AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816320 MtrunA17_Chr7g0220341 64.729 258 68 6 1 239 19 272 1.45e-112 324
Msa0816320 MtrunA17_Chr5g0434931 64.591 257 70 5 1 239 29 282 7.59e-102 297
Msa0816320 MtrunA17_Chr7g0228991 61.868 257 73 7 1 239 23 272 1.92e-93 275
Msa0816320 MtrunA17_Chr8g0360111 62.646 257 61 6 1 239 19 258 8.75e-93 273
Msa0816320 MtrunA17_Chr5g0434911 61.479 257 74 6 4 239 18 270 8.68e-90 266
Msa0816320 MtrunA17_Chr5g0434841 51.667 300 80 9 1 236 14 312 3.39e-78 238
Msa0816320 MtrunA17_Chr5g0434831 67.403 181 44 4 1 167 1 180 9.48e-74 222
Msa0816320 MtrunA17_Chr7g0229101 54.378 217 63 6 39 236 4 203 4.41e-57 180
Msa0816320 MtrunA17_Chr5g0434901 76.786 112 16 2 41 143 7 117 4.94e-46 149
Msa0816320 MtrunA17_Chr7g0240821 54.074 135 49 2 11 136 5 135 3.79e-45 150
Msa0816320 MtrunA17_Chr7g0229131 52.381 147 51 3 39 176 4 140 2.04e-42 142
Msa0816320 MtrunA17_Chr5g0434891 53.797 158 47 6 72 219 1 142 3.17e-42 140
Msa0816320 MtrunA17_Chr4g0070611 48.201 139 63 1 6 135 11 149 2.90e-40 140
Msa0816320 MtrunA17_Chr4g0070641 48.201 139 63 1 6 135 11 149 3.33e-40 136
Msa0816320 MtrunA17_Chr4g0055981 49.612 129 55 2 6 125 54 181 8.91e-36 126
Msa0816320 MtrunA17_Chr5g0434861 60.550 109 34 2 139 239 10 117 8.96e-36 123
Msa0816320 MtrunA17_Chr4g0022931 48.092 131 59 1 2 123 8 138 2.28e-35 126
Msa0816320 MtrunA17_Chr8g0343831 57.009 107 37 1 5 102 6 112 5.32e-35 125
Msa0816320 MtrunA17_Chr4g0022911 50.000 126 50 2 2 114 8 133 1.08e-34 125
Msa0816320 MtrunA17_Chr3g0121241 51.887 106 42 1 6 102 41 146 6.67e-34 124
Msa0816320 MtrunA17_Chr4g0022901 53.211 109 42 1 2 101 8 116 1.21e-33 122
Msa0816320 MtrunA17_Chr7g0274581 49.057 106 45 1 6 102 11 116 7.55e-33 118
Msa0816320 MtrunA17_Chr7g0275911 51.887 106 42 1 6 102 11 116 7.67e-33 119
Msa0816320 MtrunA17_Chr8g0346561 46.400 125 52 2 6 115 11 135 1.07e-32 120
Msa0816320 MtrunA17_Chr5g0410961 50.833 120 49 2 6 116 11 129 1.16e-32 121
Msa0816320 MtrunA17_Chr1g0187761 46.721 122 54 2 6 116 11 132 1.38e-32 119
Msa0816320 MtrunA17_Chr1g0167691 49.533 107 45 1 5 102 10 116 1.43e-32 119
Msa0816320 MtrunA17_Chr7g0261281 48.305 118 52 1 6 114 11 128 3.75e-32 118
Msa0816320 MtrunA17_Chr1g0167661 48.598 107 46 1 5 102 10 116 1.69e-31 116
Msa0816320 MtrunA17_Chr1g0203411 50.442 113 47 1 6 109 11 123 1.80e-31 117
Msa0816320 MtrunA17_Chr2g0323351 49.153 118 51 1 6 114 11 128 2.14e-31 115
Msa0816320 MtrunA17_Chr5g0435101 51.429 105 42 1 7 102 11 115 3.04e-31 114
Msa0816320 MtrunA17_Chr4g0037141 52.427 103 40 1 9 102 14 116 7.27e-31 115
Msa0816320 MtrunA17_Chr7g0217221 51.887 106 42 1 6 102 11 116 1.47e-30 114
Msa0816320 MtrunA17_Chr3g0117091 41.026 156 66 4 5 136 10 163 1.79e-30 115
Msa0816320 MtrunA17_Chr5g0395281 49.057 106 45 1 6 102 11 116 2.01e-30 114
Msa0816320 MtrunA17_Chr4g0039971 50.000 106 44 1 6 102 12 117 2.24e-30 115
Msa0816320 MtrunA17_Chr4g0048511 50.000 106 44 1 6 102 12 117 2.92e-30 115
Msa0816320 MtrunA17_Chr6g0452271 51.429 105 42 1 7 102 12 116 5.73e-30 114
Msa0816320 MtrunA17_Chr3g0131121 43.750 128 63 1 9 127 14 141 7.18e-30 113
Msa0816320 MtrunA17_Chr2g0281071 50.000 106 44 1 6 102 12 117 1.17e-29 113
Msa0816320 MtrunA17_Chr4g0042671 50.467 107 44 1 6 103 11 117 2.27e-29 113
Msa0816320 MtrunA17_Chr3g0115821 47.170 106 47 1 6 102 11 116 2.89e-29 112
Msa0816320 MtrunA17_Chr5g0400821 47.581 124 54 3 7 120 12 134 2.97e-29 111
Msa0816320 MtrunA17_Chr1g0211161 40.000 150 63 3 5 130 11 157 3.09e-29 109
Msa0816320 MtrunA17_Chr2g0323411 50.000 106 44 1 6 102 11 116 3.63e-29 111
Msa0816320 MtrunA17_Chr4g0068061 47.170 106 47 1 6 102 11 116 3.83e-29 112
Msa0816320 MtrunA17_Chr4g0044421 37.297 185 90 5 9 183 14 182 5.89e-29 107
Msa0816320 MtrunA17_Chr1g0193801 47.664 107 47 1 5 102 10 116 6.39e-29 112
Msa0816320 MtrunA17_Chr4g0058631 41.176 153 71 4 5 139 10 161 9.84e-29 111
Msa0816320 MtrunA17_Chr7g0270891 47.664 107 47 1 5 102 10 116 1.00e-28 111
Msa0816320 MtrunA17_Chr7g0217741 48.598 107 46 1 6 103 11 117 1.10e-28 110
Msa0816320 MtrunA17_Chr6g0453471 49.533 107 45 1 6 103 11 117 1.18e-28 110
Msa0816320 MtrunA17_Chr3g0092401 50.943 106 43 1 6 102 12 117 1.26e-28 110
Msa0816320 MtrunA17_Chr7g0254411 50.000 106 44 1 6 102 11 116 1.43e-28 110
Msa0816320 MtrunA17_Chr2g0330041 47.706 109 48 1 3 102 8 116 2.07e-28 110
Msa0816320 MtrunA17_Chr1g0152011 43.077 130 63 3 7 126 12 140 2.92e-28 109
Msa0816320 MtrunA17_Chr4g0060721 44.348 115 55 1 6 111 12 126 3.17e-28 109
Msa0816320 MtrunA17_Chr4g0022881 48.077 104 45 1 6 100 11 114 3.68e-28 107
Msa0816320 MtrunA17_Chr1g0193371 47.664 107 47 1 5 102 10 116 4.43e-28 109
Msa0816320 MtrunA17_Chr8g0349261 48.649 111 47 2 2 102 8 118 5.68e-28 108
Msa0816320 MtrunA17_Chr4g0022891 41.135 141 68 3 6 131 11 151 6.62e-28 106
Msa0816320 MtrunA17_Chr3g0135311 50.943 106 42 2 7 102 12 117 6.67e-28 108
Msa0816320 MtrunA17_Chr8g0342541 44.954 109 51 1 3 102 8 116 1.12e-27 108
