGA+AGG | 0.560033 | 5_3:-46728886 | Msa0814550:CDS |
| ATTGACTTCTGTTGTTACAC+AGG | 0.561453 | 5_3:-46728382 | Msa0814550:intron |
| TCCAATTGTCCCGCAGCACT+AGG | 0.562994 | 5_3:+46726536 | None:intergenic |
| TCCATCCAGTTTCATGACGG+TGG | 0.564496 | 5_3:+46730302 | None:intergenic |
| AATTGCAAGGACTGTATGCA+AGG | 0.565036 | 5_3:+46728555 | None:intergenic |
| ACTATACATCCACTGTGGAT+AGG | 0.566036 | 5_3:+46730155 | None:intergenic |
| GGAAAATAATAGACCAACAT+GGG | 0.566824 | 5_3:-46729620 | Msa0814550:CDS |
| TTATTTCATTTAGGAACCCC+CGG | 0.568626 | 5_3:-46727743 | Msa0814550:intron |
| AAGGATTACTGATCAAGAGC+TGG | 0.569540 | 5_3:-46729314 | Msa0814550:CDS |
| GCCAAACTCTGCAACAAATG+CGG | 0.571705 | 5_3:-46731437 | Msa0814550:CDS |
| ATCAGACCAGCTCGGTCCAA+AGG | 0.576061 | 5_3:-46727366 | Msa0814550:CDS |
| TCCTCCATCCAGTTTCATGA+CGG | 0.576172 | 5_3:+46730299 | None:intergenic |
| CACACGATACAAGTGCATCC+AGG | 0.576195 | 5_3:+46726815 | None:intergenic |
| TTTGGCCTAATAACAACAGT+AGG | 0.577022 | 5_3:-46728602 | Msa0814550:CDS |
| TTCCCCTTCACATCAGCAGG+TGG | 0.578031 | 5_3:+46729364 | None:intergenic |
| TTCGAGTACCTTGATTTCGG+TGG | 0.580235 | 5_3:-46730119 | Msa0814550:CDS |
| TAAGTGTCAATTCAACAAAG+AGG | 0.581056 | 5_3:-46729701 | Msa0814550:CDS |
| CTTACCAGACAAAGCTGGGA+GGG | 0.582135 | 5_3:+46730071 | None:intergenic |
| ACATCAGCAGGTGGCCGGCG+TGG | 0.583280 | 5_3:+46729373 | None:intergenic |
| CCTGTGAGACTCTTAAGCGC+CGG | 0.585911 | 5_3:-46726739 | Msa0814550:CDS |
| GCTTAAAACTGCACATAGTG+AGG | 0.592237 | 5_3:-46728067 | Msa0814550:CDS |
| CCTAATGAGTTCAAATTCTG+AGG | 0.592495 | 5_3:+46728189 | None:intergenic |
| CATTTAGTCGGATAGATCCT+GGG | 0.593309 | 5_3:-46728434 | Msa0814550:CDS |
| CTTTCACTAAAGATGGCTCT+AGG | 0.593793 | 5_3:-46729574 | Msa0814550:CDS |
| ACAAGCTCAAAGAGATGGCA+TGG | 0.595112 | 5_3:-46729755 | Msa0814550:CDS |
| GGTTGTTGAGCCTAGTGCTG+CGG | 0.595679 | 5_3:-46726546 | Msa0814550:CDS |
| ACAAGTCACTCAACGGATGA+GGG | 0.597566 | 5_3:-46726593 | Msa0814550:CDS |
| ATAGATGAAGCAGGTACTAG+TGG | 0.598221 | 5_3:-46726635 | Msa0814550:CDS |
| CTGGTGGAACAAGCTGGCAA+AGG | 0.598804 | 5_3:-46729832 | Msa0814550:CDS |
| TATTGATGGTAGACTACTGG+TGG | 0.600333 | 5_3:-46729848 | Msa0814550:CDS |
| GGCCACCTGCTGATGTGAAG+GGG | 0.601780 | 5_3:-46729366 | Msa0814550:CDS |
| TGGTCACAAGCTCAAAGAGA+TGG | 0.603653 | 5_3:-46729760 | Msa0814550:CDS |
| CAGGCAAGGCAAGTGCATGT+CGG | 0.603970 | 5_3:+46726758 | None:intergenic |
| ACATATTGATGGTAGACTAC+TGG | 0.604398 | 5_3:-46729851 | Msa0814550:CDS |
| TCCACCGTCATGAAACTGGA+TGG | 0.604497 | 5_3:-46730303 | Msa0814550:CDS |
| ATTGCAAGGACTGTATGCAA+GGG | 0.607548 | 5_3:+46728556 | None:intergenic |
| ATATTGGGACGAAAACTAAG+AGG | 0.609627 | 5_3:-46727981 | Msa0814550:CDS |
| AAGATATAATGGGGAACGAG+TGG | 0.614024 | 5_3:-46728641 | Msa0814550:CDS |
| AGTAGGATGTATGTATTGGA+GGG | 0.615364 | 5_3:-46728585 | Msa0814550:CDS |
| GCTTAAGAGTCTCACAGGCA+AGG | 0.617723 | 5_3:+46726744 | None:intergenic |
| CCTAAATGGAGGTCAGCTTG+AGG | 0.620594 | 5_3:-46726567 | Msa0814550:CDS |
| TTGTGTAGAATTGGTGAAGT+CGG | 0.620883 | 5_3:-46729796 | Msa0814550:CDS |
| TACAGTTCCAAGATATAATG+GGG | 0.621280 | 5_3:-46728650 | Msa0814550:CDS |
| TTGGCCACTGAGATTGGAGA+AGG | 0.621905 | 5_3:-46729523 | Msa0814550:CDS |
| AAACCAGTGCCTCTCCATCA+GGG | 0.622368 | 5_3:-46727705 | Msa0814550:intron |
| TCTACATCTTCTCATTCTAA+CGG | 0.622522 | 5_3:-46728246 | Msa0814550:CDS |
| ACAAGATACAAGTCACTCAA+CGG | 0.624174 | 5_3:-46726600 | Msa0814550:CDS |
| CAGCTGACGACGACTCGTCA+GGG | 0.628337 | 5_3:+46726867 | None:intergenic |
| TGATCTCTCATCCACCACGC+CGG | 0.630532 | 5_3:-46729387 | Msa0814550:CDS |
| ATAATCTTACCCTGATGGAG+AGG | 0.631070 | 5_3:+46727696 | None:intergenic |
| TCATATTAAAACAACTGCAG+GGG | 0.638836 | 5_3:-46726446 | Msa0814550:three_prime_UTR |
| GATGAAGCAGGTACTAGTGG+TGG | 0.639251 | 5_3:-46726632 | Msa0814550:CDS |
| ATTCAACCACCAAGTGGACA+GGG | 0.641900 | 5_3:-46726791 | Msa0814550:CDS |
| AAGTCGGTGAATCAAGCCGT+TGG | 0.642223 | 5_3:-46729780 | Msa0814550:CDS |
| GGTTCTGCATCAGACCAGCT+CGG | 0.642711 | 5_3:-46727374 | Msa0814550:CDS |
| TGGAAAATAATAGACCAACA+TGG | 0.644227 | 5_3:-46729621 | Msa0814550:CDS |
| CTGGTGAATGGAAGAAAGGG+TGG | 0.646177 | 5_3:-46731481 | Msa0814550:CDS |
| TTTGGCTTGACACTAGGCGG+CGG | 0.654279 | 5_3:+46727889 | None:intergenic |
| GAATTGAAGAGATTAGGTAG+TGG | 0.654585 | 5_3:-46726336 | Msa0814550:three_prime_UTR |
| GTGTGCATTCAACCACCAAG+TGG | 0.657426 | 5_3:-46726797 | Msa0814550:CDS |
| TCTCCAATCTCAGTGGCCAA+CGG | 0.657815 | 5_3:+46729526 | None:intergenic |
| CCTTCTGATTGCAAAATACG+AGG | 0.659510 | 5_3:+46728681 | None:intergenic |
| TTGCAAGGACTGTATGCAAG+GGG | 0.665717 | 5_3:+46728557 | None:intergenic |
| ATATTTGGCTTGACACTAGG+CGG | 0.666538 | 5_3:+46727886 | None:intergenic |
| GTTAGAATGAGAAGATGTAG+AGG | 0.666828 | 5_3:+46728248 | None:intergenic |
| TAAAACTGCACATAGTGAGG+AGG | 0.667263 | 5_3:-46728064 | Msa0814550:CDS |
| GAAATGCAGCAATTGCAGCA+AGG | 0.667427 | 5_3:-46730278 | Msa0814550:intron |
| GATTGGAGAAGGTAAACTTG+AGG | 0.667659 | 5_3:-46729512 | Msa0814550:CDS |
| AAGAGCTGGAGAAATTGTCG+GGG | 0.668493 | 5_3:-46729300 | Msa0814550:CDS |
| TTAATCTTTCCGAAAACCGG+GGG | 0.672825 | 5_3:+46727727 | None:intergenic |
| ACCGTCATGAAACTGGATGG+AGG | 0.674066 | 5_3:-46730300 | Msa0814550:CDS |
| TTTAATCTTTCCGAAAACCG+GGG | 0.679300 | 5_3:+46727726 | None:intergenic |
| AGTGAGGAGGAAATGAACAA+TGG | 0.681817 | 5_3:-46728051 | Msa0814550:CDS |
| TATGGAATTGAGACTTACAT+GGG | 0.685466 | 5_3:-46727935 | Msa0814550:CDS |
| AAGCTGGGAGGGCTTAACAC+AGG | 0.686823 | 5_3:+46730082 | None:intergenic |
| GCTCCCTAAAGCGTGTGCTG+AGG | 0.692281 | 5_3:-46728823 | Msa0814550:intron |
