AlfalfaGEDB | Msa0814700

M. sativa cultivar zhongmu-4 / Msa0814700

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814700	XP_024641056.1	93.160	307	9	3	1	307	1	295	0.0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814700	sp\|Q9FX68\|ZWIP6_ARATH	67.681	263	57	6	21	278	12	251	1.84e-116	340

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814700	A0A396HR52	93.160	307	9	3	1	307	1	295	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
Msa0814700	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814700	MtrunA17_Chr5g0422571	93.160	307	9	3	1	307	1	295	0.0	587
Msa0814700	MtrunA17_Chr1g0198651	70.120	251	60	5	21	269	23	260	9.72e-116	335
Msa0814700	MtrunA17_Chr2g0328921	67.890	218	56	4	68	274	84	298	1.32e-106	313
Msa0814700	MtrunA17_Chr1g0173841	61.538	247	60	4	71	288	144	384	5.80e-106	314
Msa0814700	MtrunA17_Chr7g0258011	62.821	234	60	3	76	288	118	345	1.31e-103	306
Msa0814700	MtrunA17_Chr8g0352011	62.174	230	64	5	76	288	112	335	1.23e-102	304
Msa0814700	MtrunA17_Chr2g0321291	62.009	229	68	5	63	274	68	294	3.60e-100	296
Msa0814700	MtrunA17_Chr4g0026521	63.470	219	64	4	78	283	76	291	2.30e-98	291
Msa0814700	MtrunA17_Chr4g0053341	64.390	205	63	3	68	269	32	229	1.25e-94	279
Msa0814700	MtrunA17_Chr1g0200421	38.596	171	87	8	108	264	226	392	1.22e-24	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814700	AT1G13290.1	67.681	263	57	6	21	278	12	251	1.87e-117	340
Msa0814700	AT3G57670.1	72.632	190	40	2	108	297	199	376	7.92e-101	301
Msa0814700	AT1G51220.1	53.952	291	102	6	7	269	34	320	3.57e-100	298
Msa0814700	AT3G20880.1	63.594	217	46	4	54	264	204	393	2.20e-97	293
Msa0814700	AT1G08290.1	70.056	177	45	1	110	286	164	332	1.15e-95	286
Msa0814700	AT1G34790.1	63.333	210	64	3	76	273	83	291	2.26e-91	274
Msa0814700	AT1G34370.3	38.235	170	91	6	108	264	9	177	6.21e-27	107
Msa0814700	AT1G34370.2	40.397	151	83	5	120	264	238	387	2.22e-26	108
Msa0814700	AT1G34370.1	40.397	151	83	5	120	264	238	387	2.22e-26	108
Msa0814700	AT5G22890.1	39.785	186	94	11	91	264	181	360	1.67e-24	102

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Find 67 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCAGAATCTCTAA+GGG	0.555739	5_3:+46959862	Msa0814700:CDS
AAAGATCATGTTCGTGCTTT+CGG	0.314009	5_3:+46960157	Msa0814700:CDS
AAAGGACCAGAATCTCTAAG+GGG	0.721082	5_3:+46959863	Msa0814700:CDS
AAGCATGGAGCGAAGCCATT+CGG	0.440022	5_3:+46960016	Msa0814700:CDS
ACACACTACAAGAGGAAGCA+TGG	0.591744	5_3:+46960001	Msa0814700:CDS
ACAGTGCAAGAGAACTGTGT+TGG	0.625514	5_3:-46959164	None:intergenic
ACATAGAGCATCCAAGGTCA+AGG	0.630952	5_3:+46959951	Msa0814700:CDS
ACCACTTTGCTCATCATCAA+TGG	0.458380	5_3:-46959000	None:intergenic
ACCATTGATGATGAGCAAAG+TGG	0.669448	5_3:+46958999	Msa0814700:CDS
AGAACAACATAGAGCATCCA+AGG	0.593445	5_3:+46959945	Msa0814700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAATGTGGAGGATAGTTT+AGG	-	chr5_3:46958915-46958934	None:intergenic	30.0%
AGTAGAAGAGTGATTTAATG+TGG	-	chr5_3:46958928-46958947	None:intergenic	30.0%
TGATGATCAGGTTTACTAAT+AGG	-	chr5_3:46959080-46959099	None:intergenic	30.0%
TAGTAAACCTGATCATCATT+TGG	+	chr5_3:46959082-46959101	Msa0814700:CDS	30.0%
ATCCAATATTGACCTTGAAT+AGG	-	chr5_3:46959116-46959135	None:intergenic	30.0%
AACGATTCAAGATGGTATTA+AGG	-	chr5_3:46959466-46959485	None:intergenic	30.0%
ATGTCCTAATGCATACTATA+TGG	+	chr5_3:46959597-46959616	Msa0814700:intron	30.0%
TCTTCCATATAGTATGCATT+AGG	-	chr5_3:46959604-46959623	None:intergenic	30.0%
GTATATATCAGATGCATATG+TGG	+	chr5_3:46959819-46959838	Msa0814700:intron	30.0%
ATATATCAGATGCATATGTG+GGG	+	chr5_3:46959821-46959840	Msa0814700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	46958798	46960327	46958798	ID=Msa0814700;Name=Msa0814700
chr5_3	mRNA	46958798	46960327	46958798	ID=Msa0814700-mRNA-1;Parent=Msa0814700;Name=Msa0814700-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|2\|0\|307
chr5_3	exon	46958798	46959223	46958798	ID=Msa0814700-mRNA-1:exon:14218;Parent=Msa0814700-mRNA-1
chr5_3	exon	46959830	46960327	46959830	ID=Msa0814700-mRNA-1:exon:14219;Parent=Msa0814700-mRNA-1
chr5_3	CDS	46958798	46959223	46958798	ID=Msa0814700-mRNA-1:cds;Parent=Msa0814700-mRNA-1
chr5_3	CDS	46959830	46960327	46959830	ID=Msa0814700-mRNA-1:cds;Parent=Msa0814700-mRNA-1

Gene Sequence

>Msa0814700

ATGCAAGCTCACACATTCTCCTACATATCCTCAATTGAACCTAATAGTAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGAACACACAACCACAAACCTAAACTATCCTCCACATTAAATCACTCTTCTACTACTCTTCATCATCATCATCATAATCATAATCACCACCAAAAGCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCAACCAACATTTCACAAAACACAACACCTATTAGTAAACCTGATCATCATTTGGCTTCAGCTCCTATTCAAGGTCAATATTGGATTCCTTCTCCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTTTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGATGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCGAAGCCATTCGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTTGAGAGTTGTGAAGATCAGGAAGTATTGTTAGGTGATGAATATGATGAGGAATTTGAAGGAGATGAAAATTATGAAGATGATGATGATAATGATAACATCGATCGAATGGTTTTCGGTTTTTAA

Protein sequence

>Msa0814700

MQAHTFSYISSIEPNSNDTVDESSISLSLGPPGTHNHKPKLSSTLNHSSTTLHHHHHNHNHHQKQNFTIDDEQSGVTVALHIGLPTNISQNTTPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQEVLLGDEYDEEFEGDENYEDDDDNDNIDRMVFGF*