Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815720 | AES99202.1 | 76.437 | 174 | 31 | 1 | 16 | 179 | 5 | 178 | 2.08e-89 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815720 | G7KG15 | 76.437 | 174 | 31 | 1 | 16 | 179 | 5 | 178 | 9.91e-90 | 272 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0815720 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815720 | MtrunA17_Chr5g0434331 | 78.443 | 167 | 26 | 1 | 23 | 179 | 32 | 198 | 1.28e-92 | 271 |
| Msa0815720 | MtrunA17_Chr8g0386511 | 39.130 | 92 | 54 | 1 | 73 | 162 | 16 | 107 | 1.68e-15 | 71.6 |
| Msa0815720 | MtrunA17_Chr2g0297251 | 31.818 | 132 | 77 | 4 | 33 | 153 | 36 | 165 | 1.64e-13 | 68.2 |
| Msa0815720 | MtrunA17_Chr1g0179781 | 25.862 | 174 | 108 | 6 | 34 | 191 | 7 | 175 | 9.74e-13 | 65.1 |
| Msa0815720 | MtrunA17_Chr7g0230511 | 27.820 | 133 | 78 | 4 | 34 | 153 | 9 | 136 | 5.84e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815720 | AT2G01818.1 | 29.282 | 181 | 92 | 6 | 36 | 192 | 13 | 181 | 3.41e-13 | 67.0 |
| Msa0815720 | AT1G31040.1 | 29.412 | 136 | 86 | 3 | 33 | 159 | 18 | 152 | 9.55e-13 | 66.2 |
Find 48 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTACATGTAAATATTTC+CGG | 0.224765 | 5_3:+49406045 | Msa0815720:CDS |
| TATCAACTGCTCCAAGATTA+AGG | 0.334487 | 5_3:+49408358 | Msa0815720:CDS |
| AGAATCTGCTTGCCGGTATA+TGG | 0.349756 | 5_3:+49408242 | Msa0815720:CDS |
| TCACCAGCCAAAGTGGCTTC+AGG | 0.350529 | 5_3:+49408134 | Msa0815720:CDS |
| TGAAGGAGTTTGCGTTAGTT+GGG | 0.369168 | 5_3:+49410315 | Msa0815720:CDS |
| TTGAAGGAGTTTGCGTTAGT+TGG | 0.372689 | 5_3:+49410314 | Msa0815720:CDS |
| ATTTACATGTAAATATTTCC+GGG | 0.375536 | 5_3:+49406046 | Msa0815720:CDS |
| TTTGCTGTTGCGGAAGTTGT+AGG | 0.377058 | 5_3:+49410215 | Msa0815720:CDS |
| GACACATCATCATGCGGCTT+TGG | 0.388033 | 5_3:+49409881 | Msa0815720:CDS |
| ATTGCAAAGAATCTGCTTGC+CGG | 0.399091 | 5_3:+49408235 | Msa0815720:CDS |
| ATAGTAGAATACCTTAATCT+TGG | 0.415338 | 5_3:-49408369 | None:intergenic |
| AATCCTGAAGCCACTTTGGC+TGG | 0.443360 | 5_3:-49408137 | None:intergenic |
| AGCAATACAAATGCAACAAC+CGG | 0.449608 | 5_3:+49409816 | Msa0815720:intron |
| TGGCTGGTGAACTTCACGTT+GGG | 0.459890 | 5_3:-49408121 | None:intergenic |
| ACTTTCTTTGATCAGAAGAA+AGG | 0.463053 | 5_3:-49410177 | None:intergenic |
| CTGAAGATTCAATTCCTACT+CGG | 0.475908 | 5_3:+49410092 | Msa0815720:CDS |
| GAAGGAGTTTGCGTTAGTTG+GGG | 0.495720 | 5_3:+49410316 | Msa0815720:CDS |
| TATATGACTGCATAGTAGTA+AGG | 0.513325 | 5_3:-49408337 | None:intergenic |
| AAACTTCTGAGCCTCAGAAA+AGG | 0.514174 | 5_3:+49410127 | Msa0815720:CDS |
| GTACTGCTCCATTGCTTGCA+AGG | 0.516727 | 5_3:+49409937 | Msa0815720:CDS |
| TTTGGCAGCAGAAACTCAAA+TGG | 0.521805 | 5_3:+49409899 | Msa0815720:CDS |
| CCCACGATGTGGATCAGCAT+TGG | 0.527266 | 5_3:+49409856 | Msa0815720:CDS |
| TTGGCTGGTGAACTTCACGT+TGG | 0.528347 | 5_3:-49408122 | None:intergenic |
| TTGCTGTTGCGGAAGTTGTA+GGG | 0.538027 | 5_3:+49410216 | Msa0815720:CDS |
| TTCCCTTGTGATTCCCGAGT+AGG | 0.541037 | 5_3:-49410106 | None:intergenic |
| AAATATTTCCGGGGTTGTGA+TGG | 0.541116 | 5_3:+49406056 | Msa0815720:CDS |
| GTTCTGCTCATTTAGATCGA+AGG | 0.554273 | 5_3:+49408187 | Msa0815720:CDS |
| TGAAGATTCAATTCCTACTC+GGG | 0.557663 | 5_3:+49410093 | Msa0815720:CDS |
| CCTCAGAAAAGGAAACGAAA+AGG | 0.571203 | 5_3:+49410138 | Msa0815720:CDS |
| CCTGATGATAGACCATATAC+CGG | 0.575296 | 5_3:-49408254 | None:intergenic |
| ATCTCTAACCATCACAACCC+CGG | 0.581520 | 5_3:-49406064 | None:intergenic |
| GATATATATCTTTGCTGTTG+CGG | 0.581997 | 5_3:+49410205 | Msa0815720:CDS |
| GTGAAGTTCACCAGCCAAAG+TGG | 0.592642 | 5_3:+49408127 | Msa0815720:CDS |
| AGTCATCACCTTGCAAGCAA+TGG | 0.595069 | 5_3:-49409945 | None:intergenic |