Msa0816320 MtrunA17_Chr8g0385321 47.573 103 45 1 9 102 14 116 1.18e-27 107
Msa0816320 MtrunA17_Chr1g0203441 45.217 115 54 1 8 113 14 128 1.22e-27 106
Msa0816320 MtrunA17_Chr8g0387421 45.872 109 50 1 3 102 8 116 1.35e-27 107
Msa0816320 MtrunA17_Chr3g0103281 46.226 106 48 1 7 103 12 117 1.59e-27 107
Msa0816320 MtrunA17_Chr1g0151941 47.170 106 46 2 7 102 12 117 3.37e-27 105
Msa0816320 MtrunA17_Chr1g0192411 46.847 111 50 1 3 104 8 118 3.39e-27 107
Msa0816320 MtrunA17_Chr1g0209661 44.828 116 52 2 7 110 27 142 4.49e-27 105
Msa0816320 MtrunA17_Chr7g0228231 43.966 116 56 1 7 113 14 129 8.82e-27 102
Msa0816320 MtrunA17_Chr8g0342521 43.119 109 53 1 3 102 8 116 8.97e-27 105
Msa0816320 MtrunA17_Chr6g0453211 51.000 100 40 1 6 96 11 110 1.05e-26 105
Msa0816320 MtrunA17_Chr3g0080861 46.667 105 47 1 6 101 36 140 1.08e-26 107
Msa0816320 MtrunA17_Chr1g0186061 49.515 103 43 1 8 101 21 123 1.09e-26 103
Msa0816320 MtrunA17_Chr5g0417821 45.045 111 52 1 1 102 1 111 1.39e-26 103
Msa0816320 MtrunA17_Chr3g0099131 45.192 104 48 1 7 101 41 144 1.52e-26 107
Msa0816320 MtrunA17_Chr1g0194951 34.615 156 88 2 6 152 11 161 1.59e-26 105
Msa0816320 MtrunA17_Chr6g0470971 34.737 190 96 4 8 187 15 186 1.69e-26 103
Msa0816320 MtrunA17_Chr1g0194291 39.333 150 77 3 2 137 16 165 1.97e-26 103
Msa0816320 MtrunA17_Chr4g0057031 48.113 106 46 1 6 102 11 116 4.94e-26 102
Msa0816320 MtrunA17_Chr4g0028311 48.598 107 45 2 6 102 11 117 5.43e-26 103
Msa0816320 MtrunA17_Chr1g0154031 48.077 104 45 1 7 101 76 179 5.56e-26 104
Msa0816320 MtrunA17_Chr2g0309911 43.925 107 51 1 5 102 9 115 7.17e-26 102
Msa0816320 MtrunA17_Chr5g0397231 46.602 103 46 1 3 96 8 110 1.04e-25 102
Msa0816320 MtrunA17_Chr2g0328771 44.762 105 49 1 7 102 20 124 1.09e-25 102
Msa0816320 MtrunA17_Chr7g0228891 40.288 139 70 3 6 131 11 149 1.13e-25 101
Msa0816320 MtrunA17_Chr4g0032401 45.714 105 48 1 7 102 17 121 2.24e-25 101
Msa0816320 MtrunA17_Chr7g0271241 49.000 100 42 1 5 95 10 109 2.49e-25 102
Msa0816320 MtrunA17_Chr6g0450101 46.667 105 47 1 7 102 14 118 2.52e-25 99.0
Msa0816320 MtrunA17_Chr8g0354661 46.154 104 47 1 7 101 37 140 4.33e-25 103
Msa0816320 MtrunA17_Chr6g0487491 46.018 113 43 2 7 101 12 124 4.53e-25 99.8
Msa0816320 MtrunA17_Chr7g0264641 48.113 106 45 2 7 102 12 117 5.26e-25 99.8
Msa0816320 MtrunA17_Chr3g0088461 45.455 110 49 3 3 102 18 126 5.70e-25 100
Msa0816320 MtrunA17_Chr8g0342481 44.545 110 51 2 3 102 8 117 6.00e-25 101
Msa0816320 MtrunA17_Chr2g0327351 51.000 100 39 2 7 96 12 111 6.36e-25 100
Msa0816320 MtrunA17_Chr1g0168661 46.602 103 46 1 8 101 22 124 6.79e-25 99.0
Msa0816320 MtrunA17_Chr3g0110351 47.170 106 47 1 6 102 11 116 9.45e-25 99.8
Msa0816320 MtrunA17_Chr4g0072751 51.000 100 39 2 7 96 12 111 1.20e-24 100
Msa0816320 MtrunA17_Chr2g0322521 46.364 110 50 1 1 101 23 132 1.91e-24 100
Msa0816320 MtrunA17_Chr1g0194301 44.037 109 52 1 2 101 28 136 1.94e-24 98.2
Msa0816320 MtrunA17_Chr2g0311221 45.455 99 45 1 7 96 14 112 2.41e-24 99.0
Msa0816320 MtrunA17_Chr1g0180391 42.342 111 55 1 7 108 19 129 3.38e-24 96.7
Msa0816320 MtrunA17_Chr4g0054391 41.406 128 65 2 7 124 12 139 3.68e-24 97.8
Msa0816320 MtrunA17_Chr5g0395221 52.632 76 36 0 6 81 11 86 3.94e-24 92.4
Msa0816320 MtrunA17_Chr5g0434571 46.226 106 48 1 6 102 47 152 4.18e-24 98.6
Msa0816320 MtrunA17_Chr2g0327821 41.346 104 52 1 7 101 6 109 1.86e-23 94.7
Msa0816320 MtrunA17_Chr7g0269831 32.995 197 111 4 6 183 11 205 4.07e-23 95.9
Msa0816320 MtrunA17_Chr5g0440781 41.346 104 51 1 7 100 12 115 7.28e-23 92.0
Msa0816320 MtrunA17_Chr4g0042611 53.333 75 35 0 7 81 12 86 9.96e-23 88.6
Msa0816320 MtrunA17_Chr5g0440761 41.346 104 51 1 7 100 12 115 3.31e-22 92.0
Msa0816320 MtrunA17_Chr5g0441141 43.636 110 49 3 7 106 12 118 3.59e-22 92.0
Msa0816320 MtrunA17_Chr8g0342511 49.367 79 40 0 3 81 8 86 5.51e-22 87.0
Msa0816320 MtrunA17_Chr2g0323321 50.000 76 38 0 6 81 10 85 6.58e-22 87.4
Msa0816320 MtrunA17_Chr2g0294811 48.684 76 39 0 6 81 11 86 1.23e-21 86.7
Msa0816320 MtrunA17_Chr4g0030881 38.261 115 55 2 8 106 8 122 2.45e-21 89.7
Msa0816320 MtrunA17_Chr8g0342531 48.101 79 41 0 3 81 8 86 2.48e-21 87.4
Msa0816320 MtrunA17_Chr4g0068921 45.631 103 47 1 7 100 24 126 2.69e-21 87.8
Msa0816320 MtrunA17_Chr2g0293911 44.444 108 51 1 2 100 19 126 3.73e-21 90.1
Msa0816320 MtrunA17_Chr1g0157731 42.718 103 49 2 9 102 91 192 2.53e-20 89.7
Msa0816320 MtrunA17_Chr5g0441131 38.462 104 54 1 7 100 9 112 6.18e-20 84.0
Msa0816320 MtrunA17_Chr5g0434881 82.927 41 7 0 1 41 1 41 6.42e-20 80.1
Msa0816320 MtrunA17_Chr3g0139671 41.748 103 50 2 9 102 85 186 1.11e-19 87.8
Msa0816320 MtrunA17_Chr3g0099141 46.667 75 40 0 7 81 40 114 3.97e-19 80.9
Msa0816320 MtrunA17_Chr4g0008551 38.235 102 53 2 9 101 38 138 1.29e-18 83.6
Msa0816320 MtrunA17_Chr7g0247131 50.685 73 27 1 39 102 10 82 2.35e-18 81.6
Msa0816320 MtrunA17_Chr8g0342461 48.684 76 38 1 7 81 12 87 2.61e-18 78.6
Msa0816320 MtrunA17_Chr8g0334881 42.991 107 50 3 7 103 10 115 4.54e-18 81.6
Msa0816320 MtrunA17_Chr4g0053431 37.500 104 55 2 9 103 5 107 8.22e-18 80.1
