Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814840 | XP_003616071.2 | 65.929 | 226 | 24 | 6 | 1 | 175 | 1 | 224 | 7.61e-90 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814840 | G7K5U8 | 65.929 | 226 | 24 | 6 | 1 | 175 | 1 | 224 | 3.64e-90 | 272 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0814840 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814840 | MtrunA17_Chr5g0432941 | 65.929 | 226 | 24 | 6 | 1 | 175 | 1 | 224 | 7.00e-94 | 272 |
| Msa0814840 | MtrunA17_Chr5g0432921 | 65.044 | 226 | 26 | 5 | 1 | 175 | 1 | 224 | 7.70e-93 | 269 |
| Msa0814840 | MtrunA17_Chr1g0192061 | 37.931 | 87 | 40 | 1 | 77 | 163 | 74 | 146 | 9.49e-13 | 63.2 |
| Msa0814840 | MtrunA17_Chr1g0162081 | 43.333 | 60 | 33 | 1 | 18 | 76 | 9 | 68 | 1.56e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTTCAACATTTAATT+AGG | 0.160392 | 5_3:-47334611 | None:intergenic |
| TTCCAAACCTCTTCTCAATA+AGG | 0.374395 | 5_3:+47334490 | Msa0814840:CDS |
| GTCCTTATTGAGAAGAGGTT+TGG | 0.377219 | 5_3:-47334492 | None:intergenic |
| AGCTTCATAAGAAGGGAAAC+TGG | 0.399075 | 5_3:+47334327 | Msa0814840:CDS |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5_3:+47328091 | Msa0814840:CDS |
| GAGCAATTTGGTGAAGGAAA+TGG | 0.431241 | 5_3:-47334412 | None:intergenic |
| TTTCTCTATAAGGACAACTA+TGG | 0.434127 | 5_3:+47334566 | Msa0814840:CDS |
| TAGTTGTCCTTATAGAGAAA+AGG | 0.436807 | 5_3:-47334563 | None:intergenic |
| TTTGAGCATGGCTAGCAACT+TGG | 0.459021 | 5_3:-47334388 | None:intergenic |
| CTTCAACATTACCTCATTGA+AGG | 0.462445 | 5_3:+47334463 | Msa0814840:CDS |
| GCATGGCTAGCAACTTGGCT+TGG | 0.477690 | 5_3:-47334383 | None:intergenic |
| TATTTGTGTTGTTCATATGT+TGG | 0.485712 | 5_3:-47327972 | None:intergenic |
| ATGAACAACACAAATAATGA+TGG | 0.488615 | 5_3:+47327979 | Msa0814840:CDS |
| GGGGCTCGAGCTTCATAAGA+AGG | 0.490160 | 5_3:+47334319 | Msa0814840:intron |
| CTCAAGATATTCAAAGAGAA+TGG | 0.491655 | 5_3:-47328046 | None:intergenic |
| AGTTGTCCTTATAGAGAAAA+GGG | 0.494242 | 5_3:-47334562 | None:intergenic |
| TCCCATGTAGGAGGAGGAGG+AGG | 0.498891 | 5_3:-47334527 | None:intergenic |
| TTCAACATTTAATTAGGATG+AGG | 0.499043 | 5_3:-47334605 | None:intergenic |
| GGAAGTAGAAGAAGGGTCGA+TGG | 0.504449 | 5_3:+47328068 | Msa0814840:intron |
| GGATGAGGAGAAGGAAGAGC+TGG | 0.513069 | 5_3:-47334590 | None:intergenic |
| CCATCCCATGTAGGAGGAGG+AGG | 0.520928 | 5_3:-47334530 | None:intergenic |
| CCTCCTCCTCCTACATGGGA+TGG | 0.522809 | 5_3:+47334530 | Msa0814840:CDS |
| GAAGTAGAAGAAGGGTCGAT+GGG | 0.524822 | 5_3:+47328069 | Msa0814840:intron |
| TTGATGGAGCAATTTGGTGA+AGG | 0.537093 | 5_3:-47334418 | None:intergenic |
| TTCAACATTACCTCATTGAA+GGG | 0.537386 | 5_3:+47334464 | Msa0814840:CDS |
| ATGTTGTCCTTATTGAGAAG+AGG | 0.563157 | 5_3:-47334497 | None:intergenic |
| CATTCTCTTTGAATATCTTG+AGG | 0.571841 | 5_3:+47328047 | Msa0814840:CDS |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5_3:+47328001 | Msa0814840:CDS |
| TGTAAATTTCCATCCCATGT+AGG | 0.582736 | 5_3:-47334539 | None:intergenic |
| ATTTAATTAGGATGAGGAGA+AGG | 0.589341 | 5_3:-47334599 | None:intergenic |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5_3:+47327990 | Msa0814840:CDS |
| TTTCCATCCCATGTAGGAGG+AGG | 0.598787 | 5_3:-47334533 | None:intergenic |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5_3:+47328156 | Msa0814840:CDS |
| ATCTTGAGGAAGTAGAAGAA+GGG | 0.607020 | 5_3:+47328061 | Msa0814840:intron |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5_3:+47328160 | Msa0814840:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5_3:+47327995 | Msa0814840:CDS |
| GGGCTCGAGCTTCATAAGAA+GGG | 0.619702 | 5_3:+47334320 | Msa0814840:CDS |
| TTTGGAATCTCCCTTCAATG+AGG | 0.633691 | 5_3:-47334474 | None:intergenic |
| AAATTTCCATCCCATGTAGG+AGG | 0.637692 | 5_3:-47334536 | None:intergenic |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5_3:+47328002 | Msa0814840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_3:47333763-47333782 | None:intergenic | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+AGG | + | chr5_3:47333763-47333782 | Msa0814840:intron | 10.0% |
| !! | TTATCAACAAATAAAAAAAA+GGG | + | chr5_3:47333764-47333783 | Msa0814840:intron | 10.0% |
| !! | ATAAAATCATAAAAAGTAAT+GGG | - | chr5_3:47333815-47333834 | None:intergenic | 10.0% |
| !! | AATAAAATCATAAAAAGTAA+TGG | - | chr5_3:47333816-47333835 | None:intergenic | 10.0% |
| !!! | CATAAATTTATTTTATATCA+TGG | - | chr5_3:47334082-47334101 | None:intergenic | 10.0% |
| !! | TATATTATGAAACAAGTAAA+AGG | + | chr5_3:47328348-47328367 | Msa0814840:intron | 15.0% |
| !! | TATATTATGAAACAAGTAAA+AGG | + | chr5_3:47328348-47328367 | Msa0814840:intron | 15.0% |
| !! | AAATTTATAAGATCTGATAA+TGG | - | chr5_3:47331043-47331062 | None:intergenic | 15.0% |
| !! | TTATCAGATCTTATAAATTT+AGG | + | chr5_3:47331043-47331062 | Msa0814840:intron | 15.0% |
| !! | TTATTATTAAAGGTAATATC+AGG | + | chr5_3:47331334-47331353 | Msa0814840:intron | 15.0% |
| !! | AAATAAGATTGAGTTTAAAA+TGG | + | chr5_3:47331662-47331681 | Msa0814840:intron | 15.0% |
| !!! | AATAAGATTGAGTTTAAAAT+GGG | + | chr5_3:47331663-47331682 | Msa0814840:intron | 15.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_3:47327990-47328009 | Msa0814840:CDS | 20.0% |
| !!! | AATGATTTGTTATTGATGAA+AGG | + | chr5_3:47328378-47328397 | Msa0814840:intron | 20.0% |
| !!! | AATGATTTGTTATTGATGAA+AGG | + | chr5_3:47328378-47328397 | Msa0814840:intron | 20.0% |
| !!! | GTTTTTATCTAAAATAACTC+AGG | - | chr5_3:47329274-47329293 | None:intergenic | 20.0% |
