AlfalfaGEDB | Msa0814550

M. sativa cultivar zhongmu-4 / Msa0814550

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814550	XP_003616034.2	95.929	786	32	0	1	786	1	786	0.0	1529

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814550	sp\|Q6Z3U3\|Y7797_ORYSJ	41.440	847	395	20	6	771	17	843	0.0	547

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814550	G7K0T7	95.929	786	32	0	1	786	1	786	0.0	1529

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TFs/TRs:

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Gene ID	Type	Classification
Msa0814550	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814550	MtrunA17_Chr5g0432721	95.929	786	32	0	1	786	1	786	0.0	1529
Msa0814550	MtrunA17_Chr3g0107701	55.833	840	301	14	1	778	1	832	0.0	848
Msa0814550	MtrunA17_Chr4g0012861	42.823	836	397	12	1	777	1	814	0.0	610
Msa0814550	MtrunA17_Chr2g0281191	41.058	548	223	12	283	774	314	817	7.71e-110	356
Msa0814550	MtrunA17_Chr2g0281191	43.066	137	60	5	6	135	31	156	1.65e-23	106
Msa0814550	MtrunA17_Chr7g0244871	58.065	93	39	0	314	406	5	97	2.38e-32	120
Msa0814550	MtrunA17_Chr7g0251891	48.235	85	43	1	321	404	16	100	1.82e-19	87.4
Msa0814550	MtrunA17_Chr7g0237841	38.235	102	61	2	321	420	623	724	6.81e-15	79.0
Msa0814550	MtrunA17_Chr1g0178071	37.037	135	64	6	302	422	54	181	1.15e-14	76.3
Msa0814550	MtrunA17_Chr5g0422501	41.818	110	47	4	321	417	235	340	7.51e-14	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814550	AT4G32010.2	41.019	746	315	14	3	706	4	666	1.96e-175	523
Msa0814550	AT4G32010.1	40.800	750	315	15	3	706	4	670	1.11e-173	519
Msa0814550	AT2G30470.1	40.564	816	360	20	1	774	6	738	1.00e-172	517
Msa0814550	AT4G21550.2	33.333	453	260	10	3	437	14	442	2.94e-68	235
Msa0814550	AT4G21550.3	33.333	453	260	10	3	437	14	442	1.73e-67	233
Msa0814550	AT4G21550.1	33.333	453	260	10	3	437	14	442	2.63e-67	237
Msa0814550	AT4G21550.1	40.336	119	56	4	657	774	551	655	2.83e-12	70.9
Msa0814550	AT3G26790.1	39.806	103	61	1	321	422	91	193	2.92e-18	87.0
Msa0814550	AT5G06250.5	35.135	148	73	6	310	439	37	179	1.98e-15	77.8
Msa0814550	AT2G36080.4	39.815	108	56	4	321	421	37	142	2.02e-15	75.5

