Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816600 | XP_003598029.2 | 45.946 | 259 | 90 | 4 | 16 | 225 | 257 | 514 | 6.02e-62 | 220 |
| Msa0816600 | XP_003598029.2 | 51.724 | 232 | 89 | 2 | 217 | 448 | 2 | 210 | 2.04e-64 | 226 |
| Msa0816600 | XP_003598029.2 | 69.002 | 471 | 121 | 4 | 1 | 447 | 1 | 470 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816600 | sp|Q9XIB4|Y1475_ARATH | 38.400 | 125 | 74 | 2 | 5 | 129 | 20 | 141 | 4.69e-19 | 88.2 |
| Msa0816600 | sp|Q9XIB4|Y1475_ARATH | 36.036 | 111 | 70 | 1 | 238 | 348 | 32 | 141 | 3.56e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816600 | G7IYE8 | 45.946 | 259 | 90 | 4 | 16 | 225 | 257 | 514 | 2.87e-62 | 220 |
| Msa0816600 | G7IYE8 | 51.724 | 232 | 89 | 2 | 217 | 448 | 2 | 210 | 9.76e-65 | 226 |
| Msa0816600 | G7IYE8 | 69.002 | 471 | 121 | 4 | 1 | 447 | 1 | 470 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0816600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816600 | MtrunA17_Chr3g0077411 | 69.002 | 471 | 121 | 4 | 1 | 447 | 1 | 470 | 0.0 | 639 |
| Msa0816600 | MtrunA17_Chr3g0077411 | 51.724 | 232 | 89 | 2 | 217 | 448 | 2 | 210 | 1.88e-68 | 226 |
| Msa0816600 | MtrunA17_Chr3g0077411 | 45.946 | 259 | 90 | 4 | 16 | 225 | 257 | 514 | 5.53e-66 | 220 |
| Msa0816600 | MtrunA17_Chr3g0077361 | 60.460 | 478 | 124 | 4 | 1 | 448 | 20 | 462 | 0.0 | 526 |
| Msa0816600 | MtrunA17_Chr3g0077361 | 48.148 | 216 | 105 | 2 | 16 | 225 | 284 | 498 | 1.05e-51 | 182 |
| Msa0816600 | MtrunA17_Chr3g0077461 | 64.663 | 416 | 118 | 6 | 36 | 438 | 22 | 421 | 0.0 | 522 |
| Msa0816600 | MtrunA17_Chr3g0077461 | 48.945 | 237 | 90 | 4 | 16 | 224 | 232 | 465 | 2.23e-65 | 217 |
| Msa0816600 | MtrunA17_Chr4g0009491 | 61.860 | 430 | 135 | 3 | 35 | 445 | 11 | 430 | 0.0 | 512 |
| Msa0816600 | MtrunA17_Chr4g0009491 | 54.359 | 195 | 67 | 2 | 254 | 448 | 11 | 183 | 1.67e-57 | 195 |
| Msa0816600 | MtrunA17_Chr4g0009491 | 48.544 | 206 | 65 | 1 | 16 | 180 | 220 | 425 | 5.39e-55 | 189 |
| Msa0816600 | MtrunA17_Chr3g0077381 | 59.410 | 441 | 120 | 5 | 35 | 445 | 34 | 445 | 3.93e-168 | 480 |
| Msa0816600 | MtrunA17_Chr3g0077381 | 48.241 | 199 | 69 | 2 | 16 | 180 | 242 | 440 | 2.34e-52 | 182 |
| Msa0816600 | MtrunA17_Chr5g0429931 | 70.352 | 199 | 59 | 0 | 250 | 448 | 5 | 203 | 4.35e-95 | 286 |
| Msa0816600 | MtrunA17_Chr5g0429931 | 52.381 | 231 | 68 | 2 | 36 | 225 | 10 | 239 | 2.67e-71 | 225 |
| Msa0816600 | MtrunA17_Chr3g0077451 | 65.464 | 194 | 57 | 1 | 254 | 447 | 10 | 193 | 1.57e-85 | 261 |
| Msa0816600 | MtrunA17_Chr3g0077451 | 52.838 | 229 | 75 | 3 | 35 | 231 | 10 | 237 | 1.02e-71 | 226 |
| Msa0816600 | MtrunA17_Chr3g0077431 | 64.024 | 164 | 49 | 1 | 284 | 447 | 1 | 154 | 3.16e-68 | 216 |
| Msa0816600 | MtrunA17_Chr3g0077431 | 48.744 | 199 | 69 | 3 | 65 | 231 | 1 | 198 | 6.29e-52 | 173 |
| Msa0816600 | MtrunA17_Chr3g0077421 | 64.634 | 164 | 48 | 1 | 284 | 447 | 1 | 154 | 3.84e-68 | 216 |
| Msa0816600 | MtrunA17_Chr3g0077421 | 47.938 | 194 | 67 | 3 | 65 | 225 | 1 | 193 | 1.07e-47 | 162 |
| Msa0816600 | MtrunA17_Chr3g0077441 | 64.634 | 164 | 48 | 1 | 284 | 447 | 1 | 154 | 3.84e-68 | 216 |
| Msa0816600 | MtrunA17_Chr3g0077441 | 47.938 | 194 | 67 | 3 | 65 | 225 | 1 | 193 | 1.07e-47 | 162 |
| Msa0816600 | MtrunA17_Chr1g0162441 | 43.434 | 99 | 56 | 0 | 240 | 338 | 7 | 105 | 3.02e-24 | 104 |
| Msa0816600 | MtrunA17_Chr1g0162441 | 41.414 | 99 | 58 | 0 | 21 | 119 | 7 | 105 | 5.48e-24 | 103 |
| Msa0816600 | MtrunA17_Chr4g0033961 | 41.176 | 102 | 60 | 0 | 237 | 338 | 3 | 104 | 1.05e-20 | 94.0 |
| Msa0816600 | MtrunA17_Chr4g0033961 | 35.294 | 119 | 70 | 1 | 9 | 127 | 1 | 112 | 3.95e-20 | 92.4 |
| Msa0816600 | MtrunA17_Chr1g0162411 | 42.222 | 90 | 52 | 0 | 240 | 329 | 7 | 96 | 5.02e-19 | 89.0 |
| Msa0816600 | MtrunA17_Chr1g0162411 | 39.394 | 99 | 58 | 1 | 21 | 119 | 7 | 103 | 1.11e-18 | 88.2 |
| Msa0816600 | MtrunA17_Chr7g0233561 | 31.618 | 136 | 85 | 1 | 7 | 134 | 4 | 139 | 1.22e-18 | 86.7 |
| Msa0816600 | MtrunA17_Chr7g0233561 | 31.724 | 145 | 88 | 3 | 233 | 366 | 9 | 153 | 1.62e-15 | 77.4 |