Msa0816320 MtrunA17_Chr8g0342471 47.368 76 39 1 7 81 12 87 1.09e-17 77.0
Msa0816320 MtrunA17_Chr5g0429661 31.361 169 87 5 9 168 122 270 1.56e-17 80.5
Msa0816320 MtrunA17_Chr5g0401731 37.255 102 54 2 9 101 15 115 2.88e-17 79.3
Msa0816320 MtrunA17_Chr7g0238631 39.806 103 52 2 9 102 113 214 4.61e-17 79.7
Msa0816320 MtrunA17_Chr5g0417621 37.255 102 54 2 9 101 134 234 5.50e-17 79.3
Msa0816320 MtrunA17_Chr5g0425591 42.667 75 43 0 7 81 9 83 7.28e-17 73.6
Msa0816320 MtrunA17_Chr4g0013361 39.623 106 53 3 7 102 10 114 1.16e-16 77.4
Msa0816320 MtrunA17_Chr4g0058991 38.318 107 54 3 7 103 207 311 1.16e-16 78.6
Msa0816320 MtrunA17_Chr3g0117511 37.190 121 61 4 9 119 183 298 1.33e-16 78.2
Msa0816320 MtrunA17_Chr7g0228531 40.385 104 51 3 7 101 218 319 2.55e-16 77.4
Msa0816320 MtrunA17_Chr4g0042501 35.294 102 56 2 9 101 105 205 3.10e-16 77.0
Msa0816320 MtrunA17_Chr3g0133601 38.235 102 53 2 9 101 37 137 3.83e-16 74.7
Msa0816320 MtrunA17_Chr5g0434871 71.429 70 11 1 69 129 2 71 4.84e-16 70.5
Msa0816320 MtrunA17_Chr6g0480581 38.144 97 50 2 9 96 4 99 7.17e-16 74.3
Msa0816320 MtrunA17_Chr7g0238651 42.708 96 44 2 12 96 10 105 8.11e-16 75.5
Msa0816320 MtrunA17_Chr6g0460661 36.522 115 61 3 9 112 16 129 1.30e-15 72.0
Msa0816320 MtrunA17_Chr6g0454921 36.111 108 51 3 9 103 15 117 1.95e-15 72.4
Msa0816320 MtrunA17_Chr7g0254261 39.216 102 52 2 9 101 89 189 2.29e-15 74.3
Msa0816320 MtrunA17_Chr3g0125801 33.051 118 66 3 2 110 9 122 5.70e-15 72.8
Msa0816320 MtrunA17_Chr6g0453751 38.824 85 44 1 5 81 18 102 1.91e-14 68.2
Msa0816320 MtrunA17_Chr6g0460671 33.333 108 62 2 3 101 93 199 5.32e-14 70.5
Msa0816320 MtrunA17_Chr5g0437321 35.922 103 48 3 9 98 19 116 1.67e-12 65.5
Msa0816320 MtrunA17_Chr3g0093811 43.243 74 33 1 39 103 14 87 2.40e-12 65.1
Msa0816320 MtrunA17_Chr5g0397841 35.417 96 52 2 9 95 110 204 1.28e-11 63.5
Msa0816320 MtrunA17_Chr7g0228481 35.294 102 55 3 7 99 218 317 1.70e-11 63.2
Msa0816320 MtrunA17_Chr1g0193901 43.548 62 34 1 2 62 6 67 2.72e-11 58.9
Msa0816320 MtrunA17_Chr1g0193891 43.548 62 34 1 2 62 6 67 2.72e-11 58.9
Msa0816320 MtrunA17_Chr1g0193871 43.548 62 34 1 2 62 6 67 2.72e-11 58.9
Msa0816320 MtrunA17_Chr1g0193881 43.548 62 34 1 2 62 6 67 2.72e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816320 AT1G66370.1 46.409 181 69 3 5 157 6 186 1.09e-46 155
Msa0816320 AT1G56650.1 52.740 146 56 2 4 136 5 150 3.30e-41 141
Msa0816320 AT1G66390.1 55.102 147 52 2 4 136 5 151 2.93e-40 139
Msa0816320 AT1G66380.1 64.815 108 29 1 3 101 4 111 4.99e-39 132
Msa0816320 AT3G13540.1 48.031 127 56 2 6 123 22 147 2.70e-36 129
Msa0816320 AT5G14750.1 40.625 160 82 2 8 158 17 172 1.56e-34 123
Msa0816320 AT5G40330.1 52.830 106 41 1 8 104 13 118 2.18e-34 123
Msa0816320 AT5G35550.1 55.238 105 38 1 7 102 14 118 6.30e-34 123
Msa0816320 AT3G27920.1 53.333 105 40 1 8 103 15 119 3.33e-33 120
Msa0816320 AT5G16770.4 53.774 106 40 1 6 102 11 116 2.07e-32 120
Msa0816320 AT5G16770.3 53.774 106 40 1 6 102 11 116 2.07e-32 120
Msa0816320 AT5G16770.1 53.774 106 40 1 6 102 11 116 2.60e-32 120
Msa0816320 AT5G16770.2 53.774 106 40 1 6 102 11 116 2.60e-32 120
Msa0816320 AT1G22640.1 53.398 103 39 1 9 102 14 116 3.16e-32 118
Msa0816320 AT3G30210.1 36.792 212 106 7 6 199 26 227 5.39e-32 118
Msa0816320 AT1G18570.1 52.830 106 41 1 6 102 12 117 6.09e-32 120
Msa0816320 AT4G17785.2 50.909 110 45 1 2 102 8 117 8.50e-32 119
Msa0816320 AT4G17785.1 50.909 110 45 1 2 102 8 117 9.33e-32 119
Msa0816320 AT4G38620.1 53.398 103 39 1 9 102 14 116 1.02e-31 117
Msa0816320 AT5G60890.1 51.887 106 42 1 6 102 11 116 1.12e-31 118
Msa0816320 AT3G23250.1 45.968 124 53 2 6 120 11 129 1.84e-31 117
Msa0816320 AT3G48920.1 44.715 123 59 1 1 114 12 134 2.91e-31 116
Msa0816320 AT3G02940.2 51.887 106 42 1 6 102 11 116 2.96e-31 117
Msa0816320 AT3G02940.1 51.887 106 42 1 6 102 11 116 3.97e-31 117
Msa0816320 AT3G02940.3 51.887 106 42 1 6 102 11 116 3.97e-31 117
Msa0816320 AT2G16720.1 51.456 103 41 1 9 102 14 116 1.99e-30 114
Msa0816320 AT5G52600.1 51.923 104 41 1 7 101 12 115 2.42e-30 112
Msa0816320 AT1G66380.2 68.116 69 22 0 3 71 4 72 2.48e-30 109
Msa0816320 AT4G09460.1 51.456 103 41 1 9 102 14 116 2.55e-30 113
Msa0816320 AT3G61250.1 50.943 106 43 1 6 102 11 116 3.02e-30 114
Msa0816320 AT3G13890.2 48.624 109 47 1 3 102 8 116 5.28e-30 115
Msa0816320 AT5G61420.2 50.943 106 43 1 6 102 11 116 5.45e-30 115
Msa0816320 AT5G54230.1 50.476 105 43 1 7 102 12 116 8.71e-30 113
Msa0816320 AT4G01680.3 49.533 107 45 1 7 104 12 118 8.81e-30 111
Msa0816320 AT5G07700.1 50.943 106 43 1 6 102 11 116 9.77e-30 114
Msa0816320 AT5G07700.2 50.943 106 43 1 6 102 11 116 9.77e-30 114
Msa0816320 AT4G34990.1 51.456 103 41 1 9 102 14 116 1.02e-29 112
Msa0816320 AT1G74430.1 49.091 110 47 1 3 103 8 117 1.16e-29 112
Msa0816320 AT1G06180.1 45.299 117 55 1 6 113 11 127 1.64e-29 111
Msa0816320 AT2G31180.1 49.533 107 45 1 6 103 11 117 2.29e-29 110
Msa0816320 AT4G01680.1 48.624 109 47 1 5 104 10 118 2.59e-29 112