| GAATCACCACAAAACATCCG+AGG | 0.699635 | 5_3:-46726844 | Msa0814550:CDS |
| TTTACCTTCTCCAATCTCAG+TGG | 0.700030 | 5_3:+46729519 | None:intergenic |
| TCAATCAATGAAAGGTAACG+GGG | 0.707345 | 5_3:-46728148 | Msa0814550:CDS |
| CCTTACCAGACAAAGCTGGG+AGG | 0.709735 | 5_3:+46730070 | None:intergenic |
| GATGAGGGAAGCCTAAATGG+AGG | 0.710836 | 5_3:-46726578 | Msa0814550:CDS |
| AGAGCTGGAGAAATTGTCGG+GGG | 0.721199 | 5_3:-46729299 | Msa0814550:CDS |
| TTGATACTATACATCCACTG+TGG | 0.738079 | 5_3:+46730150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATTTCAATATCAA+AGG | + | chr5_3:46727792-46727811 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTATTTCATTT+AGG | - | chr5_3:46730233-46730252 | Msa0814550:intron | 10.0% |
| !!! | TACATATATCTAAATATTTT+TGG | - | chr5_3:46730809-46730828 | Msa0814550:intron | 10.0% |
| !!! | ACATATATCTAAATATTTTT+GGG | - | chr5_3:46730810-46730829 | Msa0814550:intron | 10.0% |
| !!! | ATTTCACAATGTTATAATTT+TGG | - | chr5_3:46726633-46726652 | Msa0814550:CDS | 15.0% |
| !!! | TTTCACAATGTTATAATTTT+GGG | - | chr5_3:46726634-46726653 | Msa0814550:CDS | 15.0% |
| !! | TCTTAAATATAAGTAAAAGT+TGG | + | chr5_3:46727030-46727049 | None:intergenic | 15.0% |
| !!! | ACTTTTACTTATATTTAAGA+CGG | - | chr5_3:46727030-46727049 | Msa0814550:intron | 15.0% |
| !!! | CAATTTTTTTTTAGAAAACT+TGG | + | chr5_3:46727350-46727369 | None:intergenic | 15.0% |
| !!! | CAAGTTTTCTAAAAAAAAAT+TGG | - | chr5_3:46727348-46727367 | Msa0814550:CDS | 15.0% |
| !! | AGAATCAAATAACAAAATTT+CGG | + | chr5_3:46727979-46727998 | None:intergenic | 15.0% |
| !!! | AATGATATATTTTGGATTTT+TGG | - | chr5_3:46730176-46730195 | Msa0814550:intron | 15.0% |
| !!! | TATGATTAATTTGATTGTTT+TGG | + | chr5_3:46731331-46731350 | None:intergenic | 15.0% |
| !!! | TTTTACTTCATTTTTCATTT+TGG | - | chr5_3:46731621-46731640 | Msa0814550:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTCTTGTTGTAG+TGG | - | chr5_3:46726305-46726324 | Msa0814550:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTCTTGTTGTAGT+GGG | - | chr5_3:46726306-46726325 | Msa0814550:three_prime_UTR | 20.0% |
| !! | GTGTATGAATAATTATTGTA+AGG | - | chr5_3:46726472-46726491 | Msa0814550:CDS | 20.0% |
| !! | ATGAATAATTATTGTAAGGA+AGG | - | chr5_3:46726476-46726495 | Msa0814550:CDS | 20.0% |
| !!! | TTCACAATGTTATAATTTTG+GGG | - | chr5_3:46726635-46726654 | Msa0814550:CDS | 20.0% |
| !!! | TTGATCCAAATTGATAATTT+TGG | - | chr5_3:46726680-46726699 | Msa0814550:CDS | 20.0% |
| !!! | TGATCCAAATTGATAATTTT+GGG | - | chr5_3:46726681-46726700 | Msa0814550:CDS | 20.0% |
| !! | AAATCCCAAAATTATCAATT+TGG | + | chr5_3:46726688-46726707 | None:intergenic | 20.0% |
| !!! | CTTTTACTTATATTTAAGAC+GGG | - | chr5_3:46727031-46727050 | Msa0814550:intron | 20.0% |
| !! | TTCAAATCAAACATATGTTT+AGG | - | chr5_3:46727517-46727536 | Msa0814550:intron | 20.0% |
| !! | GAATCAAATAACAAAATTTC+GGG | + | chr5_3:46727978-46727997 | None:intergenic | 20.0% |
| !!! | TATCATTGAATGTTTTTCTA+TGG | - | chr5_3:46728040-46728059 | Msa0814550:CDS | 20.0% |
| !! | ATAATAGACCAAAATACTAA+GGG | + | chr5_3:46729005-46729024 | None:intergenic | 20.0% |
| !! | TATAATAGACCAAAATACTA+AGG | + | chr5_3:46729006-46729025 | None:intergenic | 20.0% |
| !! | AACTGAGATAATAATGTTAA+GGG | + | chr5_3:46729069-46729088 | None:intergenic | 20.0% |
| !! | AAACTGAGATAATAATGTTA+AGG | + | chr5_3:46729070-46729089 | None:intergenic | 20.0% |
| !! | AAAGTTATCATCAATTGATA+TGG | - | chr5_3:46729508-46729527 | Msa0814550:CDS | 20.0% |
| !!! | AATTTCTATTTGGTTTTAGA+AGG | - | chr5_3:46729578-46729597 | Msa0814550:CDS | 20.0% |
| !!! | AAACTGTGAATGATATATTT+TGG | - | chr5_3:46730168-46730187 | Msa0814550:intron | 20.0% |
| !! | ATAAATAAAAAACATAAGCC+AGG | + | chr5_3:46730226-46730245 | None:intergenic | 20.0% |
| !! | ATTATTCTTATTATGTACTG+TGG | - | chr5_3:46730573-46730592 | Msa0814550:intron | 20.0% |
| !! | TAATTAAGTACTAGTTATCA+AGG | + | chr5_3:46730949-46730968 | None:intergenic | 20.0% |
| !! | GTTAAGGAGAAATATAAAAT+TGG | + | chr5_3:46731679-46731698 | None:intergenic | 20.0% |
| !!! | TTTTTGGGTTTTGATTTCTA+GGG | - | chr5_3:46726383-46726402 | Msa0814550:three_prime_UTR | 25.0% |
| !!! | AGAGGGATTGATTTTATTTT+GGG | - | chr5_3:46726426-46726445 | Msa0814550:three_prime_UTR | 25.0% |
| !!! | TTATTTTGGGTTTTGTTCAA+TGG | - | chr5_3:46726439-46726458 | Msa0814550:three_prime_UTR | 25.0% |
| !!! | TATTTTGGGTTTTGTTCAAT+GGG | - | chr5_3:46726440-46726459 | Msa0814550:three_prime_UTR | 25.0% |
| !!! | ATTGATAATTTTGGGATTTG+AGG | - | chr5_3:46726689-46726708 | Msa0814550:CDS | 25.0% |
| ! | AATACAACTTCAAATATGAG+TGG | + | chr5_3:46726857-46726876 | None:intergenic | 25.0% |
| !!! | CTTTTGCTTATATTTAAGAC+CGG | + | chr5_3:46726960-46726979 | None:intergenic | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr5_3:46727007-46727026 | None:intergenic | 25.0% |
| ! | AATTATAGAGTGAACAGAAA+GGG | + | chr5_3:46727083-46727102 | None:intergenic | 25.0% |
| ! | ACATTAAGATAATCATTTGC+AGG | + | chr5_3:46727132-46727151 | None:intergenic | 25.0% |
| ! | GAATCTGTAAATTTATGTGT+CGG | + | chr5_3:46728016-46728035 | None:intergenic | 25.0% |
| ! | AGGATACTGAAAATCATAAT+AGG | - | chr5_3:46728067-46728086 | Msa0814550:CDS | 25.0% |
| ! | AATGTAGTAAATGCTGTTAA+AGG | + | chr5_3:46728345-46728364 | None:intergenic | 25.0% |
| ! | TTTAACAGCATTTACTACAT+TGG | - | chr5_3:46728344-46728363 | Msa0814550:intron | 25.0% |
| ! | TTTATTTGTTTCAAGACTCA+TGG | + | chr5_3:46728574-46728593 | None:intergenic | 25.0% |
| ! | ATGAGTCTTGAAACAAATAA+AGG | - | chr5_3:46728573-46728592 | Msa0814550:CDS | 25.0% |
| ! | CAAACAGAACCTAAATATAA+AGG | + | chr5_3:46728717-46728736 | None:intergenic | 25.0% |
| !! | CTTTATATTTAGGTTCTGTT+TGG | - | chr5_3:46728715-46728734 | Msa0814550:intron | 25.0% |