| Msa0816600 | MtrunA17_Chr3g0103181 | 43.000 | 100 | 55 | 1 | 20 | 119 | 11 | 108 | 1.49e-18 | 85.5 |
| Msa0816600 | MtrunA17_Chr3g0103181 | 29.508 | 183 | 100 | 4 | 239 | 397 | 11 | 188 | 1.11e-14 | 74.3 |
| Msa0816600 | MtrunA17_Chr3g0103171 | 45.238 | 84 | 46 | 0 | 36 | 119 | 5 | 88 | 2.77e-18 | 84.3 |
| Msa0816600 | MtrunA17_Chr3g0103171 | 27.811 | 169 | 95 | 4 | 255 | 397 | 5 | 172 | 1.09e-12 | 68.2 |
| Msa0816600 | MtrunA17_Chr3g0103151 | 41.000 | 100 | 57 | 1 | 20 | 119 | 11 | 108 | 5.05e-18 | 81.3 |
| Msa0816600 | MtrunA17_Chr3g0103151 | 33.333 | 117 | 75 | 2 | 239 | 355 | 11 | 124 | 2.37e-13 | 67.8 |
| Msa0816600 | MtrunA17_Chr5g0419201 | 34.343 | 99 | 65 | 0 | 21 | 119 | 16 | 114 | 7.72e-18 | 81.6 |
| Msa0816600 | MtrunA17_Chr5g0419201 | 32.174 | 115 | 77 | 1 | 240 | 354 | 16 | 129 | 6.17e-15 | 73.2 |
| Msa0816600 | MtrunA17_Chr3g0103191 | 41.414 | 99 | 56 | 1 | 21 | 119 | 12 | 108 | 1.80e-17 | 82.0 |
| Msa0816600 | MtrunA17_Chr3g0103191 | 27.568 | 185 | 103 | 4 | 240 | 397 | 12 | 192 | 5.62e-12 | 65.9 |
| Msa0816600 | MtrunA17_Chr3g0131891 | 31.579 | 114 | 78 | 0 | 8 | 121 | 6 | 119 | 2.16e-17 | 83.2 |
| Msa0816600 | MtrunA17_Chr3g0131891 | 29.530 | 149 | 96 | 1 | 239 | 378 | 18 | 166 | 2.15e-15 | 77.0 |
| Msa0816600 | MtrunA17_Chr7g0233521 | 33.333 | 105 | 66 | 1 | 37 | 137 | 2 | 106 | 1.97e-16 | 79.3 |
| Msa0816600 | MtrunA17_Chr7g0233521 | 30.412 | 194 | 106 | 8 | 256 | 421 | 2 | 194 | 3.64e-14 | 72.8 |
| Msa0816600 | MtrunA17_Chr7g0233571 | 30.435 | 138 | 96 | 0 | 239 | 376 | 9 | 146 | 1.35e-15 | 75.9 |
| Msa0816600 | MtrunA17_Chr7g0233571 | 31.683 | 101 | 69 | 0 | 20 | 120 | 9 | 109 | 1.46e-15 | 75.9 |
| Msa0816600 | MtrunA17_Chr1g0162421 | 43.103 | 58 | 33 | 0 | 35 | 92 | 7 | 64 | 7.09e-15 | 69.3 |
| Msa0816600 | MtrunA17_Chr1g0162421 | 41.071 | 56 | 33 | 0 | 254 | 309 | 7 | 62 | 8.68e-12 | 60.5 |
| Msa0816600 | MtrunA17_Chr7g0233541 | 33.929 | 112 | 67 | 3 | 37 | 141 | 2 | 113 | 1.55e-14 | 73.9 |
| Msa0816600 | MtrunA17_Chr7g0233541 | 30.631 | 111 | 71 | 1 | 256 | 360 | 2 | 112 | 3.98e-12 | 67.0 |
| Msa0816600 | MtrunA17_Chr7g0233531 | 30.357 | 112 | 75 | 2 | 37 | 147 | 2 | 111 | 6.77e-13 | 68.9 |
| Msa0816600 | MtrunA17_Chr8g0390841 | 29.293 | 99 | 70 | 0 | 21 | 119 | 39 | 137 | 5.46e-12 | 67.8 |
| Msa0816600 | MtrunA17_Chr1g0163071 | 24.793 | 242 | 121 | 6 | 256 | 436 | 2 | 243 | 5.51e-12 | 66.6 |
| Msa0816600 | MtrunA17_Chr1g0163071 | 34.579 | 107 | 64 | 2 | 37 | 143 | 2 | 102 | 1.65e-11 | 65.1 |
| Msa0816600 | MtrunA17_Chr1g0208771 | 30.928 | 97 | 67 | 0 | 36 | 132 | 12 | 108 | 9.13e-12 | 67.0 |
| Msa0816600 | MtrunA17_Chr4g0067431 | 29.268 | 164 | 90 | 5 | 239 | 398 | 14 | 155 | 1.07e-11 | 65.9 |
| Msa0816600 | MtrunA17_Chr6g0467351 | 30.263 | 152 | 84 | 4 | 239 | 371 | 14 | 162 | 1.29e-11 | 64.3 |
| Msa0816600 | MtrunA17_Chr1g0154071 | 31.356 | 118 | 71 | 2 | 239 | 347 | 27 | 143 | 5.52e-11 | 64.3 |
| Msa0816600 | MtrunA17_Chr1g0154161 | 24.786 | 234 | 142 | 7 | 239 | 439 | 29 | 261 | 9.91e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816600 | AT1G49475.1 | 38.400 | 125 | 74 | 2 | 5 | 129 | 20 | 141 | 4.76e-20 | 88.2 |
| Msa0816600 | AT1G49475.1 | 36.036 | 111 | 70 | 1 | 238 | 348 | 32 | 141 | 3.62e-15 | 74.3 |
| Msa0816600 | AT3G18990.1 | 38.384 | 99 | 61 | 0 | 21 | 119 | 6 | 104 | 1.35e-19 | 90.1 |
| Msa0816600 | AT3G18990.1 | 40.404 | 99 | 59 | 0 | 240 | 338 | 6 | 104 | 1.26e-18 | 87.0 |
| Msa0816600 | AT4G01580.1 | 37.037 | 108 | 68 | 0 | 14 | 121 | 23 | 130 | 2.05e-19 | 86.3 |
| Msa0816600 | AT4G01580.1 | 36.441 | 118 | 73 | 1 | 225 | 340 | 13 | 130 | 1.94e-17 | 80.9 |
| Msa0816600 | AT3G18990.2 | 38.384 | 99 | 61 | 0 | 21 | 119 | 6 | 104 | 2.90e-19 | 89.4 |
| Msa0816600 | AT3G18990.2 | 40.404 | 99 | 59 | 0 | 240 | 338 | 6 | 104 | 2.65e-18 | 86.7 |
| Msa0816600 | AT3G18960.2 | 36.111 | 108 | 69 | 0 | 14 | 121 | 23 | 130 | 7.53e-19 | 84.7 |
| Msa0816600 | AT3G18960.2 | 34.454 | 119 | 76 | 1 | 224 | 340 | 12 | 130 | 2.77e-16 | 77.4 |
| Msa0816600 | AT3G18960.1 | 36.111 | 108 | 69 | 0 | 14 | 121 | 23 | 130 | 1.55e-18 | 84.3 |