Msa0816320 AT1G74650.1 50.459 109 45 1 7 106 12 120 2.94e-29 112
Msa0816320 AT4G05100.1 49.057 106 45 1 6 102 12 117 3.33e-29 112
Msa0816320 AT5G07690.1 50.000 106 44 1 6 102 11 116 3.46e-29 112
Msa0816320 AT3G01140.2 50.943 106 43 1 6 102 11 116 3.81e-29 112
Msa0816320 AT4G28110.1 47.664 107 47 1 6 103 11 117 4.47e-29 110
Msa0816320 AT3G47600.1 50.943 106 43 1 6 102 11 116 4.63e-29 112
Msa0816320 AT5G15310.1 49.533 107 45 1 6 103 11 117 4.91e-29 111
Msa0816320 AT5G15310.2 49.533 107 45 1 6 103 11 117 5.94e-29 111
Msa0816320 AT1G16490.1 46.296 108 49 1 7 105 14 121 5.97e-29 110
Msa0816320 AT5G15310.4 49.533 107 45 1 6 103 11 117 6.77e-29 109
Msa0816320 AT3G01140.1 50.943 106 43 1 6 102 54 159 8.55e-29 112
Msa0816320 AT3G62610.1 48.113 106 46 1 6 102 11 116 9.28e-29 111
Msa0816320 AT4G21440.1 48.113 106 46 1 6 102 11 116 1.14e-28 111
Msa0816320 AT3G28910.1 50.943 106 43 1 6 102 11 116 1.28e-28 110
Msa0816320 AT5G49330.1 46.226 106 48 1 6 102 11 116 1.53e-28 110
Msa0816320 AT4G37780.1 50.000 114 46 3 6 109 11 123 1.56e-28 110
Msa0816320 AT5G62470.2 50.000 106 44 1 6 102 11 116 1.87e-28 110
Msa0816320 AT1G74080.1 46.729 107 48 1 6 103 11 117 2.18e-28 110
Msa0816320 AT1G35515.1 46.667 105 47 1 7 102 12 116 2.20e-28 107
Msa0816320 AT1G08810.1 44.915 118 56 1 6 114 11 128 3.36e-28 108
Msa0816320 AT2G32460.1 49.057 106 45 1 5 101 16 121 4.21e-28 111
Msa0816320 AT3G01530.1 46.847 111 50 1 6 107 24 134 4.34e-28 106
Msa0816320 AT5G10280.1 46.226 106 48 1 6 102 11 116 4.43e-28 109
Msa0816320 AT2G32460.2 49.057 106 45 1 5 101 4 109 4.95e-28 111
Msa0816320 AT5G57620.1 51.887 106 41 2 7 102 12 117 5.14e-28 109
Msa0816320 AT5G56110.1 48.113 106 46 1 7 103 12 117 6.01e-28 108
Msa0816320 AT3G28470.1 49.495 99 41 1 7 96 12 110 1.02e-27 108
Msa0816320 AT5G26660.1 46.729 107 48 1 5 102 10 116 1.45e-27 108
Msa0816320 AT1G18710.1 48.598 107 46 1 6 103 11 117 2.06e-27 106
Msa0816320 AT5G65230.1 46.226 106 48 1 6 102 11 116 2.38e-27 107
Msa0816320 AT5G55020.1 48.182 110 48 1 2 102 21 130 2.79e-27 109
Msa0816320 AT3G49690.1 47.863 117 50 3 7 113 12 127 3.02e-27 106
Msa0816320 AT2G47460.1 44.340 106 50 1 6 102 11 116 3.14e-27 107
Msa0816320 AT1G79180.1 46.226 106 48 1 7 103 14 119 4.15e-27 105
Msa0816320 AT1G25340.1 33.471 242 125 8 8 227 19 246 4.29e-27 105
Msa0816320 AT3G13890.1 44.915 118 47 2 3 102 8 125 4.48e-27 107
Msa0816320 AT1G57560.2 44.860 107 50 1 5 102 10 116 4.83e-27 105
Msa0816320 AT1G57560.1 44.860 107 50 1 5 102 10 116 5.49e-27 106
Msa0816320 AT5G62470.1 50.000 106 43 2 6 102 11 115 6.56e-27 106
Msa0816320 AT5G65790.1 44.715 123 58 2 7 119 12 134 6.96e-27 107
Msa0816320 AT2G26960.1 46.847 111 48 2 5 104 18 128 9.72e-27 107
Msa0816320 AT1G48000.1 42.446 139 70 2 7 136 32 169 9.77e-27 103
Msa0816320 AT4G26930.1 48.077 104 45 1 6 100 18 121 9.98e-27 106
Msa0816320 AT5G23000.1 50.943 106 42 2 7 102 12 117 1.14e-26 105
Msa0816320 AT1G09540.1 43.925 107 51 1 5 102 10 116 1.16e-26 106
Msa0816320 AT3G12720.1 45.714 105 48 1 7 102 22 126 1.37e-26 104
Msa0816320 AT1G34670.1 46.226 106 48 1 6 102 11 116 1.47e-26 105
Msa0816320 AT4G25560.1 46.602 103 46 1 8 101 11 113 2.48e-26 103
Msa0816320 AT1G56160.1 46.226 106 48 1 7 103 14 119 2.58e-26 103
Msa0816320 AT2G47190.1 46.154 104 47 1 7 101 20 123 3.18e-26 103
Msa0816320 AT3G27810.1 36.913 149 76 2 7 137 20 168 3.20e-26 102
Msa0816320 AT5G12870.1 43.519 108 52 1 4 102 15 122 4.52e-26 102
Msa0816320 AT4G01680.2 43.802 121 47 2 5 104 10 130 5.65e-26 103
Msa0816320 AT5G06100.1 43.396 106 51 1 5 101 30 135 6.13e-26 105
Msa0816320 AT1G63910.1 44.037 109 52 1 3 102 8 116 7.50e-26 103
Msa0816320 AT5G06100.5 43.396 106 51 1 5 101 30 135 1.13e-25 105
Msa0816320 AT5G06100.2 43.396 106 51 1 5 101 30 135 1.13e-25 105
Msa0816320 AT5G06100.3 43.396 106 51 1 5 101 30 135 1.13e-25 105
Msa0816320 AT5G06100.4 43.396 106 51 1 5 101 30 135 1.13e-25 105
Msa0816320 AT5G40350.1 41.600 125 64 1 7 122 17 141 1.64e-25 99.8
Msa0816320 AT3G12820.1 43.697 119 51 2 1 103 1 119 2.14e-25 100
Msa0816320 AT4G13480.1 47.573 103 45 1 8 101 7 109 3.42e-25 100
Msa0816320 AT2G36890.1 50.000 106 43 2 7 102 12 117 5.07e-25 100
Msa0816320 AT3G24310.1 47.573 103 45 1 8 101 19 121 5.08e-25 100
Msa0816320 AT3G11440.2 41.905 105 52 1 6 101 40 144 6.43e-25 102
Msa0816320 AT2G36890.2 50.000 106 43 2 7 102 53 158 6.65e-25 100
Msa0816320 AT4G12350.1 46.667 105 47 1 7 102 12 116 7.14e-25 99.8
Msa0816320 AT4G22680.1 46.226 106 48 1 6 102 11 116 8.16e-25 99.4
Msa0816320 AT3G11440.3 41.905 105 52 1 6 101 40 144 1.09e-24 102
Msa0816320 AT3G11440.4 41.905 105 52 1 6 101 40 144 1.09e-24 102
Msa0816320 AT3G11440.1 41.905 105 52 1 6 101 40 144 1.09e-24 102
Msa0816320 AT1G68320.1 48.077 104 45 1 7 101 19 122 1.49e-24 99.0
Msa0816320 AT5G59780.3 41.880 117 55 2 8 115 9 121 2.22e-24 97.4
Msa0816320 AT3G08500.1 43.636 110 53 1 2 102 25 134 2.71e-24 99.4
Msa0816320 AT3G46130.1 41.026 117 56 2 8 115 10 122 5.12e-24 97.1