| CTGCATCGTCTCCCACGATG+TGG | 0.599916 | 5_3:+49409845 | Msa0815720:CDS |
| ATTCCTACTCGGGAATCACA+AGG | 0.608310 | 5_3:+49410103 | Msa0815720:CDS |
| AAGGAGTTTGCGTTAGTTGG+GGG | 0.617151 | 5_3:+49410317 | Msa0815720:CDS |
| ATACAAATGCAACAACCGGC+GGG | 0.618184 | 5_3:+49409820 | Msa0815720:CDS |
| TAATTTGTAGGATGAGCAAG+TGG | 0.626865 | 5_3:+49408098 | Msa0815720:intron |
| TTTACATGTAAATATTTCCG+GGG | 0.629916 | 5_3:+49406047 | Msa0815720:CDS |
| CCAATGCTGATCCACATCGT+GGG | 0.635092 | 5_3:-49409856 | None:intergenic |
| AATACAAATGCAACAACCGG+CGG | 0.635554 | 5_3:+49409819 | Msa0815720:CDS |
| GGAGACGATGCAGAACCCGC+CGG | 0.642418 | 5_3:-49409835 | None:intergenic |
| TTCCTACTCGGGAATCACAA+GGG | 0.648405 | 5_3:+49410104 | Msa0815720:CDS |
| TCCAATGCTGATCCACATCG+TGG | 0.660274 | 5_3:-49409857 | None:intergenic |
| TTGGATGACACATCATCATG+CGG | 0.687565 | 5_3:+49409875 | Msa0815720:CDS |
| AGTTTATAAATATATGCACA+AGG | 0.697960 | 5_3:+49408304 | Msa0815720:CDS |
| CAGAAGAAAGGAGCTCTGTG+TGG | 0.766323 | 5_3:-49410165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTCATTTTATTTTATTT+TGG | - | chr5_3:49407770-49407789 | None:intergenic | 10.0% |
| !!! | TTTCAAAATATAATTTTTCT+CGG | - | chr5_3:49407987-49408006 | None:intergenic | 10.0% |
| !!! | AATATTCAATTTTTATTGTA+TGG | - | chr5_3:49408974-49408993 | None:intergenic | 10.0% |
| !! | AAAAAATTTGATATAGTTTA+TGG | + | chr5_3:49409539-49409558 | Msa0815720:intron | 10.0% |
| !! | TGAATATTTATTGAAATTTC+AGG | + | chr5_3:49406004-49406023 | Msa0815720:intron | 15.0% |
| !! | GAATATTTATTGAAATTTCA+GGG | + | chr5_3:49406005-49406024 | Msa0815720:intron | 15.0% |
| !! | AATTTACATGTAAATATTTC+CGG | + | chr5_3:49406045-49406064 | Msa0815720:CDS | 15.0% |
| !!! | ATAAAACTAGTTTATATAAG+TGG | + | chr5_3:49406260-49406279 | Msa0815720:intron | 15.0% |
| !!! | TAAAACTAGTTTATATAAGT+GGG | + | chr5_3:49406261-49406280 | Msa0815720:intron | 15.0% |
| !! | ATAAAACAAGTATTTATAAG+TGG | + | chr5_3:49406419-49406438 | Msa0815720:intron | 15.0% |
| !! | TAAAACAAGTATTTATAAGT+GGG | + | chr5_3:49406420-49406439 | Msa0815720:intron | 15.0% |
| !!! | GATTTTATAATATCATTCTA+AGG | + | chr5_3:49406787-49406806 | Msa0815720:intron | 15.0% |
| !!! | TTTATTTTATTTTCAGTACT+GGG | + | chr5_3:49407080-49407099 | Msa0815720:intron | 15.0% |
| !!! | TTACAGTAATTTTTTTATCA+AGG | - | chr5_3:49407345-49407364 | None:intergenic | 15.0% |
| !! | TAGATATCATATAATAATGA+TGG | - | chr5_3:49407501-49407520 | None:intergenic | 15.0% |
| !!! | ACTGAATTTATTTTAATATG+TGG | + | chr5_3:49408832-49408851 | Msa0815720:intron | 15.0% |
| !!! | AATTGTAGTAAGAATTTTTT+AGG | - | chr5_3:49409703-49409722 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATTTGAACTTTC+AGG | + | chr5_3:49410048-49410067 | Msa0815720:intron | 15.0% |
| !! | GAACATTAATATACTAAATG+TGG | - | chr5_3:49405886-49405905 | None:intergenic | 20.0% |
| !! | ATTTACATGTAAATATTTCC+GGG | + | chr5_3:49406046-49406065 | Msa0815720:CDS | 20.0% |
| !!! | TATAAGACATCTTTTTTCAT+TGG | + | chr5_3:49406126-49406145 | Msa0815720:intron | 20.0% |
| !! | TTAAATAGATCGTTATAGTA+GGG | + | chr5_3:49406563-49406582 | Msa0815720:intron | 20.0% |
| !! | TACAAAACATTGTCAAATAA+TGG | + | chr5_3:49406649-49406668 | Msa0815720:intron | 20.0% |
| !! | ATTTGAATAAATATTGACAC+CGG | + | chr5_3:49406747-49406766 | Msa0815720:intron | 20.0% |
| !!! | TTATAATATCATTCTAAGGA+AGG | + | chr5_3:49406791-49406810 | Msa0815720:intron | 20.0% |
| !!! | GTTTATTTTATTTTCAGTAC+TGG | + | chr5_3:49407079-49407098 | Msa0815720:intron | 20.0% |
| !!! | TTATAACATAAAAAGTACAC+AGG | - | chr5_3:49407299-49407318 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAAAACTC+AGG | - | chr5_3:49407543-49407562 | None:intergenic | 20.0% |
