Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814820 | XP_003616071.2 | 86.283 | 226 | 25 | 4 | 1 | 222 | 1 | 224 | 2.90e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814820 | sp|Q9FNN6|SRM1_ARATH | 35.393 | 178 | 92 | 6 | 21 | 179 | 12 | 185 | 1.61e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814820 | G7K5U8 | 86.283 | 226 | 25 | 4 | 1 | 222 | 1 | 224 | 1.38e-133 | 384 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0814820 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814820 | MtrunA17_Chr5g0432941 | 86.283 | 226 | 25 | 4 | 1 | 222 | 1 | 224 | 2.66e-137 | 384 |
| Msa0814820 | MtrunA17_Chr5g0432921 | 83.556 | 225 | 33 | 3 | 1 | 222 | 1 | 224 | 7.80e-134 | 375 |
| Msa0814820 | MtrunA17_Chr1g0192061 | 49.296 | 142 | 55 | 2 | 70 | 209 | 19 | 145 | 2.42e-37 | 129 |
| Msa0814820 | MtrunA17_Chr1g0210471 | 40.782 | 179 | 91 | 6 | 20 | 186 | 23 | 198 | 4.69e-33 | 119 |
| Msa0814820 | MtrunA17_Chr1g0162081 | 38.043 | 184 | 89 | 8 | 18 | 179 | 9 | 189 | 5.42e-30 | 112 |
| Msa0814820 | MtrunA17_Chr8g0365011 | 36.994 | 173 | 87 | 6 | 15 | 173 | 2 | 166 | 8.42e-25 | 99.0 |
| Msa0814820 | MtrunA17_Chr3g0104071 | 36.517 | 178 | 84 | 8 | 7 | 158 | 20 | 194 | 7.64e-22 | 91.7 |
| Msa0814820 | MtrunA17_Chr7g0241761 | 32.227 | 211 | 119 | 9 | 4 | 194 | 18 | 224 | 4.35e-21 | 89.4 |
| Msa0814820 | MtrunA17_Chr4g0062741 | 29.648 | 199 | 99 | 6 | 21 | 179 | 8 | 205 | 6.15e-21 | 88.6 |
| Msa0814820 | MtrunA17_Chr5g0429521 | 32.941 | 170 | 91 | 6 | 7 | 158 | 15 | 179 | 2.54e-19 | 84.3 |
| Msa0814820 | MtrunA17_Chr5g0436501 | 33.333 | 150 | 88 | 6 | 20 | 159 | 26 | 173 | 2.25e-16 | 75.9 |
| Msa0814820 | MtrunA17_Chr5g0440731 | 41.905 | 105 | 53 | 5 | 97 | 195 | 92 | 194 | 2.14e-15 | 73.6 |
| Msa0814820 | MtrunA17_Chr5g0409841 | 45.977 | 87 | 43 | 2 | 113 | 195 | 93 | 179 | 8.21e-15 | 70.9 |
| Msa0814820 | MtrunA17_Chr5g0440741 | 46.067 | 89 | 42 | 4 | 113 | 195 | 101 | 189 | 1.06e-14 | 71.2 |
| Msa0814820 | MtrunA17_Chr5g0409831 | 42.169 | 83 | 44 | 3 | 78 | 159 | 46 | 125 | 8.39e-13 | 65.5 |
| Msa0814820 | MtrunA17_Chr4g0059701 | 43.421 | 76 | 39 | 2 | 86 | 157 | 55 | 130 | 1.09e-12 | 65.9 |
| Msa0814820 | MtrunA17_Chr3g0092621 | 46.970 | 66 | 33 | 2 | 114 | 178 | 86 | 150 | 1.40e-12 | 63.5 |
| Msa0814820 | MtrunA17_Chr6g0488471 | 49.231 | 65 | 31 | 2 | 114 | 177 | 99 | 162 | 1.89e-12 | 65.1 |
| Msa0814820 | MtrunA17_Chr6g0452791 | 60.870 | 46 | 17 | 1 | 114 | 158 | 82 | 127 | 6.24e-12 | 62.0 |
| Msa0814820 | MtrunA17_Chr5g0415191 | 43.421 | 76 | 31 | 2 | 84 | 158 | 85 | 149 | 7.20e-12 | 63.5 |
| Msa0814820 | MtrunA17_Chr8g0389241 | 51.613 | 62 | 26 | 3 | 114 | 174 | 107 | 165 | 1.17e-11 | 62.8 |
| Msa0814820 | MtrunA17_Chr8g0364741 | 36.283 | 113 | 63 | 4 | 16 | 121 | 5 | 115 | 3.46e-11 | 58.9 |
| Msa0814820 | MtrunA17_Chr4g0055931 | 32.143 | 112 | 72 | 3 | 81 | 190 | 64 | 173 | 4.65e-11 | 61.2 |
| Msa0814820 | MtrunA17_Chr3g0135671 | 60.870 | 46 | 17 | 1 | 114 | 158 | 93 | 138 | 5.98e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814820 | AT5G04760.1 | 37.079 | 178 | 82 | 5 | 18 | 179 | 3 | 166 | 1.19e-25 | 99.8 |
| Msa0814820 | AT5G08520.1 | 35.393 | 178 | 92 | 6 | 21 | 179 | 12 | 185 | 1.64e-25 | 101 |
| Msa0814820 | AT3G10580.2 | 36.527 | 167 | 92 | 5 | 21 | 184 | 8 | 163 | 7.72e-23 | 93.2 |
| Msa0814820 | AT3G10580.1 | 36.527 | 167 | 92 | 5 | 21 | 184 | 8 | 163 | 8.35e-23 | 94.0 |
| Msa0814820 | AT5G23650.1 | 38.068 | 176 | 87 | 7 | 21 | 177 | 13 | 185 | 2.26e-21 | 90.9 |
| Msa0814820 | AT2G38090.1 | 31.674 | 221 | 112 | 10 | 1 | 196 | 8 | 214 | 5.19e-20 | 86.7 |
| Msa0814820 | AT4G09450.1 | 38.571 | 140 | 76 | 4 | 20 | 157 | 6 | 137 | 1.80e-19 | 83.2 |
| Msa0814820 | AT1G49010.1 | 30.102 | 196 | 98 | 7 | 21 | 179 | 8 | 201 | 2.81e-19 | 84.7 |