| Msa0816600 | AT3G18960.1 | 34.454 | 119 | 76 | 1 | 224 | 340 | 12 | 130 | 2.52e-16 | 78.2 |
| Msa0816600 | AT3G18960.3 | 35.227 | 88 | 57 | 0 | 34 | 121 | 6 | 93 | 1.52e-13 | 68.9 |
| Msa0816600 | AT3G18960.3 | 34.884 | 86 | 56 | 0 | 255 | 340 | 8 | 93 | 2.56e-12 | 65.5 |
| Msa0816600 | AT2G24645.2 | 22.475 | 396 | 266 | 14 | 18 | 385 | 3 | 385 | 5.49e-11 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGACTTTATAACAATATT+TGG | 0.103105 | 5_3:+51104238 | Msa0816600:CDS |
| ACTGCTTTCCTTGAGAATTT+TGG | 0.150373 | 5_3:-51103297 | None:intergenic |
| ATTGCTCTCCATGAGAATTT+TGG | 0.181981 | 5_3:-51104823 | None:intergenic |
| TGTCTAAATATGCTTCTAAA+AGG | 0.186290 | 5_3:+51104590 | Msa0816600:CDS |
| GAGCACTTTGAACGAAAATA+AGG | 0.215729 | 5_3:-51104649 | None:intergenic |
| CATTCACATTGCTGATGTTT+CGG | 0.217067 | 5_3:-51104873 | None:intergenic |
| GGATGGTCTAATTTGGAAAA+TGG | 0.229629 | 5_3:+51104297 | Msa0816600:CDS |
| GACGAGTTTATAACAAGATT+TGG | 0.231276 | 5_3:+51102819 | Msa0816600:CDS |
| CTGTTCCGGATGGTCTAATT+TGG | 0.238913 | 5_3:+51104290 | Msa0816600:CDS |
| ATTCACATTGCTGATGTTTC+GGG | 0.278066 | 5_3:-51104872 | None:intergenic |
| TATGGCCTTCTTAAAATGTT+TGG | 0.280661 | 5_3:-51104069 | None:intergenic |
| AGTGAAGCATACTATTTCTT+TGG | 0.281017 | 5_3:-51102027 | None:intergenic |
| AATATTGTTATAAAGTCTTC+TGG | 0.286515 | 5_3:-51104235 | None:intergenic |
| ATTTCCTATCCATTCAAAAC+TGG | 0.287220 | 5_3:+51103053 | Msa0816600:CDS |
| GGACTATGACACTCTTTGTT+TGG | 0.315553 | 5_3:-51104511 | None:intergenic |
| AAGTGAGAGTCAAGAGAAAA+AGG | 0.347170 | 5_3:+51104558 | Msa0816600:CDS |
| TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 5_3:+51104484 | Msa0816600:CDS |
| GGTGAAATTTACAATTTGTT+TGG | 0.353537 | 5_3:-51104111 | None:intergenic |
| AAGACTTTATAACAATATTT+GGG | 0.361172 | 5_3:+51104239 | Msa0816600:CDS |
| ACGAGTTTATAACAAGATTT+GGG | 0.367534 | 5_3:+51102820 | Msa0816600:CDS |
| TTCAAAACTGGGAAGACTAA+TGG | 0.374313 | 5_3:+51103065 | Msa0816600:CDS |
| AAATCAATGCGAATAACGTT+TGG | 0.379436 | 5_3:+51103355 | Msa0816600:CDS |
| TGGAGCTTGAACAGAACATT+TGG | 0.389188 | 5_3:-51103277 | None:intergenic |
| TTTGGTTCTCCATTAGTACT+TGG | 0.396428 | 5_3:-51104493 | None:intergenic |
| TACTATTTCTTTGGTATGCA+TGG | 0.398817 | 5_3:-51102018 | None:intergenic |
| CCTCACCACATATCTTCCTT+TGG | 0.412092 | 5_3:-51104671 | None:intergenic |
| TGCAGGCGGAGAAGGAAGTT+AGG | 0.415021 | 5_3:+51104042 | Msa0816600:intron |
| TGGAGCTTGATAGGATCATC+TGG | 0.416414 | 5_3:-51104803 | None:intergenic |
| ATGAATGTGTGACGGAAGTA+TGG | 0.417605 | 5_3:-51104087 | None:intergenic |
| ACTCTCACTTGTTTCGACCT+TGG | 0.417847 | 5_3:-51104545 | None:intergenic |
| GAACACTACTCTATCTGTTA+TGG | 0.428310 | 5_3:+51102957 | Msa0816600:CDS |
| TATGTAGATTTCAAGTATGA+AGG | 0.431237 | 5_3:+51102984 | Msa0816600:CDS |
| TGTTGCTACAGTTACTGTTC+CGG | 0.431782 | 5_3:+51104276 | Msa0816600:CDS |
| TACTTGTCTTTCAAATATGA+AGG | 0.433793 | 5_3:+51104403 | Msa0816600:CDS |
| AATCTTGTTATAAACTCGTC+TGG | 0.437746 | 5_3:-51102816 | None:intergenic |
| ATTTCTTTGGTATGCATGGG+AGG | 0.447169 | 5_3:-51102014 | None:intergenic |
| TCCTTCTCCGGCGCCGGTGA+CGG | 0.453830 | 5_3:-51101960 | None:intergenic |
| TGACGGTTGCGAATGGCATA+TGG | 0.455390 | 5_3:+51102878 | Msa0816600:CDS |
| TACTTTGCAGCGAATTCAGC+AGG | 0.458261 | 5_3:-51103247 | None:intergenic |
| AGCACTTTGAACGAAAATAA+GGG | 0.459706 | 5_3:-51104648 | None:intergenic |
| TCCGTCACCGGCGCCGGAGA+AGG | 0.467872 | 5_3:+51101959 | Msa0816600:CDS |
| TTCTTTGGTATGCATGGGAG+GGG | 0.472658 | 5_3:-51102012 | None:intergenic |
| AAATTCTCATGGAGAGCAAT+GGG | 0.473190 | 5_3:+51104826 | Msa0816600:CDS |
| TTGGAATCCTTCTCCGGCGC+CGG | 0.476077 | 5_3:-51101966 | None:intergenic |
| GAGAAGATTTGTTCCGTCAC+CGG | 0.477470 | 5_3:+51101947 | Msa0816600:CDS |
| ACAAAGAGTGTCATAGTCCT+AGG | 0.483569 | 5_3:+51104515 | Msa0816600:CDS |
| GTCTAAATATGCTTCTAAAA+GGG | 0.483677 | 5_3:+51104591 | Msa0816600:CDS |
| AAATGTTTGGAATCCTTCTC+CGG | 0.487728 | 5_3:-51101972 | None:intergenic |
| ACTATTTCTTTGGTATGCAT+GGG | 0.496981 | 5_3:-51102017 | None:intergenic |