Msa0816320 AT5G52260.1 49.515 103 43 1 8 101 13 115 6.85e-24 97.1
Msa0816320 AT1G25340.2 32.645 242 122 9 8 227 19 241 8.72e-24 96.7
Msa0816320 AT1G25340.3 32.645 242 122 9 8 227 19 241 1.38e-23 97.1
Msa0816320 AT5G62320.1 46.018 113 45 3 6 102 12 124 1.53e-23 95.5
Msa0816320 AT1G66230.1 44.340 106 50 1 6 102 11 116 2.12e-23 95.9
Msa0816320 AT3G53200.1 42.857 105 51 1 6 101 8 112 5.96e-23 93.6
Msa0816320 AT5G16600.1 44.340 106 50 1 6 102 11 116 7.44e-23 95.1
Msa0816320 AT5G14750.3 50.575 87 31 2 34 111 12 95 2.03e-22 90.5
Msa0816320 AT5G14340.1 42.453 106 52 1 6 102 23 128 3.91e-22 92.4
Msa0816320 AT1G69560.1 34.043 141 80 3 6 137 104 240 5.67e-22 92.8
Msa0816320 AT1G69560.2 34.043 141 80 3 6 137 120 256 6.87e-22 92.8
Msa0816320 AT5G11510.3 43.689 103 48 2 9 102 81 182 4.57e-21 92.0
Msa0816320 AT5G11510.1 43.689 103 48 2 9 102 81 182 4.57e-21 92.0
Msa0816320 AT5G11510.4 43.689 103 48 2 9 102 81 182 4.57e-21 92.0
Msa0816320 AT1G79180.2 34.532 139 49 2 7 103 14 152 5.18e-21 90.1
Msa0816320 AT5G11510.2 43.689 103 48 2 9 102 81 182 7.82e-21 91.3
Msa0816320 AT5G11510.5 43.689 103 48 2 9 102 81 182 8.94e-21 91.3
Msa0816320 AT5G35550.2 54.118 85 28 2 40 113 50 134 1.50e-20 87.8
Msa0816320 AT3G06490.1 41.085 129 66 2 1 120 13 140 6.15e-20 87.0
Msa0816320 AT5G49620.1 43.089 123 60 2 7 120 26 147 8.14e-20 86.7
Msa0816320 AT5G17800.1 35.714 126 68 3 3 119 87 208 1.12e-19 86.7
Msa0816320 AT2G26950.1 38.318 107 56 2 5 102 14 119 1.33e-19 87.0
Msa0816320 AT3G09370.2 40.196 102 51 2 9 101 135 235 2.22e-18 84.0
Msa0816320 AT3G09370.1 40.196 102 51 2 9 101 130 230 2.40e-18 84.0
Msa0816320 AT3G09370.3 40.196 102 51 2 9 101 143 243 2.72e-18 84.0
Msa0816320 AT1G66380.3 62.500 72 18 1 39 101 7 78 3.08e-18 77.8
Msa0816320 AT3G09230.1 41.748 103 50 2 9 102 55 156 3.22e-18 83.2
Msa0816320 AT4G32730.5 39.806 103 52 2 9 102 87 188 7.03e-18 82.8
Msa0816320 AT4G32730.4 39.806 103 52 2 9 102 87 188 7.03e-18 82.8
Msa0816320 AT4G32730.3 39.806 103 52 2 9 102 87 188 7.03e-18 82.8
Msa0816320 AT4G32730.2 39.806 103 52 2 9 102 87 188 7.03e-18 82.8
Msa0816320 AT5G49620.2 38.686 137 60 2 7 120 26 161 7.29e-18 81.3
Msa0816320 AT4G32730.1 39.806 103 52 2 9 102 87 188 7.36e-18 82.8
Msa0816320 AT4G18770.1 40.187 107 54 2 9 106 217 322 8.69e-18 82.0
Msa0816320 AT1G26780.1 38.235 102 53 2 9 101 98 198 1.55e-17 80.1
Msa0816320 AT5G02320.1 38.095 105 55 2 9 104 127 230 1.56e-17 81.6
Msa0816320 AT5G02320.2 38.095 105 55 2 9 104 127 230 1.56e-17 81.6
Msa0816320 AT1G26780.2 38.235 102 53 2 9 101 98 198 1.75e-17 80.9
Msa0816320 AT2G37630.1 41.593 113 55 2 12 113 7 119 1.90e-17 80.9
Msa0816320 AT5G02320.3 38.095 105 55 2 9 104 67 170 2.46e-17 80.9
Msa0816320 AT4G37260.1 36.607 112 53 3 9 107 13 119 2.48e-17 80.1
Msa0816320 AT5G26660.2 47.297 74 30 1 38 102 12 85 2.79e-17 79.7
Msa0816320 AT3G47600.2 54.167 72 24 1 40 102 39 110 3.13e-17 79.7
Msa0816320 AT3G53200.2 46.753 77 32 1 34 101 3 79 4.83e-17 77.0
Msa0816320 AT4G33450.1 36.036 111 60 3 1 101 10 119 8.13e-17 77.4
Msa0816320 AT3G60460.1 40.187 107 53 3 7 103 11 116 8.22e-17 78.2
Msa0816320 AT1G17950.1 36.275 102 55 2 9 101 5 105 1.33e-16 77.0
Msa0816320 AT3G27785.1 37.391 115 62 2 6 111 186 299 1.36e-16 78.6
Msa0816320 AT2G23290.1 37.963 108 49 3 9 103 13 115 3.34e-16 76.6
Msa0816320 AT3G12820.2 48.571 70 27 1 43 103 2 71 5.30e-16 73.9
Msa0816320 AT3G55730.1 37.736 106 56 2 5 101 52 156 5.46e-16 76.6
Msa0816320 AT5G59780.2 43.678 87 36 2 38 115 18 100 5.52e-16 74.7
Msa0816320 AT3G46130.4 43.678 87 36 2 38 115 18 100 7.50e-16 74.7
Msa0816320 AT3G27810.2 34.483 116 58 2 40 137 4 119 9.53e-16 73.2
Msa0816320 AT3G46130.3 43.023 86 36 2 39 115 9 90 1.67e-15 73.6
Msa0816320 AT5G58850.1 33.333 111 64 2 9 110 105 214 1.95e-15 75.1
Msa0816320 AT2G39880.1 37.255 102 54 2 9 101 50 150 3.45e-15 74.3
Msa0816320 AT5G67300.1 36.275 102 55 2 9 101 6 106 1.18e-14 72.4
Msa0816320 AT1G73410.1 37.736 106 48 3 9 101 6 106 1.29e-14 71.2
Msa0816320 AT5G11050.1 28.889 135 86 2 7 132 103 236 1.66e-14 72.4
Msa0816320 AT3G50060.1 31.452 124 69 3 9 117 6 128 1.70e-14 71.6
Msa0816320 AT3G29020.1 28.261 138 85 4 4 129 60 195 1.71e-14 70.9
Msa0816320 AT5G40350.2 39.130 92 47 1 40 122 5 96 1.84e-14 69.3
Msa0816320 AT3G29020.2 33.028 109 61 3 4 102 62 168 2.12e-14 71.6
Msa0816320 AT5G14750.4 48.529 68 26 1 53 111 1 68 2.38e-14 68.6
Msa0816320 AT5G14750.2 48.529 68 26 1 53 111 1 68 2.38e-14 68.6
Msa0816320 AT1G73410.2 37.736 106 48 3 9 101 6 106 2.68e-14 69.7
Msa0816320 AT5G40360.1 36.893 103 55 2 7 100 156 257 8.67e-14 70.1
Msa0816320 AT1G18960.1 36.449 107 50 4 9 103 10 110 4.59e-13 67.8
Msa0816320 AT4G00540.2 36.283 113 51 4 6 102 100 207 1.14e-12 67.0
Msa0816320 AT2G25230.1 36.893 103 55 2 7 100 24 125 1.24e-12 65.9
Msa0816320 AT4G00540.1 36.283 113 51 4 6 102 98 205 1.39e-12 67.0
Msa0816320 AT3G23250.2 44.156 77 29 2 53 120 1 72 2.88e-12 64.7
Msa0816320 AT5G39700.1 35.714 98 53 2 8 96 55 151 3.23e-12 63.9
