AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816290 MtrunA17_Chr7g0220341 60.494 243 72 4 1 223 17 255 4.01e-96 281
Msa0816290 MtrunA17_Chr5g0434891 87.662 154 10 3 74 226 1 146 1.04e-92 268
Msa0816290 MtrunA17_Chr7g0228991 57.872 235 82 3 3 223 23 254 8.67e-84 250
Msa0816290 MtrunA17_Chr5g0434911 64.220 218 70 5 6 222 18 228 2.96e-81 244
Msa0816290 MtrunA17_Chr7g0229131 67.914 187 41 4 41 226 4 172 4.81e-81 239
Msa0816290 MtrunA17_Chr5g0434931 60.000 220 83 3 3 221 29 244 9.55e-81 243
Msa0816290 MtrunA17_Chr5g0434841 62.000 200 66 4 3 198 14 207 2.53e-77 235
Msa0816290 MtrunA17_Chr8g0360111 56.250 240 71 5 1 223 17 239 4.29e-77 233
Msa0816290 MtrunA17_Chr5g0434831 64.286 182 60 2 3 180 1 181 1.54e-76 229
Msa0816290 MtrunA17_Chr7g0229101 61.272 173 50 3 41 213 4 159 2.88e-58 183
Msa0816290 MtrunA17_Chr7g0240821 58.400 125 52 0 9 133 1 125 7.59e-49 159
Msa0816290 MtrunA17_Chr4g0070641 52.143 140 65 1 9 148 12 149 1.65e-46 152
Msa0816290 MtrunA17_Chr5g0434901 72.807 114 28 1 43 156 7 117 4.77e-46 149
Msa0816290 MtrunA17_Chr4g0070611 52.143 140 65 1 9 148 12 149 6.88e-46 154
Msa0816290 MtrunA17_Chr7g0274581 61.321 106 41 0 9 114 12 117 6.04e-44 146
Msa0816290 MtrunA17_Chr3g0121241 61.165 103 40 0 9 111 42 144 2.07e-42 145
Msa0816290 MtrunA17_Chr2g0323351 53.906 128 51 1 9 128 12 139 2.75e-41 141
Msa0816290 MtrunA17_Chr7g0275911 58.095 105 44 0 14 118 17 121 3.74e-41 140
Msa0816290 MtrunA17_Chr4g0022931 61.905 105 40 0 9 113 13 117 3.95e-41 141
Msa0816290 MtrunA17_Chr4g0022911 52.344 128 61 0 9 136 13 140 4.58e-41 141
Msa0816290 MtrunA17_Chr8g0346561 57.547 106 45 0 9 114 12 117 1.50e-40 140
Msa0816290 MtrunA17_Chr1g0187761 51.240 121 59 0 9 129 12 132 2.19e-40 139
Msa0816290 MtrunA17_Chr5g0435101 59.223 103 42 0 9 111 11 113 5.93e-40 136
Msa0816290 MtrunA17_Chr4g0022901 61.165 103 40 0 9 111 13 115 6.61e-40 138
Msa0816290 MtrunA17_Chr7g0261281 52.459 122 58 0 9 130 12 133 2.05e-39 137
Msa0816290 MtrunA17_Chr4g0055981 43.976 166 86 3 8 173 54 212 2.94e-39 135
Msa0816290 MtrunA17_Chr1g0167661 55.963 109 48 0 9 117 12 120 3.25e-39 135
Msa0816290 MtrunA17_Chr1g0167691 57.282 103 44 0 9 111 12 114 3.41e-39 135
Msa0816290 MtrunA17_Chr1g0203411 55.462 119 52 1 2 120 6 123 4.76e-39 136
Msa0816290 MtrunA17_Chr3g0131121 54.237 118 52 1 11 126 14 131 1.43e-38 135
Msa0816290 MtrunA17_Chr2g0281071 54.545 110 50 0 2 111 6 115 2.13e-38 136
Msa0816290 MtrunA17_Chr8g0343831 57.547 106 45 0 9 114 8 113 2.60e-38 133
Msa0816290 MtrunA17_Chr4g0048511 54.545 110 50 0 2 111 6 115 2.66e-38 136
Msa0816290 MtrunA17_Chr4g0037141 56.311 103 45 0 11 113 14 116 2.68e-38 134
Msa0816290 MtrunA17_Chr4g0044421 57.282 103 44 0 11 113 14 116 1.18e-37 130
Msa0816290 MtrunA17_Chr7g0217221 53.211 109 51 0 9 117 12 120 1.73e-37 132
Msa0816290 MtrunA17_Chr5g0395281 56.311 103 45 0 9 111 12 114 2.03e-37 132
Msa0816290 MtrunA17_Chr7g0270891 55.660 106 47 0 9 114 12 117 2.34e-37 134
Msa0816290 MtrunA17_Chr2g0323411 57.282 103 44 0 9 111 12 114 4.43e-37 132
Msa0816290 MtrunA17_Chr3g0115821 56.311 103 45 0 9 111 12 114 4.46e-37 132
Msa0816290 MtrunA17_Chr3g0117091 39.320 206 105 5 9 206 12 205 4.59e-37 132
Msa0816290 MtrunA17_Chr3g0103281 55.263 114 50 1 2 115 6 118 6.49e-37 131
Msa0816290 MtrunA17_Chr4g0042671 58.252 103 43 0 9 111 12 114 1.16e-36 132
Msa0816290 MtrunA17_Chr1g0193801 55.660 106 47 0 9 114 12 117 1.95e-36 132
Msa0816290 MtrunA17_Chr4g0039971 55.340 103 46 0 9 111 13 115 2.49e-36 130
Msa0816290 MtrunA17_Chr6g0453471 57.282 103 44 0 9 111 12 114 4.00e-36 130
Msa0816290 MtrunA17_Chr7g0217741 57.282 103 44 0 9 111 12 114 4.51e-36 129
Msa0816290 MtrunA17_Chr5g0410961 55.238 105 47 0 9 113 12 116 5.10e-36 129
Msa0816290 MtrunA17_Chr1g0203441 52.174 115 55 0 10 124 14 128 9.66e-36 127
Msa0816290 MtrunA17_Chr1g0193371 54.717 106 48 0 9 114 12 117 1.30e-35 129
Msa0816290 MtrunA17_Chr4g0068061 51.429 105 51 0 9 113 12 116 1.54e-35 128
Msa0816290 MtrunA17_Chr5g0400821 51.695 118 55 2 9 125 12 128 1.77e-35 127
Msa0816290 MtrunA17_Chr1g0211161 53.333 105 49 0 9 113 13 117 2.41e-35 125
Msa0816290 MtrunA17_Chr4g0058631 54.369 103 47 0 9 111 12 114 2.85e-35 128
Msa0816290 MtrunA17_Chr8g0349261 53.153 111 51 1 2 111 6 116 5.08e-35 126
Msa0816290 MtrunA17_Chr3g0092401 49.138 116 59 0 9 124 13 128 6.77e-35 126
Msa0816290 MtrunA17_Chr1g0151941 38.756 209 106 8 2 189 6 213 9.29e-35 124
Msa0816290 MtrunA17_Chr8g0342541 51.376 109 53 0 5 113 8 116 1.32e-34 126
Msa0816290 MtrunA17_Chr1g0152011 48.333 120 61 1 9 127 12 131 2.29e-34 125
Msa0816290 MtrunA17_Chr7g0254411 53.333 105 49 0 9 113 12 116 2.82e-34 125
Msa0816290 MtrunA17_Chr4g0060721 53.333 105 49 0 9 113 13 117 3.06e-34 125
Msa0816290 MtrunA17_Chr8g0385321 51.456 103 50 0 11 113 14 116 4.07e-34 124
Msa0816290 MtrunA17_Chr6g0452271 50.909 110 53 1 2 111 6 114 4.99e-34 124
Msa0816290 MtrunA17_Chr8g0387421 49.091 110 56 0 5 114 8 117 5.56e-34 124
Msa0816290 MtrunA17_Chr7g0264641 50.862 116 56 1 9 123 12 127 5.57e-34 122
Msa0816290 MtrunA17_Chr2g0330041 52.336 107 51 0 5 111 8 114 6.67e-34 125
Msa0816290 MtrunA17_Chr8g0342521 49.541 109 55 0 5 113 8 116 1.40e-33 123
Msa0816290 MtrunA17_Chr3g0135311 45.736 129 69 1 9 136 12 140 1.56e-33 123
Msa0816290 MtrunA17_Chr7g0271241 57.143 98 42 0 9 106 12 109 2.79e-33 123
Msa0816290 MtrunA17_Chr6g0470971 36.530 219 121 5 10 224 15 219 3.14e-33 121
Msa0816290 MtrunA17_Chr2g0328771 50.000 106 53 0 9 114 20 125 3.20e-33 122
Msa0816290 MtrunA17_Chr4g0022891 50.000 102 51 0 9 110 12 113 3.98e-33 119