| TATTGAATTGCAGGCGGAGA+AGG | 0.498005 | 5_3:+51104034 | Msa0816600:intron |
| ATATCGACAGTCAAAGGATT+GGG | 0.499850 | 5_3:-51103120 | None:intergenic |
| ATATGCCATTCGCAACCGTC+AGG | 0.503250 | 5_3:-51102876 | None:intergenic |
| ATTTGTTCCGTCACCGGCGC+CGG | 0.504505 | 5_3:+51101953 | Msa0816600:CDS |
| ATCAAGCTCCAAAATTCTCA+TGG | 0.511554 | 5_3:+51104815 | Msa0816600:CDS |
| TTGGATTCTTTAGATTTGCA+AGG | 0.513403 | 5_3:+51103374 | Msa0816600:CDS |
| AGTGTCATAGTCCTAGGAAA+AGG | 0.516090 | 5_3:+51104521 | Msa0816600:CDS |
| CATATCGACAGTCAAAGGAT+TGG | 0.519552 | 5_3:-51103121 | None:intergenic |
| AAGGATTGGGAACGAAAAGA+AGG | 0.522583 | 5_3:-51103107 | None:intergenic |
| GCAGGCGGAGAAGGAAGTTA+GGG | 0.528822 | 5_3:+51104043 | Msa0816600:intron |
| ACAAAACAATGCAGCCTCGC+CGG | 0.533798 | 5_3:+51101925 | None:intergenic |
| AAAATTCTCATGGAGAGCAA+TGG | 0.544047 | 5_3:+51104825 | Msa0816600:CDS |
| CACCGCATATCGACAGTCAA+AGG | 0.544452 | 5_3:-51103126 | None:intergenic |
| TTTCCTATCCATTCAAAACT+GGG | 0.546790 | 5_3:+51103054 | Msa0816600:CDS |
| ATGTAGATTTCAAGTATGAA+GGG | 0.551054 | 5_3:+51102985 | Msa0816600:CDS |
| TTTCGTTCAAAGTGCTCCAA+AGG | 0.552472 | 5_3:+51104655 | Msa0816600:CDS |
| TTCAAGCTCCAAAATTCTCA+AGG | 0.552648 | 5_3:+51103289 | Msa0816600:CDS |
| TTTCTTTGGTATGCATGGGA+GGG | 0.553788 | 5_3:-51102013 | None:intergenic |
| GTGACGGAACAAATCTTCTC+CGG | 0.557768 | 5_3:-51101944 | None:intergenic |
| TCTTTGGTATGCATGGGAGG+GGG | 0.563298 | 5_3:-51102011 | None:intergenic |
| TGGATTCTTTAGATTTGCAA+GGG | 0.565236 | 5_3:+51103375 | Msa0816600:CDS |
| CTGTTCCTGACGGTTGCGAA+TGG | 0.576577 | 5_3:+51102871 | Msa0816600:CDS |
| TATTGTGTATTGAATAAAAG+CGG | 0.577376 | 5_3:+51103328 | Msa0816600:CDS |
| TGTGTATTGAATAAAAGCGG+TGG | 0.597510 | 5_3:+51103331 | Msa0816600:CDS |
| AGGGAAAACAATCTATCCGA+TGG | 0.598527 | 5_3:+51103394 | Msa0816600:CDS |
| AAAATTCTCAAGGAAAGCAG+TGG | 0.599450 | 5_3:+51103299 | Msa0816600:CDS |
| ATAGAGTAGTGTTCTGCGAA+CGG | 0.599484 | 5_3:-51102948 | None:intergenic |
| AAAATGGAGTTGAAGATATG+TGG | 0.601427 | 5_3:+51104313 | Msa0816600:CDS |
| AGGATTGGGAACGAAAAGAA+GGG | 0.605751 | 5_3:-51103106 | None:intergenic |
| TTCACATTGCTGATGTTTCG+GGG | 0.620841 | 5_3:-51104871 | None:intergenic |
| GTGCTCCAAAGGAAGATATG+TGG | 0.623189 | 5_3:+51104666 | Msa0816600:CDS |
| GCTACGATTACTGTTCCTGA+CGG | 0.625910 | 5_3:+51102861 | Msa0816600:CDS |
| ATCCTTTGACTGTCGATATG+CGG | 0.632326 | 5_3:+51103124 | Msa0816600:CDS |
| GCTACAGTTACTGTTCCGGA+TGG | 0.632577 | 5_3:+51104280 | Msa0816600:CDS |
| AAATTCTCAAGGAAAGCAGT+GGG | 0.637805 | 5_3:+51103300 | Msa0816600:CDS |
| AAACTCATACATAACTCCAT+CGG | 0.639008 | 5_3:-51103410 | None:intergenic |
| TAGTCCTAGGAAAAGGTCCA+AGG | 0.641569 | 5_3:+51104528 | Msa0816600:CDS |
| GGAGTTGAAGATATGTGGCA+AGG | 0.642891 | 5_3:+51104318 | Msa0816600:CDS |
| ACAAGTTACAGCTTCTCACA+CGG | 0.646742 | 5_3:+51103465 | Msa0816600:CDS |
| ATGAGTTTGAGCTTATCAAG+AGG | 0.652349 | 5_3:+51103425 | Msa0816600:CDS |
| TGTTTGGCATGAATGTGTGA+CGG | 0.688652 | 5_3:-51104095 | None:intergenic |
| CATATGGAAGTGAAGAAATG+TGG | 0.695642 | 5_3:+51102894 | Msa0816600:CDS |
| GGAACAAATCTTCTCCGGCG+AGG | 0.698114 | 5_3:-51101939 | None:intergenic |
| GTAACTTGTAACACAACACG+CGG | 0.742805 | 5_3:-51103451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTAGTTATATATTTA+TGG | + | chr5_3:51103184-51103203 | Msa0816600:intron | 10.0% |
| !! | AAGACTTTATAACAATATTT+GGG | + | chr5_3:51104239-51104258 | Msa0816600:CDS | 15.0% |
| !!! | TTTTCAAAATACTATTCTAT+AGG | + | chr5_3:51104370-51104389 | Msa0816600:CDS | 15.0% |
| !!! | AATGGTTTTCATAAAATGTT+TGG | - | chr5_3:51101988-51102007 | None:intergenic | 20.0% |
| !!! | AAGTTTTCTTTTGCAAAAAT+TGG | + | chr5_3:51102922-51102941 | Msa0816600:CDS | 20.0% |
| !! | TATTGTGTATTGAATAAAAG+CGG | + | chr5_3:51103328-51103347 | Msa0816600:CDS | 20.0% |
| !! | TGTTGTATTGTAATTCATAT+AGG | + | chr5_3:51103559-51103578 | Msa0816600:intron | 20.0% |
| !!! | ATTGATGATAGCAATAAAAA+GGG | - | chr5_3:51103797-51103816 | None:intergenic | 20.0% |
| !!! | TCTTTGTTTATAATGTGAAT+CGG | + | chr5_3:51103976-51103995 | Msa0816600:intron | 20.0% |
