AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815900 MtrunA17_Chr5g0434571 94.172 326 13 2 1 326 37 356 0.0 563
Msa0815900 MtrunA17_Chr3g0110351 64.688 337 82 9 1 326 1 311 9.61e-127 365
Msa0815900 MtrunA17_Chr4g0057031 78.808 151 31 1 1 150 1 151 2.07e-83 253
Msa0815900 MtrunA17_Chr7g0228891 79.845 129 26 0 1 129 1 129 7.30e-75 231
Msa0815900 MtrunA17_Chr6g0453471 58.989 178 68 2 1 176 1 175 2.64e-66 212
Msa0815900 MtrunA17_Chr4g0039971 72.656 128 35 0 1 128 2 129 2.99e-66 212
Msa0815900 MtrunA17_Chr8g0349261 72.593 135 35 2 1 133 1 135 4.63e-66 209
Msa0815900 MtrunA17_Chr7g0217741 71.094 128 37 0 1 128 1 128 6.07e-65 207
Msa0815900 MtrunA17_Chr3g0115821 70.312 128 38 0 1 128 1 128 1.03e-64 207
Msa0815900 MtrunA17_Chr4g0042671 72.656 128 35 0 1 128 1 128 1.22e-64 209
Msa0815900 MtrunA17_Chr5g0410961 69.531 128 39 0 1 128 1 128 1.18e-63 205
Msa0815900 MtrunA17_Chr4g0037141 55.556 171 64 2 1 170 1 160 8.90e-63 201
Msa0815900 MtrunA17_Chr1g0193371 67.692 130 42 0 1 130 1 130 3.24e-62 202
Msa0815900 MtrunA17_Chr2g0281071 69.767 129 38 1 1 128 1 129 2.35e-61 199
Msa0815900 MtrunA17_Chr2g0323411 70.312 128 38 0 1 128 1 128 2.65e-61 198
Msa0815900 MtrunA17_Chr4g0048511 68.992 129 39 1 1 128 1 129 7.96e-61 198
Msa0815900 MtrunA17_Chr3g0131121 64.444 135 48 0 1 135 1 135 2.01e-60 195
Msa0815900 MtrunA17_Chr8g0385321 65.116 129 45 0 1 129 1 129 1.51e-59 193
Msa0815900 MtrunA17_Chr5g0395281 64.844 128 45 0 1 128 1 128 9.64e-59 191
Msa0815900 MtrunA17_Chr3g0117091 65.891 129 44 0 1 129 1 129 1.20e-58 192
Msa0815900 MtrunA17_Chr5g0435101 64.000 125 45 0 3 127 2 126 1.29e-58 187
Msa0815900 MtrunA17_Chr1g0211161 55.758 165 72 1 3 167 4 167 1.83e-58 188
Msa0815900 MtrunA17_Chr7g0270891 66.154 130 44 0 1 130 1 130 2.17e-58 192
Msa0815900 MtrunA17_Chr4g0058631 66.154 130 44 0 1 130 1 130 2.97e-58 191
Msa0815900 MtrunA17_Chr3g0103281 59.864 147 59 0 1 147 1 147 4.07e-58 190
Msa0815900 MtrunA17_Chr7g0271241 66.912 136 45 0 1 136 1 136 1.07e-57 191
Msa0815900 MtrunA17_Chr1g0193801 64.615 130 46 0 1 130 1 130 1.48e-57 190
Msa0815900 MtrunA17_Chr3g0121241 55.000 160 70 1 5 162 35 194 5.39e-57 186
Msa0815900 MtrunA17_Chr7g0261281 70.690 116 34 0 1 116 1 116 9.99e-57 185
Msa0815900 MtrunA17_Chr1g0187761 37.716 289 134 6 1 283 1 249 1.65e-54 179
Msa0815900 MtrunA17_Chr6g0452271 50.000 184 86 2 1 179 1 183 1.92e-54 181
Msa0815900 MtrunA17_Chr2g0309911 61.654 133 50 1 1 133 1 132 3.60e-54 179
Msa0815900 MtrunA17_Chr1g0194951 41.667 252 133 4 1 249 1 241 5.91e-54 181
Msa0815900 MtrunA17_Chr7g0274581 54.362 149 65 2 1 146 1 149 6.36e-54 175
Msa0815900 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 1.09e-53 179
Msa0815900 MtrunA17_Chr4g0044421 64.800 125 43 1 3 126 2 126 2.50e-53 173
Msa0815900 MtrunA17_Chr7g0275911 64.103 117 42 0 1 117 1 117 3.95e-53 175
Msa0815900 MtrunA17_Chr3g0092401 63.866 119 43 0 1 119 2 120 8.63e-53 176
Msa0815900 MtrunA17_Chr7g0217221 56.291 151 66 0 1 151 1 151 1.13e-52 174
Msa0815900 MtrunA17_Chr1g0203411 61.864 118 45 0 1 118 1 118 1.24e-52 175
Msa0815900 MtrunA17_Chr4g0060721 62.712 118 44 0 1 118 2 119 2.09e-52 176
Msa0815900 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 3.91e-52 174
Msa0815900 MtrunA17_Chr8g0342521 62.602 123 46 0 1 123 1 123 4.46e-52 175
Msa0815900 MtrunA17_Chr1g0167691 37.193 285 138 5 1 283 1 246 5.16e-52 172
Msa0815900 MtrunA17_Chr2g0330041 61.600 125 48 0 1 125 1 125 1.01e-51 176
Msa0815900 MtrunA17_Chr1g0167661 66.379 116 39 0 1 116 1 116 1.02e-51 171
Msa0815900 MtrunA17_Chr7g0254411 58.824 136 54 1 1 134 1 136 3.93e-51 172
Msa0815900 MtrunA17_Chr8g0342541 61.789 123 47 0 1 123 1 123 6.38e-51 172
Msa0815900 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 1.76e-50 170
Msa0815900 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 3.94e-50 170
Msa0815900 MtrunA17_Chr8g0342481 64.103 117 41 1 1 116 1 117 4.58e-50 171
Msa0815900 MtrunA17_Chr4g0070611 63.025 119 44 0 1 119 1 119 1.57e-49 167
Msa0815900 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 4.37e-49 167
Msa0815900 MtrunA17_Chr4g0022901 62.069 116 43 1 1 115 1 116 4.52e-49 165
Msa0815900 MtrunA17_Chr4g0022911 60.345 116 45 1 1 115 1 116 6.66e-49 165
Msa0815900 MtrunA17_Chr4g0070641 63.025 119 44 0 1 119 1 119 7.34e-49 161
Msa0815900 MtrunA17_Chr2g0323351 63.559 118 43 0 1 118 1 118 7.52e-49 164
Msa0815900 MtrunA17_Chr4g0022931 60.169 118 46 1 1 117 1 118 9.45e-49 164
Msa0815900 MtrunA17_Chr5g0417821 62.185 119 45 0 10 128 5 123 2.00e-48 164
Msa0815900 MtrunA17_Chr1g0151941 39.407 236 123 6 1 220 1 232 3.80e-48 162
Msa0815900 MtrunA17_Chr4g0032401 57.895 133 49 1 12 144 17 142 7.95e-48 163
Msa0815900 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 2.56e-47 162
Msa0815900 MtrunA17_Chr5g0397231 61.818 110 42 0 1 110 1 110 2.97e-47 162
Msa0815900 MtrunA17_Chr2g0328771 64.815 108 38 0 12 119 20 127 8.73e-47 160
Msa0815900 MtrunA17_Chr7g0247131 76.136 88 21 0 43 130 9 96 5.38e-45 154
Msa0815900 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 5.45e-45 155
Msa0815900 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 1.43e-44 155
Msa0815900 MtrunA17_Chr6g0470971 52.113 142 65 2 1 140 1 141 1.52e-44 154
Msa0815900 MtrunA17_Chr3g0088461 61.818 110 42 0 8 117 18 127 1.91e-44 155
Msa0815900 MtrunA17_Chr7g0264641 57.500 120 50 1 1 119 1 120 2.02e-44 153
Msa0815900 MtrunA17_Chr4g0028311 56.667 120 51 1 1 119 1 120 3.12e-44 154
Msa0815900 MtrunA17_Chr1g0168661 63.810 105 38 0 13 117 22 126 7.82e-44 151
Msa0815900 MtrunA17_Chr4g0022881 57.895 114 48 0 1 114 1 114 9.62e-44 150