Msa0816290 MtrunA17_Chr4g0022881 45.833 120 64 1 10 129 13 131 4.33e-33 119
Msa0816290 MtrunA17_Chr3g0080861 48.624 109 56 0 8 116 36 144 4.67e-33 124
Msa0816290 MtrunA17_Chr6g0453211 54.000 100 46 0 9 108 12 111 7.36e-33 120
Msa0816290 MtrunA17_Chr1g0209661 52.830 106 50 0 9 114 27 132 8.24e-33 120
Msa0816290 MtrunA17_Chr1g0186061 50.442 113 56 0 10 122 21 133 8.42e-33 119
Msa0816290 MtrunA17_Chr1g0194951 49.524 105 53 0 9 113 12 116 1.14e-32 121
Msa0816290 MtrunA17_Chr4g0032401 50.943 106 52 0 9 114 17 122 1.16e-32 120
Msa0816290 MtrunA17_Chr3g0088461 50.000 110 55 0 5 114 18 127 2.78e-32 120
Msa0816290 MtrunA17_Chr7g0228231 46.552 116 62 0 9 124 14 129 4.53e-32 115
Msa0816290 MtrunA17_Chr1g0168661 48.696 115 59 0 8 122 20 134 4.62e-32 117
Msa0816290 MtrunA17_Chr4g0057031 52.427 103 49 0 9 111 12 114 8.86e-32 117
Msa0816290 MtrunA17_Chr4g0054391 43.137 153 82 3 2 150 6 157 8.88e-32 117
Msa0816290 MtrunA17_Chr1g0194291 42.949 156 84 3 4 156 16 169 1.19e-31 116
Msa0816290 MtrunA17_Chr4g0028311 53.153 111 50 2 2 111 6 115 1.38e-31 117
Msa0816290 MtrunA17_Chr8g0342481 50.926 108 52 1 5 111 8 115 2.45e-31 118
Msa0816290 MtrunA17_Chr3g0099131 48.113 106 55 0 9 114 41 146 4.24e-31 119
Msa0816290 MtrunA17_Chr3g0110351 51.887 106 51 0 9 114 12 117 4.59e-31 115
Msa0816290 MtrunA17_Chr5g0417821 49.541 109 55 0 3 111 1 109 4.61e-31 115
Msa0816290 MtrunA17_Chr5g0397231 48.544 103 53 0 5 107 8 110 6.27e-31 116
Msa0816290 MtrunA17_Chr2g0327351 54.000 100 45 1 9 107 12 111 8.27e-31 115
Msa0816290 MtrunA17_Chr8g0354661 47.706 109 57 0 8 116 36 144 1.48e-30 118
Msa0816290 MtrunA17_Chr2g0311221 47.664 107 55 1 2 108 8 113 1.54e-30 115
Msa0816290 MtrunA17_Chr5g0434571 50.943 106 52 0 9 114 48 153 1.59e-30 115
Msa0816290 MtrunA17_Chr2g0309911 47.619 105 55 0 9 113 11 115 1.66e-30 114
Msa0816290 MtrunA17_Chr6g0450101 49.057 106 54 0 9 114 14 119 2.84e-30 111
Msa0816290 MtrunA17_Chr1g0194301 46.491 114 61 0 4 117 28 141 3.03e-30 113
Msa0816290 MtrunA17_Chr1g0180391 49.057 106 54 0 9 114 19 124 3.17e-30 112
Msa0816290 MtrunA17_Chr6g0487491 49.580 119 50 3 2 111 6 123 3.66e-30 112
Msa0816290 MtrunA17_Chr4g0072751 52.000 100 47 1 9 107 12 111 8.17e-30 113
Msa0816290 MtrunA17_Chr7g0269831 50.476 105 52 0 9 113 12 116 1.07e-29 113
Msa0816290 MtrunA17_Chr2g0327821 40.945 127 72 1 9 135 6 129 1.21e-29 110
Msa0816290 MtrunA17_Chr7g0228891 49.057 106 54 0 9 114 12 117 1.41e-29 111
Msa0816290 MtrunA17_Chr2g0322521 48.148 108 56 0 9 116 29 136 3.19e-29 112
Msa0816290 MtrunA17_Chr1g0154031 45.794 107 58 0 9 115 76 182 3.14e-28 110
Msa0816290 MtrunA17_Chr4g0030881 41.600 125 64 2 3 120 1 123 9.61e-28 106
Msa0816290 MtrunA17_Chr4g0042611 55.952 84 36 1 2 85 6 88 1.25e-26 98.2
Msa0816290 MtrunA17_Chr5g0395221 55.844 77 34 0 9 85 12 88 1.31e-26 98.2
Msa0816290 MtrunA17_Chr1g0192411 42.718 103 59 0 9 111 12 114 4.18e-26 104
Msa0816290 MtrunA17_Chr8g0342531 40.351 114 63 1 5 113 8 121 4.33e-26 99.4
Msa0816290 MtrunA17_Chr5g0440781 43.689 103 57 1 10 111 13 115 4.46e-26 100
Msa0816290 MtrunA17_Chr4g0068921 48.148 108 56 0 4 111 19 126 1.35e-25 99.0
Msa0816290 MtrunA17_Chr2g0293911 46.218 119 63 1 9 126 24 142 1.56e-25 101
Msa0816290 MtrunA17_Chr5g0440761 43.689 103 57 1 10 111 13 115 1.57e-25 100
Msa0816290 MtrunA17_Chr2g0323321 53.086 81 38 0 9 89 11 91 1.73e-25 96.3
Msa0816290 MtrunA17_Chr5g0441141 43.689 103 57 1 10 111 13 115 2.41e-25 100
Msa0816290 MtrunA17_Chr8g0342511 52.500 80 38 0 5 84 8 87 1.10e-24 93.6
Msa0816290 MtrunA17_Chr2g0294811 50.617 81 40 0 9 89 12 92 1.82e-24 93.6
Msa0816290 MtrunA17_Chr7g0247131 54.667 75 34 0 41 115 10 84 2.23e-24 97.4
Msa0816290 MtrunA17_Chr4g0053431 44.554 101 55 1 11 111 5 104 1.26e-23 95.5
Msa0816290 MtrunA17_Chr3g0099141 46.988 83 44 0 9 91 40 122 2.58e-23 91.3
Msa0816290 MtrunA17_Chr4g0013361 42.991 107 60 1 9 114 10 116 2.64e-23 95.1
Msa0816290 MtrunA17_Chr5g0441131 38.393 112 68 1 1 111 1 112 5.33e-23 91.7
Msa0816290 MtrunA17_Chr5g0434871 76.389 72 15 1 71 142 2 71 2.43e-22 86.7
Msa0816290 MtrunA17_Chr5g0401731 42.574 101 57 1 11 111 15 114 3.98e-22 92.4
Msa0816290 MtrunA17_Chr4g0008551 38.136 118 71 2 11 127 38 154 4.45e-22 92.8
Msa0816290 MtrunA17_Chr8g0334881 35.673 171 101 4 9 173 10 177 5.35e-22 92.0
Msa0816290 MtrunA17_Chr4g0042501 40.367 109 64 1 6 114 100 207 1.00e-21 92.4
Msa0816290 MtrunA17_Chr8g0342461 48.276 87 43 2 2 87 6 91 1.20e-21 87.0
Msa0816290 MtrunA17_Chr5g0417621 42.574 101 57 1 14 114 137 236 1.44e-21 92.0
Msa0816290 MtrunA17_Chr3g0133601 44.554 101 55 1 11 111 37 136 2.90e-21 88.2
Msa0816290 MtrunA17_Chr8g0342471 47.126 87 44 2 2 87 6 91 4.87e-21 85.5
Msa0816290 MtrunA17_Chr6g0480581 41.837 98 56 1 14 111 7 103 6.41e-21 87.8
Msa0816290 MtrunA17_Chr7g0238651 39.450 109 64 1 11 117 7 115 9.20e-21 89.4
Msa0816290 MtrunA17_Chr5g0429661 32.353 170 94 4 4 173 115 263 1.13e-20 89.0
Msa0816290 MtrunA17_Chr1g0157731 39.806 103 61 1 9 111 89 190 1.28e-20 90.1
Msa0816290 MtrunA17_Chr1g0157731 28.571 133 88 3 6 137 34 160 8.02e-11 61.2
Msa0816290 MtrunA17_Chr3g0139671 40.594 101 59 1 11 111 85 184 2.58e-20 89.0
Msa0816290 MtrunA17_Chr3g0125801 30.481 187 121 5 2 186 7 186 4.40e-20 86.3
Msa0816290 MtrunA17_Chr7g0254261 42.453 106 60 1 6 111 84 188 7.68e-20 86.7
Msa0816290 MtrunA17_Chr7g0238631 39.098 133 76 3 9 139 111 240 1.38e-19 86.7
Msa0816290 MtrunA17_Chr6g0460661 42.268 97 55 1 11 107 16 111 1.84e-19 82.0
Msa0816290 MtrunA17_Chr6g0454921 41.346 104 52 2 11 110 15 113 2.39e-19 82.8
Msa0816290 MtrunA17_Chr4g0058991 40.594 101 57 2 8 107 206 304 2.49e-19 85.9