| !! | AATATTGTTATAAAGTCTTC+TGG | - | chr5_3:51104238-51104257 | None:intergenic | 20.0% |
| !! | GAAGACTTTATAACAATATT+TGG | + | chr5_3:51104238-51104257 | Msa0816600:CDS | 20.0% |
| !!! | TAGAATAGTATTTTGAAAAC+TGG | - | chr5_3:51104369-51104388 | None:intergenic | 20.0% |
| !! | TACTGATTGTACAATTTGTT+TGG | + | chr5_3:51102254-51102273 | Msa0816600:intron | 25.0% |
| !! | TAGTTGACTTTATATGTATG+AGG | - | chr5_3:51102291-51102310 | None:intergenic | 25.0% |
| ! | GAGAGTAATTACTTAAATTG+TGG | + | chr5_3:51102742-51102761 | Msa0816600:intron | 25.0% |
| ! | ACGAGTTTATAACAAGATTT+GGG | + | chr5_3:51102820-51102839 | Msa0816600:CDS | 25.0% |
| !! | TATGTAGATTTCAAGTATGA+AGG | + | chr5_3:51102984-51103003 | Msa0816600:CDS | 25.0% |
| !! | ATGTAGATTTCAAGTATGAA+GGG | + | chr5_3:51102985-51103004 | Msa0816600:CDS | 25.0% |
| !! | GGATTTTACTATACATTACT+TGG | + | chr5_3:51103150-51103169 | Msa0816600:intron | 25.0% |
| !!! | ATTCATATAGGTAGTTTTGT+TGG | + | chr5_3:51103571-51103590 | Msa0816600:intron | 25.0% |
| !!! | TTACCCTATTTTTACATAAG+AGG | - | chr5_3:51103696-51103715 | None:intergenic | 25.0% |
| ! | TCTTATGTAAAAATAGGGTA+AGG | + | chr5_3:51103695-51103714 | Msa0816600:intron | 25.0% |
| !! | CATTGATGATAGCAATAAAA+AGG | - | chr5_3:51103798-51103817 | None:intergenic | 25.0% |
| ! | CTTATTACTTATTGAATTGC+AGG | + | chr5_3:51104025-51104044 | Msa0816600:intron | 25.0% |
| !! | GGTGAAATTTACAATTTGTT+TGG | - | chr5_3:51104114-51104133 | None:intergenic | 25.0% |
| ! | CGTTCAATAATATAACTCAT+CGG | - | chr5_3:51104192-51104211 | None:intergenic | 25.0% |
| ! | TACTTGTCTTTCAAATATGA+AGG | + | chr5_3:51104403-51104422 | Msa0816600:CDS | 25.0% |
| ! | TGTCTAAATATGCTTCTAAA+AGG | + | chr5_3:51104590-51104609 | Msa0816600:CDS | 25.0% |
| !! | GTCTAAATATGCTTCTAAAA+GGG | + | chr5_3:51104591-51104610 | Msa0816600:CDS | 25.0% |
| !!! | AACGAAAATAAGGGTTTTTT+GGG | - | chr5_3:51104642-51104661 | None:intergenic | 25.0% |
| !! | GGATTTTACTTTGTAGTTTT+TGG | + | chr5_3:51104692-51104711 | Msa0816600:intron | 25.0% |
| ! | ACTATTTCTTTGGTATGCAT+GGG | - | chr5_3:51102020-51102039 | None:intergenic | 30.0% |
| ! | TACTATTTCTTTGGTATGCA+TGG | - | chr5_3:51102021-51102040 | None:intergenic | 30.0% |
| ! | AGTGAAGCATACTATTTCTT+TGG | - | chr5_3:51102030-51102049 | None:intergenic | 30.0% |
| TTTGTATGTTTGGACATTCA+AGG | + | chr5_3:51102522-51102541 | Msa0816600:intron | 30.0% | |
| TTAGTGTGTCTTTCATTCTA+TGG | + | chr5_3:51102561-51102580 | Msa0816600:intron | 30.0% | |
| ! | AATCTTGTTATAAACTCGTC+TGG | - | chr5_3:51102819-51102838 | None:intergenic | 30.0% |
| GACGAGTTTATAACAAGATT+TGG | + | chr5_3:51102819-51102838 | Msa0816600:CDS | 30.0% | |
| ATTTCCTATCCATTCAAAAC+TGG | + | chr5_3:51103053-51103072 | Msa0816600:CDS | 30.0% | |
| TTTCCTATCCATTCAAAACT+GGG | + | chr5_3:51103054-51103073 | Msa0816600:CDS | 30.0% | |
| !!! | AACGAAAAGAAGGGTTTTTT+GGG | - | chr5_3:51103100-51103119 | None:intergenic | 30.0% |
| AAATCAATGCGAATAACGTT+TGG | + | chr5_3:51103355-51103374 | Msa0816600:CDS | 30.0% | |
| TTGGATTCTTTAGATTTGCA+AGG | + | chr5_3:51103374-51103393 | Msa0816600:CDS | 30.0% | |
| TGGATTCTTTAGATTTGCAA+GGG | + | chr5_3:51103375-51103394 | Msa0816600:CDS | 30.0% | |
| AAACTCATACATAACTCCAT+CGG | - | chr5_3:51103413-51103432 | None:intergenic | 30.0% | |
| ACAGCCTCTTATGTAAAAAT+AGG | + | chr5_3:51103689-51103708 | Msa0816600:intron | 30.0% | |
| CAGCCTCTTATGTAAAAATA+GGG | + | chr5_3:51103690-51103709 | Msa0816600:intron | 30.0% | |
| TACAATACACCAAAAATGGT+GGG | + | chr5_3:51103723-51103742 | Msa0816600:intron | 30.0% | |
| GATAATGAGAAAGAACGATT+AGG | - | chr5_3:51103870-51103889 | None:intergenic | 30.0% | |
| AAGAATAATGAACTCGTATG+TGG | - | chr5_3:51103960-51103979 | None:intergenic | 30.0% | |
| ATTACTTATTGAATTGCAGG+CGG | + | chr5_3:51104028-51104047 | Msa0816600:intron | 30.0% | |
| !! | GGAATCCAAACATTTTAAGA+AGG | + | chr5_3:51104064-51104083 | Msa0816600:CDS | 30.0% |
| TATGGCCTTCTTAAAATGTT+TGG | - | chr5_3:51104072-51104091 | None:intergenic | 30.0% | |
| ! | ATTTTCCAAATTAGACCATC+CGG | - | chr5_3:51104298-51104317 | None:intergenic | 30.0% |