| !!! | TTGTTTAAAATCAAGGATTT+AGG | - | chr5_3:47329567-47329586 | None:intergenic | 20.0% |
| !! | AAACAATATCATCAAGAATA+GGG | + | chr5_3:47330459-47330478 | Msa0814840:intron | 20.0% |
| !! | ACTTTGAACAAAGAAATATT+AGG | + | chr5_3:47330755-47330774 | Msa0814840:intron | 20.0% |
| !! | CTTATACATTTAGATATTTG+GGG | - | chr5_3:47331229-47331248 | None:intergenic | 20.0% |
| !! | GCTTATACATTTAGATATTT+GGG | - | chr5_3:47331230-47331249 | None:intergenic | 20.0% |
| !! | AGCTTATACATTTAGATATT+TGG | - | chr5_3:47331231-47331250 | None:intergenic | 20.0% |
| !! | TAAATGTATAAGCTCAAAAT+TGG | + | chr5_3:47331237-47331256 | Msa0814840:intron | 20.0% |
| !! | ACAAGCATCTTTATTATTAA+AGG | + | chr5_3:47331324-47331343 | Msa0814840:intron | 20.0% |
| !! | TCATGTTTATTACAATTGAA+AGG | + | chr5_3:47331442-47331461 | Msa0814840:intron | 20.0% |
| !!! | ATAAGATTGAGTTTAAAATG+GGG | + | chr5_3:47331664-47331683 | Msa0814840:intron | 20.0% |
| !! | GCATAAATTTATTGACATTA+GGG | + | chr5_3:47332136-47332155 | Msa0814840:intron | 20.0% |
| !!! | AATGATTTGTTATTGATGAA+AGG | + | chr5_3:47328378-47328397 | Msa0814840:intron | 20.0% |
| !!! | TTATTTTTTTCTTCTTCATG+TGG | + | chr5_3:47333614-47333633 | Msa0814840:intron | 20.0% |
| !!! | TACTACCTTATTTCTTAAAT+TGG | + | chr5_3:47333954-47333973 | Msa0814840:intron | 20.0% |
| !! | AGTAATTGACTAACAAATAT+AGG | + | chr5_3:47334159-47334178 | Msa0814840:intron | 20.0% |
| !!! | CTTATTTTAGTCTTTTTTGA+TGG | - | chr5_3:47334437-47334456 | None:intergenic | 20.0% |
| !! | TATTTGTGTTGTTCATATGT+TGG | - | chr5_3:47327975-47327994 | None:intergenic | 25.0% |
| ! | ATGAACAACACAAATAATGA+TGG | + | chr5_3:47327979-47327998 | Msa0814840:CDS | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_3:47328205-47328224 | Msa0814840:intron | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_3:47328262-47328281 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_3:47328264-47328283 | Msa0814840:intron | 25.0% |
| ! | TAACAAAACATGAAAAGTCT+TGG | + | chr5_3:47328741-47328760 | Msa0814840:intron | 25.0% |
| ! | AACAAAACATGAAAAGTCTT+GGG | + | chr5_3:47328742-47328761 | Msa0814840:intron | 25.0% |
| !! | TTAGATTTACTTGATGATTC+AGG | - | chr5_3:47329468-47329487 | None:intergenic | 25.0% |
| !! | GGATTCATTGTTTAAAATCA+AGG | - | chr5_3:47329574-47329593 | None:intergenic | 25.0% |
| ! | AAAGGTTACAATCAAATTGA+AGG | - | chr5_3:47330014-47330033 | None:intergenic | 25.0% |
| ! | ATGAGAAACATAATGTGAAA+TGG | + | chr5_3:47330292-47330311 | Msa0814840:intron | 25.0% |
| ! | TGAGAAACATAATGTGAAAT+GGG | + | chr5_3:47330293-47330312 | Msa0814840:intron | 25.0% |
| ! | AACATAATCTTGCAAATAAG+AGG | + | chr5_3:47330343-47330362 | Msa0814840:intron | 25.0% |
| ! | GAAACAATATCATCAAGAAT+AGG | + | chr5_3:47330458-47330477 | Msa0814840:intron | 25.0% |
| ! | AACAATATCATCAAGAATAG+GGG | + | chr5_3:47330460-47330479 | Msa0814840:intron | 25.0% |
| ! | ATTTCTTTGTTCAAAGTTTG+TGG | - | chr5_3:47330752-47330771 | None:intergenic | 25.0% |
| ! | AAGTTTGGATTGATACAATA+AGG | + | chr5_3:47330889-47330908 | Msa0814840:intron | 25.0% |
| ! | AATATAAGATGACTCAAGAT+TGG | + | chr5_3:47331492-47331511 | Msa0814840:intron | 25.0% |
| ! | TCTTGATAAATGTATCATAC+AGG | - | chr5_3:47331596-47331615 | None:intergenic | 25.0% |
| ! | CATAGGTTTGATTCTATAAA+AGG | + | chr5_3:47331783-47331802 | Msa0814840:intron | 25.0% |
| ! | CATGTTACAACAATCAAATT+TGG | - | chr5_3:47331992-47332011 | None:intergenic | 25.0% |
| ! | CAAATTTGATTGTTGTAACA+TGG | + | chr5_3:47331990-47332009 | Msa0814840:intron | 25.0% |
| ! | GGCATAAATTTATTGACATT+AGG | + | chr5_3:47332135-47332154 | Msa0814840:intron | 25.0% |
| ! | CTTGAACAAAGTTTATTCTT+TGG | - | chr5_3:47332361-47332380 | None:intergenic | 25.0% |
| ! | CAAAGAATAAACTTTGTTCA+AGG | + | chr5_3:47332359-47332378 | Msa0814840:intron | 25.0% |
| ! | CAAATAATGCAATTTCTTAC+TGG | - | chr5_3:47332444-47332463 | None:intergenic | 25.0% |
| ! | TTATTTGATCTTCATTCCTA+TGG | + | chr5_3:47332457-47332476 | Msa0814840:intron | 25.0% |
| !! | ACTATTAACAATTTGAAGCA+AGG | - | chr5_3:47332612-47332631 | None:intergenic | 25.0% |
| ! | TTGCTTCAAATTGTTAATAG+TGG | + | chr5_3:47332611-47332630 | Msa0814840:intron | 25.0% |
| !! | CTTTTACTTGTTTCCTAATA+TGG | - | chr5_3:47333304-47333323 | None:intergenic | 25.0% |
| ! | CATATTAGGAAACAAGTAAA+AGG | + | chr5_3:47333302-47333321 | Msa0814840:intron | 25.0% |
| !!! | TTTACTGATTTCTCTTTCTA+CGG | - | chr5_3:47333666-47333685 | None:intergenic | 25.0% |
| !! | CGTACGTTTATTCTTTTATT+AGG | + | chr5_3:47333844-47333863 | Msa0814840:intron | 25.0% |
| ! | ACAATAAAAGTAATGATGCA+GGG | - | chr5_3:47333921-47333940 | None:intergenic | 25.0% |
| ! | AACAATAAAAGTAATGATGC+AGG | - | chr5_3:47333922-47333941 | None:intergenic | 25.0% |
| ! | TGACTCCAATTTAAGAAATA+AGG | - | chr5_3:47333962-47333981 | None:intergenic | 25.0% |
| ! | TTAAATTGGAGTCAAAAGAA+AGG | + | chr5_3:47333968-47333987 | Msa0814840:intron | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_3:47334034-47334053 | Msa0814840:intron | 25.0% |
| !!! | AAGTATTGATGATAAGATTG+AGG | + | chr5_3:47334135-47334154 | Msa0814840:intron | 25.0% |
| !! | AGAGGAAGTCAAATTTTTAT+GGG | - | chr5_3:47334270-47334289 | None:intergenic | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5_3:47334288-47334307 | None:intergenic | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5_3:47334285-47334304 | Msa0814840:intron | 25.0% |
| !! | TTTTTATAGGTTATTTGTCG+AGG | + | chr5_3:47334298-47334317 | Msa0814840:intron | 25.0% |