Msa0816320 AT1G71030.2 42.647 68 30 1 45 103 4 71 1.54e-11 61.6
Msa0816320 AT5G40430.1 35.922 103 55 3 7 100 52 152 1.87e-11 62.8
Msa0816320 AT1G71030.1 42.647 68 30 1 45 103 18 85 1.88e-11 61.6

Find 42 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCATTGATTACTCATTT+TGG 0.099248 5_3:-50603738 Msa0816320:CDS
ATACTTTCTTTGTTGATATT+GGG 0.161564 5_3:+50604370 None:intergenic
GATACTTTCTTTGTTGATAT+TGG 0.225213 5_3:+50604369 None:intergenic
ATAAGGTTACACAAACTTCT+AGG 0.274668 5_3:-50604322 Msa0816320:CDS
TAATGCCTCATTAGGTACTA+TGG 0.298311 5_3:-50603911 Msa0816320:CDS
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5_3:-50604699 Msa0816320:CDS
ACTATGGTTTCAAATCAAAT+TGG 0.342867 5_3:-50603895 Msa0816320:CDS
TAATGAGGCATTAGAATCTC+TGG 0.345408 5_3:+50603921 None:intergenic
TTGATTGCTGCAAGGCTTCC+CGG 0.354776 5_3:-50604174 Msa0816320:intron
CACATCATTCGCTGTTCTAC+CGG 0.355005 5_3:+50604155 None:intergenic
ACAAGAGGAGTACTTTAGTA+TGG 0.358574 5_3:-50603767 Msa0816320:CDS
AAAGCTTGCATTAACAAGTA+TGG 0.379980 5_3:-50604712 Msa0816320:CDS
AGAGATTCTAATGCCTCATT+AGG 0.396204 5_3:-50603919 Msa0816320:CDS
CCAGTAGGCAGTGAGAAAAT+TGG 0.402551 5_3:-50603805 Msa0816320:CDS
GACGGATAATTTGTGGAACT+TGG 0.414711 5_3:-50603833 Msa0816320:CDS
GGCACACAAATTTGCGGAAG+AGG 0.430316 5_3:-50604122 Msa0816320:CDS
TACTTTCTTTGTTGATATTG+GGG 0.449430 5_3:+50604371 None:intergenic
TACACTTGGCAGGATTGAAT+AGG 0.455814 5_3:-50604435 Msa0816320:intron
ACGGATAATTTGTGGAACTT+GGG 0.474895 5_3:-50603832 Msa0816320:CDS
TCTTTATTTGAAGCCAGTAC+TGG 0.482975 5_3:+50603955 None:intergenic
ACAACCATGTGCAATGTTGA+CGG 0.497078 5_3:-50603851 Msa0816320:CDS
ATGAAGCTGATATGATCATA+AGG 0.505340 5_3:-50604339 Msa0816320:CDS
ATCCCAAAATGAGTAATCAA+TGG 0.513673 5_3:+50603735 None:intergenic
CATTTAGTTCCACAGAGAGC+AGG 0.524854 5_3:-50604676 Msa0816320:intron
CGGATAATTTGTGGAACTTG+GGG 0.528180 5_3:-50603831 Msa0816320:CDS
AAAAGGTGCATGGACATATG+AGG 0.529512 5_3:-50604749 Msa0816320:CDS
ACTATTGGCACACAAATTTG+CGG 0.532907 5_3:-50604128 Msa0816320:CDS
CAATGTTGACGGATAATTTG+TGG 0.540228 5_3:-50603840 Msa0816320:CDS
GTACTGGCTTCAAATAAAGA+TGG 0.549455 5_3:-50603952 Msa0816320:CDS
TGCATTAACAAGTATGGTGA+AGG 0.551637 5_3:-50604706 Msa0816320:CDS
AATACGAGAGCAGTGAGAAA+AGG 0.558712 5_3:-50604766 Msa0816320:CDS
ACATCATTCGCTGTTCTACC+GGG 0.568549 5_3:+50604156 None:intergenic
TGAAACCATAGTACCTAATG+AGG 0.571006 5_3:+50603906 None:intergenic
TAAGGTTACACAAACTTCTA+GGG 0.580160 5_3:-50604321 Msa0816320:intron
AATGAGGCATTAGAATCTCT+GGG 0.582303 5_3:+50603922 None:intergenic
GATCATATCAGCTTCATCCT+CGG 0.598570 5_3:+50604345 None:intergenic
GAGCAGTGAGAAAAGGTGCA+TGG 0.610301 5_3:-50604759 Msa0816320:CDS
GGATAATTTGTGGAACTTGG+GGG 0.656424 5_3:-50603830 Msa0816320:CDS
TTATCCGTCAACATTGCACA+TGG 0.661637 5_3:+50603847 None:intergenic
TCAATAATACCTGCTCTCTG+TGG 0.681437 5_3:+50604667 None:intergenic
AAAGAGAAATGAAATCACAA+AGG 0.682062 5_3:+50603707 None:intergenic
CAACAAAGAAAGTATCACCG+AGG 0.759467 5_3:-50604362 Msa0816320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTATATATTGTGTATT+TGG - chr5_3:50603841-50603860 Msa0816320:CDS 15.0%
!! TATTCTATATATTGTGTATT+TGG - chr5_3:50603841-50603860 Msa0816320:CDS 15.0%
!! ATACTTTCTTTGTTGATATT+GGG + chr5_3:50604110-50604129 None:intergenic 20.0%
!! ACATTTACATGTGATATAAA+TGG - chr5_3:50604277-50604296 Msa0816320:intron 20.0%
!! ATACTTTCTTTGTTGATATT+GGG + chr5_3:50604110-50604129 None:intergenic 20.0%
!! ACATTTACATGTGATATAAA+TGG - chr5_3:50604277-50604296 Msa0816320:intron 20.0%
!!! GTAAAAGTATTTGTTACACT+TGG - chr5_3:50604028-50604047 Msa0816320:CDS 25.0%
! TACTTTCTTTGTTGATATTG+GGG + chr5_3:50604109-50604128 None:intergenic 25.0%
! GATACTTTCTTTGTTGATAT+TGG + chr5_3:50604111-50604130 None:intergenic 25.0%
! ACTATGGTTTCAAATCAAAT+TGG - chr5_3:50604582-50604601 Msa0816320:intron 25.0%
!!! AACCATTGATTACTCATTTT+GGG - chr5_3:50604740-50604759 Msa0816320:CDS 25.0%
! AAAGAGAAATGAAATCACAA+AGG + chr5_3:50604773-50604792 None:intergenic 25.0%
!!! GTAAAAGTATTTGTTACACT+TGG - chr5_3:50604028-50604047 Msa0816320:CDS 25.0%
! TACTTTCTTTGTTGATATTG+GGG + chr5_3:50604109-50604128 None:intergenic 25.0%
! GATACTTTCTTTGTTGATAT+TGG + chr5_3:50604111-50604130 None:intergenic 25.0%
! ACTATGGTTTCAAATCAAAT+TGG - chr5_3:50604582-50604601 Msa0816320:intron 25.0%
!!! AACCATTGATTACTCATTTT+GGG - chr5_3:50604740-50604759 Msa0816320:CDS 25.0%
! AAAGAGAAATGAAATCACAA+AGG + chr5_3:50604773-50604792 None:intergenic 25.0%
AAAGCTTGCATTAACAAGTA+TGG - chr5_3:50603765-50603784 Msa0816320:CDS 30.0%
TGGCTTATAATTAGTTAAGC+TGG - chr5_3:50603861-50603880 Msa0816320:CDS 30.0%
! AATCAAAAAGTGCACTACTT+TGG - chr5_3:50603913-50603932 Msa0816320:CDS 30.0%
! ACCTCAATCTACAACTTTTT+CGG + chr5_3:50604070-50604089 None:intergenic 30.0%
ATGAAGCTGATATGATCATA+AGG - chr5_3:50604138-50604157 Msa0816320:CDS 30.0%
ATAAGGTTACACAAACTTCT+AGG - chr5_3:50604155-50604174 Msa0816320:CDS 30.0%
TAAGGTTACACAAACTTCTA+GGG - chr5_3:50604156-50604175 Msa0816320:CDS 30.0%