Msa0816290 MtrunA17_Chr5g0425591 40.659 91 53 1 1 90 1 91 3.97e-19 79.0
Msa0816290 MtrunA17_Chr3g0117511 41.837 98 54 2 11 107 183 278 9.41e-19 84.3
Msa0816290 MtrunA17_Chr7g0228531 42.268 97 54 2 11 107 220 314 1.78e-18 83.2
Msa0816290 MtrunA17_Chr6g0460671 38.182 110 67 1 5 114 93 201 3.09e-18 82.0
Msa0816290 MtrunA17_Chr7g0228401 34.711 121 54 2 11 107 255 374 4.92e-17 79.3
Msa0816290 MtrunA17_Chr3g0093811 49.296 71 36 0 41 111 14 84 5.95e-17 77.4
Msa0816290 MtrunA17_Chr5g0397841 37.755 98 60 1 9 106 108 204 1.14e-16 78.2
Msa0816290 MtrunA17_Chr6g0453751 39.785 93 47 2 7 90 18 110 1.23e-16 73.6
Msa0816290 MtrunA17_Chr5g0437321 37.864 103 55 2 11 109 19 116 4.10e-16 75.5
Msa0816290 MtrunA17_Chr7g0228481 38.144 97 58 2 11 107 220 314 3.22e-15 73.9
Msa0816290 MtrunA17_Chr5g0416341 35.772 123 75 2 13 132 28 149 2.70e-14 71.2
Msa0816290 MtrunA17_Chr8g0362231 37.374 99 61 1 13 111 24 121 3.09e-14 70.9
Msa0816290 MtrunA17_Chr5g0434881 68.293 41 13 0 3 43 1 41 5.19e-14 64.3
Msa0816290 MtrunA17_Chr2g0322831 61.538 39 15 0 67 105 34 72 5.36e-13 62.4
Msa0816290 MtrunA17_Chr1g0177901 36.782 87 54 1 21 107 4 89 1.65e-12 64.3
Msa0816290 MtrunA17_Chr1g0193901 43.333 60 34 0 5 64 8 67 2.29e-12 61.6
Msa0816290 MtrunA17_Chr1g0193891 43.333 60 34 0 5 64 8 67 2.29e-12 61.6
Msa0816290 MtrunA17_Chr1g0193871 43.333 60 34 0 5 64 8 67 2.29e-12 61.6
Msa0816290 MtrunA17_Chr1g0193881 43.333 60 34 0 5 64 8 67 2.29e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816290 AT1G66370.1 60.274 146 55 2 4 146 3 148 5.28e-54 174
Msa0816290 AT1G56650.1 60.274 146 56 1 6 149 5 150 2.18e-48 159
Msa0816290 AT1G66380.1 71.963 107 30 0 5 111 4 110 1.90e-46 150
Msa0816290 AT1G66390.1 58.784 148 58 1 5 149 4 151 2.12e-46 154
Msa0816290 AT3G13540.1 45.455 176 86 4 9 177 23 195 8.09e-45 150
Msa0816290 AT5G14750.1 55.000 120 53 1 4 123 11 129 1.05e-41 141
Msa0816290 AT1G22640.1 59.223 103 42 0 9 111 12 114 6.78e-41 140
Msa0816290 AT5G40330.1 59.804 102 41 0 10 111 13 114 6.97e-41 139
Msa0816290 AT5G35550.1 47.260 146 72 1 9 149 14 159 3.16e-40 139
Msa0816290 AT3G27920.1 50.000 126 60 1 10 132 15 140 4.88e-40 137
Msa0816290 AT2G16720.1 49.630 135 58 1 9 133 12 146 1.03e-39 137
Msa0816290 AT4G38620.1 57.282 103 44 0 11 113 14 116 2.89e-39 137
Msa0816290 AT3G23250.1 52.500 120 54 1 9 125 12 131 4.52e-39 136
Msa0816290 AT4G09460.1 47.656 128 67 0 11 138 14 141 8.41e-39 134
Msa0816290 AT5G52600.1 48.855 131 60 1 4 134 7 130 1.15e-38 133
Msa0816290 AT4G17785.2 55.455 110 49 0 2 111 6 115 3.13e-38 136
Msa0816290 AT4G17785.1 55.455 110 49 0 2 111 6 115 3.40e-38 136
Msa0816290 AT4G05100.1 54.545 110 50 0 2 111 6 115 5.52e-38 134
Msa0816290 AT5G16770.4 56.364 110 46 1 2 111 7 114 6.48e-38 134
Msa0816290 AT5G16770.3 56.364 110 46 1 2 111 7 114 6.48e-38 134
Msa0816290 AT1G06180.1 51.724 116 56 0 9 124 12 127 7.13e-38 132
Msa0816290 AT4G01680.3 56.604 106 46 0 9 114 12 117 7.44e-38 132
Msa0816290 AT5G16770.1 56.364 110 46 1 2 111 7 114 8.80e-38 134
Msa0816290 AT5G16770.2 56.364 110 46 1 2 111 7 114 8.80e-38 134
Msa0816290 AT1G34670.1 57.273 110 45 1 2 111 7 114 1.35e-37 134
Msa0816290 AT4G34990.1 56.311 103 45 0 11 113 14 116 1.57e-37 132
Msa0816290 AT4G21440.1 57.282 103 44 0 9 111 12 114 1.62e-37 134
Msa0816290 AT4G01680.1 56.604 106 46 0 9 114 12 117 3.55e-37 133
Msa0816290 AT5G56110.1 57.018 114 48 1 2 115 6 118 4.01e-37 132
Msa0816290 AT3G61250.1 57.282 103 44 0 9 111 12 114 4.34e-37 132
Msa0816290 AT1G35515.1 53.333 105 49 0 9 113 12 116 4.81e-37 129
Msa0816290 AT5G60890.1 54.717 106 48 0 9 114 12 117 1.26e-36 130
Msa0816290 AT1G18570.1 53.636 110 51 0 2 111 6 115 1.75e-36 131
Msa0816290 AT3G02940.2 55.340 103 46 0 9 111 12 114 1.86e-36 130
Msa0816290 AT3G02940.1 55.340 103 46 0 9 111 12 114 2.45e-36 130
Msa0816290 AT3G02940.3 55.340 103 46 0 9 111 12 114 2.45e-36 130
Msa0816290 AT5G10280.1 56.311 103 45 0 9 111 12 114 2.49e-36 130
Msa0816290 AT4G28110.1 54.369 103 47 0 9 111 12 114 2.50e-36 129
Msa0816290 AT5G54230.1 56.190 105 46 0 9 113 12 116 2.58e-36 130
Msa0816290 AT5G65230.1 56.311 103 45 0 9 111 12 114 3.47e-36 129
Msa0816290 AT2G31180.1 37.500 192 112 2 9 197 12 198 3.47e-36 128
Msa0816290 AT5G49330.1 52.679 112 52 1 2 113 6 116 3.57e-36 130
Msa0816290 AT5G26660.1 54.717 106 48 0 9 114 12 117 9.05e-36 129
Msa0816290 AT3G47600.1 55.660 106 47 0 9 114 12 117 9.31e-36 129
Msa0816290 AT1G57560.1 38.421 190 113 2 9 196 12 199 9.81e-36 128
Msa0816290 AT5G07690.1 56.311 103 45 0 9 111 12 114 1.12e-35 129
Msa0816290 AT5G07700.1 57.282 103 44 0 9 111 12 114 1.21e-35 129
Msa0816290 AT5G07700.2 57.282 103 44 0 9 111 12 114 1.21e-35 129
Msa0816290 AT3G30210.1 47.761 134 65 2 10 142 28 157 1.27e-35 127
Msa0816290 AT5G61420.2 56.311 103 45 0 9 111 12 114 1.32e-35 129
Msa0816290 AT5G15310.4 55.238 105 47 0 9 113 12 116 1.62e-35 126
Msa0816290 AT1G57560.2 54.286 105 48 0 9 113 12 116 1.64e-35 127
Msa0816290 AT1G18710.1 56.311 103 45 0 9 111 12 114 1.91e-35 126
Msa0816290 AT5G15310.1 56.311 103 45 0 9 111 12 114 1.92e-35 128
Msa0816290 AT1G74080.1 53.398 103 48 0 9 111 12 114 2.17e-35 128
Msa0816290 AT3G13890.2 52.294 109 52 0 5 113 8 116 2.25e-35 129
Msa0816290 AT5G15310.2 56.311 103 45 0 9 111 12 114 2.46e-35 127
Msa0816290 AT1G74430.1 56.311 103 45 0 9 111 12 114 2.90e-35 126
Msa0816290 AT5G62470.2 52.101 119 54 1 9 127 12 127 3.30e-35 128
Msa0816290 AT3G01140.2 56.311 103 45 0 9 111 12 114 4.54e-35 127
Msa0816290 AT5G57620.1 51.282 117 56 1 9 124 12 128 7.05e-35 127
Msa0816290 AT3G01140.1 56.311 103 45 0 9 111 55 157 8.61e-35 127