Msa0815900 MtrunA17_Chr1g0203441 54.135 133 59 2 1 132 1 132 1.23e-43 151
Msa0815900 MtrunA17_Chr4g0022891 58.407 113 47 0 1 113 1 113 2.67e-43 149
Msa0815900 MtrunA17_Chr7g0228231 60.748 107 42 0 12 118 14 120 3.01e-43 148
Msa0815900 MtrunA17_Chr8g0354661 60.185 108 43 0 10 117 35 142 6.66e-43 155
Msa0815900 MtrunA17_Chr1g0186061 61.905 105 40 0 13 117 21 125 9.58e-43 148
Msa0815900 MtrunA17_Chr6g0450101 55.372 121 52 1 1 119 1 121 1.04e-42 146
Msa0815900 MtrunA17_Chr3g0135311 57.265 117 49 1 1 116 1 117 1.57e-42 150
Msa0815900 MtrunA17_Chr1g0194291 54.237 118 54 0 8 125 17 134 2.17e-42 147
Msa0815900 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 2.32e-42 149
Msa0815900 MtrunA17_Chr1g0209661 53.448 116 54 0 12 127 27 142 5.76e-42 147
Msa0815900 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 1.68e-41 147
Msa0815900 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 3.80e-41 145
Msa0815900 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 4.07e-41 150
Msa0815900 MtrunA17_Chr1g0194301 50.833 120 59 0 8 127 29 148 4.44e-41 144
Msa0815900 MtrunA17_Chr2g0327821 51.163 129 61 1 12 138 6 134 2.77e-40 141
Msa0815900 MtrunA17_Chr3g0080861 55.556 108 48 0 10 117 35 142 7.21e-40 146
Msa0815900 MtrunA17_Chr6g0487491 52.419 124 50 2 1 115 1 124 3.79e-39 139
Msa0815900 MtrunA17_Chr4g0055981 56.140 114 50 0 12 125 55 168 2.38e-38 136
Msa0815900 MtrunA17_Chr1g0180391 52.632 114 54 0 4 117 11 124 3.40e-38 135
Msa0815900 MtrunA17_Chr2g0293911 51.667 120 58 0 8 127 20 139 3.68e-38 138
Msa0815900 MtrunA17_Chr4g0068921 52.542 118 56 0 8 125 20 137 5.49e-38 134
Msa0815900 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 8.22e-38 130
Msa0815900 MtrunA17_Chr1g0154031 45.122 164 81 3 12 172 76 233 8.55e-38 139
Msa0815900 MtrunA17_Chr2g0294811 67.045 88 29 0 1 88 1 88 1.30e-37 130
Msa0815900 MtrunA17_Chr4g0030881 55.455 110 42 1 13 115 8 117 1.77e-37 134
Msa0815900 MtrunA17_Chr8g0343831 57.944 107 45 0 12 118 8 114 2.52e-37 134
Msa0815900 MtrunA17_Chr2g0322521 57.798 109 46 0 9 117 26 134 6.39e-37 136
Msa0815900 MtrunA17_Chr7g0240821 35.714 224 126 4 16 238 5 211 1.13e-35 129
Msa0815900 MtrunA17_Chr5g0434931 54.717 106 48 0 11 116 34 139 7.19e-34 125
Msa0815900 MtrunA17_Chr8g0342461 61.111 90 34 1 1 89 1 90 8.32e-34 121
Msa0815900 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 8.36e-34 119
Msa0815900 MtrunA17_Chr5g0434911 52.727 110 52 0 7 116 16 125 1.03e-33 125
Msa0815900 MtrunA17_Chr8g0342471 61.111 90 34 1 1 89 1 90 1.75e-33 120
Msa0815900 MtrunA17_Chr5g0440781 44.286 140 74 3 13 149 13 151 1.92e-33 122
Msa0815900 MtrunA17_Chr8g0342531 59.551 89 36 0 1 89 1 89 3.87e-33 120
Msa0815900 MtrunA17_Chr7g0220341 54.128 109 48 1 10 116 23 131 5.86e-33 123
Msa0815900 MtrunA17_Chr5g0440761 44.286 140 74 3 13 149 13 151 7.96e-33 122
Msa0815900 MtrunA17_Chr5g0441141 44.286 140 74 3 13 149 13 151 9.68e-33 122
Msa0815900 MtrunA17_Chr5g0434831 54.717 106 48 0 11 116 6 111 2.83e-32 119
Msa0815900 MtrunA17_Chr7g0228991 53.774 106 49 0 11 116 28 133 1.77e-31 119
Msa0815900 MtrunA17_Chr1g0192411 49.091 110 56 0 8 117 8 117 2.82e-31 121
Msa0815900 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 6.32e-31 117
Msa0815900 MtrunA17_Chr5g0395221 59.524 84 34 0 5 88 5 88 1.13e-30 111
Msa0815900 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 1.50e-30 117
Msa0815900 MtrunA17_Chr3g0099141 55.172 87 39 0 8 94 36 122 1.74e-30 112
Msa0815900 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 2.31e-30 111
Msa0815900 MtrunA17_Chr5g0429661 51.429 105 48 2 12 115 120 222 1.01e-28 113
Msa0815900 MtrunA17_Chr3g0093811 54.545 88 40 0 43 130 13 100 1.87e-28 110
Msa0815900 MtrunA17_Chr8g0334881 48.148 108 55 1 8 114 6 113 2.52e-28 111
Msa0815900 MtrunA17_Chr5g0441131 48.696 115 57 2 10 123 7 120 2.64e-28 108
Msa0815900 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 3.01e-28 111
Msa0815900 MtrunA17_Chr3g0133601 47.222 108 54 2 14 120 37 142 2.08e-26 104
Msa0815900 MtrunA17_Chr3g0117511 44.144 111 59 2 9 118 178 286 9.34e-26 106
Msa0815900 MtrunA17_Chr6g0454921 39.286 140 77 3 14 152 15 147 2.74e-25 100
Msa0815900 MtrunA17_Chr4g0058991 45.045 111 58 2 9 118 204 312 3.14e-25 105
Msa0815900 MtrunA17_Chr5g0401731 43.333 120 65 2 14 132 15 132 5.11e-25 102
Msa0815900 MtrunA17_Chr4g0053431 47.170 106 47 2 14 115 5 105 6.14e-25 101
Msa0815900 MtrunA17_Chr6g0480581 39.456 147 80 4 14 155 4 146 1.34e-24 100
Msa0815900 MtrunA17_Chr7g0238631 49.057 106 51 2 12 116 111 214 1.52e-24 103
Msa0815900 MtrunA17_Chr4g0008551 45.631 103 53 2 14 115 38 138 2.83e-24 101
Msa0815900 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 8.68e-23 99.4
Msa0815900 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 1.16e-22 91.7
Msa0815900 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 4.07e-22 92.4
Msa0815900 MtrunA17_Chr7g0229131 50.588 85 41 1 43 127 3 86 7.78e-22 90.5
Msa0815900 MtrunA17_Chr7g0228531 37.013 154 89 3 14 167 220 365 1.18e-21 94.7
Msa0815900 MtrunA17_Chr1g0157731 44.340 106 56 2 12 116 89 192 2.22e-21 95.1
Msa0815900 MtrunA17_Chr5g0437321 43.396 106 54 3 8 112 16 116 5.69e-21 90.9
Msa0815900 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 5.71e-21 85.9
Msa0815900 MtrunA17_Chr6g0460661 44.898 98 51 2 14 110 16 111 7.09e-21 87.8
Msa0815900 MtrunA17_Chr7g0233061 43.925 107 50 4 14 117 180 279 2.85e-20 90.1
Msa0815900 MtrunA17_Chr5g0434901 56.061 66 29 0 48 113 9 74 3.01e-20 84.7
Msa0815900 MtrunA17_Chr5g0417621 41.509 106 59 2 14 118 134 237 1.26e-19 89.0