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Find 211 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTGCCTCTCCATC+AGG	0.394979	5_3:-46727706	Msa0814550:CDS
AAAAGAGGTCTCGCAATATT+GGG	0.407718	5_3:-46727996	Msa0814550:CDS
AAACATCCGAGGCATCGTCC+TGG	0.526966	5_3:-46726833	Msa0814550:CDS
AAACCAGTGCCTCTCCATCA+GGG	0.622368	5_3:-46727705	Msa0814550:intron
AAAGGGTGGTCTTTGATCTC+TGG	0.456650	5_3:-46731467	Msa0814550:CDS
AAATTCCACCGTCATGAAAC+TGG	0.376289	5_3:-46730307	Msa0814550:CDS
AACAATGCAAGTGATCGATA+TGG	0.408713	5_3:-46729877	Msa0814550:CDS
AACGGGGAACCTTACTTAAA+TGG	0.309832	5_3:-46728132	Msa0814550:CDS
AACTTATACCACCGAAATCA+AGG	0.500512	5_3:+46730111	None:intergenic
AAGAAATTCTGTTCTGCCGT+TGG	0.479555	5_3:-46729542	Msa0814550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATCTTGAATCTTGAAAC+TGG	-	chr5_3:46726262-46726281	Msa0814550:three_prime_UTR	30.0%
TGATTTCAACACTAACATTG+AGG	-	chr5_3:46726360-46726379	Msa0814550:three_prime_UTR	30.0%
TGTTCTTATGAGTTCATGTT+GGG	-	chr5_3:46726722-46726741	Msa0814550:CDS	30.0%
AAAACCCCAGAAAAGAAAAA+GGG	+	chr5_3:46726765-46726784	None:intergenic	30.0%
CTGATCATTATTTCATCCAA+AGG	+	chr5_3:46726833-46726852	None:intergenic	30.0%
CAATTATAGAGTGAACAGAA+AGG	+	chr5_3:46727084-46727103	None:intergenic	30.0%
TTACTTTGTGCTCCTTTAAA+GGG	-	chr5_3:46727191-46727210	Msa0814550:intron	30.0%
AAGTCCATGTTGCAATTTAT+AGG	-	chr5_3:46727472-46727491	Msa0814550:intron	30.0%
AGTCCATGTTGCAATTTATA+GGG	-	chr5_3:46727473-46727492	Msa0814550:intron	30.0%
TTACCCTATAAATTGCAACA+TGG	+	chr5_3:46727479-46727498	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	46726237	46731770	46726237	ID=Msa0814550;Name=Msa0814550
chr5_3	mRNA	46726237	46731770	46726237	ID=Msa0814550-mRNA-1;Parent=Msa0814550;Name=Msa0814550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=221\|1\|0.90\|1\|1\|1\|11\|232\|786
chr5_3	exon	46726237	46727001	46726237	ID=Msa0814550-mRNA-1:exon:14168;Parent=Msa0814550-mRNA-1
chr5_3	exon	46727336	46727403	46727336	ID=Msa0814550-mRNA-1:exon:14167;Parent=Msa0814550-mRNA-1
chr5_3	exon	46727706	46727752	46727706	ID=Msa0814550-mRNA-1:exon:14166;Parent=Msa0814550-mRNA-1
chr5_3	exon	46727849	46728274	46727849	ID=Msa0814550-mRNA-1:exon:14165;Parent=Msa0814550-mRNA-1
chr5_3	exon	46728383	46728459	46728383	ID=Msa0814550-mRNA-1:exon:14164;Parent=Msa0814550-mRNA-1
chr5_3	exon	46728538	46728712	46728538	ID=Msa0814550-mRNA-1:exon:14163;Parent=Msa0814550-mRNA-1
chr5_3	exon	46728824	46728920	46728824	ID=Msa0814550-mRNA-1:exon:14162;Parent=Msa0814550-mRNA-1
chr5_3	exon	46729298	46729938	46729298	ID=Msa0814550-mRNA-1:exon:14161;Parent=Msa0814550-mRNA-1
chr5_3	exon	46730076	46730177	46730076	ID=Msa0814550-mRNA-1:exon:14160;Parent=Msa0814550-mRNA-1
chr5_3	exon	46730279	46730360	46730279	ID=Msa0814550-mRNA-1:exon:14159;Parent=Msa0814550-mRNA-1
chr5_3	exon	46731437	46731770	46731437	ID=Msa0814550-mRNA-1:exon:14158;Parent=Msa0814550-mRNA-1
chr5_3	five_prime_UTR	46731550	46731770	46731550	ID=Msa0814550-mRNA-1:five_prime_utr;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46731437	46731549	46731437	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46730279	46730360	46730279	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46730076	46730177	46730076	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46729298	46729938	46729298	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46728824	46728920	46728824	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46728538	46728712	46728538	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46728383	46728459	46728383	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46727849	46728274	46727849	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46727706	46727752	46727706	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46727336	46727403	46727336	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	CDS	46726469	46727001	46726469	ID=Msa0814550-mRNA-1:cds;Parent=Msa0814550-mRNA-1
chr5_3	three_prime_UTR	46726237	46726468	46726237	ID=Msa0814550-mRNA-1:three_prime_utr;Parent=Msa0814550-mRNA-1