| AAAATGGAGTTGAAGATATG+TGG | + | chr5_3:51104313-51104332 | Msa0816600:CDS | 30.0% | |
| ! | ACGTTTTCTTTTGCAACAAA+TGG | + | chr5_3:51104341-51104360 | Msa0816600:CDS | 30.0% |
| !!! | TTAGTACTTGGAGTTTTGAA+TGG | - | chr5_3:51104484-51104503 | None:intergenic | 30.0% |
| TTCAAAACTCCAAGTACTAA+TGG | + | chr5_3:51104484-51104503 | Msa0816600:CDS | 30.0% | |
| !!! | GAACGAAAATAAGGGTTTTT+TGG | - | chr5_3:51104643-51104662 | None:intergenic | 30.0% |
| AGCACTTTGAACGAAAATAA+GGG | - | chr5_3:51104651-51104670 | None:intergenic | 30.0% | |
| ! | AAATGTTTGGAATCCTTCTC+CGG | - | chr5_3:51101975-51101994 | None:intergenic | 35.0% |
| TCTAATGCATGCACGATTTA+TGG | - | chr5_3:51102079-51102098 | None:intergenic | 35.0% | |
| !! | CACAAAAAGAGATTTTCGAG+CGG | - | chr5_3:51102464-51102483 | None:intergenic | 35.0% |
| ! | GTGTGACTCTTTTGTATGTT+TGG | + | chr5_3:51102512-51102531 | Msa0816600:intron | 35.0% |
| !! | TGAGAGTGACTTAAGTTGAA+TGG | + | chr5_3:51102608-51102627 | Msa0816600:intron | 35.0% |
| TTACTCTCATGAAAAGCTTC+AGG | - | chr5_3:51102730-51102749 | None:intergenic | 35.0% | |
| CATATGGAAGTGAAGAAATG+TGG | + | chr5_3:51102894-51102913 | Msa0816600:CDS | 35.0% | |
| GAACACTACTCTATCTGTTA+TGG | + | chr5_3:51102957-51102976 | Msa0816600:CDS | 35.0% | |
| !!! | TTAGTCTTCCCAGTTTTGAA+TGG | - | chr5_3:51103065-51103084 | None:intergenic | 35.0% |
| TTCAAAACTGGGAAGACTAA+TGG | + | chr5_3:51103065-51103084 | Msa0816600:CDS | 35.0% | |
| !!! | AAAGAAGGGTTTTTTGGGTT+TGG | - | chr5_3:51103095-51103114 | None:intergenic | 35.0% |
| !!! | GAACGAAAAGAAGGGTTTTT+TGG | - | chr5_3:51103101-51103120 | None:intergenic | 35.0% |
| ATATCGACAGTCAAAGGATT+GGG | - | chr5_3:51103123-51103142 | None:intergenic | 35.0% | |
| TTCAAGCTCCAAAATTCTCA+AGG | + | chr5_3:51103289-51103308 | Msa0816600:CDS | 35.0% | |
| ! | ACTGCTTTCCTTGAGAATTT+TGG | - | chr5_3:51103300-51103319 | None:intergenic | 35.0% |
| AAAATTCTCAAGGAAAGCAG+TGG | + | chr5_3:51103299-51103318 | Msa0816600:CDS | 35.0% | |
| AAATTCTCAAGGAAAGCAGT+GGG | + | chr5_3:51103300-51103319 | Msa0816600:CDS | 35.0% | |
| TGTGTATTGAATAAAAGCGG+TGG | + | chr5_3:51103331-51103350 | Msa0816600:CDS | 35.0% | |
| ATGAGTTTGAGCTTATCAAG+AGG | + | chr5_3:51103425-51103444 | Msa0816600:CDS | 35.0% | |
| !!! | AGGTAGTTTTGTTGGTTGTT+AGG | + | chr5_3:51103579-51103598 | Msa0816600:intron | 35.0% |
| AGCTATCATCAATGACTGAA+AGG | + | chr5_3:51103618-51103637 | Msa0816600:intron | 35.0% | |
| TGCGTACAATACACCAAAAA+TGG | + | chr5_3:51103719-51103738 | Msa0816600:intron | 35.0% | |
| GTACAATACACCAAAAATGG+TGG | + | chr5_3:51103722-51103741 | Msa0816600:intron | 35.0% | |
| TAGCAATAAAAAGGGCAATC+CGG | - | chr5_3:51103789-51103808 | None:intergenic | 35.0% | |
| GCTATCATCAATGAGCAATA+TGG | + | chr5_3:51103805-51103824 | Msa0816600:intron | 35.0% | |
| !! | TAACTCATCGGTTCTACTAT+AGG | - | chr5_3:51104180-51104199 | None:intergenic | 35.0% |
| GGATGGTCTAATTTGGAAAA+TGG | + | chr5_3:51104297-51104316 | Msa0816600:CDS | 35.0% | |
| !! | TTTGGTTCTCCATTAGTACT+TGG | - | chr5_3:51104496-51104515 | None:intergenic | 35.0% |
| AAGTGAGAGTCAAGAGAAAA+AGG | + | chr5_3:51104558-51104577 | Msa0816600:CDS | 35.0% | |
| GAGCACTTTGAACGAAAATA+AGG | - | chr5_3:51104652-51104671 | None:intergenic | 35.0% | |
| AGAAGTAACATACTGCACAA+TGG | - | chr5_3:51104759-51104778 | None:intergenic | 35.0% | |
| !!! | TGAGAATTTTGGAGCTTGAT+AGG | - | chr5_3:51104815-51104834 | None:intergenic | 35.0% |
| ATCAAGCTCCAAAATTCTCA+TGG | + | chr5_3:51104815-51104834 | Msa0816600:CDS | 35.0% | |
| ! | ATTGCTCTCCATGAGAATTT+TGG | - | chr5_3:51104826-51104845 | None:intergenic | 35.0% |
| AAAATTCTCATGGAGAGCAA+TGG | + | chr5_3:51104825-51104844 | Msa0816600:CDS | 35.0% | |
| AAATTCTCATGGAGAGCAAT+GGG | + | chr5_3:51104826-51104845 | Msa0816600:CDS | 35.0% | |
| TTTCTTTGGTATGCATGGGA+GGG | - | chr5_3:51102016-51102035 | None:intergenic | 40.0% | |
| ATTTCTTTGGTATGCATGGG+AGG | - | chr5_3:51102017-51102036 | None:intergenic | 40.0% | |
| GGTAACTGAAAACGAAAGTG+AGG | - | chr5_3:51102058-51102077 | None:intergenic | 40.0% | |