CGAATGATGTGAAAAACTAT+TGG - chr5_3:50604334-50604353 Msa0816320:CDS 30.0%
GAAAGAAAAAGAGAAACCTA+AGG - chr5_3:50604401-50604420 Msa0816320:CDS 30.0%
! TGTGTTTTCATAGTTTCCTT+AGG + chr5_3:50604420-50604439 None:intergenic 30.0%
! GAATGAGTTGAAAAAATTCG+AGG + chr5_3:50604462-50604481 None:intergenic 30.0%
!!! TTTTTTCAACTCATTCACCA+TGG - chr5_3:50604466-50604485 Msa0816320:intron 30.0%
! CTCATTTTCTTCATTACAAG+AGG - chr5_3:50604695-50604714 Msa0816320:CDS 30.0%
!! CAACCATTGATTACTCATTT+TGG - chr5_3:50604739-50604758 Msa0816320:CDS 30.0%
ATCCCAAAATGAGTAATCAA+TGG + chr5_3:50604745-50604764 None:intergenic 30.0%
AAAGCTTGCATTAACAAGTA+TGG - chr5_3:50603765-50603784 Msa0816320:CDS 30.0%
TGGCTTATAATTAGTTAAGC+TGG - chr5_3:50603861-50603880 Msa0816320:CDS 30.0%
! AATCAAAAAGTGCACTACTT+TGG - chr5_3:50603913-50603932 Msa0816320:CDS 30.0%
! ACCTCAATCTACAACTTTTT+CGG + chr5_3:50604070-50604089 None:intergenic 30.0%
ATGAAGCTGATATGATCATA+AGG - chr5_3:50604138-50604157 Msa0816320:CDS 30.0%
ATAAGGTTACACAAACTTCT+AGG - chr5_3:50604155-50604174 Msa0816320:CDS 30.0%
TAAGGTTACACAAACTTCTA+GGG - chr5_3:50604156-50604175 Msa0816320:CDS 30.0%
CGAATGATGTGAAAAACTAT+TGG - chr5_3:50604334-50604353 Msa0816320:CDS 30.0%
GAAAGAAAAAGAGAAACCTA+AGG - chr5_3:50604401-50604420 Msa0816320:CDS 30.0%
! TGTGTTTTCATAGTTTCCTT+AGG + chr5_3:50604420-50604439 None:intergenic 30.0%
! GAATGAGTTGAAAAAATTCG+AGG + chr5_3:50604462-50604481 None:intergenic 30.0%
!!! TTTTTTCAACTCATTCACCA+TGG - chr5_3:50604466-50604485 Msa0816320:intron 30.0%
! CTCATTTTCTTCATTACAAG+AGG - chr5_3:50604695-50604714 Msa0816320:CDS 30.0%
!! CAACCATTGATTACTCATTT+TGG - chr5_3:50604739-50604758 Msa0816320:CDS 30.0%
ATCCCAAAATGAGTAATCAA+TGG + chr5_3:50604745-50604764 None:intergenic 30.0%
TGCATTAACAAGTATGGTGA+AGG - chr5_3:50603771-50603790 Msa0816320:CDS 35.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_3:50603778-50603797 Msa0816320:CDS 35.0%
! AAGTATTTGTTACACTTGGC+AGG - chr5_3:50604032-50604051 Msa0816320:CDS 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - chr5_3:50604069-50604088 Msa0816320:CDS 35.0%
ACTATTGGCACACAAATTTG+CGG - chr5_3:50604349-50604368 Msa0816320:CDS 35.0%
GTTGAAAAAATTCGAGGTTG+AGG + chr5_3:50604456-50604475 None:intergenic 35.0%
! TTTTGCTTCTTATTCAGCCA+TGG + chr5_3:50604486-50604505 None:intergenic 35.0%
! TCTTTATTTGAAGCCAGTAC+TGG + chr5_3:50604525-50604544 None:intergenic 35.0%
!! GTACTGGCTTCAAATAAAGA+TGG - chr5_3:50604525-50604544 Msa0816320:intron 35.0%
! AATGAGGCATTAGAATCTCT+GGG + chr5_3:50604558-50604577 None:intergenic 35.0%
! TAATGAGGCATTAGAATCTC+TGG + chr5_3:50604559-50604578 None:intergenic 35.0%
AGAGATTCTAATGCCTCATT+AGG - chr5_3:50604558-50604577 Msa0816320:intron 35.0%
TAATGCCTCATTAGGTACTA+TGG - chr5_3:50604566-50604585 Msa0816320:intron 35.0%
TGAAACCATAGTACCTAATG+AGG + chr5_3:50604574-50604593 None:intergenic 35.0%
! CAATGTTGACGGATAATTTG+TGG - chr5_3:50604637-50604656 Msa0816320:intron 35.0%
! ACGGATAATTTGTGGAACTT+GGG - chr5_3:50604645-50604664 Msa0816320:intron 35.0%
!! ACAAGAGGAGTACTTTAGTA+TGG - chr5_3:50604710-50604729 Msa0816320:CDS 35.0%
TGCATTAACAAGTATGGTGA+AGG - chr5_3:50603771-50603790 Msa0816320:CDS 35.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_3:50603778-50603797 Msa0816320:CDS 35.0%
! AAGTATTTGTTACACTTGGC+AGG - chr5_3:50604032-50604051 Msa0816320:CDS 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - chr5_3:50604069-50604088 Msa0816320:CDS 35.0%
ACTATTGGCACACAAATTTG+CGG - chr5_3:50604349-50604368 Msa0816320:CDS 35.0%
GTTGAAAAAATTCGAGGTTG+AGG + chr5_3:50604456-50604475 None:intergenic 35.0%
! TTTTGCTTCTTATTCAGCCA+TGG + chr5_3:50604486-50604505 None:intergenic 35.0%
! TCTTTATTTGAAGCCAGTAC+TGG + chr5_3:50604525-50604544 None:intergenic 35.0%
!! GTACTGGCTTCAAATAAAGA+TGG - chr5_3:50604525-50604544 Msa0816320:intron 35.0%
! AATGAGGCATTAGAATCTCT+GGG + chr5_3:50604558-50604577 None:intergenic 35.0%
! TAATGAGGCATTAGAATCTC+TGG + chr5_3:50604559-50604578 None:intergenic 35.0%
AGAGATTCTAATGCCTCATT+AGG - chr5_3:50604558-50604577 Msa0816320:intron 35.0%
TAATGCCTCATTAGGTACTA+TGG - chr5_3:50604566-50604585 Msa0816320:intron 35.0%
TGAAACCATAGTACCTAATG+AGG + chr5_3:50604574-50604593 None:intergenic 35.0%
! CAATGTTGACGGATAATTTG+TGG - chr5_3:50604637-50604656 Msa0816320:intron 35.0%
! ACGGATAATTTGTGGAACTT+GGG - chr5_3:50604645-50604664 Msa0816320:intron 35.0%
!! ACAAGAGGAGTACTTTAGTA+TGG - chr5_3:50604710-50604729 Msa0816320:CDS 35.0%
AATACGAGAGCAGTGAGAAA+AGG - chr5_3:50603711-50603730 Msa0816320:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG - chr5_3:50603728-50603747 Msa0816320:CDS 40.0%
TCAATAATACCTGCTCTCTG+TGG + chr5_3:50603813-50603832 None:intergenic 40.0%
TACACTTGGCAGGATTGAAT+AGG - chr5_3:50604042-50604061 Msa0816320:CDS 40.0%
GCCGAAAAAGTTGTAGATTG+AGG - chr5_3:50604066-50604085 Msa0816320:CDS 40.0%
!! CAACAAAGAAAGTATCACCG+AGG - chr5_3:50604115-50604134 Msa0816320:CDS 40.0%