| ! | CAAATTGGTATATGAATTTC+AGG | - | chr5_3:46729273-46729292 | Msa0814550:intron | 25.0% |
| ! | ATTATATCTTGGAACTGTAA+AGG | + | chr5_3:46729334-46729353 | None:intergenic | 25.0% |
| ! | TTTACAGTTCCAAGATATAA+TGG | - | chr5_3:46729333-46729352 | Msa0814550:CDS | 25.0% |
| ! | TTACAGTTCCAAGATATAAT+GGG | - | chr5_3:46729334-46729353 | Msa0814550:CDS | 25.0% |
| ! | TTGTTACAGTAACATTTAGT+CGG | - | chr5_3:46729539-46729558 | Msa0814550:CDS | 25.0% |
| ! | TTAAAGGGTTATCTTTAAAC+AGG | - | chr5_3:46729711-46729730 | Msa0814550:CDS | 25.0% |
| ! | AATCTTCTTCAATCAATGAA+AGG | - | chr5_3:46729829-46729848 | Msa0814550:CDS | 25.0% |
| ! | TCCTCAATTGTTACAATATT+TGG | + | chr5_3:46730117-46730136 | None:intergenic | 25.0% |
| ! | CATCATATTCTTCAAATACT+TGG | + | chr5_3:46730140-46730159 | None:intergenic | 25.0% |
| ! | CTATCATTGTACATATTTGA+AGG | + | chr5_3:46730370-46730389 | None:intergenic | 25.0% |
| ! | TTAGTCCTATTTCAAATGTT+TGG | - | chr5_3:46730485-46730504 | Msa0814550:intron | 25.0% |
| ! | TAGTCCTATTTCAAATGTTT+GGG | - | chr5_3:46730486-46730505 | Msa0814550:intron | 25.0% |
| ! | ATAAAAAAAAAAACGGTAGC+AGG | + | chr5_3:46730682-46730701 | None:intergenic | 25.0% |
| ! | ATTAATCATATAGATGAAGC+AGG | - | chr5_3:46731341-46731360 | Msa0814550:intron | 25.0% |
| !!! | TACTTCATTTTTCATTTTGG+AGG | - | chr5_3:46731624-46731643 | Msa0814550:five_prime_UTR | 25.0% |
| !! | AGTTTACTTTCCTTTTCAAA+AGG | - | chr5_3:46731713-46731732 | Msa0814550:five_prime_UTR | 25.0% |
| TGAATCTTGAATCTTGAAAC+TGG | - | chr5_3:46726262-46726281 | Msa0814550:three_prime_UTR | 30.0% | |
| TGATTTCAACACTAACATTG+AGG | - | chr5_3:46726360-46726379 | Msa0814550:three_prime_UTR | 30.0% | |
| ! | AACACTAACATTGAGGTTTT+TGG | - | chr5_3:46726367-46726386 | Msa0814550:three_prime_UTR | 30.0% |
| ! | ACACTAACATTGAGGTTTTT+GGG | - | chr5_3:46726368-46726387 | Msa0814550:three_prime_UTR | 30.0% |
| !!! | GTTTTTGGGTTTTGATTTCT+AGG | - | chr5_3:46726382-46726401 | Msa0814550:three_prime_UTR | 30.0% |
| !! | GAGAGGGATTGATTTTATTT+TGG | - | chr5_3:46726425-46726444 | Msa0814550:three_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTTTGTTCAATG+GGG | - | chr5_3:46726441-46726460 | Msa0814550:three_prime_UTR | 30.0% |
| TGTTCTTATGAGTTCATGTT+GGG | - | chr5_3:46726722-46726741 | Msa0814550:CDS | 30.0% | |
| ! | TTTCAACCCTTTTTCTTTTC+TGG | - | chr5_3:46726756-46726775 | Msa0814550:CDS | 30.0% |
| ! | TTCAACCCTTTTTCTTTTCT+GGG | - | chr5_3:46726757-46726776 | Msa0814550:CDS | 30.0% |
| AAAACCCCAGAAAAGAAAAA+GGG | + | chr5_3:46726765-46726784 | None:intergenic | 30.0% | |
| CTGATCATTATTTCATCCAA+AGG | + | chr5_3:46726833-46726852 | None:intergenic | 30.0% | |
| CAATTATAGAGTGAACAGAA+AGG | + | chr5_3:46727084-46727103 | None:intergenic | 30.0% | |
| TTACTTTGTGCTCCTTTAAA+GGG | - | chr5_3:46727191-46727210 | Msa0814550:intron | 30.0% | |
| AAGTCCATGTTGCAATTTAT+AGG | - | chr5_3:46727472-46727491 | Msa0814550:intron | 30.0% | |
| AGTCCATGTTGCAATTTATA+GGG | - | chr5_3:46727473-46727492 | Msa0814550:intron | 30.0% | |
| TTACCCTATAAATTGCAACA+TGG | + | chr5_3:46727479-46727498 | None:intergenic | 30.0% | |
| AAATTAAGAATCCGTAAGCA+GGG | + | chr5_3:46727608-46727627 | None:intergenic | 30.0% | |
| TAAATTAAGAATCCGTAAGC+AGG | + | chr5_3:46727609-46727628 | None:intergenic | 30.0% | |
| ACAGAAAAGTGAATTCTCAT+AGG | + | chr5_3:46727655-46727674 | None:intergenic | 30.0% | |
| ! | GAATGTTTTTCTATGGATAC+AGG | - | chr5_3:46728047-46728066 | Msa0814550:CDS | 30.0% |
| GAATTGACACTTAACTTCTT+CGG | + | chr5_3:46728277-46728296 | None:intergenic | 30.0% | |
| TAAGTGTCAATTCAACAAAG+AGG | - | chr5_3:46728284-46728303 | Msa0814550:intron | 30.0% | |
| TGGAAAATAATAGACCAACA+TGG | - | chr5_3:46728364-46728383 | Msa0814550:intron | 30.0% | |
| GGAAAATAATAGACCAACAT+GGG | - | chr5_3:46728365-46728384 | Msa0814550:intron | 30.0% | |
| ! | CATCTTCTCATTTTCAACAA+GGG | - | chr5_3:46728502-46728521 | Msa0814550:intron | 30.0% |
| CTTATTTCGATAAGTTCTCT+AGG | + | chr5_3:46728874-46728893 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAACTCA+TGG | - | chr5_3:46728888-46728907 | Msa0814550:CDS | 30.0% | |
| AGTTTATCGAAACAGCTTAA+CGG | + | chr5_3:46728919-46728938 | None:intergenic | 30.0% | |
| GAATCAACTTTGCATGTTTA+AGG | + | chr5_3:46729035-46729054 | None:intergenic | 30.0% | |
| CTTAACACCTTCTCAAATAA+GGG | + | chr5_3:46729109-46729128 | None:intergenic | 30.0% | |
| ACTTAACACCTTCTCAAATA+AGG | + | chr5_3:46729110-46729129 | None:intergenic | 30.0% | |
| TACAGTTCCAAGATATAATG+GGG | - | chr5_3:46729335-46729354 | Msa0814550:CDS | 30.0% | |
| ! | TACATCCTACTGTTGTTATT+AGG | + | chr5_3:46729391-46729410 | None:intergenic | 30.0% |
| TCTACATCTTCTCATTCTAA+CGG | - | chr5_3:46729739-46729758 | Msa0814550:CDS | 30.0% | |
| ! | ATAAAGGATCCAAACTTTTC+TGG | - | chr5_3:46729769-46729788 | Msa0814550:CDS | 30.0% |
| CTTCAATCAATGAAAGGTAA+CGG | - | chr5_3:46729835-46729854 | Msa0814550:CDS | 30.0% | |
| TTCAATCAATGAAAGGTAAC+GGG | - | chr5_3:46729836-46729855 | Msa0814550:CDS | 30.0% | |
| TCTGAATGTCCATTTAAGTA+AGG | + | chr5_3:46729865-46729884 | None:intergenic | 30.0% | |
| TTTCAGTTTCAGAGAAAAAG+AGG | - | chr5_3:46729974-46729993 | Msa0814550:intron | 30.0% | |
| TATGGAATTGAGACTTACAT+GGG | - | chr5_3:46730050-46730069 | Msa0814550:intron | 30.0% | |
| GCCAAATATTGTAACAATTG+AGG | - | chr5_3:46730113-46730132 | Msa0814550:CDS | 30.0% | |
| ATCTTCAAATTTCTGTTACC+TGG | - | chr5_3:46730205-46730224 | Msa0814550:intron | 30.0% | |
| ! | TTTTAATCTTTCCGAAAACC+GGG | + | chr5_3:46730263-46730282 | None:intergenic | 30.0% |
| !! | GTTTTAATCTTTCCGAAAAC+CGG | + | chr5_3:46730264-46730283 | None:intergenic | 30.0% |