Msa0816290 AT2G47460.1 50.909 110 53 1 2 111 6 114 1.03e-34 127
Msa0816290 AT3G62610.1 51.402 107 52 0 9 115 12 118 1.26e-34 126
Msa0816290 AT1G74650.1 54.545 110 49 1 2 111 6 114 1.32e-34 126
Msa0816290 AT3G28910.1 55.238 105 47 0 9 113 12 116 1.33e-34 125
Msa0816290 AT5G12870.1 51.887 106 51 0 9 114 18 123 1.58e-34 124
Msa0816290 AT5G23000.1 40.828 169 95 4 2 166 6 173 4.21e-34 124
Msa0816290 AT3G48920.1 45.528 123 67 0 3 125 12 134 5.77e-34 122
Msa0816290 AT1G16490.1 50.909 110 53 1 2 111 8 116 6.30e-34 123
Msa0816290 AT1G09540.1 50.943 106 52 0 9 114 12 117 7.50e-34 125
Msa0816290 AT4G01680.2 50.847 118 46 1 9 114 12 129 1.02e-33 124
Msa0816290 AT5G62470.1 52.101 119 53 2 9 127 12 126 1.04e-33 124
Msa0816290 AT1G08810.1 53.333 105 49 0 9 113 12 116 2.34e-33 121
Msa0816290 AT3G28470.1 52.830 106 49 1 2 107 6 110 3.23e-33 122
Msa0816290 AT3G49690.1 51.282 117 55 2 9 124 12 127 4.80e-33 121
Msa0816290 AT1G79180.1 49.091 110 55 1 2 111 8 116 5.91e-33 120
Msa0816290 AT5G65790.1 48.800 125 62 2 9 132 12 135 6.16e-33 122
Msa0816290 AT4G13480.1 50.435 115 57 0 8 122 5 119 7.49e-33 119
Msa0816290 AT1G63910.1 49.091 110 56 0 5 114 8 117 1.06e-32 122
Msa0816290 AT4G25560.1 40.385 156 78 1 10 150 11 166 1.72e-32 119
Msa0816290 AT5G55020.1 48.598 107 55 0 8 114 25 131 1.74e-32 123
Msa0816290 AT4G12350.1 53.846 104 48 0 8 111 11 114 2.39e-32 119
Msa0816290 AT3G13890.1 48.305 118 52 1 5 113 8 125 2.43e-32 120
Msa0816290 AT4G37780.1 47.788 113 58 1 8 119 11 123 3.97e-32 119
Msa0816290 AT1G25340.1 52.252 111 53 0 4 114 13 123 4.09e-32 118
Msa0816290 AT4G26930.1 41.176 136 79 1 8 142 18 153 4.15e-32 120
Msa0816290 AT3G24310.1 49.558 113 57 0 10 122 19 131 4.28e-32 118
Msa0816290 AT2G36890.1 53.774 106 48 1 9 113 12 117 5.04e-32 118
Msa0816290 AT2G36890.2 53.774 106 48 1 9 113 53 158 7.74e-32 119
Msa0816290 AT3G08500.1 50.943 106 52 0 9 114 30 135 9.72e-32 119
Msa0816290 AT3G01530.1 46.957 115 61 0 4 118 20 134 1.71e-31 114
Msa0816290 AT5G06100.1 45.536 112 61 0 5 116 28 139 2.17e-31 119
Msa0816290 AT1G56160.1 50.000 110 54 1 2 111 8 116 2.38e-31 117
Msa0816290 AT2G32460.2 46.364 110 59 0 7 116 4 113 2.64e-31 119
Msa0816290 AT2G32460.1 46.364 110 59 0 7 116 16 125 2.75e-31 120
Msa0816290 AT3G12820.1 49.091 110 55 1 2 111 8 116 2.84e-31 115
Msa0816290 AT1G48000.1 48.387 124 63 1 9 131 32 155 3.69e-31 115
Msa0816290 AT5G06100.5 45.536 112 61 0 5 116 28 139 4.59e-31 119
Msa0816290 AT5G06100.2 45.536 112 61 0 5 116 28 139 4.59e-31 119
Msa0816290 AT5G06100.3 45.536 112 61 0 5 116 28 139 4.59e-31 119
Msa0816290 AT5G06100.4 45.536 112 61 0 5 116 28 139 4.59e-31 119
Msa0816290 AT1G66380.2 67.059 85 28 0 5 89 4 88 5.31e-31 110
Msa0816290 AT3G12720.1 48.544 103 53 0 9 111 22 124 7.23e-31 115
Msa0816290 AT2G47190.1 48.113 106 55 0 9 114 20 125 1.38e-30 114
Msa0816290 AT1G66230.1 50.000 106 53 0 9 114 12 117 1.55e-30 114
Msa0816290 AT4G22680.1 52.427 103 49 0 9 111 12 114 1.61e-30 114
Msa0816290 AT3G46130.1 46.667 120 61 1 1 120 1 117 1.76e-30 113
Msa0816290 AT3G11440.2 44.954 109 60 0 8 116 40 148 2.11e-30 117
Msa0816290 AT2G26960.1 46.667 105 56 0 7 111 18 122 2.17e-30 116
Msa0816290 AT5G62320.1 41.216 148 72 3 9 144 13 157 2.23e-30 113
Msa0816290 AT5G59780.3 47.748 111 55 1 10 120 9 116 2.62e-30 112
Msa0816290 AT1G68320.1 52.830 106 50 0 9 114 19 124 2.79e-30 114
Msa0816290 AT3G53200.1 34.135 208 125 2 1 201 1 203 5.04e-30 112
Msa0816290 AT3G11440.3 44.954 109 60 0 8 116 40 148 5.38e-30 117
Msa0816290 AT3G11440.4 44.954 109 60 0 8 116 40 148 5.38e-30 117
Msa0816290 AT3G11440.1 44.954 109 60 0 8 116 40 148 5.38e-30 117
Msa0816290 AT5G52260.1 53.922 102 47 0 10 111 13 114 6.51e-30 112
Msa0816290 AT5G40350.1 37.569 181 101 4 9 185 17 189 7.64e-30 110
Msa0816290 AT5G14750.3 59.091 88 32 2 36 123 12 95 8.08e-30 109
Msa0816290 AT5G16600.1 50.943 106 52 0 9 114 12 117 2.17e-29 112
Msa0816290 AT3G27810.1 38.255 149 85 1 9 150 20 168 2.66e-29 109
Msa0816290 AT5G14340.1 48.113 106 55 0 9 114 24 129 2.85e-29 110
Msa0816290 AT1G66380.3 77.465 71 16 0 41 111 7 77 6.94e-29 105
Msa0816290 AT1G25340.2 50.450 111 50 1 4 114 13 118 9.15e-29 109
Msa0816290 AT1G25340.3 52.381 105 45 1 10 114 19 118 1.54e-28 109
Msa0816290 AT5G35550.2 47.788 113 54 1 42 149 50 162 1.03e-26 103
Msa0816290 AT1G79180.2 37.063 143 56 2 2 111 8 149 1.56e-26 104
Msa0816290 AT2G26950.1 41.000 100 59 0 7 106 14 113 1.03e-25 103
Msa0816290 AT3G06490.1 46.957 115 61 0 3 117 13 127 2.39e-25 101
Msa0816290 AT3G53200.2 35.260 173 100 2 36 201 3 170 1.25e-24 97.1
Msa0816290 AT5G26660.2 56.410 78 34 0 37 114 9 86 1.26e-24 99.4
Msa0816290 AT1G69560.2 36.496 137 81 2 14 150 126 256 1.39e-24 99.8
Msa0816290 AT1G69560.1 36.496 137 81 2 14 150 110 240 1.43e-24 99.4
Msa0816290 AT3G47600.2 63.014 73 27 0 42 114 39 111 3.42e-24 98.6
Msa0816290 AT5G49620.1 46.087 115 62 0 3 117 20 134 1.25e-23 96.7
Msa0816290 AT1G26780.1 39.024 123 72 2 8 128 95 216 3.60e-23 94.7
Msa0816290 AT1G26780.2 39.024 123 72 2 8 128 95 216 6.56e-23 95.5
Msa0816290 AT2G37630.1 39.655 116 68 1 11 124 4 119 2.15e-22 94.0
Msa0816290 AT5G11510.3 42.718 103 58 1 9 111 79 180 3.84e-22 94.7
Msa0816290 AT5G11510.1 42.718 103 58 1 9 111 79 180 3.84e-22 94.7
Msa0816290 AT5G11510.4 42.718 103 58 1 9 111 79 180 3.84e-22 94.7
Msa0816290 AT5G17800.1 38.136 118 72 1 5 122 87 203 4.35e-22 92.8
Msa0816290 AT5G11510.2 42.718 103 58 1 9 111 79 180 4.42e-22 94.7
Msa0816290 AT5G11510.5 42.718 103 58 1 9 111 79 180 5.06e-22 94.4
Msa0816290 AT4G37260.1 43.564 101 56 1 11 111 13 112 6.90e-22 92.0