Msa0815900 MtrunA17_Chr4g0042501 41.509 106 59 2 14 118 105 208 1.41e-19 89.0
Msa0815900 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 2.70e-18 85.5
Msa0815900 MtrunA17_Chr1g0177901 39.370 127 67 4 25 143 5 129 4.53e-18 81.3
Msa0815900 MtrunA17_Chr7g0228481 40.909 110 60 3 14 120 220 327 1.92e-17 82.8
Msa0815900 MtrunA17_Chr7g0228401 34.711 121 48 2 17 110 258 374 2.07e-17 82.8
Msa0815900 MtrunA17_Chr6g0460671 39.252 107 62 2 14 119 99 203 2.61e-17 81.6
Msa0815900 MtrunA17_Chr5g0395231 64.706 51 18 0 78 128 5 55 5.22e-17 79.3
Msa0815900 MtrunA17_Chr3g0125801 41.509 106 59 2 14 118 16 119 8.07e-17 79.3
Msa0815900 MtrunA17_Chr7g0254261 37.121 132 76 3 9 135 80 209 8.39e-17 80.1
Msa0815900 MtrunA17_Chr7g0238651 40.594 101 58 1 17 115 10 110 3.01e-16 78.6
Msa0815900 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 4.86e-16 71.6
Msa0815900 MtrunA17_Chr4g0042621 75.000 40 10 0 89 128 15 54 3.08e-14 72.4
Msa0815900 MtrunA17_Chr5g0416341 37.624 101 62 1 17 117 29 128 7.09e-13 68.9
Msa0815900 MtrunA17_Chr3g0145551 65.909 44 15 0 92 135 2 45 7.75e-13 63.5
Msa0815900 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 5.93e-12 61.6
Msa0815900 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 5.93e-12 61.6
Msa0815900 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 5.93e-12 61.6
Msa0815900 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 5.93e-12 61.6
Msa0815900 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 6.79e-12 60.5
Msa0815900 MtrunA17_Chr8g0362231 33.913 115 72 3 17 130 25 136 3.24e-11 63.9
Msa0815900 MtrunA17_Chr3g0104491 40.299 67 36 1 53 115 1 67 3.43e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815900 AT5G16600.1 46.739 368 113 6 1 326 1 327 2.06e-101 301
Msa0815900 AT1G66230.1 57.000 300 94 5 1 291 1 274 3.94e-101 299
Msa0815900 AT4G22680.1 86.822 129 17 0 1 129 1 129 3.73e-81 247
Msa0815900 AT4G12350.1 86.047 129 18 0 1 129 1 129 1.84e-80 246
Msa0815900 AT5G14340.1 70.213 141 41 1 1 140 13 153 5.28e-71 222
Msa0815900 AT5G62320.1 72.932 133 29 1 2 127 3 135 9.61e-69 215
Msa0815900 AT3G61250.1 65.517 145 50 0 1 145 1 145 6.95e-67 212
Msa0815900 AT3G02940.2 71.875 128 36 0 1 128 1 128 8.49e-66 209
Msa0815900 AT3G02940.1 71.875 128 36 0 1 128 1 128 1.98e-65 209
Msa0815900 AT3G02940.3 71.875 128 36 0 1 128 1 128 1.98e-65 209
Msa0815900 AT5G15310.1 71.094 128 37 0 1 128 1 128 1.14e-64 207
Msa0815900 AT5G15310.2 71.094 128 37 0 1 128 1 128 1.82e-64 206
Msa0815900 AT5G15310.4 71.094 128 37 0 1 128 1 128 2.38e-64 204
Msa0815900 AT4G28110.1 69.531 128 39 0 1 128 1 128 5.79e-64 204
Msa0815900 AT3G01140.2 66.197 142 46 1 1 140 1 142 6.69e-64 206
Msa0815900 AT5G16770.4 70.312 128 38 0 1 128 1 128 7.51e-64 205
Msa0815900 AT5G16770.3 70.312 128 38 0 1 128 1 128 7.51e-64 205
Msa0815900 AT4G38620.1 48.815 211 97 3 1 211 1 200 1.08e-63 203
Msa0815900 AT5G16770.1 70.312 128 38 0 1 128 1 128 1.77e-63 204
Msa0815900 AT5G16770.2 70.312 128 38 0 1 128 1 128 1.77e-63 204
Msa0815900 AT1G34670.1 70.312 128 38 0 1 128 1 128 8.41e-63 204
Msa0815900 AT5G65230.1 70.312 128 38 0 1 128 1 128 1.25e-62 201
Msa0815900 AT4G21440.1 52.406 187 79 1 1 177 1 187 2.01e-62 202
Msa0815900 AT5G10280.1 67.188 128 42 0 1 128 1 128 6.14e-62 201
Msa0815900 AT5G26660.1 68.217 129 41 0 1 129 1 129 1.06e-61 200
Msa0815900 AT4G05100.1 68.992 129 39 1 1 128 1 129 8.09e-61 197
Msa0815900 AT3G01140.1 65.942 138 45 1 5 140 48 185 1.03e-60 199
Msa0815900 AT1G09540.1 68.462 130 41 0 1 130 1 130 1.12e-60 198
Msa0815900 AT4G17785.2 68.217 129 40 1 1 128 1 129 4.22e-60 196
Msa0815900 AT5G61420.2 62.411 141 53 0 1 141 1 141 4.70e-60 196
Msa0815900 AT4G17785.1 68.217 129 40 1 1 128 1 129 4.92e-60 196
Msa0815900 AT4G09460.1 59.028 144 59 0 1 144 1 144 1.58e-59 191
Msa0815900 AT1G57560.1 66.923 130 43 0 1 130 1 130 1.65e-59 194
Msa0815900 AT2G16720.1 61.029 136 53 0 1 136 1 136 3.21e-59 191
Msa0815900 AT1G57560.2 66.923 130 43 0 1 130 1 130 3.51e-59 191
Msa0815900 AT3G13540.1 58.503 147 60 1 5 151 16 161 2.54e-58 188
Msa0815900 AT1G22640.1 58.108 148 61 1 1 147 1 148 2.60e-58 189
Msa0815900 AT1G18570.1 60.274 146 55 2 1 145 1 144 3.24e-58 191
Msa0815900 AT1G06180.1 71.552 116 33 0 1 116 1 116 3.49e-58 188
Msa0815900 AT5G07690.1 37.658 316 170 6 1 297 1 308 5.60e-58 190
Msa0815900 AT5G07700.1 63.910 133 48 0 1 133 1 133 1.67e-57 189
Msa0815900 AT5G07700.2 63.910 133 48 0 1 133 1 133 1.67e-57 189
Msa0815900 AT4G34990.1 57.931 145 61 0 1 145 1 145 2.06e-57 187
Msa0815900 AT1G35515.1 50.867 173 73 2 1 173 1 161 3.90e-57 184
Msa0815900 AT4G01680.3 60.544 147 56 1 1 145 1 147 6.62e-57 184
Msa0815900 AT3G23250.1 57.823 147 50 1 1 135 1 147 9.74e-57 186
Msa0815900 AT1G74080.1 55.215 163 71 1 1 161 1 163 1.33e-56 187
Msa0815900 AT5G56110.1 59.864 147 59 0 1 147 1 147 2.04e-56 186
Msa0815900 AT4G01680.1 60.544 147 56 1 1 145 1 147 2.45e-56 186
Msa0815900 AT2G31180.1 67.797 118 38 0 1 118 1 118 6.65e-56 182
Msa0815900 AT5G54230.1 66.406 128 43 0 1 128 1 128 1.23e-55 184
Msa0815900 AT3G47600.1 54.819 166 59 3 1 153 1 163 3.47e-55 183
Msa0815900 AT5G60890.1 58.042 143 57 1 1 143 1 140 1.28e-54 180
Msa0815900 AT3G12720.1 40.711 253 124 5 1 231 12 260 6.02e-54 179
Msa0815900 AT5G49330.1 66.379 116 39 0 1 116 1 116 6.54e-54 180
Msa0815900 AT1G16490.1 67.826 115 37 0 2 116 4 118 1.52e-53 177
Msa0815900 AT2G47460.1 53.947 152 70 0 1 152 1 152 1.97e-53 179
Msa0815900 AT5G62470.2 64.706 119 42 0 1 119 1 119 4.80e-53 178
Msa0815900 AT4G01680.2 55.975 159 56 2 1 145 1 159 6.17e-53 177
Msa0815900 AT1G08810.1 63.934 122 44 0 1 122 1 122 7.50e-53 175