| ! | ATTATGTACTGTGGTTTTTC+AGG | - | chr5_3:46730582-46730601 | Msa0814550:intron | 30.0% |
| AGTCTTCAAAGAACCAAAAA+AGG | - | chr5_3:46730650-46730669 | Msa0814550:intron | 30.0% | |
| TCTGTAGTAGTCATGTTTAT+CGG | - | chr5_3:46730712-46730731 | Msa0814550:intron | 30.0% | |
| !!! | CTAAATATTTTTGGGATGTG+TGG | - | chr5_3:46730818-46730837 | Msa0814550:intron | 30.0% |
| !! | AGTGCTTTGGAAATAACTTT+AGG | + | chr5_3:46730918-46730937 | None:intergenic | 30.0% |
| TGGAAACTGATACATATAAC+AGG | - | chr5_3:46731501-46731520 | Msa0814550:CDS | 30.0% | |
| ! | TAATATGACTAGTCATGCTT+TGG | + | chr5_3:46731527-46731546 | None:intergenic | 30.0% |
| AGTCATATTAAAACAACTGC+AGG | - | chr5_3:46731537-46731556 | Msa0814550:exon | 30.0% | |
| GTCATATTAAAACAACTGCA+GGG | - | chr5_3:46731538-46731557 | Msa0814550:exon | 30.0% | |
| TCATATTAAAACAACTGCAG+GGG | - | chr5_3:46731539-46731558 | Msa0814550:exon | 30.0% | |
| ! | ACTTTCCTTTTCAAAAGGAA+TGG | - | chr5_3:46731718-46731737 | Msa0814550:five_prime_UTR | 30.0% |
| !! | CTTTACCATTCCTTTTGAAA+AGG | + | chr5_3:46731726-46731745 | None:intergenic | 30.0% |
| TTCAAAAGGAATGGTAAAGA+TGG | - | chr5_3:46731727-46731746 | Msa0814550:five_prime_UTR | 30.0% | |
| !!! | GATTTCTAGGGTTTTGACTT+TGG | - | chr5_3:46726395-46726414 | Msa0814550:three_prime_UTR | 35.0% |
| !!! | TTTTGGGTTTTGTTCAATGG+GGG | - | chr5_3:46726442-46726461 | Msa0814550:three_prime_UTR | 35.0% |
| TATTGTAAGGAAGGTTCAAC+TGG | - | chr5_3:46726485-46726504 | Msa0814550:CDS | 35.0% | |
| GTGTTCTTATGAGTTCATGT+TGG | - | chr5_3:46726721-46726740 | Msa0814550:CDS | 35.0% | |
| ! | TCAACCCTTTTTCTTTTCTG+GGG | - | chr5_3:46726758-46726777 | Msa0814550:CDS | 35.0% |
| GAAAACCCCAGAAAAGAAAA+AGG | + | chr5_3:46726766-46726785 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTCTGGGGTTTTC+AGG | - | chr5_3:46726766-46726785 | Msa0814550:CDS | 35.0% |
| !!! | TTTCTTTTCTGGGGTTTTCA+GGG | - | chr5_3:46726767-46726786 | Msa0814550:CDS | 35.0% |
| GGGTACATTACTTAAACTGA+TGG | + | chr5_3:46727063-46727082 | None:intergenic | 35.0% | |
| TATCTTAATGTGTACCCACT+TGG | - | chr5_3:46727141-46727160 | Msa0814550:intron | 35.0% | |
| CTTACTTTGTGCTCCTTTAA+AGG | - | chr5_3:46727190-46727209 | Msa0814550:intron | 35.0% | |
| AGTCTTGCTCTGACTTTAAA+TGG | - | chr5_3:46727264-46727283 | Msa0814550:intron | 35.0% | |
| GTCTTGCTCTGACTTTAAAT+GGG | - | chr5_3:46727265-46727284 | Msa0814550:intron | 35.0% | |
| !!! | CTTGGTTTTGTTAGTAAGTC+AGG | - | chr5_3:46727437-46727456 | Msa0814550:intron | 35.0% |
| AATTAAGAATCCGTAAGCAG+GGG | + | chr5_3:46727607-46727626 | None:intergenic | 35.0% | |
| TATCAAAGGAGAGAAAGACA+AGG | + | chr5_3:46727778-46727797 | None:intergenic | 35.0% | |
| TTGATACTATACATCCACTG+TGG | + | chr5_3:46727838-46727857 | None:intergenic | 35.0% | |
| AACTTATACCACCGAAATCA+AGG | + | chr5_3:46727877-46727896 | None:intergenic | 35.0% | |
| ! | TTTATGTGTCGGTATCACAA+TGG | + | chr5_3:46728005-46728024 | None:intergenic | 35.0% |
| !!! | CATTGTTTTTGGTCGATTGA+GGG | + | chr5_3:46728095-46728114 | None:intergenic | 35.0% |
| ! | TCGATCACTTGCATTGTTTT+TGG | + | chr5_3:46728106-46728125 | None:intergenic | 35.0% |
| AACAATGCAAGTGATCGATA+TGG | - | chr5_3:46728108-46728127 | Msa0814550:CDS | 35.0% | |
| CGATATGGTGAACATATTGA+TGG | - | chr5_3:46728123-46728142 | Msa0814550:CDS | 35.0% | |
| ! | ACATATTGATGGTAGACTAC+TGG | - | chr5_3:46728134-46728153 | Msa0814550:CDS | 35.0% |
| CAATTCTACACAACTGCATA+AGG | + | chr5_3:46728182-46728201 | None:intergenic | 35.0% | |
| CTTATGCAGTTGTGTAGAAT+TGG | - | chr5_3:46728180-46728199 | Msa0814550:CDS | 35.0% | |
| TTGTGTAGAATTGGTGAAGT+CGG | - | chr5_3:46728189-46728208 | Msa0814550:CDS | 35.0% | |
| ! | ATACTTTTAGTCTCCCATGT+TGG | + | chr5_3:46728381-46728400 | None:intergenic | 35.0% |
| TGAAACGCTTTCACTAAAGA+TGG | - | chr5_3:46728404-46728423 | Msa0814550:CDS | 35.0% | |
| ATTGGAGAAGGTAAACTTGA+GGG | - | chr5_3:46728474-46728493 | Msa0814550:intron | 35.0% | |
| ! | GCATCTTCTCATTTTCAACA+AGG | - | chr5_3:46728501-46728520 | Msa0814550:intron | 35.0% |
| GCAAACATCTCAGTCTATAT+TGG | - | chr5_3:46728524-46728543 | Msa0814550:intron | 35.0% | |
| ! | ATCAGTTACTTTCTCGATAC+TGG | - | chr5_3:46728646-46728665 | Msa0814550:CDS | 35.0% |
| !! | GGGGAGTATCCTTTATATTT+AGG | - | chr5_3:46728705-46728724 | Msa0814550:intron | 35.0% |
| TACACATTTCCCTGTAATTG+CGG | - | chr5_3:46729241-46729260 | Msa0814550:intron | 35.0% | |
| ! | GGACTTTTCAGTTCAGATTT+TGG | - | chr5_3:46729365-46729384 | Msa0814550:CDS | 35.0% |
| TTTGGCCTAATAACAACAGT+AGG | - | chr5_3:46729383-46729402 | Msa0814550:CDS | 35.0% | |
| CAACAGTAGGATGTATGTAT+TGG | - | chr5_3:46729396-46729415 | Msa0814550:CDS | 35.0% | |
| AGTAGGATGTATGTATTGGA+GGG | - | chr5_3:46729400-46729419 | Msa0814550:CDS | 35.0% | |
| ATCACCAGCATTTAATTGCA+AGG | + | chr5_3:46729446-46729465 | None:intergenic | 35.0% | |
| CAATTAAATGCTGGTGATAC+TGG | - | chr5_3:46729448-46729467 | Msa0814550:CDS | 35.0% | |
| ! | CCAAATAGAAATTTGTTCCC+AGG | + | chr5_3:46729571-46729590 | None:intergenic | 35.0% |
| CCTGGGAACAAATTTCTATT+TGG | - | chr5_3:46729568-46729587 | Msa0814550:CDS | 35.0% | |
| ! | ATTGACTTCTGTTGTTACAC+AGG | - | chr5_3:46729603-46729622 | Msa0814550:CDS | 35.0% |
| GTTAGAATGAGAAGATGTAG+AGG | + | chr5_3:46729740-46729759 | None:intergenic | 35.0% | |
| TTCTAACGGCATTTCGATAA+AGG | - | chr5_3:46729753-46729772 | Msa0814550:CDS | 35.0% | |
| CCTAATGAGTTCAAATTCTG+AGG | + | chr5_3:46729799-46729818 | None:intergenic | 35.0% | |
| CCTCAGAATTTGAACTCATT+AGG | - | chr5_3:46729796-46729815 | Msa0814550:CDS | 35.0% | |
| TCAATCAATGAAAGGTAACG+GGG | - | chr5_3:46729837-46729856 | Msa0814550:CDS | 35.0% | |
| ACATTCAGAACATCTGTGTT+TGG | - | chr5_3:46729876-46729895 | Msa0814550:CDS | 35.0% | |