| Msa0814820 | AT5G58900.1 | 32.530 | 166 | 85 | 5 | 16 | 159 | 29 | 189 | 2.40e-18 | 82.0 |
| Msa0814820 | AT5G01200.1 | 32.432 | 185 | 98 | 6 | 21 | 179 | 30 | 213 | 5.95e-18 | 80.5 |
| Msa0814820 | AT5G05790.2 | 30.198 | 202 | 114 | 5 | 17 | 195 | 27 | 224 | 2.47e-17 | 79.0 |
| Msa0814820 | AT5G05790.1 | 30.198 | 202 | 114 | 5 | 17 | 195 | 27 | 224 | 2.47e-17 | 79.0 |
| Msa0814820 | AT3G11280.2 | 35.211 | 142 | 86 | 4 | 21 | 157 | 33 | 173 | 3.07e-16 | 75.9 |
| Msa0814820 | AT3G11280.1 | 35.211 | 142 | 86 | 4 | 21 | 157 | 33 | 173 | 3.07e-16 | 75.9 |
| Msa0814820 | AT5G47390.1 | 36.207 | 116 | 55 | 5 | 84 | 193 | 79 | 181 | 3.90e-13 | 67.8 |
| Msa0814820 | AT1G70000.1 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.31e-12 | 65.5 |
| Msa0814820 | AT1G70000.2 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.31e-12 | 65.5 |
| Msa0814820 | AT3G10590.1 | 27.179 | 195 | 120 | 5 | 16 | 193 | 2 | 191 | 1.92e-12 | 64.3 |
Find 46 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATTTCCTTCACATAAA+TGG | 0.223126 | 5_3:+47281470 | Msa0814820:CDS |
| TTGAATTTCAACATTTAATT+CGG | 0.308654 | 5_3:-47281668 | None:intergenic |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5_3:-47280751 | None:intergenic |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5_3:+47281387 | Msa0814820:CDS |
| GTCCTTACTGAGAAGAGGTT+TGG | 0.374736 | 5_3:-47281555 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5_3:-47280748 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5_3:+47280583 | Msa0814820:CDS |
| ATAAAATCATCTGAGTTTGT+TGG | 0.441615 | 5_3:-47280688 | None:intergenic |
| CTTCAACATTACCTCATTGA+AGG | 0.462445 | 5_3:+47281526 | Msa0814820:CDS |
| TAGTTGCCCTTATAGAGAAA+AGG | 0.463996 | 5_3:-47281620 | None:intergenic |
| GGGGATCGAGATTCATAAGA+AGG | 0.485700 | 5_3:+47281379 | Msa0814820:CDS |
| ACGAACAACACAAATAATGA+TGG | 0.488615 | 5_3:+47280472 | Msa0814820:CDS |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5_3:-47281443 | None:intergenic |
| TTCAACATTTAATTCGGATG+AGG | 0.495392 | 5_3:-47281662 | None:intergenic |
| TTCCATCTCTTCCTACCTCA+TGG | 0.497218 | 5_3:+47281582 | Msa0814820:CDS |
| AGTTGCCCTTATAGAGAAAA+GGG | 0.498666 | 5_3:-47281619 | None:intergenic |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5_3:+47280767 | Msa0814820:CDS |
| TCCCATGAGGTAGGAAGAGA+TGG | 0.508995 | 5_3:-47281584 | None:intergenic |
| TATTTGTGTTGTTCGTATGT+TGG | 0.513424 | 5_3:-47280465 | None:intergenic |
| GGATGAGGATAAAGAAGAGC+TGG | 0.516096 | 5_3:-47281647 | None:intergenic |
| TTCCAAACCTCTTCTCAGTA+AGG | 0.524962 | 5_3:+47281553 | Msa0814820:CDS |
| TTAATGTACCATTTATGTGA+AGG | 0.526318 | 5_3:-47281478 | None:intergenic |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5_3:+47280756 | Msa0814820:CDS |
| TTCAACATTACCTCATTGAA+GGG | 0.537386 | 5_3:+47281527 | Msa0814820:CDS |
| TTTATAGGTTATTTGTAGAG+GGG | 0.539836 | 5_3:+47281360 | Msa0814820:intron |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5_3:+47280560 | Msa0814820:CDS |
| ATGTTGTCCTTACTGAGAAG+AGG | 0.560674 | 5_3:-47281560 | None:intergenic |
| CGTTCTCTTTGAATATCTTG+AGG | 0.562741 | 5_3:+47280540 | Msa0814820:CDS |
| TCCATCTCTTCCTACCTCAT+GGG | 0.564270 | 5_3:+47281583 | Msa0814820:CDS |
| TGAAGTAAAAGAACACTATG+AGG | 0.565587 | 5_3:+47280618 | Msa0814820:CDS |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5_3:+47280494 | Msa0814820:CDS |
| CTCAAGATATTCAAAGAGAA+CGG | 0.580373 | 5_3:-47280539 | None:intergenic |
| GGGATCGAGATTCATAAGAA+GGG | 0.590508 | 5_3:+47281380 | Msa0814820:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5_3:+47280483 | Msa0814820:CDS |