Gene Sequence

>Msa0814550

ATGGGGGTTGAAGTGTGTATGAATAATTATTGTAAGGAAGGTTCAACTGGTGAATGGAAGAAAGGGTGGTCTTTGATCTCTGGTGGGTTTGCCAAACTCTGCAACAAATGCGGACTTGCCTATGAGAATTCACTTTTCTGTGATAAATTCCACCGTCATGAAACTGGATGGAGGAAATGCAGCAATTGCAGCAAGCCTATCCACAGTGGATGTATAGTATCAAAGTCTTCGTTCGAGTACCTTGATTTCGGTGGTATAAGTTGTGTTACCTGTGTTAAGCCCTCCCAGCTTTGTCTGGATACTGAAAATCATAATAGGTTCCCTCAATCGACCAAAAACAATGCAAGTGATCGATATGGTGAACATATTGATGGTAGACTACTGGTGGAACAAGCTGGCAAAGGAAACCTTATGCAGTTGTGTAGAATTGGTGAAGTCGGTGAATCAAGCCGTTGGTCACAAGCTCAAAGAGATGGCATGGTTTCATGTATTGGTCCAAAGACCGAAGAAGTTAAGTGTCAATTCAACAAAGAGGATACAAGATTTTTGAATGTAATGAAACATTCTAGTCCTTTAACAGCATTTACTACATTGGAAAATAATAGACCAACATGGGAGACTAAAAGTATAGATGAAACGCTTTCACTAAAGATGGCTCTAGGAACTTCATCAAGAAATTCTGTTCTGCCGTTGGCCACTGAGATTGGAGAAGGTAAACTTGAGGGTAAAGCATCTTCTCATTTTCAACAAGGGCAAACATCTCAGTCTATATTGGCTCAACTATCAAAGACTGGAATTACCATGAGTCTTGAAACAAATAAAGGCATGATCTCTCATCCACCACGCCGGCCACCTGCTGATGTGAAGGGGAAAAATCAGTTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCGGGGGATTTGAAGTCTACTGTAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTGCTCCCTAAAGCGTGTGCTGAGGCTTTTCTTCCTCGTATTTTGCAATCAGAAGGTGTTCCTTTACAGTTCCAAGATATAATGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCTTGCAATTAAATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGGAACAAATTTCTATTTGGTTTTAGAAGGTCATTGACTTCTGTTGTTACACAGGATGCCTCTACATCTTCTCATTCTAACGGCATTTCGATAAAGGATCCAAACTTTTCTGGTGCACCTCAGAATTTGAACTCATTAGGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGGGAACCTTACTTAAATGGACATTCAGAACATCTGTGTTTGGGTAATGGAACTGCTGATTGGCTTAAAACTGCACATAGTGAGGAGGAAATGAACAATGGTCCATTGCAGCAACTGGTTTCAGTTTCAGAGAAAAAGAGGTCTCGCAATATTGGGACGAAAACTAAGAGGTTGCACATTCATAGCGAAGATGCTATGGAATTGAGACTTACATGGGAAGAAGCACAAGAATTTCTTTGTCCGCCGCCTAGTGTCAAGCCAAATATTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTCGGAAAGATTAAAACCAGTGCCTCTCCATCAGGGTCTTCAGGTTCTGCATCAGACCAGCTCGGTCCAAAGGAACAAGAAAGTCTTCAAAGAACCAAAAAAGATTCTAAAAAGAAGCGAAAAATTGCTGAAAAGAGCAAGTCAATTCAAGAACACAAGCTTTCAGGCCTAGATGCTCTTGCCAATGCAGCAGTTTTAAGCAATAATCTTGCTGACCCTGACGAGTCGTCGTCAGCTGGAATCACCACAAAACATCCGAGGCATCGTCCTGGATGCACTTGTATCGTGTGCATTCAACCACCAAGTGGACAGGGAAAACATGACCCGACATGCACTTGCCTTGCCTGTGAGACTCTTAAGCGCCGGTTCAAGAGCCTTACGATGCGTAAGAAGAAAAACCAATTAGAATCTGAAGCAGTTGCTGACCAAAACAATCAAATTAATCATATAGATGAAGCAGGTACTAGTGGTGGTGTAACGAGACAAGATACAAGTCACTCAACGGATGAGGGAAGCCTAAATGGAGGTCAGCTTGAGGTTGTTGAGCCTAGTGCTGCGGGACAATTGGATTTGAATTCTCATCCCAGTCATGAAGAAATGGAAACTGATACATATAACAGGCCAAAGCATGACTAG

Protein sequence

>Msa0814550

MGVEVCMNNYCKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGCIVSKSSFEYLDFGGISCVTCVKPSQLCLDTENHNRFPQSTKNNASDRYGEHIDGRLLVEQAGKGNLMQLCRIGEVGESSRWSQAQRDGMVSCIGPKTEEVKCQFNKEDTRFLNVMKHSSPLTAFTTLENNRPTWETKSIDETLSLKMALGTSSRNSVLPLATEIGEGKLEGKASSHFQQGQTSQSILAQLSKTGITMSLETNKGMISHPPRRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGNKFLFGFRRSLTSVVTQDASTSSHSNGISIKDPNFSGAPQNLNSLGSFSNLLQSMKGNGEPYLNGHSEHLCLGNGTADWLKTAHSEEEMNNGPLQQLVSVSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVKPNIVTIEDQVFEEYDEPPVFGKIKTSASPSGSSGSASDQLGPKEQESLQRTKKDSKKKRKIAEKSKSIQEHKLSGLDALANAAVLSNNLADPDESSSAGITTKHPRHRPGCTCIVCIQPPSGQGKHDPTCTCLACETLKRRFKSLTMRKKKNQLESEAVADQNNQINHIDEAGTSGGVTRQDTSHSTDEGSLNGGQLEVVEPSAAGQLDLNSHPSHEEMETDTYNRPKHD*