| CATTCAGAACATCTGTGTTT+GGG | - | chr5_3:46729877-46729896 | Msa0814550:CDS | 35.0% | |
| AAAAAGAGGTCTCGCAATAT+TGG | - | chr5_3:46729988-46730007 | Msa0814550:intron | 35.0% | |
| AAAAGAGGTCTCGCAATATT+GGG | - | chr5_3:46729989-46730008 | Msa0814550:intron | 35.0% | |
| ATATTGGGACGAAAACTAAG+AGG | - | chr5_3:46730004-46730023 | Msa0814550:intron | 35.0% | |
| CTATGGAATTGAGACTTACA+TGG | - | chr5_3:46730049-46730068 | Msa0814550:intron | 35.0% | |
| !! | ACAATATTTGGCTTGACACT+AGG | + | chr5_3:46730105-46730124 | None:intergenic | 35.0% |
| TTATTTCATTTAGGAACCCC+CGG | - | chr5_3:46730242-46730261 | Msa0814550:intron | 35.0% | |
| TTTAATCTTTCCGAAAACCG+GGG | + | chr5_3:46730262-46730281 | None:intergenic | 35.0% | |
| GGTATATAATCTTACCCTGA+TGG | + | chr5_3:46730297-46730316 | None:intergenic | 35.0% | |
| ! | GCATCCCAAACATTTGAAAT+AGG | + | chr5_3:46730493-46730512 | None:intergenic | 35.0% |
| TGAAGACTTTCTTGTTCCTT+TGG | + | chr5_3:46730638-46730657 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGATGTGTGGAT+TGG | - | chr5_3:46730823-46730842 | Msa0814550:intron | 35.0% |
| AGCAAGCACAGAATTTAACA+AGG | + | chr5_3:46730867-46730886 | None:intergenic | 35.0% | |
| !!! | TCGCTTCTTTTTAGAATCTG+CGG | + | chr5_3:46731003-46731022 | None:intergenic | 35.0% |
| ATTCAAGAACACAAGCTTTC+AGG | - | chr5_3:46731047-46731066 | Msa0814550:intron | 35.0% | |
| ATTGCTTAAAACTGCTGCAT+TGG | + | chr5_3:46731087-46731106 | None:intergenic | 35.0% | |
| ! | TTTTCTTCTTACGCATCGTA+AGG | + | chr5_3:46731280-46731299 | None:intergenic | 35.0% |
| CAACTGCTTCAGATTCTAAT+TGG | + | chr5_3:46731304-46731323 | None:intergenic | 35.0% | |
| ACAAGATACAAGTCACTCAA+CGG | - | chr5_3:46731385-46731404 | Msa0814550:intron | 35.0% | |
| GTTTCCATTTCTTCATGACT+GGG | + | chr5_3:46731488-46731507 | None:intergenic | 35.0% | |
| AGTTTCCATTTCTTCATGAC+TGG | + | chr5_3:46731489-46731508 | None:intergenic | 35.0% | |
| GAATTGAAGAGATTAGGTAG+TGG | - | chr5_3:46731649-46731668 | Msa0814550:five_prime_UTR | 35.0% | |
| CTAACTAAACTGTGCAGTTA+AGG | + | chr5_3:46731695-46731714 | None:intergenic | 35.0% | |
| !!! | CTAGGGTTTTGACTTTGGAT+TGG | - | chr5_3:46726400-46726419 | Msa0814550:three_prime_UTR | 40.0% |
| ! | TTGACTTTGGATTGGAAGAG+AGG | - | chr5_3:46726408-46726427 | Msa0814550:three_prime_UTR | 40.0% |
| ! | TGACTTTGGATTGGAAGAGA+GGG | - | chr5_3:46726409-46726428 | Msa0814550:three_prime_UTR | 40.0% |
| TCAACTGGTGAATGGAAGAA+AGG | - | chr5_3:46726500-46726519 | Msa0814550:CDS | 40.0% | |
| CAACTGGTGAATGGAAGAAA+GGG | - | chr5_3:46726501-46726520 | Msa0814550:CDS | 40.0% | |
| ACGCGTAAATGCACAGTTAT+AGG | + | chr5_3:46726797-46726816 | None:intergenic | 40.0% | |
| TGTCAACGAATCTCAGTTCT+TGG | + | chr5_3:46726919-46726938 | None:intergenic | 40.0% | |
| TTAATGTGTACCCACTTGGT+TGG | - | chr5_3:46727145-46727164 | Msa0814550:intron | 40.0% | |
| AGTCAGAGCAAGACTTTGTA+TGG | + | chr5_3:46727259-46727278 | None:intergenic | 40.0% | |
| !! | CTTTACCTGCTTTTGTTCTG+AGG | - | chr5_3:46727411-46727430 | Msa0814550:intron | 40.0% |
| AGAAACCTCAGAACAAAAGC+AGG | + | chr5_3:46727419-46727438 | None:intergenic | 40.0% | |
| !!! | GCTTTTGTTCTGAGGTTTCT+TGG | - | chr5_3:46727419-46727438 | Msa0814550:intron | 40.0% |
| AATTGACTATCCCCTGCTTA+CGG | - | chr5_3:46727594-46727613 | Msa0814550:intron | 40.0% | |
| AAATTCCACCGTCATGAAAC+TGG | - | chr5_3:46727678-46727697 | Msa0814550:intron | 40.0% | |
| ACTATACATCCACTGTGGAT+AGG | + | chr5_3:46727833-46727852 | None:intergenic | 40.0% | |
| TCGTTCGAGTACCTTGATTT+CGG | - | chr5_3:46727863-46727882 | Msa0814550:CDS | 40.0% | |
| TAACCTTACCAGACAAAGCT+GGG | + | chr5_3:46727921-46727940 | None:intergenic | 40.0% | |
| TTAACCTTACCAGACAAAGC+TGG | + | chr5_3:46727922-46727941 | None:intergenic | 40.0% | |
| !!! | GCATTGTTTTTGGTCGATTG+AGG | + | chr5_3:46728096-46728115 | None:intergenic | 40.0% |
| ! | TATTGATGGTAGACTACTGG+TGG | - | chr5_3:46728137-46728156 | Msa0814550:CDS | 40.0% |
| GATGGCATGGTTTCATGTAT+TGG | - | chr5_3:46728243-46728262 | Msa0814550:CDS | 40.0% | |
| CACTTAACTTCTTCGGTCTT+TGG | + | chr5_3:46728270-46728289 | None:intergenic | 40.0% | |
| CTTTCACTAAAGATGGCTCT+AGG | - | chr5_3:46728411-46728430 | Msa0814550:CDS | 40.0% | |
| AAGAAATTCTGTTCTGCCGT+TGG | - | chr5_3:46728443-46728462 | Msa0814550:intron | 40.0% | |
| TTTACCTTCTCCAATCTCAG+TGG | + | chr5_3:46728469-46728488 | None:intergenic | 40.0% | |
| GATTGGAGAAGGTAAACTTG+AGG | - | chr5_3:46728473-46728492 | Msa0814550:intron | 40.0% | |
| TTGGCTCAACTATCAAAGAC+TGG | - | chr5_3:46728543-46728562 | Msa0814550:CDS | 40.0% | |
| AGCTCTTGATCAGTAATCCT+TGG | + | chr5_3:46728672-46728691 | None:intergenic | 40.0% | |
| AAGGATTACTGATCAAGAGC+TGG | - | chr5_3:46728671-46728690 | Msa0814550:CDS | 40.0% | |
| TCAAGAGCTGGAGAAATTGT+CGG | - | chr5_3:46728683-46728702 | Msa0814550:CDS | 40.0% | |
| ! | CAAAATACTAAGGGCTTGCT+AGG | + | chr5_3:46728996-46729015 | None:intergenic | 40.0% |
| ! | CTAGCAAGCCCTTAGTATTT+TGG | - | chr5_3:46728994-46729013 | Msa0814550:intron | 40.0% |
| ! | TGTAGTGCCCTTATTTGAGA+AGG | - | chr5_3:46729099-46729118 | Msa0814550:intron | 40.0% |
| TCATACATGCCGCAATTACA+GGG | + | chr5_3:46729253-46729272 | None:intergenic | 40.0% | |
| TTGCGGCATGTATGACAAAT+TGG | - | chr5_3:46729258-46729277 | Msa0814550:intron | 40.0% | |
| CCTTCTGATTGCAAAATACG+AGG | + | chr5_3:46729307-46729326 | None:intergenic | 40.0% | |
| ! | CCTCGTATTTTGCAATCAGA+AGG | - | chr5_3:46729304-46729323 | Msa0814550:CDS | 40.0% |
| ACTCGTTCCCCATTATATCT+TGG | + | chr5_3:46729345-46729364 | None:intergenic | 40.0% | |
| ! | AAGATATAATGGGGAACGAG+TGG | - | chr5_3:46729344-46729363 | Msa0814550:CDS | 40.0% |