| TCTCTTCCTACCTCATGGGA+TGG | 0.596171 | 5_3:+47281587 | Msa0814820:CDS |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5_3:+47280648 | Msa0814820:CDS |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5_3:+47280652 | Msa0814820:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5_3:+47280488 | Msa0814820:CDS |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5_3:+47280553 | Msa0814820:CDS |
| AAATTTCCATCCCATGAGGT+AGG | 0.632795 | 5_3:-47281593 | None:intergenic |
| TTTGGAATCTCCCTTCAATG+AGG | 0.633691 | 5_3:-47281537 | None:intergenic |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5_3:+47280561 | Msa0814820:CDS |
| TGCCCTTATAGAGAAAAGGG+TGG | 0.670575 | 5_3:-47281616 | None:intergenic |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5_3:+47280495 | Msa0814820:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5_3:+47280785 | Msa0814820:CDS |
| GTGGAAATTTCCATCCCATG+AGG | 0.722495 | 5_3:-47281597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_3:47281007-47281026 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_3:47281006-47281025 | Msa0814820:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_3:47281007-47281026 | Msa0814820:intron | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_3:47281007-47281026 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_3:47281006-47281025 | Msa0814820:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_3:47281007-47281026 | Msa0814820:intron | 10.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_3:47280909-47280928 | None:intergenic | 15.0% |
| !!! | AGTCAATTTATTTTATATCA+TGG | - | chr5_3:47281321-47281340 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_3:47280909-47280928 | None:intergenic | 15.0% |
| !!! | AGTCAATTTATTTTATATCA+TGG | - | chr5_3:47281321-47281340 | None:intergenic | 15.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_3:47280483-47280502 | Msa0814820:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_3:47281078-47281097 | Msa0814820:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_3:47281207-47281226 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_3:47281206-47281225 | Msa0814820:intron | 20.0% |
| !! | CTATAAAAAAAAATGATGAG+AGG | - | chr5_3:47281347-47281366 | None:intergenic | 20.0% |
| !!! | CTCTCATCATTTTTTTTTAT+AGG | + | chr5_3:47281345-47281364 | Msa0814820:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_3:47281358-47281377 | Msa0814820:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_3:47281359-47281378 | Msa0814820:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_3:47280483-47280502 | Msa0814820:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_3:47281078-47281097 | Msa0814820:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_3:47281207-47281226 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_3:47281206-47281225 | Msa0814820:intron | 20.0% |
| !! | CTATAAAAAAAAATGATGAG+AGG | - | chr5_3:47281347-47281366 | None:intergenic | 20.0% |
| !!! | CTCTCATCATTTTTTTTTAT+AGG | + | chr5_3:47281345-47281364 | Msa0814820:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_3:47281358-47281377 | Msa0814820:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_3:47281359-47281378 | Msa0814820:intron | 20.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_3:47280691-47280710 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_3:47280697-47280716 | Msa0814820:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_3:47280754-47280773 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_3:47280756-47280775 | Msa0814820:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_3:47280857-47280876 | Msa0814820:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_3:47281044-47281063 | Msa0814820:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_3:47281192-47281211 | Msa0814820:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_3:47281200-47281219 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_3:47281274-47281293 | Msa0814820:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_3:47281360-47281379 | Msa0814820:intron | 25.0% |