Msa0815900 AT3G28910.1 65.574 122 42 0 1 122 1 122 1.55e-52 176
Msa0815900 AT3G62610.1 65.517 116 40 0 1 116 1 116 2.75e-52 176
Msa0815900 AT1G56160.1 67.826 115 37 0 2 116 4 118 2.90e-52 174
Msa0815900 AT1G79180.1 43.961 207 110 2 2 202 4 210 4.74e-52 174
Msa0815900 AT5G62470.1 64.706 119 41 1 1 119 1 118 1.41e-51 174
Msa0815900 AT1G74650.1 64.706 119 42 0 1 119 1 119 2.39e-51 173
Msa0815900 AT3G13890.2 53.165 158 72 1 1 158 1 156 2.77e-51 174
Msa0815900 AT1G63910.1 59.375 128 52 0 1 128 1 128 2.78e-51 174
Msa0815900 AT3G28470.1 62.308 130 49 0 1 130 1 130 4.22e-51 172
Msa0815900 AT3G12820.1 65.517 116 40 0 3 118 5 120 1.74e-50 168
Msa0815900 AT1G74430.1 60.156 128 51 0 1 128 1 128 2.22e-49 166
Msa0815900 AT1G18710.1 57.364 129 55 0 1 129 1 129 1.45e-48 164
Msa0815900 AT3G13890.1 50.299 167 72 2 1 158 1 165 3.89e-48 166
Msa0815900 AT5G12870.1 67.593 108 35 0 12 119 18 125 1.91e-47 161
Msa0815900 AT3G08500.1 64.545 110 39 0 8 117 26 135 2.57e-45 157
Msa0815900 AT1G79180.2 37.917 240 110 3 2 202 4 243 2.89e-45 157
Msa0815900 AT3G24310.1 64.486 107 38 0 11 117 17 123 1.15e-44 154
Msa0815900 AT3G01530.1 62.264 106 40 0 12 117 25 130 1.41e-44 151
Msa0815900 AT5G23000.1 58.974 117 47 1 1 116 1 117 1.55e-44 155
Msa0815900 AT4G13480.1 65.714 105 36 0 13 117 7 111 1.67e-44 153
Msa0815900 AT3G49690.1 59.829 117 46 1 1 116 1 117 1.67e-44 154
Msa0815900 AT5G57620.1 58.974 117 47 1 1 116 1 117 2.44e-44 155
Msa0815900 AT5G65790.1 58.974 117 47 1 1 116 1 117 2.55e-44 155
Msa0815900 AT2G36890.1 54.545 132 58 2 1 130 1 132 3.02e-44 154
Msa0815900 AT2G36890.2 54.545 132 58 2 1 130 42 173 4.97e-44 154
Msa0815900 AT4G37780.1 56.410 117 50 1 1 116 1 117 7.29e-43 150
Msa0815900 AT1G68320.1 56.034 116 51 0 12 127 19 134 7.95e-43 149
Msa0815900 AT5G40350.1 59.633 109 44 0 12 120 17 125 1.70e-42 146
Msa0815900 AT5G14750.1 40.291 206 103 6 13 217 17 203 2.28e-42 145
Msa0815900 AT3G06490.1 55.833 120 53 0 8 127 15 134 2.76e-42 149
Msa0815900 AT3G27810.1 37.019 208 124 4 12 214 20 225 2.77e-42 146
Msa0815900 AT2G32460.1 60.748 107 42 0 11 117 17 123 4.00e-42 152
Msa0815900 AT2G32460.2 60.748 107 42 0 11 117 5 111 4.38e-42 152
Msa0815900 AT1G25340.1 54.783 115 52 0 13 127 19 133 5.30e-42 147
Msa0815900 AT5G06100.1 56.364 110 48 0 8 117 28 137 6.42e-42 151
Msa0815900 AT5G52260.1 63.107 103 38 0 13 115 13 115 2.33e-41 145
Msa0815900 AT5G06100.5 56.364 110 48 0 8 117 28 137 2.78e-41 150
Msa0815900 AT5G06100.2 56.364 110 48 0 8 117 28 137 2.78e-41 150
Msa0815900 AT5G06100.3 56.364 110 48 0 8 117 28 137 2.78e-41 150
Msa0815900 AT5G06100.4 56.364 110 48 0 8 117 28 137 2.78e-41 150
Msa0815900 AT5G55020.1 59.633 109 44 0 10 118 24 132 2.99e-41 150
Msa0815900 AT3G30210.1 46.012 163 85 2 11 172 26 186 3.02e-41 145
Msa0815900 AT1G48000.1 53.448 116 54 0 10 125 30 145 7.49e-41 143
Msa0815900 AT5G26660.2 74.118 85 22 0 45 129 14 98 7.69e-41 145
Msa0815900 AT4G25560.1 60.377 106 42 0 13 118 11 116 1.46e-40 143
Msa0815900 AT3G11440.2 56.604 106 46 0 12 117 41 146 1.57e-40 147
Msa0815900 AT5G40330.1 39.070 215 113 7 13 224 13 212 4.04e-40 140
Msa0815900 AT3G11440.3 56.604 106 46 0 12 117 41 146 6.00e-40 147
Msa0815900 AT3G11440.4 56.604 106 46 0 12 117 41 146 6.00e-40 147
Msa0815900 AT3G11440.1 56.604 106 46 0 12 117 41 146 6.00e-40 147
Msa0815900 AT3G46130.1 57.391 115 47 1 11 123 8 122 8.10e-40 141
Msa0815900 AT2G47190.1 53.509 114 53 0 12 125 20 133 9.61e-40 141
Msa0815900 AT5G35550.1 36.744 215 118 4 12 212 14 224 9.90e-40 140
Msa0815900 AT5G59780.3 60.000 105 42 0 13 117 9 113 1.30e-39 139
Msa0815900 AT2G26960.1 57.522 113 47 1 9 121 17 128 2.20e-38 141
Msa0815900 AT4G26930.1 48.148 135 66 2 10 144 17 147 4.39e-38 139
Msa0815900 AT3G27920.1 43.243 148 76 1 13 152 15 162 1.01e-37 134
Msa0815900 AT1G25340.2 50.420 119 54 1 13 131 19 132 1.35e-37 135
Msa0815900 AT1G25340.3 50.420 119 54 1 13 131 19 132 2.54e-37 135
Msa0815900 AT5G49620.1 50.000 120 60 0 8 127 22 141 4.33e-37 135
Msa0815900 AT3G53200.1 56.731 104 45 0 12 115 9 112 1.01e-36 132
Msa0815900 AT3G48920.1 54.808 104 47 0 13 116 19 122 1.03e-36 133
Msa0815900 AT5G52600.1 48.819 127 56 1 12 129 12 138 7.62e-36 129
Msa0815900 AT3G47600.2 49.650 143 52 4 24 153 22 157 8.58e-35 129
Msa0815900 AT5G49620.2 44.776 134 60 1 8 127 22 155 1.55e-33 126
Msa0815900 AT1G66370.1 54.783 115 48 1 1 115 1 111 4.78e-33 122
Msa0815900 AT5G14750.3 38.710 186 89 7 38 217 3 169 1.50e-31 116
Msa0815900 AT1G66380.1 58.095 105 44 0 11 115 7 111 4.34e-31 114
Msa0815900 AT1G56650.1 52.672 131 53 2 11 133 7 136 9.59e-31 117
Msa0815900 AT1G66390.1 59.048 105 43 0 11 115 7 111 1.08e-30 116
Msa0815900 AT5G35550.2 63.750 80 29 0 39 118 44 123 7.42e-30 114
Msa0815900 AT3G27810.2 34.857 175 107 4 45 214 4 176 1.31e-29 112
Msa0815900 AT3G60460.1 50.962 104 50 1 12 114 11 114 1.67e-29 115
Msa0815900 AT3G12820.2 69.444 72 22 0 47 118 1 72 1.77e-29 112
Msa0815900 AT3G46130.3 63.415 82 28 1 44 123 9 90 1.81e-29 112
Msa0815900 AT2G26950.1 43.750 128 71 1 9 135 13 140 1.92e-29 116
Msa0815900 AT5G40350.2 64.474 76 27 0 45 120 5 80 3.85e-29 110
Msa0815900 AT3G46130.4 64.198 81 27 1 45 123 20 100 3.88e-29 112
Msa0815900 AT5G59780.2 67.123 73 24 0 45 117 20 92 4.05e-29 111
Msa0815900 AT3G53200.2 67.606 71 23 0 45 115 9 79 4.40e-28 108
Msa0815900 AT1G22640.3 57.778 90 37 1 59 147 2 91 9.51e-28 107
Msa0815900 AT5G58850.1 49.074 108 52 2 12 118 103 208 1.05e-27 112
Msa0815900 AT1G18960.1 45.299 117 61 2 14 130 10 123 1.35e-27 110
Msa0815900 AT5G11050.1 47.573 103 51 2 14 115 105 205 2.06e-27 111