Msa0816290 AT5G59780.2 53.086 81 35 1 40 120 18 95 8.31e-22 89.7
Msa0816290 AT3G55730.1 42.857 105 59 1 7 111 52 155 9.40e-22 92.8
Msa0816290 AT3G60460.1 42.056 107 61 1 9 114 11 117 1.15e-21 91.3
Msa0816290 AT3G46130.4 53.086 81 35 1 40 120 18 95 1.18e-21 89.7
Msa0816290 AT3G29020.1 33.577 137 90 1 6 142 60 195 1.30e-21 89.7
Msa0816290 AT5G67300.1 40.517 116 68 1 11 126 6 120 1.71e-21 90.9
Msa0816290 AT2G23290.1 43.564 101 56 1 11 111 13 112 2.03e-21 90.5
Msa0816290 AT3G46130.3 52.500 80 35 1 41 120 9 85 2.81e-21 88.6
Msa0816290 AT5G14750.4 57.971 69 28 1 55 123 1 68 3.02e-21 86.3
Msa0816290 AT5G14750.2 57.971 69 28 1 55 123 1 68 3.02e-21 86.3
Msa0816290 AT3G29020.2 33.577 137 90 1 6 142 62 197 3.50e-21 90.1
Msa0816290 AT1G17950.1 41.584 101 58 1 14 114 8 107 4.55e-21 88.6
Msa0816290 AT3G12820.2 55.224 67 30 0 45 111 2 68 4.82e-21 87.0
Msa0816290 AT4G18770.1 43.137 102 49 2 8 105 214 310 1.35e-20 89.7
Msa0816290 AT3G50060.1 38.211 123 71 2 11 129 6 127 1.56e-20 88.2
Msa0816290 AT2G39880.1 41.584 101 58 1 11 111 50 149 2.06e-20 88.6
Msa0816290 AT1G71030.2 56.716 67 29 0 47 113 4 70 3.02e-20 84.7
Msa0816290 AT1G71030.1 56.716 67 29 0 47 113 18 84 3.26e-20 85.1
Msa0816290 AT5G49620.2 41.085 129 62 1 3 117 20 148 4.22e-20 87.4
Msa0816290 AT3G09230.1 41.584 101 58 1 11 111 55 154 5.29e-20 87.8
Msa0816290 AT1G73410.1 43.810 105 50 2 14 114 9 108 7.98e-20 85.1
Msa0816290 AT1G73410.2 43.810 105 50 2 14 114 9 108 8.20e-20 84.3
Msa0816290 AT3G23250.2 54.054 74 31 1 55 125 1 74 1.96e-19 84.0
Msa0816290 AT3G09370.2 41.584 101 58 1 11 111 135 234 2.05e-19 86.7
Msa0816290 AT5G02320.1 40.777 103 60 1 11 113 127 228 2.06e-19 86.7
Msa0816290 AT5G02320.2 40.777 103 60 1 11 113 127 228 2.06e-19 86.7
Msa0816290 AT3G09370.1 41.584 101 58 1 11 111 130 229 2.17e-19 86.7
Msa0816290 AT3G09370.3 41.584 101 58 1 11 111 143 242 2.85e-19 86.3
Msa0816290 AT5G02320.3 40.777 103 60 1 11 113 67 168 3.20e-19 85.9
Msa0816290 AT5G02320.3 31.405 121 71 4 1 114 3 118 3.42e-11 62.8
Msa0816290 AT5G40350.2 35.135 148 84 4 42 185 5 144 7.11e-19 80.9
Msa0816290 AT3G27810.2 36.207 116 67 1 42 150 4 119 8.07e-19 80.9
Msa0816290 AT5G11050.1 35.897 117 74 1 11 127 105 220 9.62e-19 84.3
Msa0816290 AT4G33450.1 39.604 101 60 1 14 114 22 121 1.00e-18 82.4
Msa0816290 AT3G27785.1 41.071 112 64 2 11 121 189 299 1.51e-18 84.0
Msa0816290 AT1G22640.3 56.140 57 25 0 55 111 1 57 1.72e-18 80.5
Msa0816290 AT5G58850.1 34.400 125 81 1 6 130 100 223 2.03e-18 83.6
Msa0816290 AT5G39700.1 36.937 111 69 1 4 114 49 158 6.34e-18 79.0
Msa0816290 AT4G32730.1 36.893 103 64 1 9 111 85 186 8.35e-18 82.0
Msa0816290 AT4G32730.5 36.893 103 64 1 9 111 85 186 8.56e-18 82.0
Msa0816290 AT4G32730.4 36.893 103 64 1 9 111 85 186 8.56e-18 82.0
Msa0816290 AT4G32730.3 36.893 103 64 1 9 111 85 186 8.56e-18 82.0
Msa0816290 AT4G32730.2 36.893 103 64 1 9 111 85 186 8.56e-18 82.0
Msa0816290 AT5G40360.1 40.816 98 57 1 8 105 155 251 2.01e-17 80.1
Msa0816290 AT1G18960.1 40.385 104 53 3 11 111 10 107 5.74e-17 78.6
Msa0816290 AT1G14350.2 34.109 129 82 2 13 141 27 152 6.75e-15 73.6
Msa0816290 AT1G14350.1 34.109 129 82 2 13 141 27 152 6.75e-15 73.6
Msa0816290 AT2G25230.1 36.364 99 62 1 9 107 24 121 7.49e-15 71.6
Msa0816290 AT2G02820.2 36.036 111 70 1 13 123 32 141 1.41e-14 72.4
Msa0816290 AT2G02820.3 36.036 111 70 1 13 123 32 141 1.52e-14 72.0
Msa0816290 AT2G02820.1 36.036 111 70 1 13 123 32 141 1.70e-14 72.4
Msa0816290 AT4G00540.2 37.736 106 62 2 9 111 101 205 2.58e-14 71.6
Msa0816290 AT4G00540.1 37.736 106 62 2 9 111 99 203 3.01e-14 71.6
Msa0816290 AT5G40430.1 35.238 105 65 3 3 107 47 148 7.73e-14 68.9
Msa0816290 AT3G18100.4 35.354 99 63 1 7 105 381 478 2.51e-11 63.2
Msa0816290 AT3G18100.1 35.354 99 63 1 7 105 542 639 3.01e-11 63.2
Msa0816290 AT3G18100.2 35.354 99 63 1 7 105 329 426 3.29e-11 62.8
Msa0816290 AT3G18100.3 35.354 99 63 1 7 105 494 591 4.24e-11 62.4

Find 41 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGCTTCAAATAAATT+TGG 0.216237 5_3:-50540447 Msa0816290:CDS
CATACTTGGCAGGGCTAAAT+AGG 0.235642 5_3:-50540976 Msa0816290:intron
CCACATTGCACACATAATAT+TGG 0.255465 5_3:+50540324 None:intergenic
CACATTGCACACATAATATT+GGG 0.287887 5_3:+50540325 None:intergenic
GTTGATTGCTGCAAGACTTC+AGG 0.307631 5_3:-50540673 Msa0816290:CDS
ATTACAAGAGCAGAACTATA+AGG 0.315868 5_3:-50540292 Msa0816290:CDS
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5_3:-50541801 Msa0816290:CDS
TGAGCTTTAATAATTTCCTT+AGG 0.337788 5_3:+50540552 None:intergenic
CTCGAACATCCTTCTTCAAA+TGG 0.347213 5_3:+50540613 None:intergenic
ATTGGGGCATTACATAGATT+TGG 0.347306 5_3:+50540342 None:intergenic
AGAAAAGGTTTCTCTGTTGA+TGG 0.349643 5_3:+50540907 None:intergenic
AGGTTTCTCTGTTGATGGTT+GGG 0.355784 5_3:+50540912 None:intergenic
CTCATTCACCTTGGTTGAAT+GGG 0.361409 5_3:-50540494 Msa0816290:CDS
AAAGCTTATATTAACAAGTA+TGG 0.371628 5_3:-50541814 Msa0816290:CDS
ACTCATTCACCTTGGTTGAA+TGG 0.394227 5_3:-50540495 Msa0816290:CDS
GATGAGTCATCATGATATCT+AGG 0.447163 5_3:+50540417 None:intergenic
CTTAGGTTACACAACCTCCT+AGG 0.451405 5_3:-50540863 Msa0816290:CDS
ACTATGGTTCCCGATCAAAT+TGG 0.451524 5_3:-50540390 Msa0816290:CDS
TGATGACTCATCAGACACTA+TGG 0.451759 5_3:-50540406 Msa0816290:CDS
GAGCTTTAATAATTTCCTTA+GGG 0.457767 5_3:+50540553 None:intergenic
TTGATTGCTGCAAGACTTCA+GGG 0.467852 5_3:-50540672 Msa0816290:CDS
ATCAGCTTCATCCTCAGAAA+AGG 0.475951 5_3:+50540892 None:intergenic
AAGGTTTCTCTGTTGATGGT+TGG 0.484086 5_3:+50540911 None:intergenic
TACACAACCTCCTAGGGAAT+AGG 0.485517 5_3:-50540856 Msa0816290:intron
ATGAAGCTGATATGATCCTT+AGG 0.490882 5_3:-50540880 Msa0816290:CDS