| CAGTAGGATGTATGTATTGG+AGG | - | chr5_3:46729399-46729418 | Msa0814550:CDS | 40.0% | |
| ATTGCAAGGACTGTATGCAA+GGG | + | chr5_3:46729432-46729451 | None:intergenic | 40.0% | |
| AATTGCAAGGACTGTATGCA+AGG | + | chr5_3:46729433-46729452 | None:intergenic | 40.0% | |
| CAGTCCTTGCAATTAAATGC+TGG | - | chr5_3:46729439-46729458 | Msa0814550:CDS | 40.0% | |
| ACATTTAGTCGGATAGATCC+TGG | - | chr5_3:46729550-46729569 | Msa0814550:CDS | 40.0% | |
| CATTTAGTCGGATAGATCCT+GGG | - | chr5_3:46729551-46729570 | Msa0814550:CDS | 40.0% | |
| AACGGGGAACCTTACTTAAA+TGG | - | chr5_3:46729853-46729872 | Msa0814550:CDS | 40.0% | |
| GAACATCTGTGTTTGGGTAA+TGG | - | chr5_3:46729883-46729902 | Msa0814550:CDS | 40.0% | |
| GCTTAAAACTGCACATAGTG+AGG | - | chr5_3:46729918-46729937 | Msa0814550:CDS | 40.0% | |
| TAAAACTGCACATAGTGAGG+AGG | - | chr5_3:46729921-46729940 | Msa0814550:intron | 40.0% | |
| AGTGAGGAGGAAATGAACAA+TGG | - | chr5_3:46729934-46729953 | Msa0814550:intron | 40.0% | |
| CATTCATAGCGAAGATGCTA+TGG | - | chr5_3:46730032-46730051 | Msa0814550:intron | 40.0% | |
| !! | ATATTTGGCTTGACACTAGG+CGG | + | chr5_3:46730102-46730121 | None:intergenic | 40.0% |
| TTAATCTTTCCGAAAACCGG+GGG | + | chr5_3:46730261-46730280 | None:intergenic | 40.0% | |
| ATAATCTTACCCTGATGGAG+AGG | + | chr5_3:46730292-46730311 | None:intergenic | 40.0% | |
| ! | CTGATAGTGCTAAATGTGCA+AGG | + | chr5_3:46730318-46730337 | None:intergenic | 40.0% |
| GCAGACAGGTCAACATTATT+CGG | - | chr5_3:46730511-46730530 | Msa0814550:intron | 40.0% | |
| !!! | TAGCAGGATCGTACCTTTTT+TGG | + | chr5_3:46730666-46730685 | None:intergenic | 40.0% |
| GTTTATCGGAACAGAGTTAG+AGG | - | chr5_3:46730726-46730745 | Msa0814550:intron | 40.0% | |
| ATAGATGAAGCAGGTACTAG+TGG | - | chr5_3:46731350-46731369 | Msa0814550:intron | 40.0% | |
| TCATCCCAGTCATGAAGAAA+TGG | - | chr5_3:46731481-46731500 | Msa0814550:CDS | 40.0% | |
| GAGGCAGAATTGAAGAGATT+AGG | - | chr5_3:46731643-46731662 | Msa0814550:five_prime_UTR | 40.0% | |
| AGGAAGGTTCAACTGGTGAA+TGG | - | chr5_3:46726492-46726511 | Msa0814550:CDS | 45.0% | |
| AAAGGGTGGTCTTTGATCTC+TGG | - | chr5_3:46726518-46726537 | Msa0814550:CDS | 45.0% | |
| GCCAAACTCTGCAACAAATG+CGG | - | chr5_3:46726548-46726567 | Msa0814550:CDS | 45.0% | |
| CCAAACTCTGCAACAAATGC+GGG | - | chr5_3:46726549-46726568 | Msa0814550:CDS | 45.0% | |
| CGTGTTTGAATCTCGACCTT+TGG | - | chr5_3:46726814-46726833 | Msa0814550:CDS | 45.0% | |
| ! | TTGTGCTCCTTTAAAGGGCT+CGG | - | chr5_3:46727196-46727215 | Msa0814550:intron | 45.0% |
| ATCAAACCCGAGCCCTTTAA+AGG | + | chr5_3:46727206-46727225 | None:intergenic | 45.0% | |
| ! | ATTCCCTCTGATGCCAGTTT+TGG | - | chr5_3:46727224-46727243 | Msa0814550:intron | 45.0% |
| ! | ATTGGACCCCTAGGATTAGT+CGG | - | chr5_3:46727310-46727329 | Msa0814550:intron | 45.0% |
| TCCTCCATCCAGTTTCATGA+CGG | + | chr5_3:46727689-46727708 | None:intergenic | 45.0% | |
| GAAATGCAGCAATTGCAGCA+AGG | - | chr5_3:46727707-46727726 | Msa0814550:CDS | 45.0% | |
| ! | TTTTTGCAGCCTATCCACAG+TGG | - | chr5_3:46727821-46727840 | Msa0814550:intron | 45.0% |
| TTCGAGTACCTTGATTTCGG+TGG | - | chr5_3:46727866-46727885 | Msa0814550:CDS | 45.0% | |
| ! | ATGTGTCGGTATCACAATGG+CGG | + | chr5_3:46728002-46728021 | None:intergenic | 45.0% |
| CTCTTTGAGCTTGTGACCAA+CGG | + | chr5_3:46728224-46728243 | None:intergenic | 45.0% | |
| TGGTCACAAGCTCAAAGAGA+TGG | - | chr5_3:46728225-46728244 | Msa0814550:CDS | 45.0% | |
| ACAAGCTCAAAGAGATGGCA+TGG | - | chr5_3:46728230-46728249 | Msa0814550:CDS | 45.0% | |
| ! | TTTTTCCCCTTCACATCAGC+AGG | + | chr5_3:46728627-46728646 | None:intergenic | 45.0% |
| TACTTTCTCGATACTGGCCA+AGG | - | chr5_3:46728652-46728671 | Msa0814550:CDS | 45.0% | |
| CAAGAGCTGGAGAAATTGTC+GGG | - | chr5_3:46728684-46728703 | Msa0814550:CDS | 45.0% | |
| AAGAGCTGGAGAAATTGTCG+GGG | - | chr5_3:46728685-46728704 | Msa0814550:CDS | 45.0% | |
| ATACCTCAGCACACGCTTTA+GGG | + | chr5_3:46729168-46729187 | None:intergenic | 45.0% | |
| TATACCTCAGCACACGCTTT+AGG | + | chr5_3:46729169-46729188 | None:intergenic | 45.0% | |
| GTCATACATGCCGCAATTAC+AGG | + | chr5_3:46729254-46729273 | None:intergenic | 45.0% | |
| TTGCAAGGACTGTATGCAAG+GGG | + | chr5_3:46729431-46729450 | None:intergenic | 45.0% | |
| TGAGGTGCACCAGAAAAGTT+TGG | + | chr5_3:46729781-46729800 | None:intergenic | 45.0% | |
| !! | TGGGTAATGGAACTGCTGAT+TGG | - | chr5_3:46729896-46729915 | Msa0814550:CDS | 45.0% |
| ACTGAAACCAGTTGCTGCAA+TGG | + | chr5_3:46729961-46729980 | None:intergenic | 45.0% | |
| ! | ATTTAGGAACCCCCGGTTTT+CGG | - | chr5_3:46730249-46730268 | Msa0814550:intron | 45.0% |
| ! | CAAATGTTTGGGATGCAGAC+AGG | - | chr5_3:46730497-46730516 | Msa0814550:intron | 45.0% |
| !!! | CTGTGGTTTTTCAGGTCTTC+AGG | - | chr5_3:46730590-46730609 | Msa0814550:intron | 45.0% |
| CAAGGACTACTTCAGTGCTT+TGG | + | chr5_3:46730931-46730950 | None:intergenic | 45.0% | |
| GAATCACCACAAAACATCCG+AGG | - | chr5_3:46731141-46731160 | Msa0814550:intron | 45.0% | |
| ATTCAACCACCAAGTGGACA+GGG | - | chr5_3:46731194-46731213 | Msa0814550:intron | 45.0% | |
| ! | TCATGTTTTCCCTGTCCACT+TGG | + | chr5_3:46731206-46731225 | None:intergenic | 45.0% |
| TACAAGTCACTCAACGGATG+AGG | - | chr5_3:46731391-46731410 | Msa0814550:intron | 45.0% | |
| ACAAGTCACTCAACGGATGA+GGG | - | chr5_3:46731392-46731411 | Msa0814550:intron | 45.0% | |
| !!! | ATTTTTGAAAATATAATTAA+AGG | - | chr5_3:46729695-46729714 | Msa0814550:CDS | 5.0% |
| !!! | TTTTTGAAAATATAATTAAA+GGG | - | chr5_3:46729696-46729715 | Msa0814550:CDS | 5.0% |
| !! | AAATATCTTATAATATATAT+TGG | - | chr5_3:46730403-46730422 | Msa0814550:intron | 5.0% |
| !! | TGTATAAATAAAAAAAAAAA+CGG | + | chr5_3:46730689-46730708 | None:intergenic | 5.0% |
| !!! | TAATTAATTCTTATATTTTA+TGG | - | chr5_3:46730963-46730982 | Msa0814550:intron | 5.0% |