| ! | ATCACCCTTCCTCTAAAGAT+TGG | + | chr5_3:51102778-51102797 | Msa0816600:intron | 40.0% |
| ! | GTGACCAATCTTTAGAGGAA+GGG | - | chr5_3:51102785-51102804 | None:intergenic | 40.0% |
| ! | AGTGACCAATCTTTAGAGGA+AGG | - | chr5_3:51102786-51102805 | None:intergenic | 40.0% |
| ATAGAGTAGTGTTCTGCGAA+CGG | - | chr5_3:51102951-51102970 | None:intergenic | 40.0% | |
| !!! | CTTCCCAGTTTTGAATGGAT+AGG | - | chr5_3:51103060-51103079 | None:intergenic | 40.0% |
| AGGATTGGGAACGAAAAGAA+GGG | - | chr5_3:51103109-51103128 | None:intergenic | 40.0% | |
| AAGGATTGGGAACGAAAAGA+AGG | - | chr5_3:51103110-51103129 | None:intergenic | 40.0% | |
| CATATCGACAGTCAAAGGAT+TGG | - | chr5_3:51103124-51103143 | None:intergenic | 40.0% | |
| ATCCTTTGACTGTCGATATG+CGG | + | chr5_3:51103124-51103143 | Msa0816600:CDS | 40.0% | |
| AGGAACATACTACACAATGG+AGG | - | chr5_3:51103230-51103249 | None:intergenic | 40.0% | |
| AGCAGGAACATACTACACAA+TGG | - | chr5_3:51103233-51103252 | None:intergenic | 40.0% | |
| TGGAGCTTGAACAGAACATT+TGG | - | chr5_3:51103280-51103299 | None:intergenic | 40.0% | |
| AGGGAAAACAATCTATCCGA+TGG | + | chr5_3:51103394-51103413 | Msa0816600:CDS | 40.0% | |
| ! | GTAACTTGTAACACAACACG+CGG | - | chr5_3:51103454-51103473 | None:intergenic | 40.0% |
| ACAAGTTACAGCTTCTCACA+CGG | + | chr5_3:51103465-51103484 | Msa0816600:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr5_3:51103645-51103664 | Msa0816600:intron | 40.0% | |
| TCATGTGACTGAAAGGTCAT+GGG | + | chr5_3:51103652-51103671 | Msa0816600:intron | 40.0% | |
| ! | TTACATAAGAGGCTGTTTCC+AGG | - | chr5_3:51103685-51103704 | None:intergenic | 40.0% |
| ! | ATGAATGTGTGACGGAAGTA+TGG | - | chr5_3:51104090-51104109 | None:intergenic | 40.0% |
| TGTTTGGCATGAATGTGTGA+CGG | - | chr5_3:51104098-51104117 | None:intergenic | 40.0% | |
| TGTTGCTACAGTTACTGTTC+CGG | + | chr5_3:51104276-51104295 | Msa0816600:CDS | 40.0% | |
| GGACTATGACACTCTTTGTT+TGG | - | chr5_3:51104514-51104533 | None:intergenic | 40.0% | |
| !! | ACAAAGAGTGTCATAGTCCT+AGG | + | chr5_3:51104515-51104534 | Msa0816600:CDS | 40.0% |
| AGTGTCATAGTCCTAGGAAA+AGG | + | chr5_3:51104521-51104540 | Msa0816600:CDS | 40.0% | |
| !!! | GTTTTTTGGGCTGAATGCAT+TGG | - | chr5_3:51104629-51104648 | None:intergenic | 40.0% |
| ! | TTTCGTTCAAAGTGCTCCAA+AGG | + | chr5_3:51104655-51104674 | Msa0816600:CDS | 40.0% |
| ! | GTGACGGAACAAATCTTCTC+CGG | - | chr5_3:51101947-51101966 | None:intergenic | 45.0% |
| ! | GAGAAGATTTGTTCCGTCAC+CGG | + | chr5_3:51101947-51101966 | Msa0816600:CDS | 45.0% |
| TTCTTTGGTATGCATGGGAG+GGG | - | chr5_3:51102015-51102034 | None:intergenic | 45.0% | |
| CTGCAGTGACCAATCTTTAG+AGG | - | chr5_3:51102790-51102809 | None:intergenic | 45.0% | |
| GCTACGATTACTGTTCCTGA+CGG | + | chr5_3:51102861-51102880 | Msa0816600:CDS | 45.0% | |
| TACTTTGCAGCGAATTCAGC+AGG | - | chr5_3:51103250-51103269 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+TGG | + | chr5_3:51103651-51103670 | Msa0816600:intron | 45.0% | |
| TATTGAATTGCAGGCGGAGA+AGG | + | chr5_3:51104034-51104053 | Msa0816600:intron | 45.0% | |
| CTGTTCCGGATGGTCTAATT+TGG | + | chr5_3:51104290-51104309 | Msa0816600:CDS | 45.0% | |
| GGAGTTGAAGATATGTGGCA+AGG | + | chr5_3:51104318-51104337 | Msa0816600:CDS | 45.0% | |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr5_3:51104528-51104547 | Msa0816600:CDS | 45.0% | |
| ACTCTCACTTGTTTCGACCT+TGG | - | chr5_3:51104548-51104567 | None:intergenic | 45.0% | |
| GTGCTCCAAAGGAAGATATG+TGG | + | chr5_3:51104666-51104685 | Msa0816600:CDS | 45.0% | |
| CCTCACCACATATCTTCCTT+TGG | - | chr5_3:51104674-51104693 | None:intergenic | 45.0% | |
| CCAAAGGAAGATATGTGGTG+AGG | + | chr5_3:51104671-51104690 | Msa0816600:intron | 45.0% | |
| TGGAGCTTGATAGGATCATC+TGG | - | chr5_3:51104806-51104825 | None:intergenic | 45.0% | |
| TCTTTGGTATGCATGGGAGG+GGG | - | chr5_3:51102014-51102033 | None:intergenic | 50.0% | |
| GCTTCAGGTAAGTGCGTGTT+TGG | - | chr5_3:51102715-51102734 | None:intergenic | 50.0% | |
| ATATGCCATTCGCAACCGTC+AGG | - | chr5_3:51102879-51102898 | None:intergenic | 50.0% | |