TGGAAGCTTACCTATTCCCT+AGG 0.494069 5_3:+50540846 None:intergenic
TCGAACATCCTTCTTCAAAT+GGG 0.502520 5_3:+50540614 None:intergenic
CATTTAATTCCTAAAAGAGC+AGG 0.533333 5_3:-50541778 Msa0816290:intron
ACAATCTCTACCAATTTGAT+CGG 0.538699 5_3:+50540380 None:intergenic
TTGGCACACCCATTTGAAGA+AGG 0.541157 5_3:-50540622 Msa0816290:CDS
CTAGGAGGTTGTGTAACCTA+AGG 0.541369 5_3:+50540864 None:intergenic
TTAGGTTACACAACCTCCTA+GGG 0.562106 5_3:-50540862 Msa0816290:CDS
CAATCTCTACCAATTTGATC+GGG 0.564185 5_3:+50540381 None:intergenic
TATATTAACAAGTATGGTGA+AGG 0.566944 5_3:-50541808 Msa0816290:CDS
AAGCTTACCTATTCCCTAGG+AGG 0.610757 5_3:+50540849 None:intergenic
TTATGTTTCCCATTCAACCA+AGG 0.628157 5_3:+50540486 None:intergenic
AAAACGTACGTGGACATCTG+AGG 0.629051 5_3:-50541851 Msa0816290:CDS
CATTTGAAGAAGGATGTTCG+AGG 0.648298 5_3:-50540612 Msa0816290:CDS
ACATTGCACACATAATATTG+GGG 0.657462 5_3:+50540326 None:intergenic
GAGTTATGAGAAAACGTACG+TGG 0.697352 5_3:-50541861 Msa0816290:CDS
CCAATATTATGTGTGCAATG+TGG 0.711847 5_3:-50540324 Msa0816290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTAAGAAATATAAA+TGG - chr5_3:50540686-50540705 Msa0816290:intron 10.0%
!!! AAAATTAATTTCTTTTTTTC+TGG - chr5_3:50541346-50541365 Msa0816290:intron 10.0%
!!! TGTTTTTTAAGAAATATAAA+TGG - chr5_3:50540686-50540705 Msa0816290:intron 10.0%
!!! AAAATTAATTTCTTTTTTTC+TGG - chr5_3:50541346-50541365 Msa0816290:intron 10.0%
!! TTAGAAAAGAAAATTATGTA+TGG + chr5_3:50540489-50540508 None:intergenic 15.0%
!!! TATTGTGACAATATATTTTT+AGG - chr5_3:50540510-50540529 Msa0816290:CDS 15.0%
!! TGTTAATGCAATAATTTAAA+TGG + chr5_3:50540771-50540790 None:intergenic 15.0%
!!! TTTTGTGAATATAAATCAAA+AGG - chr5_3:50541051-50541070 Msa0816290:intron 15.0%
!!! TTAATTGTATTTATGGTTTT+GGG + chr5_3:50541104-50541123 None:intergenic 15.0%
!! TATGATACATATAATATAGA+TGG - chr5_3:50541457-50541476 Msa0816290:intron 15.0%
!! ATATTTGCTTCAAATAAATT+TGG - chr5_3:50541708-50541727 Msa0816290:intron 15.0%
!! TTAGAAAAGAAAATTATGTA+TGG + chr5_3:50540489-50540508 None:intergenic 15.0%
!!! TATTGTGACAATATATTTTT+AGG - chr5_3:50540510-50540529 Msa0816290:CDS 15.0%
!! TGTTAATGCAATAATTTAAA+TGG + chr5_3:50540771-50540790 None:intergenic 15.0%
!!! TTTTGTGAATATAAATCAAA+AGG - chr5_3:50541051-50541070 Msa0816290:intron 15.0%
!!! TTAATTGTATTTATGGTTTT+GGG + chr5_3:50541104-50541123 None:intergenic 15.0%
!! TATGATACATATAATATAGA+TGG - chr5_3:50541457-50541476 Msa0816290:intron 15.0%
!! ATATTTGCTTCAAATAAATT+TGG - chr5_3:50541708-50541727 Msa0816290:intron 15.0%
!! AAAGCTTATATTAACAAGTA+TGG - chr5_3:50540341-50540360 Msa0816290:CDS 20.0%
!!! ATTAATATCTTGTTTGTCTT+TGG - chr5_3:50540808-50540827 Msa0816290:intron 20.0%
!! AAACTTCAATCTAAAAGAAT+AGG + chr5_3:50540974-50540993 None:intergenic 20.0%
!! TATAAATCAAAAGGAAATCA+TGG - chr5_3:50541060-50541079 Msa0816290:intron 20.0%
!!! CTTAATTGTATTTATGGTTT+TGG + chr5_3:50541105-50541124 None:intergenic 20.0%
!! CAAAACCATAAATACAATTA+AGG - chr5_3:50541103-50541122 Msa0816290:intron 20.0%
!! CATATCCTTAATTGTATTTA+TGG + chr5_3:50541111-50541130 None:intergenic 20.0%
!!! AATTTTAATTTGGCTCTATT+TGG + chr5_3:50541332-50541351 None:intergenic 20.0%
!!! ATTAATTTCTTTTTTTCTGG+AGG - chr5_3:50541349-50541368 Msa0816290:intron 20.0%
!!! TTAATTTCTTTTTTTCTGGA+GGG - chr5_3:50541350-50541369 Msa0816290:intron 20.0%
!! AAAGCTTATATTAACAAGTA+TGG - chr5_3:50540341-50540360 Msa0816290:CDS 20.0%
!!! ATTAATATCTTGTTTGTCTT+TGG - chr5_3:50540808-50540827 Msa0816290:intron 20.0%
!! AAACTTCAATCTAAAAGAAT+AGG + chr5_3:50540974-50540993 None:intergenic 20.0%
!! TATAAATCAAAAGGAAATCA+TGG - chr5_3:50541060-50541079 Msa0816290:intron 20.0%
!!! CTTAATTGTATTTATGGTTT+TGG + chr5_3:50541105-50541124 None:intergenic 20.0%
!! CAAAACCATAAATACAATTA+AGG - chr5_3:50541103-50541122 Msa0816290:intron 20.0%
!! CATATCCTTAATTGTATTTA+TGG + chr5_3:50541111-50541130 None:intergenic 20.0%
!!! AATTTTAATTTGGCTCTATT+TGG + chr5_3:50541332-50541351 None:intergenic 20.0%
!!! ATTAATTTCTTTTTTTCTGG+AGG - chr5_3:50541349-50541368 Msa0816290:intron 20.0%
!!! TTAATTTCTTTTTTTCTGGA+GGG - chr5_3:50541350-50541369 Msa0816290:intron 20.0%
! TATATTAACAAGTATGGTGA+AGG - chr5_3:50540347-50540366 Msa0816290:CDS 25.0%
!!! AGTTGTTAGTTTGATTGTTT+TGG + chr5_3:50540555-50540574 None:intergenic 25.0%
! TGAAATTGAATCTAATTCGT+TGG + chr5_3:50540624-50540643 None:intergenic 25.0%
!! AAATGGTGAATTTTTCACTA+AGG + chr5_3:50540754-50540773 None:intergenic 25.0%
! AAATATTTGGCTAACATACT+TGG - chr5_3:50541165-50541184 Msa0816290:intron 25.0%
! CTAATGATGTGAAAAACTAT+TGG - chr5_3:50541514-50541533 Msa0816290:intron 25.0%
!! GAGCTTTAATAATTTCCTTA+GGG + chr5_3:50541605-50541624 None:intergenic 25.0%
!! TGAGCTTTAATAATTTCCTT+AGG + chr5_3:50541606-50541625 None:intergenic 25.0%
!! AGAACTATAAGGTTTTCAAA+TGG - chr5_3:50541874-50541893 Msa0816290:CDS 25.0%
! TATATTAACAAGTATGGTGA+AGG - chr5_3:50540347-50540366 Msa0816290:CDS 25.0%
!!! AGTTGTTAGTTTGATTGTTT+TGG + chr5_3:50540555-50540574 None:intergenic 25.0%
! TGAAATTGAATCTAATTCGT+TGG + chr5_3:50540624-50540643 None:intergenic 25.0%
!! AAATGGTGAATTTTTCACTA+AGG + chr5_3:50540754-50540773 None:intergenic 25.0%
! AAATATTTGGCTAACATACT+TGG - chr5_3:50541165-50541184 Msa0816290:intron 25.0%
! CTAATGATGTGAAAAACTAT+TGG - chr5_3:50541514-50541533 Msa0816290:intron 25.0%
!! GAGCTTTAATAATTTCCTTA+GGG + chr5_3:50541605-50541624 None:intergenic 25.0%
!! TGAGCTTTAATAATTTCCTT+AGG + chr5_3:50541606-50541625 None:intergenic 25.0%
!! AGAACTATAAGGTTTTCAAA+TGG - chr5_3:50541874-50541893 Msa0816290:CDS 25.0%