Msa0815900 AT4G18770.1 43.651 126 68 2 9 133 212 335 4.82e-27 110
Msa0815900 AT1G71030.2 46.729 107 50 2 51 157 5 104 1.39e-25 101
Msa0815900 AT1G71030.1 46.729 107 50 2 51 157 19 118 2.17e-25 101
Msa0815900 AT5G02320.3 37.931 145 83 3 12 151 65 207 1.35e-24 104
Msa0815900 AT5G02320.1 37.931 145 83 3 12 151 125 267 1.51e-24 104
Msa0815900 AT5G02320.2 37.931 145 83 3 12 151 125 267 1.51e-24 104
Msa0815900 AT2G39880.1 49.057 106 45 2 14 115 50 150 1.82e-24 102
Msa0815900 AT3G27785.1 45.370 108 56 2 9 115 184 289 4.07e-24 102
Msa0815900 AT3G55730.1 42.466 146 68 5 14 148 56 196 4.93e-24 101
Msa0815900 AT3G09370.2 46.667 105 53 2 12 115 133 235 1.08e-23 101
Msa0815900 AT3G09370.1 46.667 105 53 2 12 115 128 230 1.21e-23 101
Msa0815900 AT3G09370.3 46.667 105 53 2 12 115 141 243 1.61e-23 101
Msa0815900 AT3G09230.1 45.794 107 49 2 14 116 55 156 2.47e-23 99.8
Msa0815900 AT5G67300.1 45.631 103 53 2 14 115 6 106 3.22e-23 97.8
Msa0815900 AT3G50060.1 45.631 103 53 2 14 115 6 106 3.88e-23 97.8
Msa0815900 AT5G40360.1 40.741 108 62 2 12 119 156 261 1.48e-22 97.1
Msa0815900 AT4G37260.1 45.631 103 53 2 14 115 13 113 3.05e-22 95.5
Msa0815900 AT5G11510.3 44.340 106 56 2 12 116 79 182 3.52e-22 97.8
Msa0815900 AT5G11510.1 44.340 106 56 2 12 116 79 182 3.52e-22 97.8
Msa0815900 AT5G11510.4 44.340 106 56 2 12 116 79 182 3.52e-22 97.8
Msa0815900 AT5G11510.2 44.340 106 56 2 12 116 79 182 4.99e-22 97.4
Msa0815900 AT5G11510.5 44.340 106 56 2 12 116 79 182 5.16e-22 97.4
Msa0815900 AT1G69560.1 32.787 183 90 6 9 164 102 278 7.92e-22 94.7
Msa0815900 AT1G69560.2 32.787 183 90 6 9 164 118 294 8.52e-22 94.7
Msa0815900 AT1G66380.3 57.143 77 33 0 39 115 2 78 9.79e-22 88.6
Msa0815900 AT5G14750.4 36.875 160 81 6 59 217 2 142 1.19e-21 89.7
Msa0815900 AT5G14750.2 36.875 160 81 6 59 217 2 142 1.19e-21 89.7
Msa0815900 AT4G32730.5 43.396 106 57 2 12 116 85 188 2.11e-21 95.5
Msa0815900 AT4G32730.4 43.396 106 57 2 12 116 85 188 2.11e-21 95.5
Msa0815900 AT4G32730.3 43.396 106 57 2 12 116 85 188 2.11e-21 95.5
Msa0815900 AT4G32730.2 43.396 106 57 2 12 116 85 188 2.11e-21 95.5
Msa0815900 AT4G32730.1 43.396 106 57 2 12 116 85 188 2.14e-21 95.5
Msa0815900 AT2G23290.1 48.077 104 49 4 14 115 13 113 2.71e-21 92.8
Msa0815900 AT2G25230.1 42.478 113 62 2 9 120 21 131 6.41e-21 90.1
Msa0815900 AT3G23250.2 49.438 89 33 1 59 135 2 90 7.18e-21 89.7
Msa0815900 AT1G17950.1 43.396 106 57 2 14 118 5 108 3.56e-20 88.6
Msa0815900 AT1G26780.2 41.667 108 60 2 12 118 96 201 1.00e-19 89.0
Msa0815900 AT1G26780.1 41.667 108 60 2 12 118 96 201 1.09e-19 87.8
Msa0815900 AT5G61420.1 65.574 61 21 0 81 141 2 62 2.72e-19 86.7
Msa0815900 AT1G73410.1 43.396 106 57 2 14 118 6 109 1.33e-18 84.0
Msa0815900 AT1G73410.2 43.396 106 57 2 14 118 6 109 4.41e-18 81.6
Msa0815900 AT3G29020.1 36.792 106 64 2 14 118 65 168 1.03e-17 81.3
Msa0815900 AT3G29020.2 36.792 106 64 2 14 118 67 170 1.06e-17 82.4
Msa0815900 AT4G00540.2 40.179 112 61 3 12 119 101 210 1.84e-17 82.8
Msa0815900 AT4G00540.1 40.179 112 61 3 12 119 99 208 2.92e-17 82.4
Msa0815900 AT5G40430.1 35.714 112 70 1 9 120 49 158 3.20e-17 80.5
Msa0815900 AT1G66380.2 52.381 84 40 0 11 94 7 90 6.37e-17 75.9
Msa0815900 AT5G14340.2 78.571 42 9 0 88 129 10 51 8.09e-17 77.8
Msa0815900 AT4G33450.1 35.897 117 67 3 3 118 13 122 1.34e-16 78.6
Msa0815900 AT5G17800.1 37.500 104 64 1 14 117 93 195 1.52e-16 79.3
Msa0815900 AT4G28110.2 75.610 41 10 0 88 128 4 44 2.70e-16 76.6
Msa0815900 AT5G15310.3 80.488 41 8 0 88 128 9 49 3.60e-16 77.4
Msa0815900 AT5G59780.1 61.224 49 19 0 70 118 1 49 3.52e-15 72.8
Msa0815900 AT3G46130.2 63.462 52 17 1 74 123 5 56 3.55e-15 73.2
Msa0815900 AT2G37630.1 37.864 103 62 1 17 117 7 109 5.48e-15 75.5
Msa0815900 AT1G22640.2 57.377 61 25 1 88 147 16 76 1.05e-14 72.0
Msa0815900 AT3G28910.2 58.491 53 20 1 77 129 1 51 9.31e-14 70.5
Msa0815900 AT2G02820.3 33.793 145 91 3 17 161 33 172 3.11e-13 70.1
Msa0815900 AT4G25560.2 56.000 50 22 0 69 118 1 50 3.96e-13 68.2
Msa0815900 AT1G74650.3 69.767 43 13 0 77 119 1 43 4.00e-13 68.6
Msa0815900 AT5G39700.1 33.962 106 69 1 13 118 55 159 4.35e-13 67.4
Msa0815900 AT2G02820.1 33.793 145 91 3 17 161 33 172 5.48e-13 69.7
Msa0815900 AT1G14350.2 34.959 123 75 2 17 135 28 149 6.08e-13 69.7
Msa0815900 AT1G14350.1 34.959 123 75 2 17 135 28 149 6.08e-13 69.7
Msa0815900 AT2G02820.2 33.793 145 91 3 17 161 33 172 6.88e-13 69.7
Msa0815900 AT1G74430.2 49.153 59 30 0 70 128 1 59 9.81e-13 66.6

Find 67 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGAGACCTGCCAATTT+AGG 0.179748 5_3:-49637123 None:intergenic
TTTCTCTTTGATTTCAATTA+TGG 0.194553 5_3:-49639143 None:intergenic
ATTTGATACAATGGAGTTAA+TGG 0.202479 5_3:+49639189 Msa0815900:CDS
TAACTCCATTGTATCAAATA+AGG 0.211281 5_3:-49639185 None:intergenic
GTTGTTGTTTAGGTAGATTT+TGG 0.211426 5_3:-49638988 None:intergenic
TCTTCCTTGTTATTATTATT+AGG 0.250376 5_3:-49639352 None:intergenic
ATCAGAATATGAAGAGAAAA+TGG 0.260581 5_3:+49637681 Msa0815900:CDS
ATGGAGATCTTCAAGGAAAT+TGG 0.293705 5_3:-49639311 None:intergenic
TAAGATTGCTTCTCATTTAC+CGG 0.298461 5_3:+49638844 Msa0815900:CDS
ATAACAACAATATGGCCTTT+TGG 0.321530 5_3:+49639380 Msa0815900:CDS
GGTGACTCAAAAGAAGTCTT+TGG 0.330165 5_3:-49639118 None:intergenic
ATCAATTTCATCCTTACTAA+TGG 0.334411 5_3:+49637078 Msa0815900:CDS
GCTAGTGGTTTGTGTGTGTT+AGG 0.344636 5_3:-49638941 None:intergenic
TTAGACACTATAATCTCATT+AGG 0.357457 5_3:-49639247 None:intergenic
CTATTCACAACTTGGCTTTG+TGG 0.360918 5_3:+49636956 Msa0815900:five_prime_UTR
AAAGGAGACCTGCCAATTTA+GGG 0.368352 5_3:-49637122 None:intergenic