| ! | TTAATGTACCATTTATGTGA+AGG | - | chr5_3:47281481-47281500 | None:intergenic | 25.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_3:47280691-47280710 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_3:47280697-47280716 | Msa0814820:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_3:47280754-47280773 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_3:47280756-47280775 | Msa0814820:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_3:47280857-47280876 | Msa0814820:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_3:47281044-47281063 | Msa0814820:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_3:47281192-47281211 | Msa0814820:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_3:47281200-47281219 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_3:47281274-47281293 | Msa0814820:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_3:47281360-47281379 | Msa0814820:intron | 25.0% |
| ! | TTAATGTACCATTTATGTGA+AGG | - | chr5_3:47281481-47281500 | None:intergenic | 25.0% |
| ! | TATTTGTGTTGTTCGTATGT+TGG | - | chr5_3:47280468-47280487 | None:intergenic | 30.0% |
| ACGAACAACACAAATAATGA+TGG | + | chr5_3:47280472-47280491 | Msa0814820:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+CGG | - | chr5_3:47280542-47280561 | None:intergenic | 30.0% | |
| TGAAGTAAAAGAACACTATG+AGG | + | chr5_3:47280618-47280637 | Msa0814820:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_3:47280751-47280770 | None:intergenic | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_3:47281157-47281176 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_3:47281158-47281177 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_3:47281273-47281292 | Msa0814820:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_3:47281387-47281406 | Msa0814820:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_3:47281470-47281489 | Msa0814820:CDS | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_3:47281527-47281546 | Msa0814820:CDS | 30.0% | |
| ! | TATTTGTGTTGTTCGTATGT+TGG | - | chr5_3:47280468-47280487 | None:intergenic | 30.0% |
| ACGAACAACACAAATAATGA+TGG | + | chr5_3:47280472-47280491 | Msa0814820:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+CGG | - | chr5_3:47280542-47280561 | None:intergenic | 30.0% | |
| TGAAGTAAAAGAACACTATG+AGG | + | chr5_3:47280618-47280637 | Msa0814820:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_3:47280751-47280770 | None:intergenic | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_3:47281157-47281176 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_3:47281158-47281177 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_3:47281273-47281292 | Msa0814820:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_3:47281387-47281406 | Msa0814820:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_3:47281470-47281489 | Msa0814820:CDS | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_3:47281527-47281546 | Msa0814820:CDS | 30.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_3:47280488-47280507 | Msa0814820:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_3:47280495-47280514 | Msa0814820:CDS | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | + | chr5_3:47280540-47280559 | Msa0814820:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_3:47280553-47280572 | Msa0814820:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_3:47280583-47280602 | Msa0814820:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_3:47280767-47280786 | Msa0814820:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_3:47280930-47280949 | Msa0814820:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_3:47280944-47280963 | Msa0814820:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_3:47280945-47280964 | Msa0814820:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_3:47281153-47281172 | Msa0814820:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_3:47281526-47281545 | Msa0814820:CDS | 35.0% | |