CATTTAATTCCTAAAAGAGC+AGG - chr5_3:50540377-50540396 Msa0816290:CDS 30.0%
! TTCATTATACCTGCTCTTTT+AGG + chr5_3:50540389-50540408 None:intergenic 30.0%
TGTTTATTCTACTGCGTATT+TGG - chr5_3:50540412-50540431 Msa0816290:CDS 30.0%
TGAAAAGTAATGAAACCACT+AGG - chr5_3:50540574-50540593 Msa0816290:CDS 30.0%
GAAAAGTAATGAAACCACTA+GGG - chr5_3:50540575-50540594 Msa0816290:CDS 30.0%
AAAAGTAATGAAACCACTAG+GGG - chr5_3:50540576-50540595 Msa0816290:CDS 30.0%
! TTGAATCTAATTCGTTGGTT+TGG + chr5_3:50540619-50540638 None:intergenic 30.0%
!! GTTGGTAGCATGAATAATAT+TGG - chr5_3:50540854-50540873 Msa0816290:intron 30.0%
GAAAGAAAAAGATAACCCTA+AGG - chr5_3:50541587-50541606 Msa0816290:intron 30.0%
! GAATGAGTTGAAAAAGTTAG+TGG + chr5_3:50541648-50541667 None:intergenic 30.0%
ACAATCTCTACCAATTTGAT+CGG + chr5_3:50541778-50541797 None:intergenic 30.0%
ACATTGCACACATAATATTG+GGG + chr5_3:50541832-50541851 None:intergenic 30.0%
CACATTGCACACATAATATT+GGG + chr5_3:50541833-50541852 None:intergenic 30.0%
ATTACAAGAGCAGAACTATA+AGG - chr5_3:50541863-50541882 Msa0816290:CDS 30.0%
CATTTAATTCCTAAAAGAGC+AGG - chr5_3:50540377-50540396 Msa0816290:CDS 30.0%
! TTCATTATACCTGCTCTTTT+AGG + chr5_3:50540389-50540408 None:intergenic 30.0%
TGTTTATTCTACTGCGTATT+TGG - chr5_3:50540412-50540431 Msa0816290:CDS 30.0%
TGAAAAGTAATGAAACCACT+AGG - chr5_3:50540574-50540593 Msa0816290:CDS 30.0%
GAAAAGTAATGAAACCACTA+GGG - chr5_3:50540575-50540594 Msa0816290:CDS 30.0%
AAAAGTAATGAAACCACTAG+GGG - chr5_3:50540576-50540595 Msa0816290:CDS 30.0%
! TTGAATCTAATTCGTTGGTT+TGG + chr5_3:50540619-50540638 None:intergenic 30.0%
!! GTTGGTAGCATGAATAATAT+TGG - chr5_3:50540854-50540873 Msa0816290:intron 30.0%
GAAAGAAAAAGATAACCCTA+AGG - chr5_3:50541587-50541606 Msa0816290:intron 30.0%
! GAATGAGTTGAAAAAGTTAG+TGG + chr5_3:50541648-50541667 None:intergenic 30.0%
ACAATCTCTACCAATTTGAT+CGG + chr5_3:50541778-50541797 None:intergenic 30.0%
ACATTGCACACATAATATTG+GGG + chr5_3:50541832-50541851 None:intergenic 30.0%
CACATTGCACACATAATATT+GGG + chr5_3:50541833-50541852 None:intergenic 30.0%
ATTACAAGAGCAGAACTATA+AGG - chr5_3:50541863-50541882 Msa0816290:CDS 30.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_3:50540354-50540373 Msa0816290:CDS 35.0%
AGAAAAGGTTTCTCTGTTGA+TGG + chr5_3:50541251-50541270 None:intergenic 35.0%
ATGAAGCTGATATGATCCTT+AGG - chr5_3:50541275-50541294 Msa0816290:intron 35.0%
TCGAACATCCTTCTTCAAAT+GGG + chr5_3:50541544-50541563 None:intergenic 35.0%
!!! CTTTTTCAACTCATTCACCT+TGG - chr5_3:50541652-50541671 Msa0816290:intron 35.0%
TTATGTTTCCCATTCAACCA+AGG + chr5_3:50541672-50541691 None:intergenic 35.0%
GATGAGTCATCATGATATCT+AGG + chr5_3:50541741-50541760 None:intergenic 35.0%
CAATCTCTACCAATTTGATC+GGG + chr5_3:50541777-50541796 None:intergenic 35.0%
! ATTGGGGCATTACATAGATT+TGG + chr5_3:50541816-50541835 None:intergenic 35.0%
CCACATTGCACACATAATAT+TGG + chr5_3:50541834-50541853 None:intergenic 35.0%
CCAATATTATGTGTGCAATG+TGG - chr5_3:50541831-50541850 Msa0816290:CDS 35.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_3:50540354-50540373 Msa0816290:CDS 35.0%
AGAAAAGGTTTCTCTGTTGA+TGG + chr5_3:50541251-50541270 None:intergenic 35.0%
ATGAAGCTGATATGATCCTT+AGG - chr5_3:50541275-50541294 Msa0816290:intron 35.0%
TCGAACATCCTTCTTCAAAT+GGG + chr5_3:50541544-50541563 None:intergenic 35.0%
!!! CTTTTTCAACTCATTCACCT+TGG - chr5_3:50541652-50541671 Msa0816290:intron 35.0%
TTATGTTTCCCATTCAACCA+AGG + chr5_3:50541672-50541691 None:intergenic 35.0%
GATGAGTCATCATGATATCT+AGG + chr5_3:50541741-50541760 None:intergenic 35.0%
CAATCTCTACCAATTTGATC+GGG + chr5_3:50541777-50541796 None:intergenic 35.0%
! ATTGGGGCATTACATAGATT+TGG + chr5_3:50541816-50541835 None:intergenic 35.0%
CCACATTGCACACATAATAT+TGG + chr5_3:50541834-50541853 None:intergenic 35.0%
CCAATATTATGTGTGCAATG+TGG - chr5_3:50541831-50541850 Msa0816290:CDS 35.0%
GAGTTATGAGAAAACGTACG+TGG - chr5_3:50540294-50540313 Msa0816290:CDS 40.0%
TAATGAAACCACTAGGGGTT+AGG - chr5_3:50540581-50540600 Msa0816290:CDS 40.0%
!!! TATGGTTTTGGGATGAATCG+TGG + chr5_3:50541093-50541112 None:intergenic 40.0%
ATTTGGCTAACATACTTGGC+AGG - chr5_3:50541169-50541188 Msa0816290:intron 40.0%
TTTGGCTAACATACTTGGCA+GGG - chr5_3:50541170-50541189 Msa0816290:intron 40.0%
GTCGAAAAAGTTGCAGATTG+AGG - chr5_3:50541203-50541222 Msa0816290:intron 40.0%
GAAAAAGTTGCAGATTGAGG+TGG - chr5_3:50541206-50541225 Msa0816290:intron 40.0%
!! AGGTTTCTCTGTTGATGGTT+GGG + chr5_3:50541246-50541265 None:intergenic 40.0%
!! AAGGTTTCTCTGTTGATGGT+TGG + chr5_3:50541247-50541266 None:intergenic 40.0%
! CAACAGAGAAACCTTTTCTG+AGG - chr5_3:50541252-50541271 Msa0816290:intron 40.0%
ATCAGCTTCATCCTCAGAAA+AGG + chr5_3:50541266-50541285 None:intergenic 40.0%
TTAGGTTACACAACCTCCTA+GGG - chr5_3:50541293-50541312 Msa0816290:intron 40.0%
TTGATTGCTGCAAGACTTCA+GGG - chr5_3:50541483-50541502 Msa0816290:intron 40.0%
CTCGAACATCCTTCTTCAAA+TGG + chr5_3:50541545-50541564 None:intergenic 40.0%
CATTTGAAGAAGGATGTTCG+AGG - chr5_3:50541543-50541562 Msa0816290:intron 40.0%
! GTTGAAAAAGTTAGTGGACG+AGG + chr5_3:50541642-50541661 None:intergenic 40.0%
ACTCATTCACCTTGGTTGAA+TGG - chr5_3:50541660-50541679 Msa0816290:intron 40.0%
CTCATTCACCTTGGTTGAAT+GGG - chr5_3:50541661-50541680 Msa0816290:intron 40.0%
TGATGACTCATCAGACACTA+TGG - chr5_3:50541749-50541768 Msa0816290:intron 40.0%
ACTATGGTTCCCGATCAAAT+TGG - chr5_3:50541765-50541784 Msa0816290:intron 40.0%
GAGTTATGAGAAAACGTACG+TGG - chr5_3:50540294-50540313 Msa0816290:CDS 40.0%
TAATGAAACCACTAGGGGTT+AGG - chr5_3:50540581-50540600 Msa0816290:CDS 40.0%
!!! TATGGTTTTGGGATGAATCG+TGG + chr5_3:50541093-50541112 None:intergenic 40.0%