| !!! | CCTGAGTTTTTTTTTTTTTT+TGG | + | chr5_3:49407540-49407559 | Msa0815720:intron | 20.0% |
| !!! | TTTTGATTTTTCTATCTCAA+TGG | + | chr5_3:49407860-49407879 | Msa0815720:intron | 20.0% |
| !!! | AATAACATGGTTTAATTTGT+AGG | + | chr5_3:49408086-49408105 | Msa0815720:intron | 20.0% |
| !! | ATTTATAAACTTTGAGTATC+TGG | - | chr5_3:49408295-49408314 | None:intergenic | 20.0% |
| !! | AGTTTATAAATATATGCACA+AGG | + | chr5_3:49408304-49408323 | Msa0815720:CDS | 20.0% |
| !! | AATTACTTAATTTAACTCAG+TGG | + | chr5_3:49408734-49408753 | Msa0815720:intron | 20.0% |
| !! | TGAATCAATTTATTGTTAGA+TGG | - | chr5_3:49409022-49409041 | None:intergenic | 20.0% |
| !! | ATGTTACAAGAAAATATATG+TGG | - | chr5_3:49409623-49409642 | None:intergenic | 20.0% |
| !! | AGAGAGTTAAAGTAAATATT+GGG | - | chr5_3:49409650-49409669 | None:intergenic | 20.0% |
| !! | TAGAGAGTTAAAGTAAATAT+TGG | - | chr5_3:49409651-49409670 | None:intergenic | 20.0% |
| !!! | TAAGAATTTTTTAGGTGTAT+GGG | - | chr5_3:49409695-49409714 | None:intergenic | 20.0% |
| !!! | TTAATAGCTTTTTTACTTGA+AGG | + | chr5_3:49410298-49410317 | Msa0815720:CDS | 20.0% |
| !!! | ATATTCCATTGTTGCTATTT+AGG | + | chr5_3:49405945-49405964 | Msa0815720:intron | 25.0% |
| ! | TATTACCTAAATAGCAACAA+TGG | - | chr5_3:49405953-49405972 | None:intergenic | 25.0% |
| !!! | GTAAATTTCTCATTTTTAGC+TGG | - | chr5_3:49406032-49406051 | None:intergenic | 25.0% |
| ! | TTTACATGTAAATATTTCCG+GGG | + | chr5_3:49406047-49406066 | Msa0815720:CDS | 25.0% |
| !!! | TGTGTGTAGAATTGTTTTTT+CGG | + | chr5_3:49406101-49406120 | Msa0815720:intron | 25.0% |
| ! | ATACATATCACTTTCTATGT+GGG | - | chr5_3:49406401-49406420 | None:intergenic | 25.0% |
| ! | TATACATATCACTTTCTATG+TGG | - | chr5_3:49406402-49406421 | None:intergenic | 25.0% |
| ! | TTACTTAGATAGAGATTAGA+AGG | - | chr5_3:49406537-49406556 | None:intergenic | 25.0% |
| ! | GTTAAATAGATCGTTATAGT+AGG | + | chr5_3:49406562-49406581 | Msa0815720:intron | 25.0% |
| ! | ATCGTAGATTGTGAAAAATA+GGG | - | chr5_3:49406716-49406735 | None:intergenic | 25.0% |
| ! | AATCGTAGATTGTGAAAAAT+AGG | - | chr5_3:49406717-49406736 | None:intergenic | 25.0% |
| ! | CTAAGGAAGGAAATTAATAA+TGG | + | chr5_3:49406804-49406823 | Msa0815720:intron | 25.0% |
| ! | GAAAAGGAATTGAAAAGAAA+CGG | + | chr5_3:49406897-49406916 | Msa0815720:intron | 25.0% |
| ! | AACGGAACGAAATAATTATA+AGG | + | chr5_3:49406915-49406934 | Msa0815720:intron | 25.0% |
| !! | ACAAATTGTCAACTTTGAAA+AGG | + | chr5_3:49407011-49407030 | Msa0815720:intron | 25.0% |
| ! | TTCTTCCAGAAAAATGATTA+AGG | + | chr5_3:49407253-49407272 | Msa0815720:intron | 25.0% |
| !!! | AACTACCTTAATCATTTTTC+TGG | - | chr5_3:49407261-49407280 | None:intergenic | 25.0% |
| !! | AATTTTTGTGAGAAGATTAG+TGG | + | chr5_3:49407363-49407382 | Msa0815720:intron | 25.0% |
| !! | ACTGATAAGCTTTTTACTTT+TGG | + | chr5_3:49407396-49407415 | Msa0815720:intron | 25.0% |
| ! | TAATTATCTTTGAATCGTTC+AGG | + | chr5_3:49407632-49407651 | Msa0815720:intron | 25.0% |
| !! | ATGAACATATCATTTTGTGT+TGG | + | chr5_3:49407787-49407806 | Msa0815720:intron | 25.0% |
| !! | AGATTACCTTTATTTGTGAT+TGG | + | chr5_3:49407829-49407848 | Msa0815720:intron | 25.0% |
| ! | ATAGTAGAATACCTTAATCT+TGG | - | chr5_3:49408372-49408391 | None:intergenic | 25.0% |
| ! | ATAGGTTCTTAAATTCACTT+AGG | + | chr5_3:49408499-49408518 | Msa0815720:intron | 25.0% |
| ! | TAGGTTCTTAAATTCACTTA+GGG | + | chr5_3:49408500-49408519 | Msa0815720:intron | 25.0% |
| !!! | ATGATGATAATAATGGATGA+AGG | - | chr5_3:49408896-49408915 | None:intergenic | 25.0% |
| ! | TGACTGAATGATGATAATAA+TGG | - | chr5_3:49408903-49408922 | None:intergenic | 25.0% |
| !! | GAAATTTGTTTGAAACTTGT+GGG | - | chr5_3:49409047-49409066 | None:intergenic | 25.0% |