| !! | TTTTATAGGTTATTTGTCGA+GGG | + | chr5_3:47334299-47334318 | Msa0814840:intron | 25.0% |
| CTCAAGATATTCAAAGAGAA+TGG | - | chr5_3:47328049-47328068 | None:intergenic | 30.0% | |
| CATTCTCTTTGAATATCTTG+AGG | + | chr5_3:47328047-47328066 | Msa0814840:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_3:47328259-47328278 | None:intergenic | 30.0% |
| AATGTTTATCAAACCCAACT+TGG | + | chr5_3:47328717-47328736 | Msa0814840:intron | 30.0% | |
| !! | CATGTTTTGTTATCCAAGTT+GGG | - | chr5_3:47328733-47328752 | None:intergenic | 30.0% |
| !! | TCATGTTTTGTTATCCAAGT+TGG | - | chr5_3:47328734-47328753 | None:intergenic | 30.0% |
| TTTGTTCTTTCATGAAACAC+AGG | + | chr5_3:47328880-47328899 | Msa0814840:intron | 30.0% | |
| TTGTTCTTTCATGAAACACA+GGG | + | chr5_3:47328881-47328900 | Msa0814840:intron | 30.0% | |
| ! | TAGGAAGCTCTTTAATTTCA+TGG | - | chr5_3:47329086-47329105 | None:intergenic | 30.0% |
| TGCTATATCTTAATACTACC+AGG | - | chr5_3:47329332-47329351 | None:intergenic | 30.0% | |
| ATCTTCATTTACCATTCTTC+TGG | - | chr5_3:47329664-47329683 | None:intergenic | 30.0% | |
| ! | TGATGTTTTCTTCACAAACA+TGG | + | chr5_3:47329683-47329702 | Msa0814840:intron | 30.0% |
| AAGCTTCATAAGTCTTTGTA+TGG | - | chr5_3:47329795-47329814 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCACCATGAAGAA+AGG | + | chr5_3:47329875-47329894 | Msa0814840:intron | 30.0% |
| TTACAATCAAATTGAAGGCT+TGG | - | chr5_3:47330009-47330028 | None:intergenic | 30.0% | |
| AAGCAAGTAAACATGATTGT+TGG | - | chr5_3:47330199-47330218 | None:intergenic | 30.0% | |
| ATAATGTGAAATGGGATATG+TGG | + | chr5_3:47330301-47330320 | Msa0814840:intron | 30.0% | |
| GGTGAAGAAAAAGTAGTATT+AGG | + | chr5_3:47330431-47330450 | Msa0814840:intron | 30.0% | |
| GAAGAAAAAGTAGTATTAGG+TGG | + | chr5_3:47330434-47330453 | Msa0814840:intron | 30.0% | |
| ACAATATCATCAAGAATAGG+GGG | + | chr5_3:47330461-47330480 | Msa0814840:intron | 30.0% | |
| TGAGAAAAATATTCCCAATC+AGG | + | chr5_3:47330524-47330543 | Msa0814840:intron | 30.0% | |
| ! | TCTGGAATGAAGATCATATA+TGG | + | chr5_3:47330622-47330641 | Msa0814840:intron | 30.0% |
| ! | GGTTATAAGACTGGTTATAA+AGG | - | chr5_3:47330653-47330672 | None:intergenic | 30.0% |
| ! | ATTTTCTTGGGTTATAAGAC+TGG | - | chr5_3:47330662-47330681 | None:intergenic | 30.0% |
| ! | AGTCTTATAACCCAAGAAAA+TGG | + | chr5_3:47330661-47330680 | Msa0814840:intron | 30.0% |
| ! | GCTAGAAAATCCATTTTCTT+GGG | - | chr5_3:47330674-47330693 | None:intergenic | 30.0% |
| ! | AGCTAGAAAATCCATTTTCT+TGG | - | chr5_3:47330675-47330694 | None:intergenic | 30.0% |
| !!! | AAAATGGATTTTCTAGCTCT+AGG | + | chr5_3:47330677-47330696 | Msa0814840:intron | 30.0% |
| CATTGTTCTATGAGAATGTA+AGG | + | chr5_3:47330706-47330725 | Msa0814840:intron | 30.0% | |
| TTATGATGAAGCGTGAAATA+AGG | + | chr5_3:47330782-47330801 | Msa0814840:intron | 30.0% | |
| ! | TGATTTTGTAAGATAGGTGT+GGG | + | chr5_3:47330809-47330828 | Msa0814840:intron | 30.0% |
| ATAGCATATGACCAAAAAGA+TGG | + | chr5_3:47330863-47330882 | Msa0814840:intron | 30.0% | |
| AAGGTGGATAAATTGAATTC+AGG | + | chr5_3:47331016-47331035 | Msa0814840:intron | 30.0% | |
| AGGTGGATAAATTGAATTCA+GGG | + | chr5_3:47331017-47331036 | Msa0814840:intron | 30.0% | |
| TAATCATGAGAATGAAGTTC+TGG | + | chr5_3:47331086-47331105 | Msa0814840:intron | 30.0% | |
| TATGAAGAACTGGAAGTAAA+AGG | + | chr5_3:47331268-47331287 | Msa0814840:intron | 30.0% | |
| ! | ATCTTTGAAGATGATTGGTT+TGG | - | chr5_3:47331566-47331585 | None:intergenic | 30.0% |
| ! | CAACAATCTTTGAAGATGAT+TGG | - | chr5_3:47331571-47331590 | None:intergenic | 30.0% |
| CAATCATCTTCAAAGATTGT+TGG | + | chr5_3:47331569-47331588 | Msa0814840:intron | 30.0% | |
| AAATTGAAAGAAGCAAGTCA+AGG | + | chr5_3:47331618-47331637 | Msa0814840:intron | 30.0% | |
| ! | GTTTAAAATGGGGTGAATAA+AGG | + | chr5_3:47331674-47331693 | Msa0814840:intron | 30.0% |
| TTCTTTACCTAATGGTAACT+TGG | - | chr5_3:47331758-47331777 | None:intergenic | 30.0% | |
| ATGCATGTTTCTTTACCTAA+TGG | - | chr5_3:47331766-47331785 | None:intergenic | 30.0% | |
| TTAGGTAAAGAAACATGCAT+AGG | + | chr5_3:47331766-47331785 | Msa0814840:intron | 30.0% | |
| ! | TCACAAGTAAACCTTCATTT+TGG | - | chr5_3:47331864-47331883 | None:intergenic | 30.0% |
| TGTCAAGAAGATATAGAAAC+TGG | - | chr5_3:47332099-47332118 | None:intergenic | 30.0% | |
| ! | GATTTTTGTTACATGAAGCA+TGG | - | chr5_3:47332165-47332184 | None:intergenic | 30.0% |
| ! | AATCCACAGTATGATTTGTA+CGG | + | chr5_3:47332181-47332200 | Msa0814840:intron | 30.0% |
| AAATTAATGCCTCTGATTCA+AGG | - | chr5_3:47332272-47332291 | None:intergenic | 30.0% | |
| !! | AGAGGCATTAATTTGAATAG+AGG | + | chr5_3:47332278-47332297 | Msa0814840:intron | 30.0% |
| ! | TACTTCATTAAGTGTTTCTG+AGG | - | chr5_3:47332307-47332326 | None:intergenic | 30.0% |
| TTATTCTTTGGTTGTTCAAG+AGG | - | chr5_3:47332349-47332368 | None:intergenic | 30.0% | |
| GAATAAACTTTGTTCAAGGA+AGG | + | chr5_3:47332363-47332382 | Msa0814840:intron | 30.0% | |
| ACTGAAATGAAATCTCTTTG+GGG | - | chr5_3:47332564-47332583 | None:intergenic | 30.0% | |
| CACTGAAATGAAATCTCTTT+GGG | - | chr5_3:47332565-47332584 | None:intergenic | 30.0% | |
| TCACTGAAATGAAATCTCTT+TGG | - | chr5_3:47332566-47332585 | None:intergenic | 30.0% | |
| TATACGAATACGATCAACTT+TGG | + | chr5_3:47332647-47332666 | Msa0814840:intron | 30.0% | |
| GTATCACAAAACACAATAGT+TGG | + | chr5_3:47332708-47332727 | Msa0814840:intron | 30.0% | |
| GGAGTAATAGAAAGAGAATT+TGG | + | chr5_3:47332924-47332943 | Msa0814840:intron | 30.0% | |