ATTTGGCTAACATACTTGGC+AGG - chr5_3:50541169-50541188 Msa0816290:intron 40.0%
TTTGGCTAACATACTTGGCA+GGG - chr5_3:50541170-50541189 Msa0816290:intron 40.0%
GTCGAAAAAGTTGCAGATTG+AGG - chr5_3:50541203-50541222 Msa0816290:intron 40.0%
GAAAAAGTTGCAGATTGAGG+TGG - chr5_3:50541206-50541225 Msa0816290:intron 40.0%
!! AGGTTTCTCTGTTGATGGTT+GGG + chr5_3:50541246-50541265 None:intergenic 40.0%
!! AAGGTTTCTCTGTTGATGGT+TGG + chr5_3:50541247-50541266 None:intergenic 40.0%
! CAACAGAGAAACCTTTTCTG+AGG - chr5_3:50541252-50541271 Msa0816290:intron 40.0%
ATCAGCTTCATCCTCAGAAA+AGG + chr5_3:50541266-50541285 None:intergenic 40.0%
TTAGGTTACACAACCTCCTA+GGG - chr5_3:50541293-50541312 Msa0816290:intron 40.0%
TTGATTGCTGCAAGACTTCA+GGG - chr5_3:50541483-50541502 Msa0816290:intron 40.0%
CTCGAACATCCTTCTTCAAA+TGG + chr5_3:50541545-50541564 None:intergenic 40.0%
CATTTGAAGAAGGATGTTCG+AGG - chr5_3:50541543-50541562 Msa0816290:intron 40.0%
! GTTGAAAAAGTTAGTGGACG+AGG + chr5_3:50541642-50541661 None:intergenic 40.0%
ACTCATTCACCTTGGTTGAA+TGG - chr5_3:50541660-50541679 Msa0816290:intron 40.0%
CTCATTCACCTTGGTTGAAT+GGG - chr5_3:50541661-50541680 Msa0816290:intron 40.0%
TGATGACTCATCAGACACTA+TGG - chr5_3:50541749-50541768 Msa0816290:intron 40.0%
ACTATGGTTCCCGATCAAAT+TGG - chr5_3:50541765-50541784 Msa0816290:intron 40.0%
AAAACGTACGTGGACATCTG+AGG - chr5_3:50540304-50540323 Msa0816290:CDS 45.0%
CATACTTGGCAGGGCTAAAT+AGG - chr5_3:50541179-50541198 Msa0816290:intron 45.0%
CTAGGAGGTTGTGTAACCTA+AGG + chr5_3:50541294-50541313 None:intergenic 45.0%
CTTAGGTTACACAACCTCCT+AGG - chr5_3:50541292-50541311 Msa0816290:intron 45.0%
TACACAACCTCCTAGGGAAT+AGG - chr5_3:50541299-50541318 Msa0816290:intron 45.0%
AAGCTTACCTATTCCCTAGG+AGG + chr5_3:50541309-50541328 None:intergenic 45.0%
TGGAAGCTTACCTATTCCCT+AGG + chr5_3:50541312-50541331 None:intergenic 45.0%
GTTGATTGCTGCAAGACTTC+AGG - chr5_3:50541482-50541501 Msa0816290:intron 45.0%
TTGGCACACCCATTTGAAGA+AGG - chr5_3:50541533-50541552 Msa0816290:intron 45.0%
AAAACGTACGTGGACATCTG+AGG - chr5_3:50540304-50540323 Msa0816290:CDS 45.0%
CATACTTGGCAGGGCTAAAT+AGG - chr5_3:50541179-50541198 Msa0816290:intron 45.0%
CTAGGAGGTTGTGTAACCTA+AGG + chr5_3:50541294-50541313 None:intergenic 45.0%
CTTAGGTTACACAACCTCCT+AGG - chr5_3:50541292-50541311 Msa0816290:intron 45.0%
TACACAACCTCCTAGGGAAT+AGG - chr5_3:50541299-50541318 Msa0816290:intron 45.0%
AAGCTTACCTATTCCCTAGG+AGG + chr5_3:50541309-50541328 None:intergenic 45.0%
TGGAAGCTTACCTATTCCCT+AGG + chr5_3:50541312-50541331 None:intergenic 45.0%
GTTGATTGCTGCAAGACTTC+AGG - chr5_3:50541482-50541501 Msa0816290:intron 45.0%
TTGGCACACCCATTTGAAGA+AGG - chr5_3:50541533-50541552 Msa0816290:intron 45.0%
!! TAAAAAAAATATTTATTTGA+TGG - chr5_3:50540881-50540900 Msa0816290:CDS 5.0%
!! ATATATATTATCAAAATATT+TGG - chr5_3:50541152-50541171 Msa0816290:intron 5.0%
!!! AAAAGAAATTAATTTTAATT+TGG + chr5_3:50541342-50541361 None:intergenic 5.0%
!! TAAAAAAAATATTTATTTGA+TGG - chr5_3:50540881-50540900 Msa0816290:CDS 5.0%
!! ATATATATTATCAAAATATT+TGG - chr5_3:50541152-50541171 Msa0816290:intron 5.0%
!!! AAAAGAAATTAATTTTAATT+TGG + chr5_3:50541342-50541361 None:intergenic 5.0%
TGTTCACTCCTAACCCCTAG+TGG + chr5_3:50540592-50540611 None:intergenic 50.0%
ACCAGCTCTCTCTTCTTGAG+AGG - chr5_3:50540832-50540851 Msa0816290:intron 50.0%
ACCTCTCAAGAAGAGAGAGC+TGG + chr5_3:50540836-50540855 None:intergenic 50.0%
GCTCTCTCTTCTTGAGAGGT+TGG - chr5_3:50540836-50540855 Msa0816290:intron 50.0%
TGTTCACTCCTAACCCCTAG+TGG + chr5_3:50540592-50540611 None:intergenic 50.0%
ACCAGCTCTCTCTTCTTGAG+AGG - chr5_3:50540832-50540851 Msa0816290:intron 50.0%
ACCTCTCAAGAAGAGAGAGC+TGG + chr5_3:50540836-50540855 None:intergenic 50.0%
GCTCTCTCTTCTTGAGAGGT+TGG - chr5_3:50540836-50540855 Msa0816290:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 50540275 50541902 50540275 ID=Msa0816290;Name=Msa0816290
chr5_3 mRNA 50540275 50541902 50540275 ID=Msa0816290-mRNA-1;Parent=Msa0816290;Name=Msa0816290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|226
chr5_3 exon 50541779 50541902 50541779 ID=Msa0816290-mRNA-1:exon:15173;Parent=Msa0816290-mRNA-1
chr5_3 exon 50540857 50540986 50540857 ID=Msa0816290-mRNA-1:exon:15172;Parent=Msa0816290-mRNA-1
chr5_3 exon 50540275 50540701 50540275 ID=Msa0816290-mRNA-1:exon:15171;Parent=Msa0816290-mRNA-1
chr5_3 CDS 50541779 50541902 50541779 ID=Msa0816290-mRNA-1:cds;Parent=Msa0816290-mRNA-1
chr5_3 CDS 50540857 50540986 50540857 ID=Msa0816290-mRNA-1:cds;Parent=Msa0816290-mRNA-1
chr5_3 CDS 50540275 50540701 50540275 ID=Msa0816290-mRNA-1:cds;Parent=Msa0816290-mRNA-1
Gene Sequence

>Msa0816290

ATGTGTATGGAGAATAGCAGAGTTATGAGAAAACGTACGTGGACATCTGAGGAAGACAAGTTACTCAAAGCTTATATTAACAAGTATGGTGAAGGAAAATGGCATTTAATTCCTAAAAGAGCAGGGCTAAATAGGTGTCGAAAAAGTTGCAGATTGAGGTGGTTAAATTATTTAAACCCAACCATCAACAGAGAAACCTTTTCTGAGGATGAAGCTGATATGATCCTTAGGTTACACAACCTCCTAGGGAATAGATGGACGTTGATTGCTGCAAGACTTCAGGGTAGAACAGCTAATGATGTGAAAAACTATTGGCACACCCATTTGAAGAAGGATGTTCGAGGAGCAAAAGAAAAGAAAGAAAAGAAAGAAAAAGATAACCCTAAGGAAATTATTAAAGCTCATGAAGTTATTAAACCTCGTCCACTAACTTTTTCAACTCATTCACCTTGGTTGAATGGGAAACATAATTTTGTGACACATTCAATATTTGCTTCAAATAAATTTGGTAATGTTCCTAGATATCATGATGACTCATCAGACACTATGGTTCCCGATCAAATTGGTAGAGATTGTGCTTCTAAATCACAACCAAATCTATGTAATGCCCCAATATTATGTGTGCAATGTGGTTGCTCTTCATTACAAGAGCAGAACTATAAGGTTTTCAAATGGTTATGA
Protein sequence

>Msa0816290

MCMENSRVMRKRTWTSEEDKLLKAYINKYGEGKWHLIPKRAGLNRCRKSCRLRWLNYLNPTINRETFSEDEADMILRLHNLLGNRWTLIAARLQGRTANDVKNYWHTHLKKDVRGAKEKKEKKEKDNPKEIIKAHEVIKPRPLTFSTHSPWLNGKHNFVTHSIFASNKFGNVPRYHDDSSDTMVPDQIGRDCASKSQPNLCNAPILCVQCGCSSLQEQNYKVFKWL*