| !! | TGAAATTTGTTTGAAACTTG+TGG | - | chr5_3:49409048-49409067 | None:intergenic | 25.0% |
| !! | ATCTTTTACAAGTTCTCTAA+CGG | - | chr5_3:49409371-49409390 | None:intergenic | 25.0% |
| !! | ATGTAACAAGAAAGCATAAT+AGG | + | chr5_3:49409422-49409441 | Msa0815720:intron | 25.0% |
| !! | TTTCCTTTTAGATGTGTTAT+AGG | + | chr5_3:49409470-49409489 | Msa0815720:intron | 25.0% |
| !! | TTCCTTTTAGATGTGTTATA+GGG | + | chr5_3:49409471-49409490 | Msa0815720:intron | 25.0% |
| ! | GATATTTCTTTCTGTTAAAG+TGG | + | chr5_3:49409509-49409528 | Msa0815720:intron | 25.0% |
| ! | ACAATTAGCAAAACATGTAT+TGG | - | chr5_3:49409588-49409607 | None:intergenic | 25.0% |
| !! | ATGTTTTGCTAATTGTTAAC+TGG | + | chr5_3:49409592-49409611 | Msa0815720:intron | 25.0% |
| ! | ATTTACTTTAACTCTCTAAG+TGG | + | chr5_3:49409653-49409672 | Msa0815720:intron | 25.0% |
| !!! | GTAAGAATTTTTTAGGTGTA+TGG | - | chr5_3:49409696-49409715 | None:intergenic | 25.0% |
| ! | TTACTACAATTATGTTTGCT+TGG | + | chr5_3:49409712-49409731 | Msa0815720:intron | 25.0% |
| ! | TAATGAACGGGAAAAATAAA+TGG | - | chr5_3:49409989-49410008 | None:intergenic | 25.0% |
| AACTTATGCATTCTGGTAAT+AGG | - | chr5_3:49405848-49405867 | None:intergenic | 30.0% | |
| AATGACTAACTTATGCATTC+TGG | - | chr5_3:49405855-49405874 | None:intergenic | 30.0% | |
| AACCAATTGACAAAACACAT+CGG | - | chr5_3:49406193-49406212 | None:intergenic | 30.0% | |
| TTTGTCAATTGGTTGTGATA+TGG | + | chr5_3:49406199-49406218 | Msa0815720:intron | 30.0% | |
| TAATACCATCTTAGACTTTG+TGG | - | chr5_3:49406336-49406355 | None:intergenic | 30.0% | |
| ! | ACAAAGTCTAAGATGGTATT+AGG | + | chr5_3:49406335-49406354 | Msa0815720:intron | 30.0% |
| TACATATCACTTTCTATGTG+GGG | - | chr5_3:49406400-49406419 | None:intergenic | 30.0% | |
| TAACTCTTAGAATTTGTAGC+TGG | - | chr5_3:49406490-49406509 | None:intergenic | 30.0% | |
| TCGTAGATTGTGAAAAATAG+GGG | - | chr5_3:49406715-49406734 | None:intergenic | 30.0% | |
| AAGATTGCAAATTGTCAACT+AGG | + | chr5_3:49406875-49406894 | Msa0815720:intron | 30.0% | |
| TCACAATGAAAAGATTTCGA+AGG | - | chr5_3:49407179-49407198 | None:intergenic | 30.0% | |
| GCAGGTTTAAATTCGAAAAT+AGG | - | chr5_3:49407210-49407229 | None:intergenic | 30.0% | |
| ! | TAACATAAAAAGTACACAGG+CGG | - | chr5_3:49407296-49407315 | None:intergenic | 30.0% |
| !!! | TTATTTTGGTATTAACGCTC+TGG | - | chr5_3:49407756-49407775 | None:intergenic | 30.0% |
| TATGAGCCAATCACAAATAA+AGG | - | chr5_3:49407838-49407857 | None:intergenic | 30.0% | |
| ! | TTATACACTCTGTCTCTTTT+CGG | - | chr5_3:49407906-49407925 | None:intergenic | 30.0% |
| TATGCATATAATTATGCGTG+AGG | + | chr5_3:49407944-49407963 | Msa0815720:intron | 30.0% | |
| ATGCATATAATTATGCGTGA+GGG | + | chr5_3:49407945-49407964 | Msa0815720:intron | 30.0% | |
| GTAATTAGCAAAATCAGAGA+AGG | + | chr5_3:49408012-49408031 | Msa0815720:intron | 30.0% | |
| TCCTAGTAGACTTAATAACA+TGG | + | chr5_3:49408073-49408092 | Msa0815720:intron | 30.0% | |
| ACCATGTTATTAAGTCTACT+AGG | - | chr5_3:49408077-49408096 | None:intergenic | 30.0% | |
| TATATGACTGCATAGTAGTA+AGG | - | chr5_3:49408340-49408359 | None:intergenic | 30.0% | |
| !! | TGATAATAATGGATGAAGGT+AGG | - | chr5_3:49408892-49408911 | None:intergenic | 30.0% |
| ! | TACCTTAATTGCATGTTTTG+TGG | + | chr5_3:49409105-49409124 | Msa0815720:intron | 30.0% |
| !!! | TGTGCTTTTTTGTTAACTCA+CGG | + | chr5_3:49409169-49409188 | Msa0815720:intron | 30.0% |
| ATTTCTTTCTGTTAAAGTGG+TGG | + | chr5_3:49409512-49409531 | Msa0815720:intron | 30.0% | |
| !!! | ATTTTTTAGGTGTATGGGTA+GGG | - | chr5_3:49409690-49409709 | None:intergenic | 30.0% |
| !!! | AATTTTTTAGGTGTATGGGT+AGG | - | chr5_3:49409691-49409710 | None:intergenic | 30.0% |
| TGCTTGGAAGAGTAAATAAA+TGG | + | chr5_3:49409728-49409747 | Msa0815720:intron | 30.0% | |