CTGGAGAGCTGTCCCTAAAT+TGG 0.368996 5_3:+49637110 Msa0815900:CDS
TTACTAATGGTCAATGTTGC+TGG 0.374011 5_3:+49637091 Msa0815900:CDS
ATCTCATTAGGTTCTATCAT+TGG 0.375201 5_3:-49639235 None:intergenic
GGTTGGTGTAGTTGTTGTTT+AGG 0.382965 5_3:-49638998 None:intergenic
AAAAGTCCTCTCTTTAAATC+TGG 0.383763 5_3:-49637658 None:intergenic
CTGTCTTCTTCTGCAGTCCA+TGG 0.411551 5_3:-49637048 None:intergenic
AGAATGCAATAACAACAATA+TGG 0.412740 5_3:+49639372 Msa0815900:CDS
TGGCCATGGATTCAGAATCT+TGG 0.414339 5_3:+49639515 Msa0815900:CDS
TTCATGCTCAACTTGGGAAC+AGG 0.415682 5_3:+49637713 Msa0815900:CDS
TTGTGAATAGAGAGAGTTAA+GGG 0.416471 5_3:-49636943 None:intergenic
AACTCCATTGTATCAAATAA+GGG 0.417577 5_3:-49639184 None:intergenic
GGCCATGGATTCAGAATCTT+GGG 0.422267 5_3:+49639516 Msa0815900:CDS
TATTAGGCCATTCAAAATCA+AGG 0.431131 5_3:-49639336 None:intergenic
ATTGATCTTCATGCTCAACT+TGG 0.457491 5_3:+49637706 Msa0815900:CDS
AACTCTCTCTATTCACAACT+TGG 0.461988 5_3:+49636948 Msa0815900:five_prime_UTR
GATGACAATGATGTTAATAA+TGG 0.462436 5_3:+49639445 Msa0815900:CDS
CTCAACATGCAGGACTGTTA+AGG 0.472386 5_3:+49637593 Msa0815900:intron
ATTTCATTATCCGTTCTTCC+CGG 0.474711 5_3:-49638863 None:intergenic
TGTCAATTGTCAAAGGTTGT+TGG 0.484587 5_3:-49639042 None:intergenic
TCTTTGATTTCAATTATGGT+TGG 0.487313 5_3:-49639139 None:intergenic
CAAGGAGATGGAGATCTTCA+AGG 0.489487 5_3:-49639318 None:intergenic
AGCAACATTGACCATTAGTA+AGG 0.496175 5_3:-49637089 None:intergenic
TATACACATAATGATAGCTT+AGG 0.501883 5_3:-49636900 None:intergenic
AATAAAGACATCATCCCAAA+AGG 0.512450 5_3:-49639395 None:intergenic
CCAACCATTAGAAAAGGAAC+AGG 0.512623 5_3:+49639015 Msa0815900:CDS
ACTACACCAACCATTAGAAA+AGG 0.512895 5_3:+49639009 Msa0815900:CDS
ATTCTTGAGTAGTTGCTAAG+AGG 0.513656 5_3:-49639493 None:intergenic
GATACAATGGAGTTAATGGA+TGG 0.515455 5_3:+49639193 Msa0815900:CDS
GCCATTCAAAATCAAGGAGA+TGG 0.520472 5_3:-49639330 None:intergenic
CATGGACTGCAGAAGAAGAC+AGG 0.521590 5_3:+49637049 Msa0815900:CDS
TTCTCATTTACCGGGAAGAA+CGG 0.532372 5_3:+49638853 Msa0815900:CDS
TGATGAAGAAGTGGATGAAG+AGG 0.532773 5_3:-49639272 None:intergenic
AACACCCTTATTTGATACAA+TGG 0.533111 5_3:+49639180 Msa0815900:CDS
TGCCCAAGATTCTGAATCCA+TGG 0.533477 5_3:-49639518 None:intergenic
GTTGTGAATAGAGAGAGTTA+AGG 0.541062 5_3:-49636944 None:intergenic
CAACTACTCAAGAATGGCCA+TGG 0.542456 5_3:+49639501 Msa0815900:CDS
TTGATCTTCATGCTCAACTT+GGG 0.546382 5_3:+49637707 Msa0815900:CDS
CAACCTTGTTGTGACAAAGT+AGG 0.546413 5_3:+49637012 Msa0815900:CDS
AGAGCTGTCCCTAAATTGGC+AGG 0.553725 5_3:+49637114 Msa0815900:CDS
TCTTAGCAACTACTCAAGAA+TGG 0.559850 5_3:+49639495 Msa0815900:CDS
CTTGCATTAGAGAGTGCTAG+TGG 0.562361 5_3:-49638956 None:intergenic
TTGAGGCCAGATTTAAAGAG+AGG 0.565291 5_3:+49637652 Msa0815900:CDS
AAGATTGCTTCTCATTTACC+GGG 0.583628 5_3:+49638845 Msa0815900:CDS
TGGTCAATGTCAATTGTCAA+AGG 0.584719 5_3:-49639049 None:intergenic
AATTGAGGAGCATAATAAAG+AGG 0.587245 5_3:+49639087 Msa0815900:CDS
AGAGAGTTAAGGGAGTTGAG+AGG 0.599787 5_3:-49636933 None:intergenic
TGATGAATATGATGAAGAAG+TGG 0.612083 5_3:-49639281 None:intergenic
AATCCTACTTTGTCACAACA+AGG 0.616257 5_3:-49637015 None:intergenic
TTAGATGGACAAATTACTTG+AGG 0.624742 5_3:+49637635 Msa0815900:CDS
CATGCAGGACTGTTAAGGTG+TGG 0.636613 5_3:+49637598 Msa0815900:intron
ATGGCCTAATAATAATAACA+AGG 0.688928 5_3:+49639348 Msa0815900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTAGTAAAATATTA+GGG - chr5_3:49638798-49638817 None:intergenic 10.0%
!! AAAGTAATTAGTAAAATATT+AGG - chr5_3:49638799-49638818 None:intergenic 10.0%
!! ATAATGAAATAAAAAATCAT+TGG + chr5_3:49638876-49638895 Msa0815900:CDS 10.0%
!!! TGTTTTGAAAAAAGAATAAT+GGG + chr5_3:49636985-49637004 Msa0815900:exon 15.0%
!! TCATAGATTACAAATAATTT+CGG + chr5_3:49637258-49637277 Msa0815900:intron 15.0%
!!! TTCAAAAATATTTTGCATTA+TGG + chr5_3:49637412-49637431 Msa0815900:intron 15.0%
!!! CGTATGAAAATTTTATAATA+TGG + chr5_3:49638009-49638028 Msa0815900:intron 15.0%
!! CTTTAAATTCTAATCATAAA+TGG - chr5_3:49638083-49638102 None:intergenic 15.0%
!!! ATATTATGATGAAATCTTTT+AGG + chr5_3:49638284-49638303 Msa0815900:intron 15.0%
!!! GTTATTTTAAACATAAAGAA+AGG - chr5_3:49638316-49638335 None:intergenic 15.0%
!! ATAATTTGAATAAAGTTATG+TGG + chr5_3:49638340-49638359 Msa0815900:intron 15.0%
!! ATTATCTATATAAAAAGGAT+AGG + chr5_3:49638372-49638391 Msa0815900:intron 15.0%
!! TTATCTATATAAAAAGGATA+GGG + chr5_3:49638373-49638392 Msa0815900:intron 15.0%
!! ACAAAAAATAATGTAACTAT+TGG - chr5_3:49638757-49638776 None:intergenic 15.0%
!!! GTGTTTTGAAAAAAGAATAA+TGG + chr5_3:49636984-49637003 Msa0815900:exon 20.0%
!!! TCAATCATTGTTTTAATTTG+TGG + chr5_3:49637235-49637254 Msa0815900:intron 20.0%
!! TGTTTAATTCAATTGCAATT+TGG + chr5_3:49637368-49637387 Msa0815900:intron 20.0%
!!! ATATTTTGCATTATGGTTAA+TGG + chr5_3:49637419-49637438 Msa0815900:intron 20.0%
!!! TATTTTGCATTATGGTTAAT+GGG + chr5_3:49637420-49637439 Msa0815900:intron 20.0%
!! AAATAAACATATGTAGAACT+GGG - chr5_3:49637764-49637783 None:intergenic 20.0%
!! AAAATAAACATATGTAGAAC+TGG - chr5_3:49637765-49637784 None:intergenic 20.0%
!! TGATTAATCATTAGTAAGAA+AGG - chr5_3:49637789-49637808 None:intergenic 20.0%
!! TAAACTAATTACAACTTGAA+GGG - chr5_3:49637942-49637961 None:intergenic 20.0%
!! ATAAACTAATTACAACTTGA+AGG - chr5_3:49637943-49637962 None:intergenic 20.0%
!!! ATAAAGTCATTCTTTCTTTT+AGG + chr5_3:49638235-49638254 Msa0815900:intron 20.0%
!!! TTTTTTCTTTCTTTTGTAGA+TGG + chr5_3:49638819-49638838 Msa0815900:intron 20.0%
!!! CAATTTTTGTTTCAATTTTG+TGG - chr5_3:49639072-49639091 None:intergenic 20.0%
!! CAAAATTGAAACAAAAATTG+AGG + chr5_3:49639072-49639091 Msa0815900:CDS 20.0%