| CATTCTTCTCTAAATTTCCA+TGG | - | chr5_3:47333009-47333028 | None:intergenic | 30.0% | |
| TGTGAAACTGAGAAAATCAA+TGG | + | chr5_3:47333092-47333111 | Msa0814840:intron | 30.0% | |
| TCAACGATCAAAATGATGAT+CGG | + | chr5_3:47333190-47333209 | Msa0814840:intron | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_3:47334033-47334052 | Msa0814840:intron | 30.0% | |
| TTCTCATTTGATCAACTAAC+AGG | + | chr5_3:47334107-47334126 | Msa0814840:intron | 30.0% | |
| GTGCAATGTTTAATCAAACT+AGG | + | chr5_3:47334183-47334202 | Msa0814840:intron | 30.0% | |
| ! | GAGGAAGTCAAATTTTTATG+GGG | - | chr5_3:47334269-47334288 | None:intergenic | 30.0% |
| ! | GAGAGGAAGTCAAATTTTTA+TGG | - | chr5_3:47334271-47334290 | None:intergenic | 30.0% |
| TTTATAGGTTATTTGTCGAG+GGG | + | chr5_3:47334300-47334319 | Msa0814840:intron | 30.0% | |
| !!! | TCTTTTTTGATGGAGCAATT+TGG | - | chr5_3:47334427-47334446 | None:intergenic | 30.0% |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_3:47334464-47334483 | Msa0814840:CDS | 30.0% | |
| ! | TTTACACCCTTTTCTCTATA+AGG | + | chr5_3:47334556-47334575 | Msa0814840:CDS | 30.0% |
| AGTTGTCCTTATAGAGAAAA+GGG | - | chr5_3:47334565-47334584 | None:intergenic | 30.0% | |
| TAGTTGTCCTTATAGAGAAA+AGG | - | chr5_3:47334566-47334585 | None:intergenic | 30.0% | |
| TTTCTCTATAAGGACAACTA+TGG | + | chr5_3:47334566-47334585 | Msa0814840:CDS | 30.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_3:47327995-47328014 | Msa0814840:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_3:47328002-47328021 | Msa0814840:CDS | 35.0% | |
| TATCTTGAGGAAGTAGAAGA+AGG | + | chr5_3:47328060-47328079 | Msa0814840:intron | 35.0% | |
| ATCTTGAGGAAGTAGAAGAA+GGG | + | chr5_3:47328061-47328080 | Msa0814840:intron | 35.0% | |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_3:47328091-47328110 | Msa0814840:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_3:47328275-47328294 | Msa0814840:intron | 35.0% | |
| AGCTATCATGTGCATACAAT+AGG | + | chr5_3:47328444-47328463 | Msa0814840:intron | 35.0% | |
| GCTATCATGTGCATACAATA+GGG | + | chr5_3:47328445-47328464 | Msa0814840:intron | 35.0% | |
| AGCTATCATGTGCATACAAT+AGG | + | chr5_3:47328444-47328463 | Msa0814840:intron | 35.0% | |
| GCTATCATGTGCATACAATA+GGG | + | chr5_3:47328445-47328464 | Msa0814840:intron | 35.0% | |
| TGAGCAAGTTACAGTTGTTA+GGG | - | chr5_3:47328628-47328647 | None:intergenic | 35.0% | |
| !! | TAACTTGCTCAGCAAGAAAT+AGG | + | chr5_3:47328637-47328656 | Msa0814840:intron | 35.0% |
| TTTATCAACCTCCAACTTGT+GGG | - | chr5_3:47328699-47328718 | None:intergenic | 35.0% | |
| ATTTATCAACCTCCAACTTG+TGG | - | chr5_3:47328700-47328719 | None:intergenic | 35.0% | |
| TTGTGAAGAAATCAGCAACT+TGG | + | chr5_3:47328776-47328795 | Msa0814840:intron | 35.0% | |
| ATGGATTCTGTATCTTCTCA+GGG | - | chr5_3:47328980-47328999 | None:intergenic | 35.0% | |
| ! | AATGGATTCTGTATCTTCTC+AGG | - | chr5_3:47328981-47329000 | None:intergenic | 35.0% |
| ! | GAAGCTCTTTAATTTCATGG+AGG | - | chr5_3:47329083-47329102 | None:intergenic | 35.0% |
| GACACTAGAAAATCCATTTC+TGG | - | chr5_3:47329123-47329142 | None:intergenic | 35.0% | |
| ! | AGGATTTTCAGATGCAGATT+GGG | - | chr5_3:47329157-47329176 | None:intergenic | 35.0% |
| ! | AAGGATTTTCAGATGCAGAT+TGG | - | chr5_3:47329158-47329177 | None:intergenic | 35.0% |
| !! | AAGGTAAGAGAAGTGTTTCT+AGG | + | chr5_3:47329180-47329199 | Msa0814840:intron | 35.0% |
| ! | AGAGTCTTAAAGTACCTCAA+AGG | - | chr5_3:47329231-47329250 | None:intergenic | 35.0% |
| TGTGTGATGAAAGTGATATC+TGG | + | chr5_3:47329306-47329325 | Msa0814840:intron | 35.0% | |
| TGTTCCTGCTTATAGAAGAT+TGG | - | chr5_3:47329364-47329383 | None:intergenic | 35.0% | |
| GTTAAGCTTCATCATGATTC+TGG | - | chr5_3:47329402-47329421 | None:intergenic | 35.0% | |
| AAGCTTAACTGATGAATCAG+AGG | + | chr5_3:47329413-47329432 | Msa0814840:intron | 35.0% | |
| AGCTTAACTGATGAATCAGA+GGG | + | chr5_3:47329414-47329433 | Msa0814840:intron | 35.0% | |
| ACACAAAGAAATGCCTGATT+TGG | + | chr5_3:47329503-47329522 | Msa0814840:intron | 35.0% | |
| !! | GGTCAGCTGAAATACTTTTT+AGG | - | chr5_3:47329546-47329565 | None:intergenic | 35.0% |
| ! | CACTCACATCAAATGTGTTT+TGG | - | chr5_3:47329595-47329614 | None:intergenic | 35.0% |
| ATCCACATAAACCAGAAGAA+TGG | + | chr5_3:47329650-47329669 | Msa0814840:intron | 35.0% | |
| !! | TACCATTCTTCTGGTTTATG+TGG | - | chr5_3:47329655-47329674 | None:intergenic | 35.0% |
| CATGACTCATGATTACATTC+AGG | - | chr5_3:47329724-47329743 | None:intergenic | 35.0% | |
| ! | GTCTTTGTATGGTTTGAAAC+AGG | - | chr5_3:47329784-47329803 | None:intergenic | 35.0% |
| GTTAACAATGCCTTTCTTCA+TGG | - | chr5_3:47329888-47329907 | None:intergenic | 35.0% | |
| CTTTGTCTTCAATTCACAAC+TGG | - | chr5_3:47329929-47329948 | None:intergenic | 35.0% | |
| TCAGTTGTAAGTTTAGCAAC+TGG | + | chr5_3:47329963-47329982 | Msa0814840:intron | 35.0% | |
| AAAGCTAGACTTGTAGCTAA+AGG | - | chr5_3:47330032-47330051 | None:intergenic | 35.0% | |
| !! | TCTAGCTTTGTATCTCTCAA+TGG | + | chr5_3:47330043-47330062 | Msa0814840:intron | 35.0% |
| AAGATCAAGTTTCATGCTGA+TGG | - | chr5_3:47330071-47330090 | None:intergenic | 35.0% | |
| CAACCAATATGCTTGACATT+TGG | + | chr5_3:47330104-47330123 | Msa0814840:intron | 35.0% | |
| AAGAAGGTGAATGGTGATAA+GGG | + | chr5_3:47330555-47330574 | Msa0814840:intron | 35.0% | |
| ! | CCAGAGAAATTTTTGTCTCT+AGG | - | chr5_3:47330607-47330626 | None:intergenic | 35.0% |
| CCTAGAGACAAAAATTTCTC+TGG | + | chr5_3:47330604-47330623 | Msa0814840:intron | 35.0% | |