| GCTTGGAAGAGTAAATAAAT+GGG | + | chr5_3:49409729-49409748 | Msa0815720:intron | 30.0% | |
| AACTCAGAAATGTAATGAAC+GGG | - | chr5_3:49410001-49410020 | None:intergenic | 30.0% | |
| GAACTCAGAAATGTAATGAA+CGG | - | chr5_3:49410002-49410021 | None:intergenic | 30.0% | |
| ! | TTATTTGAACTTTCAGGTCA+AGG | + | chr5_3:49410054-49410073 | Msa0815720:intron | 30.0% |
| ACTTTCTTTGATCAGAAGAA+AGG | - | chr5_3:49410180-49410199 | None:intergenic | 30.0% | |
| !! | GATATATATCTTTGCTGTTG+CGG | + | chr5_3:49410205-49410224 | Msa0815720:CDS | 30.0% |
| ACCAATTGACAAAACACATC+GGG | - | chr5_3:49406192-49406211 | None:intergenic | 35.0% | |
| ! | ATTAGGTTTCCGCTATGTTT+TGG | + | chr5_3:49406352-49406371 | Msa0815720:intron | 35.0% |
| ! | TTAGGTTTCCGCTATGTTTT+GGG | + | chr5_3:49406353-49406372 | Msa0815720:intron | 35.0% |
| GCATTGTTAGTGTTACATAG+TGG | + | chr5_3:49406677-49406696 | Msa0815720:intron | 35.0% | |
| AAATATTGACACCGGTGAAA+TGG | + | chr5_3:49406755-49406774 | Msa0815720:intron | 35.0% | |
| TAATGGCCGAGAAAATGAAA+CGG | + | chr5_3:49406821-49406840 | Msa0815720:intron | 35.0% | |
| ! | AGAGTTCCGTTTCATTTTCT+CGG | - | chr5_3:49406830-49406849 | None:intergenic | 35.0% |
| GCAAATTGTCAACTAGGAAA+AGG | + | chr5_3:49406881-49406900 | Msa0815720:intron | 35.0% | |
| GGAATTGAGAAGAAATGCTT+CGG | + | chr5_3:49407032-49407051 | Msa0815720:intron | 35.0% | |
| AAAGATTTCGAAGGAGAGAA+AGG | - | chr5_3:49407170-49407189 | None:intergenic | 35.0% | |
| CGAATTTAAACCTGCAAGAA+AGG | + | chr5_3:49407215-49407234 | Msa0815720:intron | 35.0% | |
| ATTAAGAAAGATTCTCCCTC+TGG | + | chr5_3:49407450-49407469 | Msa0815720:intron | 35.0% | |
| ATAGTAATCTGTAGTTTGGC+CGG | - | chr5_3:49407714-49407733 | None:intergenic | 35.0% | |
| GCCAAACTACAGATTACTAT+GGG | + | chr5_3:49407714-49407733 | Msa0815720:intron | 35.0% | |
| ATATAATTATGCGTGAGGGT+TGG | + | chr5_3:49407949-49407968 | Msa0815720:intron | 35.0% | |
| ! | TAATTTGTAGGATGAGCAAG+TGG | + | chr5_3:49408098-49408117 | Msa0815720:intron | 35.0% |
| AAAAAATCCTGAAGCCACTT+TGG | - | chr5_3:49408144-49408163 | None:intergenic | 35.0% | |
| !!! | AAAGTGGCTTCAGGATTTTT+TGG | + | chr5_3:49408143-49408162 | Msa0815720:CDS | 35.0% |
| !!! | AAGTGGCTTCAGGATTTTTT+GGG | + | chr5_3:49408144-49408163 | Msa0815720:CDS | 35.0% |
| TATCAACTGCTCCAAGATTA+AGG | + | chr5_3:49408358-49408377 | Msa0815720:CDS | 35.0% | |
| !! | TTCTGTGCTTTTTGTGACTT+TGG | + | chr5_3:49408467-49408486 | Msa0815720:intron | 35.0% |
| TGACTTTGGTTGCTAACAAT+AGG | + | chr5_3:49408481-49408500 | Msa0815720:intron | 35.0% | |
| AAATTCACTTAGGGTCTGTT+TGG | + | chr5_3:49408509-49408528 | Msa0815720:intron | 35.0% | |
| TGTTAGATGGATGAAATGCA+AGG | - | chr5_3:49409009-49409028 | None:intergenic | 35.0% | |
| AGCCACAAAACATGCAATTA+AGG | - | chr5_3:49409110-49409129 | None:intergenic | 35.0% | |
| CAGTTGAATACAAAGATCCA+TGG | - | chr5_3:49409143-49409162 | None:intergenic | 35.0% | |
| CATGGATCTTTGTATTCAAC+TGG | + | chr5_3:49409141-49409160 | Msa0815720:intron | 35.0% | |
| TTAACTCACGGTCAATTTCA+AGG | + | chr5_3:49409181-49409200 | Msa0815720:intron | 35.0% | |
| TAACTCACGGTCAATTTCAA+GGG | + | chr5_3:49409182-49409201 | Msa0815720:intron | 35.0% | |
| ! | GTCTAGCTCATTTCTTACTT+TGG | + | chr5_3:49409225-49409244 | Msa0815720:intron | 35.0% |
| ACTGCAAATACGTACGAATT+TGG | + | chr5_3:49409253-49409272 | Msa0815720:intron | 35.0% | |
| AACAAGCAAGAGAGAAAAAG+AGG | - | chr5_3:49409330-49409349 | None:intergenic | 35.0% | |
| CACCCTATAACACATCTAAA+AGG | - | chr5_3:49409476-49409495 | None:intergenic | 35.0% | |
| AGCAATACAAATGCAACAAC+CGG | + | chr5_3:49409816-49409835 | Msa0815720:intron | 35.0% | |
| CTGAAGATTCAATTCCTACT+CGG | + | chr5_3:49410092-49410111 | Msa0815720:CDS | 35.0% | |