!!! TTTCTCTTTGATTTCAATTA+TGG - chr5_3:49639146-49639165 None:intergenic 20.0%
!!! TCTTCCTTGTTATTATTATT+AGG - chr5_3:49639355-49639374 None:intergenic 20.0%
! TATACACATAATGATAGCTT+AGG - chr5_3:49636903-49636922 None:intergenic 25.0%
!! TTGAAAAAAGAATAATGGGA+AGG + chr5_3:49636989-49637008 Msa0815900:exon 25.0%
! ACAAAGTAGGATTGAAAAAA+GGG + chr5_3:49637025-49637044 Msa0815900:CDS 25.0%
! ATCAATTTCATCCTTACTAA+TGG + chr5_3:49637078-49637097 Msa0815900:CDS 25.0%
! AAAAAATCAAGAGCAATGAA+AGG - chr5_3:49637143-49637162 None:intergenic 25.0%
!! ATGAGATTTTTGATGTTTCT+GGG - chr5_3:49637312-49637331 None:intergenic 25.0%
!! ATGGTTAATGGGATTAATTT+TGG + chr5_3:49637431-49637450 Msa0815900:intron 25.0%
! ATCAGAATATGAAGAGAAAA+TGG + chr5_3:49637681-49637700 Msa0815900:CDS 25.0%
! TAACTGTGTTACATTTCAAT+TGG - chr5_3:49638561-49638580 None:intergenic 25.0%
! TGAAATGTAACACAGTTATT+TGG + chr5_3:49638563-49638582 Msa0815900:intron 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG + chr5_3:49638910-49638929 Msa0815900:CDS 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG + chr5_3:49638911-49638930 Msa0815900:CDS 25.0%
!!! TTGTTGTTTAGGTAGATTTT+GGG - chr5_3:49638990-49639009 None:intergenic 25.0%
!! TCTTTGATTTCAATTATGGT+TGG - chr5_3:49639142-49639161 None:intergenic 25.0%
! AACTCCATTGTATCAAATAA+GGG - chr5_3:49639187-49639206 None:intergenic 25.0%
! TAACTCCATTGTATCAAATA+AGG - chr5_3:49639188-49639207 None:intergenic 25.0%
! ATTTGATACAATGGAGTTAA+TGG + chr5_3:49639189-49639208 Msa0815900:CDS 25.0%
! TTAGACACTATAATCTCATT+AGG - chr5_3:49639250-49639269 None:intergenic 25.0%
! ATGGCCTAATAATAATAACA+AGG + chr5_3:49639348-49639367 Msa0815900:CDS 25.0%
! AGAATGCAATAACAACAATA+TGG + chr5_3:49639372-49639391 Msa0815900:CDS 25.0%
! GATGACAATGATGTTAATAA+TGG + chr5_3:49639445-49639464 Msa0815900:CDS 25.0%
TTGTGAATAGAGAGAGTTAA+GGG - chr5_3:49636946-49636965 None:intergenic 30.0%
GACAAAGTAGGATTGAAAAA+AGG + chr5_3:49637024-49637043 Msa0815900:CDS 30.0%
CAAATAATTTCGGTCAAATG+TGG + chr5_3:49637268-49637287 Msa0815900:intron 30.0%
! GATGAGATTTTTGATGTTTC+TGG - chr5_3:49637313-49637332 None:intergenic 30.0%
GAAAAAGTTGTAGACTTAGA+TGG + chr5_3:49637620-49637639 Msa0815900:CDS 30.0%
TTAGATGGACAAATTACTTG+AGG + chr5_3:49637635-49637654 Msa0815900:CDS 30.0%
AAAAGTCCTCTCTTTAAATC+TGG - chr5_3:49637661-49637680 None:intergenic 30.0%
ATGACAACTAATGACAACAA+AGG + chr5_3:49637879-49637898 Msa0815900:intron 30.0%
GATTAGAAGTAAAAAGAACG+TGG + chr5_3:49637972-49637991 Msa0815900:intron 30.0%
!! TTTCTTAACTTGCATGACAT+TGG + chr5_3:49638185-49638204 Msa0815900:intron 30.0%
! GATGAAACTTTTCTTTTCAG+TGG + chr5_3:49638210-49638229 Msa0815900:intron 30.0%
TCAAATAACTCAACTTGAGA+CGG - chr5_3:49638604-49638623 None:intergenic 30.0%
TGAAACAAATGCAATACACT+CGG + chr5_3:49638621-49638640 Msa0815900:intron 30.0%
TAAGATTGCTTCTCATTTAC+CGG + chr5_3:49638844-49638863 Msa0815900:CDS 30.0%
!!! GTTGTTGTTTAGGTAGATTT+TGG - chr5_3:49638991-49639010 None:intergenic 30.0%
! TTTTCCTGTTCCTTTTCTAA+TGG - chr5_3:49639022-49639041 None:intergenic 30.0%
! AATTGAGGAGCATAATAAAG+AGG + chr5_3:49639087-49639106 Msa0815900:CDS 30.0%
! AACACCCTTATTTGATACAA+TGG + chr5_3:49639180-49639199 Msa0815900:CDS 30.0%
ATCTCATTAGGTTCTATCAT+TGG - chr5_3:49639238-49639257 None:intergenic 30.0%
TGATGAATATGATGAAGAAG+TGG - chr5_3:49639284-49639303 None:intergenic 30.0%
TATTAGGCCATTCAAAATCA+AGG - chr5_3:49639339-49639358 None:intergenic 30.0%
! ATAACAACAATATGGCCTTT+TGG + chr5_3:49639380-49639399 Msa0815900:CDS 30.0%
! TAACAACAATATGGCCTTTT+GGG + chr5_3:49639381-49639400 Msa0815900:CDS 30.0%
AATAAAGACATCATCCCAAA+AGG - chr5_3:49639398-49639417 None:intergenic 30.0%
GTTGTGAATAGAGAGAGTTA+AGG - chr5_3:49636947-49636966 None:intergenic 35.0%
AACTCTCTCTATTCACAACT+TGG + chr5_3:49636948-49636967 Msa0815900:five_prime_UTR 35.0%
AATCCTACTTTGTCACAACA+AGG - chr5_3:49637018-49637037 None:intergenic 35.0%
AGCAACATTGACCATTAGTA+AGG - chr5_3:49637092-49637111 None:intergenic 35.0%
TTACTAATGGTCAATGTTGC+TGG + chr5_3:49637091-49637110 Msa0815900:CDS 35.0%
! ATGTGGTTGATACATATAGC+CGG + chr5_3:49637285-49637304 Msa0815900:intron 35.0%
!!! ATTTTTGATGTTTCTGGGAC+CGG - chr5_3:49637307-49637326 None:intergenic 35.0%
! TCCTATCTAGCTTGATAGAT+TGG + chr5_3:49637461-49637480 Msa0815900:intron 35.0%
! CCTATCTAGCTTGATAGATT+GGG + chr5_3:49637462-49637481 Msa0815900:intron 35.0%
ATTGATCTTCATGCTCAACT+TGG + chr5_3:49637706-49637725 Msa0815900:CDS 35.0%
TTGATCTTCATGCTCAACTT+GGG + chr5_3:49637707-49637726 Msa0815900:CDS 35.0%
ATATGTAGAACTGGGTGAAA+TGG - chr5_3:49637756-49637775 None:intergenic 35.0%
! TTTTCATACGCCTCTTTTCA+TGG - chr5_3:49637999-49638018 None:intergenic 35.0%
CATTGAAACTCACACAAAAG+AGG - chr5_3:49638485-49638504 None:intergenic 35.0%
AAGATTGCTTCTCATTTACC+GGG + chr5_3:49638845-49638864 Msa0815900:CDS 35.0%
ATTTCATTATCCGTTCTTCC+CGG - chr5_3:49638866-49638885 None:intergenic 35.0%
ACTACACCAACCATTAGAAA+AGG + chr5_3:49639009-49639028 Msa0815900:CDS 35.0%
TGTCAATTGTCAAAGGTTGT+TGG - chr5_3:49639045-49639064 None:intergenic 35.0%
TGGTCAATGTCAATTGTCAA+AGG - chr5_3:49639052-49639071 None:intergenic 35.0%
GATACAATGGAGTTAATGGA+TGG + chr5_3:49639193-49639212 Msa0815900:CDS 35.0%
ATGGAGATCTTCAAGGAAAT+TGG - chr5_3:49639314-49639333 None:intergenic 35.0%
! TCCATCTCCTTGATTTTGAA+TGG + chr5_3:49639329-49639348 Msa0815900:CDS 35.0%
ATTCTTGAGTAGTTGCTAAG+AGG - chr5_3:49639496-49639515 None:intergenic 35.0%
TCTTAGCAACTACTCAAGAA+TGG + chr5_3:49639495-49639514 Msa0815900:CDS 35.0%
!! CTATTCACAACTTGGCTTTG+TGG + chr5_3:49636956-49636975 Msa0815900:five_prime_UTR 40.0%