| ! | GGAGAGTGATTTTGTAAGAT+AGG | + | chr5_3:47330803-47330822 | Msa0814840:intron | 35.0% |
| ! | GTGATTTTGTAAGATAGGTG+TGG | + | chr5_3:47330808-47330827 | Msa0814840:intron | 35.0% |
| GTGTGGGAACTCTATTAATA+AGG | + | chr5_3:47330825-47330844 | Msa0814840:intron | 35.0% | |
| ! | AATGCCATGAGAAGCATAAA+AGG | + | chr5_3:47330997-47331016 | Msa0814840:intron | 35.0% |
| !! | TTTTAAGAAGAATGACCCAG+AGG | + | chr5_3:47331134-47331153 | Msa0814840:intron | 35.0% |
| TCTGCTATGGTCATCTAAAA+TGG | + | chr5_3:47331159-47331178 | Msa0814840:intron | 35.0% | |
| ATATATATGTCCATGCACAG+AGG | + | chr5_3:47331189-47331208 | Msa0814840:intron | 35.0% | |
| AAAAGGTAAATGCTTGTGCT+TGG | + | chr5_3:47331285-47331304 | Msa0814840:intron | 35.0% | |
| AGATTGGAAGATTTGCATGA+AGG | + | chr5_3:47331508-47331527 | Msa0814840:intron | 35.0% | |
| GATTGGAAGATTTGCATGAA+GGG | + | chr5_3:47331509-47331528 | Msa0814840:intron | 35.0% | |
| !!! | TTGGTTTTAGCTTATCATGC+TGG | - | chr5_3:47331739-47331758 | None:intergenic | 35.0% |
| GCTAAAACCAAGTTACCATT+AGG | + | chr5_3:47331748-47331767 | Msa0814840:intron | 35.0% | |
| CTTGAATGATCAATTCTCTG+TGG | - | chr5_3:47332421-47332440 | None:intergenic | 35.0% | |
| CTAGAACTGCTAAATACCAT+AGG | - | chr5_3:47332476-47332495 | None:intergenic | 35.0% | |
| ! | ATGGTATTTAGCAGTTCTAG+AGG | + | chr5_3:47332476-47332495 | Msa0814840:intron | 35.0% |
| AGGATGAACACAAACACAAT+TGG | + | chr5_3:47332512-47332531 | Msa0814840:intron | 35.0% | |
| GGATGAACACAAACACAATT+GGG | + | chr5_3:47332513-47332532 | Msa0814840:intron | 35.0% | |
| ACACAAACACAATTGGGAAT+TGG | + | chr5_3:47332519-47332538 | Msa0814840:intron | 35.0% | |
| TGACACTGAATTAATAAGCC+AGG | + | chr5_3:47332743-47332762 | Msa0814840:intron | 35.0% | |
| CGATTCAAATCATCTTCATC+AGG | + | chr5_3:47332801-47332820 | Msa0814840:intron | 35.0% | |
| AAATCATCTTCATCAGGCAT+AGG | + | chr5_3:47332807-47332826 | Msa0814840:intron | 35.0% | |
| AATCATCTTCATCAGGCATA+GGG | + | chr5_3:47332808-47332827 | Msa0814840:intron | 35.0% | |
| AACAAGCTTGGTTTCATCAA+TGG | - | chr5_3:47332840-47332859 | None:intergenic | 35.0% | |
| TCTATTACTCCTAAGCTTAC+TGG | - | chr5_3:47332915-47332934 | None:intergenic | 35.0% | |
| AGAGAATTTGGATTCTCACT+AGG | + | chr5_3:47332936-47332955 | Msa0814840:intron | 35.0% | |
| GTATCAAGAGAAGAATTACG+AGG | + | chr5_3:47332981-47333000 | Msa0814840:intron | 35.0% | |
| GGAAATTTAGAGAAGAATGC+AGG | + | chr5_3:47333010-47333029 | Msa0814840:intron | 35.0% | |
| GAAGAAGATGAAGAAAAGCA+AGG | + | chr5_3:47333065-47333084 | Msa0814840:intron | 35.0% | |
| GAGAAAATCAATGGCGAAAA+AGG | + | chr5_3:47333101-47333120 | Msa0814840:intron | 35.0% | |
| GGAAAAACAAGAATCAACAC+CGG | + | chr5_3:47333156-47333175 | Msa0814840:intron | 35.0% | |
| AAGGTTGTTACGATCCATAA+CGG | - | chr5_3:47333254-47333273 | None:intergenic | 35.0% | |
| AGCTATCATGTGCATACAAT+AGG | + | chr5_3:47328444-47328463 | Msa0814840:intron | 35.0% | |
| GCTATCATGTGCATACAATA+GGG | + | chr5_3:47328445-47328464 | Msa0814840:intron | 35.0% | |
| TGAGCAAGTTACAGTTGTTA+GGG | - | chr5_3:47328628-47328647 | None:intergenic | 35.0% | |
| !! | TAACTTGCTCAGCAAGAAAT+AGG | + | chr5_3:47328637-47328656 | Msa0814840:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+GGG | + | chr5_3:47333701-47333720 | Msa0814840:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_3:47334463-47334482 | Msa0814840:CDS | 35.0% | |
| TTCCAAACCTCTTCTCAATA+AGG | + | chr5_3:47334490-47334509 | Msa0814840:CDS | 35.0% | |
| ATGTTGTCCTTATTGAGAAG+AGG | - | chr5_3:47334500-47334519 | None:intergenic | 35.0% | |
| TGTAAATTTCCATCCCATGT+AGG | - | chr5_3:47334542-47334561 | None:intergenic | 35.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_3:47328001-47328020 | Msa0814840:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_3:47328293-47328312 | Msa0814840:intron | 40.0% | |
| CTGAGCAAGTTACAGTTGTT+AGG | - | chr5_3:47328629-47328648 | None:intergenic | 40.0% | |
| TTATCAACCTCCAACTTGTG+GGG | - | chr5_3:47328698-47328717 | None:intergenic | 40.0% | |
| ATGAAAAGTCTTGGGAAGCA+AGG | + | chr5_3:47328750-47328769 | Msa0814840:intron | 40.0% | |
| !! | ACTTGGTCTTGAGAAGAAAC+TGG | + | chr5_3:47328793-47328812 | Msa0814840:intron | 40.0% |
| ATCAGAGAGAAGCTACATTC+TGG | - | chr5_3:47328835-47328854 | None:intergenic | 40.0% | |
| TTCATGAAACACAGGGTTAG+AGG | + | chr5_3:47328888-47328907 | Msa0814840:intron | 40.0% | |
| TGGTTGTCACAATAAAGCAC+AGG | + | chr5_3:47328928-47328947 | Msa0814840:intron | 40.0% | |
| ACAATAAAGCACAGGAAGCT+TGG | + | chr5_3:47328936-47328955 | Msa0814840:intron | 40.0% | |
| ! | AGCTCTGTATTCAGCTTTAG+AGG | + | chr5_3:47329026-47329045 | Msa0814840:intron | 40.0% |
| !! | TTCAGCTTTAGAGGAAGATC+TGG | + | chr5_3:47329035-47329054 | Msa0814840:intron | 40.0% |
| TCTGGTCAGTGTTTCTTCTT+AGG | - | chr5_3:47329105-47329124 | None:intergenic | 40.0% | |
| GAAGAAACACTGACCAGAAA+TGG | + | chr5_3:47329107-47329126 | Msa0814840:intron | 40.0% | |
| TGCATCTGAAAATCCTTGCA+AGG | + | chr5_3:47329161-47329180 | Msa0814840:intron | 40.0% | |
| AACACTTCTCTTACCTTGCA+AGG | - | chr5_3:47329177-47329196 | None:intergenic | 40.0% | |
| CCTGCTTATAGAAGATTGGT+AGG | - | chr5_3:47329360-47329379 | None:intergenic | 40.0% | |
| CCTACCAATCTTCTATAAGC+AGG | + | chr5_3:47329357-47329376 | Msa0814840:intron | 40.0% | |
| GCAGGAACATCATCATATAG+AGG | + | chr5_3:47329375-47329394 | Msa0814840:intron | 40.0% | |
| ! | CTTGATGATTCAGGCACTAT+AGG | - | chr5_3:47329459-47329478 | None:intergenic | 40.0% |
| GAAGTTGCACATTCCAAATC+AGG | - | chr5_3:47329519-47329538 | None:intergenic | 40.0% | |