| ! | TTTCCACCCTTTTCTCTATA+AGG | + | chr5_3:47281613-47281632 | Msa0814820:CDS | 35.0% |
| ! | TTCCACCCTTTTCTCTATAA+GGG | + | chr5_3:47281614-47281633 | Msa0814820:CDS | 35.0% |
| AGTTGCCCTTATAGAGAAAA+GGG | - | chr5_3:47281622-47281641 | None:intergenic | 35.0% | |
| TAGTTGCCCTTATAGAGAAA+AGG | - | chr5_3:47281623-47281642 | None:intergenic | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_3:47280488-47280507 | Msa0814820:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_3:47280495-47280514 | Msa0814820:CDS | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | + | chr5_3:47280540-47280559 | Msa0814820:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_3:47280553-47280572 | Msa0814820:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_3:47280583-47280602 | Msa0814820:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_3:47280767-47280786 | Msa0814820:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_3:47280930-47280949 | Msa0814820:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_3:47280944-47280963 | Msa0814820:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_3:47280945-47280964 | Msa0814820:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_3:47281153-47281172 | Msa0814820:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_3:47281526-47281545 | Msa0814820:CDS | 35.0% | |
| ! | TTTCCACCCTTTTCTCTATA+AGG | + | chr5_3:47281613-47281632 | Msa0814820:CDS | 35.0% |
| ! | TTCCACCCTTTTCTCTATAA+GGG | + | chr5_3:47281614-47281633 | Msa0814820:CDS | 35.0% |
| AGTTGCCCTTATAGAGAAAA+GGG | - | chr5_3:47281622-47281641 | None:intergenic | 35.0% | |
| TAGTTGCCCTTATAGAGAAA+AGG | - | chr5_3:47281623-47281642 | None:intergenic | 35.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_3:47280494-47280513 | Msa0814820:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_3:47280785-47280804 | Msa0814820:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_3:47280950-47280969 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_3:47281380-47281399 | Msa0814820:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_3:47281463-47281482 | None:intergenic | 40.0% |
| ! | TTTGGAATCTCCCTTCAATG+AGG | - | chr5_3:47281540-47281559 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_3:47281553-47281572 | Msa0814820:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_3:47281563-47281582 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_3:47281596-47281615 | None:intergenic | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_3:47280494-47280513 | Msa0814820:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_3:47280785-47280804 | Msa0814820:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_3:47280950-47280969 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_3:47281380-47281399 | Msa0814820:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_3:47281463-47281482 | None:intergenic | 40.0% |