| TGAAGATTCAATTCCTACTC+GGG | + | chr5_3:49410093-49410112 | Msa0815720:CDS | 35.0% | |
| AAATATTTCCGGGGTTGTGA+TGG | + | chr5_3:49406056-49406075 | Msa0815720:CDS | 40.0% | |
| TGACAAAACACATCGGGTTT+CGG | - | chr5_3:49406186-49406205 | None:intergenic | 40.0% | |
| ! | ACCCGATGTGTTTTGTCAAT+TGG | + | chr5_3:49406188-49406207 | Msa0815720:intron | 40.0% |
| CCATCTTAGACTTTGTGGTT+GGG | - | chr5_3:49406331-49406350 | None:intergenic | 40.0% | |
| ACCATCTTAGACTTTGTGGT+TGG | - | chr5_3:49406332-49406351 | None:intergenic | 40.0% | |
| CCTAATACAACCCTGCAAAT+CGG | - | chr5_3:49406466-49406485 | None:intergenic | 40.0% | |
| TCCAAAAAGAGCCATTTCAC+CGG | - | chr5_3:49406769-49406788 | None:intergenic | 40.0% | |
| CAAAGTAATCATGACCGTGA+AGG | + | chr5_3:49406941-49406960 | Msa0815720:intron | 40.0% | |
| ! | AGTTTTCCGTTTCACCTTCA+CGG | - | chr5_3:49406958-49406977 | None:intergenic | 40.0% |
| TCATTCATGCTCAGTAAGTG+AGG | + | chr5_3:49407112-49407131 | Msa0815720:intron | 40.0% | |
| TTCAGAACAGCCTCTTTCTA+GGG | + | chr5_3:49407140-49407159 | Msa0815720:intron | 40.0% | |
| GAAAGGTTAACCCTAGAAAG+AGG | - | chr5_3:49407153-49407172 | None:intergenic | 40.0% | |
| ACTTCTCAGTTTATGCCAGA+GGG | - | chr5_3:49407468-49407487 | None:intergenic | 40.0% | |
| AACTTCTCAGTTTATGCCAG+AGG | - | chr5_3:49407469-49407488 | None:intergenic | 40.0% | |
| AATCCAAGTTCGATTCCTGA+TGG | + | chr5_3:49407657-49407676 | Msa0815720:intron | 40.0% | |
| ATCCAAGTTCGATTCCTGAT+GGG | + | chr5_3:49407658-49407677 | Msa0815720:intron | 40.0% | |
| TAGTAATCTGTAGTTTGGCC+GGG | - | chr5_3:49407713-49407732 | None:intergenic | 40.0% | |
| GGCCAAACTACAGATTACTA+TGG | + | chr5_3:49407713-49407732 | Msa0815720:intron | 40.0% | |
| GCCCATAGTAATCTGTAGTT+TGG | - | chr5_3:49407718-49407737 | None:intergenic | 40.0% | |
| ! | TATTAACGCTCTGGTTCCTA+GGG | - | chr5_3:49407747-49407766 | None:intergenic | 40.0% |
| !!! | AGTGGCTTCAGGATTTTTTG+GGG | + | chr5_3:49408145-49408164 | Msa0815720:CDS | 40.0% |
| GTTCTGCTCATTTAGATCGA+AGG | + | chr5_3:49408187-49408206 | Msa0815720:CDS | 40.0% | |
| ATTGCAAAGAATCTGCTTGC+CGG | + | chr5_3:49408235-49408254 | Msa0815720:CDS | 40.0% | |
| CCTGATGATAGACCATATAC+CGG | - | chr5_3:49408257-49408276 | None:intergenic | 40.0% | |
| GTTGAACGAGATCTAAGAGA+AGG | - | chr5_3:49408938-49408957 | None:intergenic | 40.0% | |
| ATTGTATGGAGTGATGTTGC+AGG | - | chr5_3:49408960-49408979 | None:intergenic | 40.0% | |
| ! | TGTGGCTTGTAAAATCTCCA+TGG | + | chr5_3:49409123-49409142 | Msa0815720:intron | 40.0% |
| GTCAATTTCAAGGGCAAATG+TGG | + | chr5_3:49409191-49409210 | Msa0815720:intron | 40.0% | |
| AGAGAGAGAGATTTCTCGTT+TGG | - | chr5_3:49409296-49409315 | None:intergenic | 40.0% | |
| ! | AAGTTCTCTAACGGCTTGTT+TGG | - | chr5_3:49409362-49409381 | None:intergenic | 40.0% |
| CTTTCTGTTAAAGTGGTGGT+AGG | + | chr5_3:49409516-49409535 | Msa0815720:intron | 40.0% | |
| TTGTATTGCTGCGATCAAAG+AGG | - | chr5_3:49409806-49409825 | None:intergenic | 40.0% | |
| AATACAAATGCAACAACCGG+CGG | + | chr5_3:49409819-49409838 | Msa0815720:CDS | 40.0% | |
| TTGGATGACACATCATCATG+CGG | + | chr5_3:49409875-49409894 | Msa0815720:CDS | 40.0% | |
| TTTGGCAGCAGAAACTCAAA+TGG | + | chr5_3:49409899-49409918 | Msa0815720:CDS | 40.0% | |
| AAACTTCTGAGCCTCAGAAA+AGG | + | chr5_3:49410127-49410146 | Msa0815720:CDS | 40.0% | |
| ! | CCTTTTCGTTTCCTTTTCTG+AGG | - | chr5_3:49410141-49410160 | None:intergenic | 40.0% |
| CCTCAGAAAAGGAAACGAAA+AGG | + | chr5_3:49410138-49410157 | Msa0815720:CDS | 40.0% | |
| TTGAAGGAGTTTGCGTTAGT+TGG | + | chr5_3:49410314-49410333 | Msa0815720:CDS | 40.0% | |
| TGAAGGAGTTTGCGTTAGTT+GGG | + | chr5_3:49410315-49410334 | Msa0815720:CDS | 40.0% | |