| GTGGATGATATCATACTTGC+AGG | - | chr5_3:47329636-47329655 | None:intergenic | 40.0% | |
| CACAAACATGGAATGATCAG+AGG | + | chr5_3:47329695-47329714 | Msa0814840:intron | 40.0% | |
| GTAATCATGAGTCATGAGAG+TGG | + | chr5_3:47329728-47329747 | Msa0814840:intron | 40.0% | |
| TCTTTCATACCACTTCCTAC+TGG | + | chr5_3:47329758-47329777 | Msa0814840:intron | 40.0% | |
| TGAAGCTTGCAGACTTGATT+TGG | + | chr5_3:47329807-47329826 | Msa0814840:intron | 40.0% | |
| !! | CAGACTTGATTTGGTTTGTC+AGG | + | chr5_3:47329816-47329835 | Msa0814840:intron | 40.0% |
| ! | TCAAGCATATTGGTTGCAGA+TGG | - | chr5_3:47330100-47330119 | None:intergenic | 40.0% |
| CCACCAAATGTCAAGCATAT+TGG | - | chr5_3:47330110-47330129 | None:intergenic | 40.0% | |
| CCAATATGCTTGACATTTGG+TGG | + | chr5_3:47330107-47330126 | Msa0814840:intron | 40.0% | |
| AACTGGTACTTGGAAACTTG+TGG | - | chr5_3:47330138-47330157 | None:intergenic | 40.0% | |
| CTCTTGAGAAAACTGGTACT+TGG | - | chr5_3:47330148-47330167 | None:intergenic | 40.0% | |
| CTTCAAGCTCTTGAGAAAAC+TGG | - | chr5_3:47330155-47330174 | None:intergenic | 40.0% | |
| CTTGCTTCAGCATATGATGT+TGG | + | chr5_3:47330212-47330231 | Msa0814840:intron | 40.0% | |
| AGAGGAAGCAGTAATGTTTC+TGG | + | chr5_3:47330361-47330380 | Msa0814840:intron | 40.0% | |
| !! | AATGTTTCTGGTGGAATGTC+TGG | + | chr5_3:47330373-47330392 | Msa0814840:intron | 40.0% |
| !! | ATGTTTCTGGTGGAATGTCT+GGG | + | chr5_3:47330374-47330393 | Msa0814840:intron | 40.0% |
| !! | GAAGGAGAAGTATCAACAGA+AGG | + | chr5_3:47330488-47330507 | Msa0814840:intron | 40.0% |
| ! | GAAGTATCAACAGAAGGTGA+AGG | + | chr5_3:47330494-47330513 | Msa0814840:intron | 40.0% |
| ATATTCCCAATCAGGTGAAG+TGG | + | chr5_3:47330532-47330551 | Msa0814840:intron | 40.0% | |
| TTCTTCCACTTCACCTGATT+GGG | - | chr5_3:47330540-47330559 | None:intergenic | 40.0% | |
| GAAGAAGGTGAATGGTGATA+AGG | + | chr5_3:47330554-47330573 | Msa0814840:intron | 40.0% | |
| GTAAGGTTGAAGCATAACAG+AGG | + | chr5_3:47330723-47330742 | Msa0814840:intron | 40.0% | |
| GCATATGACCAAAAAGATGG+TGG | + | chr5_3:47330866-47330885 | Msa0814840:intron | 40.0% | |
| ! | CCAAACTTCCACCATCTTTT+TGG | - | chr5_3:47330877-47330896 | None:intergenic | 40.0% |
| !! | CCAAAAAGATGGTGGAAGTT+TGG | + | chr5_3:47330874-47330893 | Msa0814840:intron | 40.0% |
| ! | TCAACCCTACCATTTTGTTG+TGG | + | chr5_3:47330947-47330966 | Msa0814840:intron | 40.0% |
| !! | CAACCCTACCATTTTGTTGT+GGG | + | chr5_3:47330948-47330967 | Msa0814840:intron | 40.0% |
| !! | AACCCTACCATTTTGTTGTG+GGG | + | chr5_3:47330949-47330968 | Msa0814840:intron | 40.0% |
| AACCCCACAACAAAATGGTA+GGG | - | chr5_3:47330954-47330973 | None:intergenic | 40.0% | |
| AAACCCCACAACAAAATGGT+AGG | - | chr5_3:47330955-47330974 | None:intergenic | 40.0% | |
| GTTGAAACCCCACAACAAAA+TGG | - | chr5_3:47330959-47330978 | None:intergenic | 40.0% | |
| ! | TCCACCTTTTATGCTTCTCA+TGG | - | chr5_3:47331004-47331023 | None:intergenic | 40.0% |
| !! | ATGAAGTTCTGGACATGACT+AGG | + | chr5_3:47331097-47331116 | Msa0814840:intron | 40.0% |
| TTATCTGTTACCTCTGTGCA+TGG | - | chr5_3:47331202-47331221 | None:intergenic | 40.0% | |
| ATGCACAGAGGTAACAGATA+AGG | + | chr5_3:47331201-47331220 | Msa0814840:intron | 40.0% | |
| TGCACAGAGGTAACAGATAA+GGG | + | chr5_3:47331202-47331221 | Msa0814840:intron | 40.0% | |
| ! | GGTAGAAGCATATGAAGAAC+TGG | + | chr5_3:47331258-47331277 | Msa0814840:intron | 40.0% |
| AATGCTTGTGCTTGGCAAAA+TGG | + | chr5_3:47331293-47331312 | Msa0814840:intron | 40.0% | |
| TTGTACCTAATGATGCCTTG+TGG | - | chr5_3:47331417-47331436 | None:intergenic | 40.0% | |
| !! | GATTGGTTTGGCTAAACAAG+TGG | - | chr5_3:47331554-47331573 | None:intergenic | 40.0% |
| AGTCAAGGATTCACACACTT+TGG | + | chr5_3:47331633-47331652 | Msa0814840:intron | 40.0% | |
| AATGGGGTGAATAAAGGACA+TGG | + | chr5_3:47331680-47331699 | Msa0814840:intron | 40.0% | |
| GACATGGTGCAATGTAAACT+TGG | + | chr5_3:47331696-47331715 | Msa0814840:intron | 40.0% | |
| !!! | TCATTTTGGCTCATTGACTC+AGG | - | chr5_3:47331850-47331869 | None:intergenic | 40.0% |
| GAGTCAATGAGCCAAAATGA+AGG | + | chr5_3:47331850-47331869 | Msa0814840:intron | 40.0% | |
| !! | GATATACCTGCAGAAGTATC+AGG | + | chr5_3:47331901-47331920 | Msa0814840:intron | 40.0% |
| TCTTGAGAAAAACCAGCAGA+AGG | + | chr5_3:47332033-47332052 | Msa0814840:intron | 40.0% | |
| !! | ACTTCATCTTCTTCTGGTTC+AGG | - | chr5_3:47332075-47332094 | None:intergenic | 40.0% |
| ACTGGTACTTCATCTTCTTC+TGG | - | chr5_3:47332081-47332100 | None:intergenic | 40.0% | |
| CAACCGTACAAATCATACTG+TGG | - | chr5_3:47332187-47332206 | None:intergenic | 40.0% | |
| TCTGATTCAAGGAAACCTCA+AGG | - | chr5_3:47332261-47332280 | None:intergenic | 40.0% | |
| TTGAGGTTTCCTTGAATCAG+AGG | + | chr5_3:47332260-47332279 | Msa0814840:intron | 40.0% | |
| ACTTTGTTCAAGGAAGGAAG+AGG | + | chr5_3:47332369-47332388 | Msa0814840:intron | 40.0% | |
| ! | GTTTTGTGATACAGCACTTG+AGG | - | chr5_3:47332700-47332719 | None:intergenic | 40.0% |
| GCAATCATCTTGTTCAATCC+TGG | - | chr5_3:47332764-47332783 | None:intergenic | 40.0% | |
| !! | TGATTTGAATCGTGCTGCTT+GGG | - | chr5_3:47332793-47332812 | None:intergenic | 40.0% |
| ! | ATGATTTGAATCGTGCTGCT+TGG | - | chr5_3:47332794-47332813 | None:intergenic | 40.0% |
| CTGGTTCCAACTATATTGCA+TGG | - | chr5_3:47332896-47332915 | None:intergenic | 40.0% | |
| TAGTTGGAACCAGTAAGCTT+AGG | + | chr5_3:47332903-47332922 | Msa0814840:intron | 40.0% | |
| !!! | ATCGTTGATTCTCGCTTTTC+CGG | - | chr5_3:47333178-47333197 | None:intergenic | 40.0% |