| CTGGTGAATGGAAGAAAGGG+TGG | - | chr5_3:46726504-46726523 | Msa0814550:CDS | 50.0% | |
| GGTGGTCTTTGATCTCTGGT+GGG | - | chr5_3:46726522-46726541 | Msa0814550:CDS | 50.0% | |
| ! | CCCGCATTTGTTGCAGAGTT+TGG | + | chr5_3:46726552-46726571 | None:intergenic | 50.0% |
| ACTGAGATTCGTTGACAGCG+TGG | - | chr5_3:46726922-46726941 | Msa0814550:CDS | 50.0% | |
| ! | TGTGCTCCTTTAAAGGGCTC+GGG | - | chr5_3:46727197-46727216 | Msa0814550:intron | 50.0% |
| CCACCAAAACTGGCATCAGA+GGG | + | chr5_3:46727230-46727249 | None:intergenic | 50.0% | |
| !! | CCTCTGATGCCAGTTTTGGT+GGG | - | chr5_3:46727228-46727247 | Msa0814550:intron | 50.0% |
| !! | ATGGACTAGCCCACCAAAAC+TGG | + | chr5_3:46727240-46727259 | None:intergenic | 50.0% |
| CAGTGACCGACTAATCCTAG+GGG | + | chr5_3:46727319-46727338 | None:intergenic | 50.0% | |
| CCAGTGACCGACTAATCCTA+GGG | + | chr5_3:46727320-46727339 | None:intergenic | 50.0% | |
| !! | CCTAGGATTAGTCGGTCACT+GGG | - | chr5_3:46727318-46727337 | Msa0814550:intron | 50.0% |
| TCCACCGTCATGAAACTGGA+TGG | - | chr5_3:46727682-46727701 | Msa0814550:intron | 50.0% | |
| TCCATCCAGTTTCATGACGG+TGG | + | chr5_3:46727686-46727705 | None:intergenic | 50.0% | |
| ACCGTCATGAAACTGGATGG+AGG | - | chr5_3:46727685-46727704 | Msa0814550:intron | 50.0% | |
| CTTACCAGACAAAGCTGGGA+GGG | + | chr5_3:46727917-46727936 | None:intergenic | 50.0% | |
| AGACTACTGGTGGAACAAGC+TGG | - | chr5_3:46728147-46728166 | Msa0814550:CDS | 50.0% | |
| AAGTCGGTGAATCAAGCCGT+TGG | - | chr5_3:46728205-46728224 | Msa0814550:CDS | 50.0% | |
| TCTCCAATCTCAGTGGCCAA+CGG | + | chr5_3:46728462-46728481 | None:intergenic | 50.0% | |
| TTGGCCACTGAGATTGGAGA+AGG | - | chr5_3:46728462-46728481 | Msa0814550:intron | 50.0% | |
| AGAGCTGGAGAAATTGTCGG+GGG | - | chr5_3:46728686-46728705 | Msa0814550:CDS | 50.0% | |
| GTGTTAAGTCCGAGTGATGC+AGG | - | chr5_3:46729121-46729140 | Msa0814550:intron | 50.0% | |
| CCAATTCGACCTGCATCACT+CGG | + | chr5_3:46729133-46729152 | None:intergenic | 50.0% | |
| CAATGGTCCATTGCAGCAAC+TGG | - | chr5_3:46729951-46729970 | Msa0814550:intron | 50.0% | |
| AAAACCAGTGCCTCTCCATC+AGG | - | chr5_3:46730279-46730298 | Msa0814550:CDS | 50.0% | |
| AAACCAGTGCCTCTCCATCA+GGG | - | chr5_3:46730280-46730299 | Msa0814550:CDS | 50.0% | |
| !! | CTGCATTGGCAAGAGCATCT+AGG | + | chr5_3:46731073-46731092 | None:intergenic | 50.0% |
| ! | ACGATGCCTCGGATGTTTTG+TGG | + | chr5_3:46731150-46731169 | None:intergenic | 50.0% |
| CACACGATACAAGTGCATCC+AGG | + | chr5_3:46731173-46731192 | None:intergenic | 50.0% | |
| GTGTGCATTCAACCACCAAG+TGG | - | chr5_3:46731188-46731207 | Msa0814550:intron | 50.0% | |
| CATTCAACCACCAAGTGGAC+AGG | - | chr5_3:46731193-46731212 | Msa0814550:intron | 50.0% | |
| ! | TGTTTTCCCTGTCCACTTGG+TGG | + | chr5_3:46731203-46731222 | None:intergenic | 50.0% |
| GCTTAAGAGTCTCACAGGCA+AGG | + | chr5_3:46731244-46731263 | None:intergenic | 50.0% | |
| GCATCGTAAGGCTCTTGAAC+CGG | + | chr5_3:46731268-46731287 | None:intergenic | 50.0% | |
| GATGAAGCAGGTACTAGTGG+TGG | - | chr5_3:46731353-46731372 | Msa0814550:intron | 50.0% | |
| ACGGATGAGGGAAGCCTAAA+TGG | - | chr5_3:46731404-46731423 | Msa0814550:intron | 50.0% | |
| GATGAGGGAAGCCTAAATGG+AGG | - | chr5_3:46731407-46731426 | Msa0814550:intron | 50.0% | |
| CCTCAAGCTGACCTCCATTT+AGG | + | chr5_3:46731421-46731440 | None:intergenic | 50.0% | |
| CCTAAATGGAGGTCAGCTTG+AGG | - | chr5_3:46731418-46731437 | Msa0814550:intron | 50.0% | |
| GGGTGGTCTTTGATCTCTGG+TGG | - | chr5_3:46726521-46726540 | Msa0814550:CDS | 55.0% | |
| !! | TACCCACTTGGTTGGCCTAG+CGG | - | chr5_3:46727153-46727172 | Msa0814550:intron | 55.0% |
| !! | CCCTCTGATGCCAGTTTTGG+TGG | - | chr5_3:46727227-46727246 | Msa0814550:intron | 55.0% |
| CCCACCAAAACTGGCATCAG+AGG | + | chr5_3:46727231-46727250 | None:intergenic | 55.0% | |
| TTAAATGGGCCCCCCGCAAT+TGG | - | chr5_3:46727279-46727298 | Msa0814550:intron | 55.0% | |
| AATCCCACCGTCCAATTGCG+GGG | + | chr5_3:46727293-46727312 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCAATTGC+GGG | + | chr5_3:46727294-46727313 | None:intergenic | 55.0% | |
| CCAATCCCACCGTCCAATTG+CGG | + | chr5_3:46727295-46727314 | None:intergenic | 55.0% | |
| !! | CCCTAGGATTAGTCGGTCAC+TGG | - | chr5_3:46727317-46727336 | Msa0814550:intron | 55.0% |
| CCCAGTGACCGACTAATCCT+AGG | + | chr5_3:46727321-46727340 | None:intergenic | 55.0% | |
| AAGCTGGGAGGGCTTAACAC+AGG | + | chr5_3:46727906-46727925 | None:intergenic | 55.0% | |
| ! | TAAGCCCTCCCAGCTTTGTC+TGG | - | chr5_3:46727910-46727929 | Msa0814550:CDS | 55.0% |
| CCTTACCAGACAAAGCTGGG+AGG | + | chr5_3:46727918-46727937 | None:intergenic | 55.0% | |
| ! | CCTCCCAGCTTTGTCTGGTA+AGG | - | chr5_3:46727915-46727934 | Msa0814550:CDS | 55.0% |
| CTGGTGGAACAAGCTGGCAA+AGG | - | chr5_3:46728153-46728172 | Msa0814550:CDS | 55.0% | |
| TGATCTCTCATCCACCACGC+CGG | - | chr5_3:46728598-46728617 | Msa0814550:CDS | 55.0% | |
| TTCCCCTTCACATCAGCAGG+TGG | + | chr5_3:46728624-46728643 | None:intergenic | 55.0% | |
| CCGAGTGATGCAGGTCGAAT+TGG | - | chr5_3:46729130-46729149 | Msa0814550:intron | 55.0% | |
| !! | TTTGGCTTGACACTAGGCGG+CGG | + | chr5_3:46730099-46730118 | None:intergenic | 55.0% |
| ! | TTACCCTGATGGAGAGGCAC+TGG | + | chr5_3:46730286-46730305 | None:intergenic | 55.0% |
| GGTTCTGCATCAGACCAGCT+CGG | - | chr5_3:46730611-46730630 | Msa0814550:intron | 55.0% | |
| ATCAGACCAGCTCGGTCCAA+AGG | - | chr5_3:46730619-46730638 | Msa0814550:intron | 55.0% | |
| CTTGTTCCTTTGGACCGAGC+TGG | + | chr5_3:46730628-46730647 | None:intergenic | 55.0% | |
| !! | AAACATCCGAGGCATCGTCC+TGG | - | chr5_3:46731152-46731171 | Msa0814550:intron | 55.0% |
