AlfalfaGEDB | Msa0814820

M. sativa cultivar zhongmu-4 / Msa0814820

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814820	XP_003616071.2	86.283	226	25	4	1	222	1	224	2.90e-133	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814820	sp\|Q9FNN6\|SRM1_ARATH	35.393	178	92	6	21	179	12	185	1.61e-24	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814820	G7K5U8	86.283	226	25	4	1	222	1	224	1.38e-133	384

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TFs/TRs:

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Gene ID	Type	Classification
Msa0814820	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814820	MtrunA17_Chr5g0432941	86.283	226	25	4	1	222	1	224	2.66e-137	384
Msa0814820	MtrunA17_Chr5g0432921	83.556	225	33	3	1	222	1	224	7.80e-134	375
Msa0814820	MtrunA17_Chr1g0192061	49.296	142	55	2	70	209	19	145	2.42e-37	129
Msa0814820	MtrunA17_Chr1g0210471	40.782	179	91	6	20	186	23	198	4.69e-33	119
Msa0814820	MtrunA17_Chr1g0162081	38.043	184	89	8	18	179	9	189	5.42e-30	112
Msa0814820	MtrunA17_Chr8g0365011	36.994	173	87	6	15	173	2	166	8.42e-25	99.0
Msa0814820	MtrunA17_Chr3g0104071	36.517	178	84	8	7	158	20	194	7.64e-22	91.7
Msa0814820	MtrunA17_Chr7g0241761	32.227	211	119	9	4	194	18	224	4.35e-21	89.4
Msa0814820	MtrunA17_Chr4g0062741	29.648	199	99	6	21	179	8	205	6.15e-21	88.6
Msa0814820	MtrunA17_Chr5g0429521	32.941	170	91	6	7	158	15	179	2.54e-19	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0814820	AT5G04760.1	37.079	178	82	5	18	179	3	166	1.19e-25	99.8
Msa0814820	AT5G08520.1	35.393	178	92	6	21	179	12	185	1.64e-25	101
Msa0814820	AT3G10580.2	36.527	167	92	5	21	184	8	163	7.72e-23	93.2
Msa0814820	AT3G10580.1	36.527	167	92	5	21	184	8	163	8.35e-23	94.0
Msa0814820	AT5G23650.1	38.068	176	87	7	21	177	13	185	2.26e-21	90.9
Msa0814820	AT2G38090.1	31.674	221	112	10	1	196	8	214	5.19e-20	86.7
Msa0814820	AT4G09450.1	38.571	140	76	4	20	157	6	137	1.80e-19	83.2
Msa0814820	AT1G49010.1	30.102	196	98	7	21	179	8	201	2.81e-19	84.7
Msa0814820	AT5G58900.1	32.530	166	85	5	16	159	29	189	2.40e-18	82.0
Msa0814820	AT5G01200.1	32.432	185	98	6	21	179	30	213	5.95e-18	80.5