| ATGATGATCGGAGAAGAAGA+AGG | + | chr5_3:47333202-47333221 | Msa0814840:intron | 40.0% | |
| AACGGTTACAGAAACCGTTA+TGG | + | chr5_3:47333237-47333256 | Msa0814840:intron | 40.0% | |
| TCGTAACAACCTTTCTCTGA+TGG | + | chr5_3:47333261-47333280 | Msa0814840:intron | 40.0% | |
| ACCTTTCTCTGATGGAGAAA+AGG | + | chr5_3:47333269-47333288 | Msa0814840:intron | 40.0% | |
| CTGAGCAAGTTACAGTTGTT+AGG | - | chr5_3:47328629-47328648 | None:intergenic | 40.0% | |
| !! | CACACCTTGGTTTTTCTGAA+AGG | + | chr5_3:47333700-47333719 | Msa0814840:intron | 40.0% |
| TGTCCCTTTCAGAAAAACCA+AGG | - | chr5_3:47333707-47333726 | None:intergenic | 40.0% | |
| AGCTTCATAAGAAGGGAAAC+TGG | + | chr5_3:47334327-47334346 | Msa0814840:CDS | 40.0% | |
| !!! | GAAGGAAATGGTTTTGAGCA+TGG | - | chr5_3:47334403-47334422 | None:intergenic | 40.0% |
| ! | GAGCAATTTGGTGAAGGAAA+TGG | - | chr5_3:47334415-47334434 | None:intergenic | 40.0% |
| ! | TTGATGGAGCAATTTGGTGA+AGG | - | chr5_3:47334421-47334440 | None:intergenic | 40.0% |
| ! | TTTGGAATCTCCCTTCAATG+AGG | - | chr5_3:47334477-47334496 | None:intergenic | 40.0% |
| GTCCTTATTGAGAAGAGGTT+TGG | - | chr5_3:47334495-47334514 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGTAGG+AGG | - | chr5_3:47334539-47334558 | None:intergenic | 40.0% | |
| GAAGTAGAAGAAGGGTCGAT+GGG | + | chr5_3:47328069-47328088 | Msa0814840:intron | 45.0% | |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_3:47328156-47328175 | Msa0814840:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_3:47328160-47328179 | Msa0814840:CDS | 45.0% | |
| TGTAATATCCCCCCACAAGT+TGG | + | chr5_3:47328685-47328704 | Msa0814840:intron | 45.0% | |
| TATCAACCTCCAACTTGTGG+GGG | - | chr5_3:47328697-47328716 | None:intergenic | 45.0% | |
| AGGGTTAGAGGCAATGTGAA+TGG | + | chr5_3:47328900-47328919 | Msa0814840:intron | 45.0% | |
| ! | TTTTCAGATGCAGATTGGGC+TGG | - | chr5_3:47329153-47329172 | None:intergenic | 45.0% |
| GGAAAGAACAAACCATTGCC+TGG | + | chr5_3:47329201-47329220 | Msa0814840:intron | 45.0% | |
| AAGTACCTCAAAGGTTGTCC+AGG | - | chr5_3:47329222-47329241 | None:intergenic | 45.0% | |
| GATGAAAGTGATATCTGGCC+TGG | + | chr5_3:47329311-47329330 | Msa0814840:intron | 45.0% | |
| AACTGATGAATCAGAGGGAG+TGG | + | chr5_3:47329419-47329438 | Msa0814840:intron | 45.0% | |
| ATCATGAGTCATGAGAGTGG+AGG | + | chr5_3:47329731-47329750 | Msa0814840:intron | 45.0% | |
| ! | ATGGTTTGAAACAGGCCAGT+AGG | - | chr5_3:47329776-47329795 | None:intergenic | 45.0% |
| GTTTGTCAGGTTTGATGCCT+GGG | + | chr5_3:47329829-47329848 | Msa0814840:intron | 45.0% | |
| TTTGTCAGGTTTGATGCCTG+GGG | + | chr5_3:47329830-47329849 | Msa0814840:intron | 45.0% | |
| AGCTTGAAGTTCAGCTTGCA+TGG | + | chr5_3:47330166-47330185 | Msa0814840:intron | 45.0% | |
| !! | TCAGCATATGATGTTGGCTC+TGG | + | chr5_3:47330218-47330237 | Msa0814840:intron | 45.0% |
| !! | GGAAGCAGTAATGTTTCTGG+TGG | + | chr5_3:47330364-47330383 | Msa0814840:intron | 45.0% |
| GTGGAATGTCTGGGAACAAA+GGG | + | chr5_3:47330383-47330402 | Msa0814840:intron | 45.0% | |
| AACAGGTGAAGAAGGAGGAA+TGG | + | chr5_3:47330409-47330428 | Msa0814840:intron | 45.0% | |
| ACAGGTGAAGAAGGAGGAAT+GGG | + | chr5_3:47330410-47330429 | Msa0814840:intron | 45.0% | |
| TCAAGAATAGGGGGTTGTGA+AGG | + | chr5_3:47330470-47330489 | Msa0814840:intron | 45.0% | |
| CTTCTTCCACTTCACCTGAT+TGG | - | chr5_3:47330541-47330560 | None:intergenic | 45.0% | |
| CAATCAGGTGAAGTGGAAGA+AGG | + | chr5_3:47330539-47330558 | Msa0814840:intron | 45.0% | |
| GTGAAGTGGAAGAAGGTGAA+TGG | + | chr5_3:47330546-47330565 | Msa0814840:intron | 45.0% | |
| GTGAATGGTGATAAGGGAGA+TGG | + | chr5_3:47330561-47330580 | Msa0814840:intron | 45.0% | |
| ! | GCCATGAGAAGCATAAAAGG+TGG | + | chr5_3:47331000-47331019 | Msa0814840:intron | 45.0% |
| TGACCATAGCAGATTCCTCT+GGG | - | chr5_3:47331152-47331171 | None:intergenic | 45.0% | |
| ATGACCATAGCAGATTCCTC+TGG | - | chr5_3:47331153-47331172 | None:intergenic | 45.0% | |
| ! | ACCAAGTCTAAAGTGCCACA+AGG | + | chr5_3:47331399-47331418 | Msa0814840:intron | 45.0% |
| ! | AAGTGCCACAAGGCATCATT+AGG | + | chr5_3:47331409-47331428 | Msa0814840:intron | 45.0% |
| GGTTTGGCTAAACAAGTGGA+TGG | - | chr5_3:47331550-47331569 | None:intergenic | 45.0% | |
| ! | AGTATCAGGTGTTGCAATGC+TGG | + | chr5_3:47331915-47331934 | Msa0814840:intron | 45.0% |
| ! | GTTGCAGAAAGTGCAGAATC+TGG | + | chr5_3:47332203-47332222 | Msa0814840:intron | 45.0% |
| ! | CAGAAAGTGCAGAATCTGGT+TGG | + | chr5_3:47332207-47332226 | Msa0814840:intron | 45.0% |
| GTGATACAGCACTTGAGGTT+TGG | - | chr5_3:47332695-47332714 | None:intergenic | 45.0% | |
| ATCTTCATCAGGCATAGGGA+TGG | + | chr5_3:47332812-47332831 | Msa0814840:intron | 45.0% | |
| TTGGGAACGAAGAACAAGCT+TGG | - | chr5_3:47332852-47332871 | None:intergenic | 45.0% | |
| CTATATTGCATGGAGTCGCA+CGG | - | chr5_3:47332886-47332905 | None:intergenic | 45.0% | |
| GCGACTCCATGCAATATAGT+TGG | + | chr5_3:47332887-47332906 | Msa0814840:intron | 45.0% | |
| ACCACAAGAAGCAAGAATCG+CGG | + | chr5_3:47333132-47333151 | Msa0814840:intron | 45.0% | |
| ! | GCCTTTTCTCCATCAGAGAA+AGG | - | chr5_3:47333273-47333292 | None:intergenic | 45.0% |
| AAGGCGCGTGATACCATATT+AGG | + | chr5_3:47333288-47333307 | Msa0814840:intron | 45.0% | |
| TGTGGACGAGTCTTTATGCA+TGG | + | chr5_3:47333632-47333651 | Msa0814840:intron | 45.0% | |
| CCAAGGTGTGCTTCGAATAA+AGG | - | chr5_3:47333690-47333709 | None:intergenic | 45.0% | |
| CCTTTATTCGAAGCACACCT+TGG | + | chr5_3:47333687-47333706 | Msa0814840:intron | 45.0% | |