| ATCTCTAACCATCACAACCC+CGG | - | chr5_3:49406067-49406086 | None:intergenic | 45.0% | |
| !! | ACCTCACAAACCGGTTTTGT+GGG | + | chr5_3:49406294-49406313 | Msa0815720:intron | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | - | chr5_3:49406307-49406326 | None:intergenic | 45.0% | |
| CCCAACCACAAAGTCTAAGA+TGG | + | chr5_3:49406328-49406347 | Msa0815720:intron | 45.0% | |
| TCTGCATGCCCAAAACATAG+CGG | - | chr5_3:49406364-49406383 | None:intergenic | 45.0% | |
| !! | CTATGTTTTGGGCATGCAGA+GGG | + | chr5_3:49406364-49406383 | Msa0815720:intron | 45.0% |
| !! | TATGTTTTGGGCATGCAGAG+GGG | + | chr5_3:49406365-49406384 | Msa0815720:intron | 45.0% |
| ! | CCGATTTGCAGGGTTGTATT+AGG | + | chr5_3:49406463-49406482 | Msa0815720:intron | 45.0% |
| ! | ACCGGTGAAATGGCTCTTTT+TGG | + | chr5_3:49406765-49406784 | Msa0815720:intron | 45.0% |
| TCATGACCGTGAAGGTGAAA+CGG | + | chr5_3:49406949-49406968 | Msa0815720:intron | 45.0% | |
| CATGCTCAGTAAGTGAGGTT+CGG | + | chr5_3:49407117-49407136 | Msa0815720:intron | 45.0% | |
| GTTCAGAACAGCCTCTTTCT+AGG | + | chr5_3:49407139-49407158 | Msa0815720:intron | 45.0% | |
| GCTCATTGTTCCTTTCTTGC+AGG | - | chr5_3:49407228-49407247 | None:intergenic | 45.0% | |
| TTCCCATCAGGAATCGAACT+TGG | - | chr5_3:49407663-49407682 | None:intergenic | 45.0% | |
| TTCCTGATGGGAACAGTTCT+TGG | + | chr5_3:49407670-49407689 | Msa0815720:intron | 45.0% | |
| ATCCAAGAACTGTTCCCATC+AGG | - | chr5_3:49407675-49407694 | None:intergenic | 45.0% | |
| GATGGGAACAGTTCTTGGAT+AGG | + | chr5_3:49407675-49407694 | Msa0815720:intron | 45.0% | |
| GATAGGCTTTACTTACCTCC+CGG | + | chr5_3:49407692-49407711 | Msa0815720:intron | 45.0% | |
| ! | ATTAACGCTCTGGTTCCTAG+GGG | - | chr5_3:49407746-49407765 | None:intergenic | 45.0% |
| ! | GTATTAACGCTCTGGTTCCT+AGG | - | chr5_3:49407748-49407767 | None:intergenic | 45.0% |
| AGAATCTGCTTGCCGGTATA+TGG | + | chr5_3:49408242-49408261 | Msa0815720:CDS | 45.0% | |
| CCGGTATATGGTCTATCATC+AGG | + | chr5_3:49408254-49408273 | Msa0815720:intron | 45.0% | |
| ATGGACATTCAGTGCAGCAT+TGG | + | chr5_3:49409558-49409577 | Msa0815720:intron | 45.0% | |
| ATACAAATGCAACAACCGGC+GGG | + | chr5_3:49409820-49409839 | Msa0815720:CDS | 45.0% | |
| AGTCATCACCTTGCAAGCAA+TGG | - | chr5_3:49409948-49409967 | None:intergenic | 45.0% | |
| ATTCCTACTCGGGAATCACA+AGG | + | chr5_3:49410103-49410122 | Msa0815720:CDS | 45.0% | |
| TTCCTACTCGGGAATCACAA+GGG | + | chr5_3:49410104-49410123 | Msa0815720:CDS | 45.0% | |
| !! | TTTGCTGTTGCGGAAGTTGT+AGG | + | chr5_3:49410215-49410234 | Msa0815720:CDS | 45.0% |
| ! | TTGCTGTTGCGGAAGTTGTA+GGG | + | chr5_3:49410216-49410235 | Msa0815720:CDS | 45.0% |
| GAAGGAGTTTGCGTTAGTTG+GGG | + | chr5_3:49410316-49410335 | Msa0815720:CDS | 45.0% | |
| AAGGAGTTTGCGTTAGTTGG+GGG | + | chr5_3:49410317-49410336 | Msa0815720:CDS | 45.0% | |
| GTAGTCGTCACCTCACAAAC+CGG | + | chr5_3:49406285-49406304 | Msa0815720:intron | 50.0% | |
| !! | CACCTCACAAACCGGTTTTG+TGG | + | chr5_3:49406293-49406312 | Msa0815720:intron | 50.0% |
| !! | CCTCACAAACCGGTTTTGTG+GGG | + | chr5_3:49406295-49406314 | Msa0815720:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr5_3:49406305-49406324 | Msa0815720:intron | 50.0% |
| !! | GCTATGTTTTGGGCATGCAG+AGG | + | chr5_3:49406363-49406382 | Msa0815720:intron | 50.0% |
| TAATCTGTAGTTTGGCCGGG+AGG | - | chr5_3:49407710-49407729 | None:intergenic | 50.0% | |
| TGGCTGGTGAACTTCACGTT+GGG | - | chr5_3:49408124-49408143 | None:intergenic | 50.0% | |
| TTGGCTGGTGAACTTCACGT+TGG | - | chr5_3:49408125-49408144 | None:intergenic | 50.0% | |
| GTGAAGTTCACCAGCCAAAG+TGG | + | chr5_3:49408127-49408146 | Msa0815720:CDS | 50.0% | |
| ! | AATCCTGAAGCCACTTTGGC+TGG | - | chr5_3:49408140-49408159 | None:intergenic | 50.0% |