GATCATATCAGCTTCATCCT+CGG + chr5_3:50604135-50604154 None:intergenic 40.0%
! AATGGTCATTGATTGCTGCA+AGG - chr5_3:50604295-50604314 Msa0816320:intron 40.0%
! TTTTGTGACACAACCAGTAC+TGG - chr5_3:50604509-50604528 Msa0816320:intron 40.0%
ACAACCATGTGCAATGTTGA+CGG - chr5_3:50604626-50604645 Msa0816320:intron 40.0%
TTATCCGTCAACATTGCACA+TGG + chr5_3:50604633-50604652 None:intergenic 40.0%
! GACGGATAATTTGTGGAACT+TGG - chr5_3:50604644-50604663 Msa0816320:intron 40.0%
! CGGATAATTTGTGGAACTTG+GGG - chr5_3:50604646-50604665 Msa0816320:intron 40.0%
! GGATAATTTGTGGAACTTGG+GGG - chr5_3:50604647-50604666 Msa0816320:intron 40.0%
AATACGAGAGCAGTGAGAAA+AGG - chr5_3:50603711-50603730 Msa0816320:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG - chr5_3:50603728-50603747 Msa0816320:CDS 40.0%
TCAATAATACCTGCTCTCTG+TGG + chr5_3:50603813-50603832 None:intergenic 40.0%
TACACTTGGCAGGATTGAAT+AGG - chr5_3:50604042-50604061 Msa0816320:CDS 40.0%
GCCGAAAAAGTTGTAGATTG+AGG - chr5_3:50604066-50604085 Msa0816320:CDS 40.0%
!! CAACAAAGAAAGTATCACCG+AGG - chr5_3:50604115-50604134 Msa0816320:CDS 40.0%
GATCATATCAGCTTCATCCT+CGG + chr5_3:50604135-50604154 None:intergenic 40.0%
! AATGGTCATTGATTGCTGCA+AGG - chr5_3:50604295-50604314 Msa0816320:intron 40.0%
! TTTTGTGACACAACCAGTAC+TGG - chr5_3:50604509-50604528 Msa0816320:intron 40.0%
ACAACCATGTGCAATGTTGA+CGG - chr5_3:50604626-50604645 Msa0816320:intron 40.0%
TTATCCGTCAACATTGCACA+TGG + chr5_3:50604633-50604652 None:intergenic 40.0%
! GACGGATAATTTGTGGAACT+TGG - chr5_3:50604644-50604663 Msa0816320:intron 40.0%
! CGGATAATTTGTGGAACTTG+GGG - chr5_3:50604646-50604665 Msa0816320:intron 40.0%
! GGATAATTTGTGGAACTTGG+GGG - chr5_3:50604647-50604666 Msa0816320:intron 40.0%
! CATTTAGTTCCACAGAGAGC+AGG - chr5_3:50603801-50603820 Msa0816320:CDS 45.0%
ACATCATTCGCTGTTCTACC+GGG + chr5_3:50604324-50604343 None:intergenic 45.0%
CACATCATTCGCTGTTCTAC+CGG + chr5_3:50604325-50604344 None:intergenic 45.0%
! CCAATTTTCTCACTGCCTAC+TGG + chr5_3:50604675-50604694 None:intergenic 45.0%
CCAGTAGGCAGTGAGAAAAT+TGG - chr5_3:50604672-50604691 Msa0816320:intron 45.0%
! CATTTAGTTCCACAGAGAGC+AGG - chr5_3:50603801-50603820 Msa0816320:CDS 45.0%
ACATCATTCGCTGTTCTACC+GGG + chr5_3:50604324-50604343 None:intergenic 45.0%
CACATCATTCGCTGTTCTAC+CGG + chr5_3:50604325-50604344 None:intergenic 45.0%
! CCAATTTTCTCACTGCCTAC+TGG + chr5_3:50604675-50604694 None:intergenic 45.0%
CCAGTAGGCAGTGAGAAAAT+TGG - chr5_3:50604672-50604691 Msa0816320:intron 45.0%
! GAGCAGTGAGAAAAGGTGCA+TGG - chr5_3:50603718-50603737 Msa0816320:CDS 50.0%
TTGATTGCTGCAAGGCTTCC+CGG - chr5_3:50604303-50604322 Msa0816320:intron 50.0%
GGCACACAAATTTGCGGAAG+AGG - chr5_3:50604355-50604374 Msa0816320:CDS 50.0%
! GAGCAGTGAGAAAAGGTGCA+TGG - chr5_3:50603718-50603737 Msa0816320:CDS 50.0%
TTGATTGCTGCAAGGCTTCC+CGG - chr5_3:50604303-50604322 Msa0816320:intron 50.0%
GGCACACAAATTTGCGGAAG+AGG - chr5_3:50604355-50604374 Msa0816320:CDS 50.0%
TGGAACTTGGGGGAGCCAGT+AGG - chr5_3:50604657-50604676 Msa0816320:intron 60.0%
TGGAACTTGGGGGAGCCAGT+AGG - chr5_3:50604657-50604676 Msa0816320:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 50603705 50604794 50603705 ID=Msa0816320;Name=Msa0816320
chr5_3 mRNA 50603705 50604794 50603705 ID=Msa0816320-mRNA-1;Parent=Msa0816320;Name=Msa0816320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|239
chr5_3 exon 50604677 50604794 50604677 ID=Msa0816320-mRNA-1:exon:15196;Parent=Msa0816320-mRNA-1
chr5_3 exon 50604322 50604445 50604322 ID=Msa0816320-mRNA-1:exon:15195;Parent=Msa0816320-mRNA-1
chr5_3 exon 50603705 50604182 50603705 ID=Msa0816320-mRNA-1:exon:15194;Parent=Msa0816320-mRNA-1
chr5_3 CDS 50604677 50604794 50604677 ID=Msa0816320-mRNA-1:cds;Parent=Msa0816320-mRNA-1
chr5_3 CDS 50604322 50604445 50604322 ID=Msa0816320-mRNA-1:cds;Parent=Msa0816320-mRNA-1
chr5_3 CDS 50603705 50604182 50603705 ID=Msa0816320-mRNA-1:cds;Parent=Msa0816320-mRNA-1
Gene Sequence

>Msa0816320

ATGGATAATACGAGAGCAGTGAGAAAAGGTGCATGGACATATGAGGAAGATAAGCTACTCAAAGCTTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAGAGAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCCAATATCAACAAAGAAAGTATCACCGAGGATGAAGCTGATATGATCATAAGGTTACACAAACTTCTAGGGCTTCCCGGTAGAACAGCGAATGATGTGAAAAACTATTGGCACACAAATTTGCGGAAGAGGCTTACTTTAGAAAAAGAAGAAAAGAAAGAAAAAGAGAAACCTAAGGAAACTATGAAAACACATGAAGTTATTAAGCCTCAACCTCGAATTTTTTCAACTCATTCACCATGGCTGAATAAGAAGCAAAATAATTTTGTGACACAACCAGTACTGGCTTCAAATAAAGATGGTAATGTTCCCAGAGATTCTAATGCCTCATTAGGTACTATGGTTTCAAATCAAATTGGTAGAGATTGTGCTTCTGCTTCACAACCATGTGCAATGTTGACGGATAATTTGTGGAACTTGGGGGAGCCAGTAGGCAGTGAGAAAATTGGCTCATTTTCTTCATTACAAGAGGAGTACTTTAGTATGGAGTTTTCAACCATTGATTACTCATTTTGGGATTTCAACCTTTGTGATTTCATTTCTCTTTGA
Protein sequence

>Msa0816320

MDNTRAVRKGAWTYEEDKLLKACINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPNINKESITEDEADMIIRLHKLLGLPGRTANDVKNYWHTNLRKRLTLEKEEKKEKEKPKETMKTHEVIKPQPRIFSTHSPWLNKKQNNFVTQPVLASNKDGNVPRDSNASLGTMVSNQIGRDCASASQPCAMLTDNLWNLGEPVGSEKIGSFSSLQEEYFSMEFSTIDYSFWDFNLCDFISL*