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Find 46 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGGAGTGGACAT+GGG	0.673138	5_3:+47280495	Msa0814820:CDS
AAATAATGATGGAAAATCAA+AGG	0.595595	5_3:+47280483	Msa0814820:CDS
AAATTTCCATCCCATGAGGT+AGG	0.632795	5_3:-47281593	None:intergenic
AAGCATTTCCTTCACATAAA+TGG	0.223126	5_3:+47281470	Msa0814820:CDS
ACGAACAACACAAATAATGA+TGG	0.488615	5_3:+47280472	Msa0814820:CDS
AGATTCATAAGAAGGGAAAT+TGG	0.369394	5_3:+47281387	Msa0814820:CDS
AGGAAGTACAAGAAGGTCGA+TGG	0.560186	5_3:+47280560	Msa0814820:CDS
AGTTGCCCTTATAGAGAAAA+GGG	0.498666	5_3:-47281619	None:intergenic
ATAAAATCATCTGAGTTTGT+TGG	0.441615	5_3:-47280688	None:intergenic
ATGATGGAAAATCAAAGGAG+TGG	0.613850	5_3:+47280488	Msa0814820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGAACAACACAAATAATGA+TGG	+	chr5_3:47280472-47280491	Msa0814820:CDS	30.0%
CTCAAGATATTCAAAGAGAA+CGG	-	chr5_3:47280542-47280561	None:intergenic	30.0%
TGAAGTAAAAGAACACTATG+AGG	+	chr5_3:47280618-47280637	Msa0814820:CDS	30.0%
ACCATAAAAGTAATGATGCA+GGG	-	chr5_3:47281157-47281176	None:intergenic	30.0%
AACCATAAAAGTAATGATGC+AGG	-	chr5_3:47281158-47281177	None:intergenic	30.0%
CTTGACACTAACATATGTAT+TGG	+	chr5_3:47281273-47281292	Msa0814820:intron	30.0%
AGATTCATAAGAAGGGAAAT+TGG	+	chr5_3:47281387-47281406	Msa0814820:CDS	30.0%
AAGCATTTCCTTCACATAAA+TGG	+	chr5_3:47281470-47281489	Msa0814820:CDS	30.0%
TTCAACATTACCTCATTGAA+GGG	+	chr5_3:47281527-47281546	Msa0814820:CDS	30.0%
ACGAACAACACAAATAATGA+TGG	+	chr5_3:47280472-47280491	Msa0814820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	47280448	47281676	47280448	ID=Msa0814820;Name=Msa0814820
chr5_3	mRNA	47280448	47281676	47280448	ID=Msa0814820-mRNA-1;Parent=Msa0814820;Name=Msa0814820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|1\|1\|2\|0\|222
chr5_3	exon	47280448	47280806	47280448	ID=Msa0814820-mRNA-1:exon:14332;Parent=Msa0814820-mRNA-1
chr5_3	exon	47281367	47281676	47281367	ID=Msa0814820-mRNA-1:exon:14333;Parent=Msa0814820-mRNA-1
chr5_3	CDS	47280448	47280806	47280448	ID=Msa0814820-mRNA-1:cds;Parent=Msa0814820-mRNA-1
chr5_3	CDS	47281367	47281676	47281367	ID=Msa0814820-mRNA-1:cds;Parent=Msa0814820-mRNA-1

Gene Sequence

>Msa0814820

ATGTATCAATCTTCATACCAACATACGAACAACACAAATAATGATGGAAAATCAAAGGAGTGGACATGGGATGAAAATAAAATCTTTGAGACCGTTCTCTTTGAATATCTTGAGGAAGTACAAGAAGGTCGATGGGAAAATCTTGCTCTTGTTTGCGGTCGATCATCAACTGAAGTAAAAGAACACTATGAGGCATTGTTGCATGACTTAGCACTCATTGAGGAAGGTCTTGTCGATTTTCCAACAAACTCAGATGATTTTATTTCGAAAGGCAATGCTTCAATCGATGAGAAGAAAGCTCCTCCAACTAAGAATAAGACTAAGAAAGTGGTGAAACATTGGAGTGAAGAAGAACACAGGTTATTTGTAGAGGGGATCGAGATTCATAAGAAGGGAAATTGGAAAATGATTTCACAACATGTTCGTACAAGAACTCCAAGTCAATGTGCTAGCCATGCTCAAAAGCATTTCCTTCACATAAATGGTACATTAAAAAAGACTTATAAAAAAAGAAGCAACTTCAACATTACCTCATTGAAGGGAGATTCCAAACCTCTTCTCAGTAAGGACAACATTCCATCTCTTCCTACCTCATGGGATGGAAATTTCCACCCTTTTCTCTATAAGGGCAACTATGTTCCAGCTCTTCTTTATCCTCATCCGAATTAA

Protein sequence

>Msa0814820

MYQSSYQHTNNTNNDGKSKEWTWDENKIFETVLFEYLEEVQEGRWENLALVCGRSSTEVKEHYEALLHDLALIEEGLVDFPTNSDDFISKGNASIDEKKAPPTKNKTKKVVKHWSEEEHRLFVEGIEIHKKGNWKMISQHVRTRTPSQCASHAQKHFLHINGTLKKTYKKRSNFNITSLKGDSKPLLSKDNIPSLPTSWDGNFHPFLYKGNYVPALLYPHPN*