| CCAATGCTGATCCACATCGT+GGG | - | chr5_3:49409859-49409878 | None:intergenic | 50.0% | |
| TCCAATGCTGATCCACATCG+TGG | - | chr5_3:49409860-49409879 | None:intergenic | 50.0% | |
| GACACATCATCATGCGGCTT+TGG | + | chr5_3:49409881-49409900 | Msa0815720:CDS | 50.0% | |
| GTACTGCTCCATTGCTTGCA+AGG | + | chr5_3:49409937-49409956 | Msa0815720:CDS | 50.0% | |
| TTCCCTTGTGATTCCCGAGT+AGG | - | chr5_3:49410109-49410128 | None:intergenic | 50.0% | |
| CAGAAGAAAGGAGCTCTGTG+TGG | - | chr5_3:49410168-49410187 | None:intergenic | 50.0% | |
| AGTTTGCGTTAGTTGGGGGT+TGG | + | chr5_3:49410321-49410340 | Msa0815720:CDS | 50.0% | |
| !! | CCCCACAAAACCGGTTTGTG+AGG | - | chr5_3:49406298-49406317 | None:intergenic | 55.0% |
| !! | TGCAAATCGGCTTGTGAGGC+GGG | - | chr5_3:49406453-49406472 | None:intergenic | 55.0% |
| !! | CTGCAAATCGGCTTGTGAGG+CGG | - | chr5_3:49406454-49406473 | None:intergenic | 55.0% |
| !! | GCCTCACAAGCCGATTTGCA+GGG | + | chr5_3:49406453-49406472 | Msa0815720:intron | 55.0% |
| !! | ACCCTGCAAATCGGCTTGTG+AGG | - | chr5_3:49406457-49406476 | None:intergenic | 55.0% |
| TACTATGGGCCCTTTCCCCT+AGG | + | chr5_3:49407728-49407747 | Msa0815720:intron | 55.0% | |
| ! | GCTCTGGTTCCTAGGGGAAA+GGG | - | chr5_3:49407740-49407759 | None:intergenic | 55.0% |
| TCACCAGCCAAAGTGGCTTC+AGG | + | chr5_3:49408134-49408153 | Msa0815720:CDS | 55.0% | |
| CCCACGATGTGGATCAGCAT+TGG | + | chr5_3:49409856-49409875 | Msa0815720:CDS | 55.0% | |
| !! | GCAAATCGGCTTGTGAGGCG+GGG | - | chr5_3:49406452-49406471 | None:intergenic | 60.0% |
| !! | CGCCTCACAAGCCGATTTGC+AGG | + | chr5_3:49406452-49406471 | Msa0815720:intron | 60.0% |
| ! | CGCTCTGGTTCCTAGGGGAA+AGG | - | chr5_3:49407741-49407760 | None:intergenic | 60.0% |
| CTGCATCGTCTCCCACGATG+TGG | + | chr5_3:49409845-49409864 | Msa0815720:CDS | 60.0% | |
| GGAGACGATGCAGAACCCGC+CGG | - | chr5_3:49409838-49409857 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49405783 | 49410348 | 49405783 | ID=Msa0815720;Name=Msa0815720 |
| chr5_3 | mRNA | 49405783 | 49410348 | 49405783 | ID=Msa0815720-mRNA-1;Parent=Msa0815720;Name=Msa0815720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.16|0|0.57|0.33|0.42|7|0|241 |
| chr5_3 | exon | 49405783 | 49405790 | 49405783 | ID=Msa0815720-mRNA-1:exon:14855;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49406026 | 49406077 | 49406026 | ID=Msa0815720-mRNA-1:exon:14856;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49407096 | 49407101 | 49407096 | ID=Msa0815720-mRNA-1:exon:14857;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49408108 | 49408263 | 49408108 | ID=Msa0815720-mRNA-1:exon:14858;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49408296 | 49408379 | 49408296 | ID=Msa0815720-mRNA-1:exon:14859;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49409818 | 49409958 | 49409818 | ID=Msa0815720-mRNA-1:exon:14860;Parent=Msa0815720-mRNA-1 |
| chr5_3 | exon | 49410070 | 49410348 | 49410070 | ID=Msa0815720-mRNA-1:exon:14861;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49405783 | 49405790 | 49405783 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49406026 | 49406077 | 49406026 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49407096 | 49407101 | 49407096 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49408108 | 49408263 | 49408108 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49408296 | 49408379 | 49408296 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49409818 | 49409958 | 49409818 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| chr5_3 | CDS | 49410070 | 49410348 | 49410070 | ID=Msa0815720-mRNA-1:cds;Parent=Msa0815720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