| CCTGTGAGACTCTTAAGCGC+CGG | - | chr5_3:46731246-46731265 | Msa0814550:intron | 55.0% | |
| GGTTGTTGAGCCTAGTGCTG+CGG | - | chr5_3:46731439-46731458 | Msa0814550:CDS | 55.0% | |
| GTTGTTGAGCCTAGTGCTGC+GGG | - | chr5_3:46731440-46731459 | Msa0814550:CDS | 55.0% | |
| TCCAATTGTCCCGCAGCACT+AGG | + | chr5_3:46731452-46731471 | None:intergenic | 55.0% | |
| AGCGTGGCTGCGTGATACTC+CGG | - | chr5_3:46726938-46726957 | Msa0814550:CDS | 60.0% | |
| CACCGCTAGGCCAACCAAGT+GGG | + | chr5_3:46727158-46727177 | None:intergenic | 60.0% | |
| ACACCGCTAGGCCAACCAAG+TGG | + | chr5_3:46727159-46727178 | None:intergenic | 60.0% | |
| !! | CTTGGTTGGCCTAGCGGTGT+TGG | - | chr5_3:46727159-46727178 | Msa0814550:intron | 60.0% |
| !! | TTGGCCTAGCGGTGTTGGCT+TGG | - | chr5_3:46727164-46727183 | Msa0814550:intron | 60.0% |
| !! | TGGCCTAGCGGTGTTGGCTT+GGG | - | chr5_3:46727165-46727184 | Msa0814550:intron | 60.0% |
| GATCCCAAGCCAACACCGCT+AGG | + | chr5_3:46727171-46727190 | None:intergenic | 60.0% | |
| ATCCCACCGTCCAATTGCGG+GGG | + | chr5_3:46727292-46727311 | None:intergenic | 60.0% | |
| CCGCAATTGGACGGTGGGAT+TGG | - | chr5_3:46727292-46727311 | Msa0814550:intron | 60.0% | |
| CTGCCGTTGGCCACTGAGAT+TGG | - | chr5_3:46728456-46728475 | Msa0814550:intron | 60.0% | |
| CCTTCACATCAGCAGGTGGC+CGG | + | chr5_3:46728620-46728639 | None:intergenic | 60.0% | |
| CGGCCACCTGCTGATGTGAA+GGG | - | chr5_3:46728618-46728637 | Msa0814550:CDS | 60.0% | |
| GGCCACCTGCTGATGTGAAG+GGG | - | chr5_3:46728619-46728638 | Msa0814550:CDS | 60.0% | |
| GCTCCCTAAAGCGTGTGCTG+AGG | - | chr5_3:46729162-46729181 | Msa0814550:intron | 60.0% | |
| CAGCTGACGACGACTCGTCA+GGG | + | chr5_3:46731121-46731140 | None:intergenic | 60.0% | |
| GTGCATCCAGGACGATGCCT+CGG | + | chr5_3:46731161-46731180 | None:intergenic | 60.0% | |
| CCGGCGCTTAAGAGTCTCAC+AGG | + | chr5_3:46731249-46731268 | None:intergenic | 60.0% | |
| GCCTAGTGCTGCGGGACAAT+TGG | - | chr5_3:46731448-46731467 | Msa0814550:CDS | 60.0% | |
| ATGGGCCCCCCGCAATTGGA+CGG | - | chr5_3:46727283-46727302 | Msa0814550:intron | 65.0% | |
| TCCCACCGTCCAATTGCGGG+GGG | + | chr5_3:46727291-46727310 | None:intergenic | 65.0% | |
| GACGGTGGGATTGGACCCCT+AGG | - | chr5_3:46727301-46727320 | Msa0814550:intron | 65.0% | |
| CCGGCCACCTGCTGATGTGA+AGG | - | chr5_3:46728617-46728636 | Msa0814550:CDS | 65.0% | |
| CCAGCTGACGACGACTCGTC+AGG | + | chr5_3:46731122-46731141 | None:intergenic | 65.0% | |
| CCTGACGAGTCGTCGTCAGC+TGG | - | chr5_3:46731119-46731138 | Msa0814550:intron | 65.0% | |
| GCCCCCCGCAATTGGACGGT+GGG | - | chr5_3:46727287-46727306 | Msa0814550:intron | 70.0% | |
| ACATCAGCAGGTGGCCGGCG+TGG | + | chr5_3:46728615-46728634 | None:intergenic | 70.0% | |
| GGCCCCCCGCAATTGGACGG+TGG | - | chr5_3:46727286-46727305 | Msa0814550:intron | 75.0% | |
| TCAGCAGGTGGCCGGCGTGG+TGG | + | chr5_3:46728612-46728631 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 46726237 | 46731770 | 46726237 | ID=Msa0814550;Name=Msa0814550 |
| chr5_3 | mRNA | 46726237 | 46731770 | 46726237 | ID=Msa0814550-mRNA-1;Parent=Msa0814550;Name=Msa0814550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=221|1|0.90|1|1|1|11|232|786 |
| chr5_3 | exon | 46726237 | 46727001 | 46726237 | ID=Msa0814550-mRNA-1:exon:14168;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46727336 | 46727403 | 46727336 | ID=Msa0814550-mRNA-1:exon:14167;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46727706 | 46727752 | 46727706 | ID=Msa0814550-mRNA-1:exon:14166;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46727849 | 46728274 | 46727849 | ID=Msa0814550-mRNA-1:exon:14165;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46728383 | 46728459 | 46728383 | ID=Msa0814550-mRNA-1:exon:14164;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46728538 | 46728712 | 46728538 | ID=Msa0814550-mRNA-1:exon:14163;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46728824 | 46728920 | 46728824 | ID=Msa0814550-mRNA-1:exon:14162;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46729298 | 46729938 | 46729298 | ID=Msa0814550-mRNA-1:exon:14161;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46730076 | 46730177 | 46730076 | ID=Msa0814550-mRNA-1:exon:14160;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46730279 | 46730360 | 46730279 | ID=Msa0814550-mRNA-1:exon:14159;Parent=Msa0814550-mRNA-1 |
| chr5_3 | exon | 46731437 | 46731770 | 46731437 | ID=Msa0814550-mRNA-1:exon:14158;Parent=Msa0814550-mRNA-1 |
| chr5_3 | five_prime_UTR | 46731550 | 46731770 | 46731550 | ID=Msa0814550-mRNA-1:five_prime_utr;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46731437 | 46731549 | 46731437 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46730279 | 46730360 | 46730279 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46730076 | 46730177 | 46730076 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46729298 | 46729938 | 46729298 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46728824 | 46728920 | 46728824 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46728538 | 46728712 | 46728538 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46728383 | 46728459 | 46728383 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46727849 | 46728274 | 46727849 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46727706 | 46727752 | 46727706 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46727336 | 46727403 | 46727336 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | CDS | 46726469 | 46727001 | 46726469 | ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1 |
| chr5_3 | three_prime_UTR | 46726237 | 46726468 | 46726237 | ID=Msa0814550-mRNA-1:three_prime_utr;Parent=Msa0814550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