| ! | TTTGGAATCTCCCTTCAATG+AGG | - | chr5_3:47281540-47281559 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_3:47281553-47281572 | Msa0814820:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_3:47281563-47281582 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_3:47281596-47281615 | None:intergenic | 40.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_3:47280560-47280579 | Msa0814820:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_3:47280561-47280580 | Msa0814820:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_3:47280648-47280667 | Msa0814820:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_3:47280652-47280671 | Msa0814820:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_3:47280889-47280908 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_3:47281379-47281398 | Msa0814820:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_3:47281558-47281577 | None:intergenic | 45.0% | |
| TTCCATCTCTTCCTACCTCA+TGG | + | chr5_3:47281582-47281601 | Msa0814820:CDS | 45.0% | |
| TCCATCTCTTCCTACCTCAT+GGG | + | chr5_3:47281583-47281602 | Msa0814820:CDS | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_3:47281600-47281619 | None:intergenic | 45.0% | |
| TGCCCTTATAGAGAAAAGGG+TGG | - | chr5_3:47281619-47281638 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_3:47281650-47281669 | None:intergenic | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_3:47280560-47280579 | Msa0814820:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_3:47280561-47280580 | Msa0814820:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_3:47280648-47280667 | Msa0814820:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_3:47280652-47280671 | Msa0814820:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_3:47280889-47280908 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_3:47281379-47281398 | Msa0814820:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_3:47281558-47281577 | None:intergenic | 45.0% | |
| TTCCATCTCTTCCTACCTCA+TGG | + | chr5_3:47281582-47281601 | Msa0814820:CDS | 45.0% | |
| TCCATCTCTTCCTACCTCAT+GGG | + | chr5_3:47281583-47281602 | Msa0814820:CDS | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_3:47281600-47281619 | None:intergenic | 45.0% | |
| TGCCCTTATAGAGAAAAGGG+TGG | - | chr5_3:47281619-47281638 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_3:47281650-47281669 | None:intergenic | 45.0% | |
| !!! | ATATTTTAATAGAAAAAAAA+AGG | - | chr5_3:47281115-47281134 | None:intergenic | 5.0% |
| !!! | ATATTTTAATAGAAAAAAAA+AGG | - | chr5_3:47281115-47281134 | None:intergenic | 5.0% |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_3:47280875-47280894 | Msa0814820:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_3:47281446-47281465 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAAGAGA+TGG | - | chr5_3:47281587-47281606 | None:intergenic | 50.0% | |
| TCTCTTCCTACCTCATGGGA+TGG | + | chr5_3:47281587-47281606 | Msa0814820:CDS | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_3:47280875-47280894 | Msa0814820:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_3:47281446-47281465 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAAGAGA+TGG | - | chr5_3:47281587-47281606 | None:intergenic | 50.0% | |
| TCTCTTCCTACCTCATGGGA+TGG | + | chr5_3:47281587-47281606 | Msa0814820:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 47280448 | 47281676 | 47280448 | ID=Msa0814820;Name=Msa0814820 |
| chr5_3 | mRNA | 47280448 | 47281676 | 47280448 | ID=Msa0814820-mRNA-1;Parent=Msa0814820;Name=Msa0814820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|222 |
| chr5_3 | exon | 47280448 | 47280806 | 47280448 | ID=Msa0814820-mRNA-1:exon:14332;Parent=Msa0814820-mRNA-1 |
| chr5_3 | exon | 47281367 | 47281676 | 47281367 | ID=Msa0814820-mRNA-1:exon:14333;Parent=Msa0814820-mRNA-1 |
| chr5_3 | CDS | 47280448 | 47280806 | 47280448 | ID=Msa0814820-mRNA-1:cds;Parent=Msa0814820-mRNA-1 |
| chr5_3 | CDS | 47281367 | 47281676 | 47281367 | ID=Msa0814820-mRNA-1:cds;Parent=Msa0814820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