! CAACCTTGTTGTGACAAAGT+AGG + chr5_3:49637012-49637031 Msa0815900:CDS 40.0%
TAGGATTGAAAAAAGGGCCA+TGG + chr5_3:49637031-49637050 Msa0815900:CDS 40.0%
AAAGGAGACCTGCCAATTTA+GGG - chr5_3:49637125-49637144 None:intergenic 40.0%
CCCAATCTATCAAGCTAGAT+AGG - chr5_3:49637465-49637484 None:intergenic 40.0%
! ATCTAGCTTGATAGATTGGG+TGG + chr5_3:49637465-49637484 Msa0815900:intron 40.0%
TCAATTGTGACTCAACATGC+AGG + chr5_3:49637583-49637602 Msa0815900:intron 40.0%
TTGAGGCCAGATTTAAAGAG+AGG + chr5_3:49637652-49637671 Msa0815900:CDS 40.0%
GTGATGCAAGAATTACGCAT+GGG + chr5_3:49638257-49638276 Msa0815900:intron 40.0%
AAGTCATAGCTCGTTGTAAC+CGG + chr5_3:49638439-49638458 Msa0815900:intron 40.0%
ACACAAAAGAGGTTGGACTA+GGG - chr5_3:49638474-49638493 None:intergenic 40.0%
GAAACTCACACAAAAGAGGT+TGG - chr5_3:49638481-49638500 None:intergenic 40.0%
TTCTCATTTACCGGGAAGAA+CGG + chr5_3:49638853-49638872 Msa0815900:CDS 40.0%
!! GGTTGGTGTAGTTGTTGTTT+AGG - chr5_3:49639001-49639020 None:intergenic 40.0%
! CCTGTTCCTTTTCTAATGGT+TGG - chr5_3:49639018-49639037 None:intergenic 40.0%
CCAACCATTAGAAAAGGAAC+AGG + chr5_3:49639015-49639034 Msa0815900:CDS 40.0%
GGTGACTCAAAAGAAGTCTT+TGG - chr5_3:49639121-49639140 None:intergenic 40.0%
TGATGAAGAAGTGGATGAAG+AGG - chr5_3:49639275-49639294 None:intergenic 40.0%
GCCATTCAAAATCAAGGAGA+TGG - chr5_3:49639333-49639352 None:intergenic 40.0%
AGAGAGTTAAGGGAGTTGAG+AGG - chr5_3:49636936-49636955 None:intergenic 45.0%
GAAAGGAGACCTGCCAATTT+AGG - chr5_3:49637126-49637145 None:intergenic 45.0%
CTCAACATGCAGGACTGTTA+AGG + chr5_3:49637593-49637612 Msa0815900:intron 45.0%
TTCATGCTCAACTTGGGAAC+AGG + chr5_3:49637713-49637732 Msa0815900:CDS 45.0%
GTAGAACTGGGTGAAATGGT+TGG - chr5_3:49637752-49637771 None:intergenic 45.0%
AGAACGTGGTCCATGAAAAG+AGG + chr5_3:49637986-49638005 Msa0815900:intron 45.0%
GGTGATGCAAGAATTACGCA+TGG + chr5_3:49638256-49638275 Msa0815900:intron 45.0%
AGTCATAGCTCGTTGTAACC+GGG + chr5_3:49638440-49638459 Msa0815900:intron 45.0%
CACACAAAAGAGGTTGGACT+AGG - chr5_3:49638475-49638494 None:intergenic 45.0%
ACTCGGATGTCTTAGAGCTT+TGG + chr5_3:49638638-49638657 Msa0815900:intron 45.0%
! GCTAGTGGTTTGTGTGTGTT+AGG - chr5_3:49638944-49638963 None:intergenic 45.0%
!! CTTGCATTAGAGAGTGCTAG+TGG - chr5_3:49638959-49638978 None:intergenic 45.0%
CAAGGAGATGGAGATCTTCA+AGG - chr5_3:49639321-49639340 None:intergenic 45.0%
CAACTACTCAAGAATGGCCA+TGG + chr5_3:49639501-49639520 Msa0815900:CDS 45.0%
TGGCCATGGATTCAGAATCT+TGG + chr5_3:49639515-49639534 Msa0815900:CDS 45.0%
GGCCATGGATTCAGAATCTT+GGG + chr5_3:49639516-49639535 Msa0815900:CDS 45.0%
TGCCCAAGATTCTGAATCCA+TGG - chr5_3:49639521-49639540 None:intergenic 45.0%
!! ATTATATTATCTATATAAAA+AGG + chr5_3:49638367-49638386 Msa0815900:intron 5.0%
CTGTCTTCTTCTGCAGTCCA+TGG - chr5_3:49637051-49637070 None:intergenic 50.0%
! CATGGACTGCAGAAGAAGAC+AGG + chr5_3:49637049-49637068 Msa0815900:CDS 50.0%
CTGGAGAGCTGTCCCTAAAT+TGG + chr5_3:49637110-49637129 Msa0815900:CDS 50.0%
AGAGCTGTCCCTAAATTGGC+AGG + chr5_3:49637114-49637133 Msa0815900:CDS 50.0%
CATGCAGGACTGTTAAGGTG+TGG + chr5_3:49637598-49637617 Msa0815900:intron 50.0%
!! TGGGTGAAATGGTTGGTGAG+GGG - chr5_3:49637745-49637764 None:intergenic 50.0%
!! CTGGGTGAAATGGTTGGTGA+GGG - chr5_3:49637746-49637765 None:intergenic 50.0%
! ACTGGGTGAAATGGTTGGTG+AGG - chr5_3:49637747-49637766 None:intergenic 50.0%
! TGGACTAGGGTTCAAACACC+CGG - chr5_3:49638461-49638480 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 49636898 49639555 49636898 ID=Msa0815900;Name=Msa0815900
chr5_3 mRNA 49636898 49639555 49636898 ID=Msa0815900-mRNA-1;Parent=Msa0815900;Name=Msa0815900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=105|1|0.66|1|1|1|3|0|326
chr5_3 exon 49636898 49637135 49636898 ID=Msa0815900-mRNA-1:exon:14934;Parent=Msa0815900-mRNA-1
chr5_3 exon 49637605 49637734 49637605 ID=Msa0815900-mRNA-1:exon:14935;Parent=Msa0815900-mRNA-1
chr5_3 exon 49638838 49639555 49638838 ID=Msa0815900-mRNA-1:exon:14936;Parent=Msa0815900-mRNA-1
chr5_3 five_prime_UTR 49636898 49637002 49636898 ID=Msa0815900-mRNA-1:five_prime_utr;Parent=Msa0815900-mRNA-1
chr5_3 CDS 49637003 49637135 49637003 ID=Msa0815900-mRNA-1:cds;Parent=Msa0815900-mRNA-1
chr5_3 CDS 49637605 49637734 49637605 ID=Msa0815900-mRNA-1:cds;Parent=Msa0815900-mRNA-1
chr5_3 CDS 49638838 49639555 49638838 ID=Msa0815900-mRNA-1:cds;Parent=Msa0815900-mRNA-1
Gene Sequence

>Msa0815900

ATGGGAAGGCAACCTTGTTGTGACAAAGTAGGATTGAAAAAAGGGCCATGGACTGCAGAAGAAGACAGGAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGACTGTTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAGATTGCTTCTCATTTACCGGGAAGAACGGATAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTAACACACACAAACCACTAGCACTCTCTAATGCAAGTGATCAAACCCAAAATCTACCTAAACAACAACTACACCAACCATTAGAAAAGGAACAGGAAAACCAACAACCTTTGACAATTGACATTGACCACAAAATTGAAACAAAAATTGAGGAGCATAATAAAGAGGTTGAGAAGCCAAAGACTTCTTTTGAGTCACCAACCATAATTGAAATCAAAGAGAAAGATGAAATTACAATAACACCCTTATTTGATACAATGGAGTTAATGGATGGATTTTGTATAGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCCTCTTCATCCACTTCTTCATCATATTCATCAAATTCAACCAATTTCCTTGAAGATCTCCATCTCCTTGATTTTGAATGGCCTAATAATAATAACAAGGAAGAATGCAATAACAACAATATGGCCTTTTGGGATGATGTCTTTATTAGTAGCTTGAATTTGCTGCTTAATGATGATGACAATGATGTTAATAATGGTGAAACAAAGCAAGAACTTGATGCTCCTCTTAGCAACTACTCAAGAATGGCCATGGATTCAGAATCTTGGGCATATGAATTGTTTTGA
Protein sequence

>Msa0815900

MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPNTHKPLALSNASDQTQNLPKQQLHQPLEKEQENQQPLTIDIDHKIETKIEEHNKEVEKPKTSFESPTIIEIKEKDEITITPLFDTMELMDGFCIDEVPMIEPNEIIVSNSSSSTSSSYSSNSTNFLEDLHLLDFEWPNNNNKEECNNNNMAFWDDVFISSLNLLLNDDDNDVNNGETKQELDAPLSNYSRMAMDSESWAYELF*