| TGACGGTTGCGAATGGCATA+TGG | + | chr5_3:51102878-51102897 | Msa0816600:CDS | 50.0% | |
| CACCGCATATCGACAGTCAA+AGG | - | chr5_3:51103129-51103148 | None:intergenic | 50.0% | |
| TTGACTGTCGATATGCGGTG+AGG | + | chr5_3:51103129-51103148 | Msa0816600:intron | 50.0% | |
| AAGGTCATGGGTTCAAGTCC+TGG | + | chr5_3:51103664-51103683 | Msa0816600:intron | 50.0% | |
| CTAAAGCTCCCGCATACTCA+GGG | - | chr5_3:51103762-51103781 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATACTC+AGG | - | chr5_3:51103763-51103782 | None:intergenic | 50.0% | |
| GCTACAGTTACTGTTCCGGA+TGG | + | chr5_3:51104280-51104299 | Msa0816600:CDS | 50.0% | |
| ! | TCGACCTTGGACCTTTTCCT+AGG | - | chr5_3:51104535-51104554 | None:intergenic | 50.0% |
| GGAACAAATCTTCTCCGGCG+AGG | - | chr5_3:51101942-51101961 | None:intergenic | 55.0% | |
| ATGCATGGGAGGGGGAAGAA+TGG | - | chr5_3:51102006-51102025 | None:intergenic | 55.0% | |
| CTGTTCCTGACGGTTGCGAA+TGG | + | chr5_3:51102871-51102890 | Msa0816600:CDS | 55.0% | |
| ! | GGAAGGGGTCCCACCATTTT+TGG | - | chr5_3:51103735-51103754 | None:intergenic | 55.0% |
| ! | AAAATGGTGGGACCCCTTCC+CGG | + | chr5_3:51103735-51103754 | Msa0816600:intron | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr5_3:51103767-51103786 | Msa0816600:intron | 55.0% |
| TGCAGGCGGAGAAGGAAGTT+AGG | + | chr5_3:51104042-51104061 | Msa0816600:intron | 55.0% | |
| GCAGGCGGAGAAGGAAGTTA+GGG | + | chr5_3:51104043-51104062 | Msa0816600:intron | 55.0% | |
| AGAGAGAGAGAGAGAGCGAG+AGG | - | chr5_3:51104135-51104154 | None:intergenic | 55.0% | |
| ATTTGTTCCGTCACCGGCGC+CGG | + | chr5_3:51101953-51101972 | Msa0816600:CDS | 60.0% | |
| TTGGAATCCTTCTCCGGCGC+CGG | - | chr5_3:51101969-51101988 | None:intergenic | 60.0% | |
| CATACTCAGGGTCCGGGAAG+GGG | - | chr5_3:51103750-51103769 | None:intergenic | 60.0% | |
| GCATACTCAGGGTCCGGGAA+GGG | - | chr5_3:51103751-51103770 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGAGTATG+CGG | + | chr5_3:51103750-51103769 | Msa0816600:intron | 60.0% | |
| TTCCCGGACCCTGAGTATGC+GGG | + | chr5_3:51103751-51103770 | Msa0816600:intron | 60.0% | |
| CGCATACTCAGGGTCCGGGA+AGG | - | chr5_3:51103752-51103771 | None:intergenic | 65.0% | |
| CTCCCGCATACTCAGGGTCC+GGG | - | chr5_3:51103756-51103775 | None:intergenic | 65.0% | |
| GCTCCCGCATACTCAGGGTC+CGG | - | chr5_3:51103757-51103776 | None:intergenic | 65.0% | |
| !! | TCCTTCTCCGGCGCCGGTGA+CGG | - | chr5_3:51101963-51101982 | None:intergenic | 70.0% |
| ! | TCCGTCACCGGCGCCGGAGA+AGG | + | chr5_3:51101959-51101978 | Msa0816600:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51101933 | 51104892 | 51101933 | ID=Msa0816600;Name=Msa0816600 |
| chr5_3 | mRNA | 51101933 | 51104892 | 51101933 | ID=Msa0816600-mRNA-1;Parent=Msa0816600;Name=Msa0816600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.4|0|1|1|1|6|0|448 |
| chr5_3 | exon | 51101933 | 51102037 | 51101933 | ID=Msa0816600-mRNA-1:exon:15347;Parent=Msa0816600-mRNA-1 |
| chr5_3 | exon | 51102810 | 51103145 | 51102810 | ID=Msa0816600-mRNA-1:exon:15348;Parent=Msa0816600-mRNA-1 |
| chr5_3 | exon | 51103241 | 51103486 | 51103241 | ID=Msa0816600-mRNA-1:exon:15349;Parent=Msa0816600-mRNA-1 |
| chr5_3 | exon | 51104047 | 51104121 | 51104047 | ID=Msa0816600-mRNA-1:exon:15350;Parent=Msa0816600-mRNA-1 |
| chr5_3 | exon | 51104229 | 51104687 | 51104229 | ID=Msa0816600-mRNA-1:exon:15351;Parent=Msa0816600-mRNA-1 |
| chr5_3 | exon | 51104767 | 51104892 | 51104767 | ID=Msa0816600-mRNA-1:exon:15352;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51101933 | 51102037 | 51101933 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51102810 | 51103145 | 51102810 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51103241 | 51103486 | 51103241 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51104047 | 51104121 | 51104047 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51104229 | 51104687 | 51104229 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| chr5_3 | CDS | 51104767 | 51104892 | 51104767 | ID=Msa0816600-mRNA-1:cds;Parent=Msa0816600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