| TTTGAGCATGGCTAGCAACT+TGG | - | chr5_3:47334391-47334410 | None:intergenic | 45.0% | |
| GGAAGTAGAAGAAGGGTCGA+TGG | + | chr5_3:47328068-47328087 | Msa0814840:intron | 50.0% | |
| ! | AATATCCCCCCACAAGTTGG+AGG | + | chr5_3:47328688-47328707 | Msa0814840:intron | 50.0% |
| ATCAACCTCCAACTTGTGGG+GGG | - | chr5_3:47328696-47328715 | None:intergenic | 50.0% | |
| AGGCAATGTGAATGGCACTC+TGG | + | chr5_3:47328908-47328927 | Msa0814840:intron | 50.0% | |
| ! | CTGCTACTTGCGAGCTTCAA+TGG | - | chr5_3:47328999-47329018 | None:intergenic | 50.0% |
| CTCAAAGGTTGTCCAGGCAA+TGG | - | chr5_3:47329216-47329235 | None:intergenic | 50.0% | |
| CATTGCCTGGACAACCTTTG+AGG | + | chr5_3:47329214-47329233 | Msa0814840:intron | 50.0% | |
| GAATCAGAGGGAGTGGATAC+AGG | + | chr5_3:47329426-47329445 | Msa0814840:intron | 50.0% | |
| AGAGGGAGTGGATACAGGTT+TGG | + | chr5_3:47329431-47329450 | Msa0814840:intron | 50.0% | |
| ACTTGCAGGCAACTCTCTTC+AGG | - | chr5_3:47329622-47329641 | None:intergenic | 50.0% | |
| TGAAACAGGCCAGTAGGAAG+TGG | - | chr5_3:47329770-47329789 | None:intergenic | 50.0% | |
| GGTTTGTCAGGTTTGATGCC+TGG | + | chr5_3:47329828-47329847 | Msa0814840:intron | 50.0% | |
| TTGTCAGGTTTGATGCCTGG+GGG | + | chr5_3:47329831-47329850 | Msa0814840:intron | 50.0% | |
| GTGTACATGATAGTTCCCCC+AGG | - | chr5_3:47329849-47329868 | None:intergenic | 50.0% | |
| !! | TTGGCTCTGGTTGAGAGTGA+AGG | + | chr5_3:47330231-47330250 | Msa0814840:intron | 50.0% |
| !! | TGGCTCTGGTTGAGAGTGAA+GGG | + | chr5_3:47330232-47330251 | Msa0814840:intron | 50.0% |
| GGTGGAATGTCTGGGAACAA+AGG | + | chr5_3:47330382-47330401 | Msa0814840:intron | 50.0% | |
| AAGGGAGCAACAGGTGAAGA+AGG | + | chr5_3:47330401-47330420 | Msa0814840:intron | 50.0% | |
| TGACCCAGAGGAATCTGCTA+TGG | + | chr5_3:47331146-47331165 | Msa0814840:intron | 50.0% | |
| GCCTTGTGGCACTTTAGACT+TGG | - | chr5_3:47331403-47331422 | None:intergenic | 50.0% | |
| GCAACACCTGATACTTCTGC+AGG | - | chr5_3:47331910-47331929 | None:intergenic | 50.0% | |
| TCTGCAAGTTCTCCTTCTGC+TGG | - | chr5_3:47332048-47332067 | None:intergenic | 50.0% | |
| TGACAAGCAGCATTAGCACG+AGG | + | chr5_3:47332114-47332133 | Msa0814840:intron | 50.0% | |
| AAACCTCAAGGTCGTGGCAA+GGG | - | chr5_3:47332249-47332268 | None:intergenic | 50.0% | |
| TCAAGGAAACCTCAAGGTCG+TGG | - | chr5_3:47332255-47332274 | None:intergenic | 50.0% | |
| CTAGAGGCTATGCAACGACA+AGG | + | chr5_3:47332492-47332511 | Msa0814840:intron | 50.0% | |
| CGCACGGTTGAACGTTCTTT+GGG | - | chr5_3:47332870-47332889 | None:intergenic | 50.0% | |
| TCGCACGGTTGAACGTTCTT+TGG | - | chr5_3:47332871-47332890 | None:intergenic | 50.0% | |
| ! | AGAAGAATTACGAGGCGCCA+TGG | + | chr5_3:47332989-47333008 | Msa0814840:intron | 50.0% |
| ACCGCGATTCTTGCTTCTTG+TGG | - | chr5_3:47333136-47333155 | None:intergenic | 50.0% | |
| ACAAGAAGCAAGAATCGCGG+TGG | + | chr5_3:47333135-47333154 | Msa0814840:intron | 50.0% | |
| ! | AGAAGGTGCAGCGGAGAAAA+CGG | + | chr5_3:47333219-47333238 | Msa0814840:intron | 50.0% |
| GGGCTCGAGCTTCATAAGAA+GGG | + | chr5_3:47334320-47334339 | Msa0814840:CDS | 50.0% | |
| TTTCCATCCCATGTAGGAGG+AGG | - | chr5_3:47334536-47334555 | None:intergenic | 50.0% | |
| CTGGGAACAAAGGGAGCAAC+AGG | + | chr5_3:47330392-47330411 | Msa0814840:intron | 55.0% | |
| GGAGCAACAGGTGAAGAAGG+AGG | + | chr5_3:47330404-47330423 | Msa0814840:intron | 55.0% | |
| GGTCGTGGCAAGGGTTCTTA+TGG | - | chr5_3:47332240-47332259 | None:intergenic | 55.0% | |
| GAAACCTCAAGGTCGTGGCA+AGG | - | chr5_3:47332250-47332269 | None:intergenic | 55.0% | |
| ! | CGGAGAAGAAGAAGGTGCAG+CGG | + | chr5_3:47333210-47333229 | Msa0814840:intron | 55.0% |
| GGGGCTCGAGCTTCATAAGA+AGG | + | chr5_3:47334319-47334338 | Msa0814840:intron | 55.0% | |
| GCATGGCTAGCAACTTGGCT+TGG | - | chr5_3:47334386-47334405 | None:intergenic | 55.0% | |
| TCCTCCTCCTCCTCCTACAT+GGG | + | chr5_3:47334526-47334545 | Msa0814840:CDS | 55.0% | |
| GGATGAGGAGAAGGAAGAGC+TGG | - | chr5_3:47334593-47334612 | None:intergenic | 55.0% | |
| GAACCCTTGCCACGACCTTG+AGG | + | chr5_3:47332243-47332262 | Msa0814840:intron | 60.0% | |
| GTAGGAGGAGGAGGAGGAGA+TGG | - | chr5_3:47334524-47334543 | None:intergenic | 60.0% | |
| CTCCTCCTCCTCCTCCTACA+TGG | + | chr5_3:47334525-47334544 | Msa0814840:CDS | 60.0% | |
| TCCCATGTAGGAGGAGGAGG+AGG | - | chr5_3:47334530-47334549 | None:intergenic | 60.0% | |
| CCATCCCATGTAGGAGGAGG+AGG | - | chr5_3:47334533-47334552 | None:intergenic | 60.0% | |
| CCTCCTCCTCCTACATGGGA+TGG | + | chr5_3:47334530-47334549 | Msa0814840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 47327955 | 47334619 | 47327955 | ID=Msa0814840;Name=Msa0814840 |
| chr5_3 | mRNA | 47327955 | 47334619 | 47327955 | ID=Msa0814840-mRNA-1;Parent=Msa0814840;Name=Msa0814840-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|0|0|3|0|175 |
| chr5_3 | exon | 47327955 | 47328071 | 47327955 | ID=Msa0814840-mRNA-1:exon:14334;Parent=Msa0814840-mRNA-1 |
| chr5_3 | exon | 47328076 | 47328186 | 47328076 | ID=Msa0814840-mRNA-1:exon:14335;Parent=Msa0814840-mRNA-1 |
| chr5_3 | exon | 47334320 | 47334619 | 47334320 | ID=Msa0814840-mRNA-1:exon:14336;Parent=Msa0814840-mRNA-1 |
| chr5_3 | CDS | 47327955 | 47328071 | 47327955 | ID=Msa0814840-mRNA-1:cds;Parent=Msa0814840-mRNA-1 |
| chr5_3 | CDS | 47328076 | 47328186 | 47328076 | ID=Msa0814840-mRNA-1:cds;Parent=Msa0814840-mRNA-1 |
| chr5_3 | CDS | 47334320 | 47334619 | 47334320 | ID=Msa0814840-mRNA-1:cds;Parent=Msa0814840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
