Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816750 | XP_003616418.1 | 87.204 | 422 | 41 | 5 | 1 | 420 | 1 | 411 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816750 | G7KBS3 | 87.204 | 422 | 41 | 5 | 1 | 420 | 1 | 411 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0816750 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816750 | MtrunA17_Chr5g0435401 | 87.204 | 422 | 41 | 5 | 1 | 420 | 1 | 411 | 0.0 | 739 |
| Msa0816750 | MtrunA17_Chr5g0445971 | 66.906 | 139 | 38 | 2 | 45 | 183 | 34 | 164 | 6.30e-54 | 177 |
| Msa0816750 | MtrunA17_Chr1g0192841 | 40.081 | 247 | 90 | 3 | 182 | 419 | 44 | 241 | 3.32e-44 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGTTTAACTCAATTAA+TGG | 0.155570 | 5_3:+51323944 | Msa0816750:CDS |
| CAAGATCTTCAGTGCTCTTT+TGG | 0.157665 | 5_3:-51325292 | None:intergenic |
| ATTCAAATCACCTGGGAAAA+AGG | 0.184616 | 5_3:-51325450 | None:intergenic |
| AAAGCTGATCATCAGTTTAA+AGG | 0.242114 | 5_3:+51325048 | Msa0816750:CDS |
| CCAGTTGCAATTTGAGTTGC+AGG | 0.243041 | 5_3:-51323732 | None:intergenic |
| TCGTAAGCTCACTGAGCTTT+TGG | 0.297529 | 5_3:+51322823 | Msa0816750:CDS |
| AGTTGTTTCTGCACTAAAAC+TGG | 0.332000 | 5_3:+51323620 | Msa0816750:CDS |
| GACTACTTTAGTCAAATTAC+AGG | 0.332385 | 5_3:+51324005 | Msa0816750:CDS |
| TTAAACTAGTGGTTGAGTTT+TGG | 0.344431 | 5_3:-51323932 | None:intergenic |
| TTATATCCACTCTGTCCTAT+TGG | 0.357025 | 5_3:-51324656 | None:intergenic |
| AGAGGAAAGCATGAAGATAA+AGG | 0.358251 | 5_3:+51325247 | Msa0816750:CDS |
| CTCTCAGTGAGGATATAATA+TGG | 0.364315 | 5_3:-51322794 | None:intergenic |
| TTCATGCTTTCCTCTTCATA+TGG | 0.373376 | 5_3:-51325239 | None:intergenic |
| TTCACGCTTGCCTCTTCATA+TGG | 0.385956 | 5_3:-51324904 | None:intergenic |
| GTCTAGCGCATTCATGTTTG+AGG | 0.401999 | 5_3:-51325023 | None:intergenic |
| AGGTTGATCAAGAAAAGAAA+TGG | 0.402611 | 5_3:+51323592 | Msa0816750:intron |
| AGAGGCAAGCGTGAAGATAA+AGG | 0.407513 | 5_3:+51324912 | Msa0816750:CDS |
| GTTGTCAGACAAGGAGAAAC+AGG | 0.408256 | 5_3:+51324775 | Msa0816750:CDS |
| CGTTTGTTAGATTTGCCAAC+CGG | 0.412869 | 5_3:+51325479 | Msa0816750:CDS |
| CCTCTGTCAAACTACTCTTT+TGG | 0.416635 | 5_3:+51325371 | Msa0816750:CDS |
| TTAATTTCATTAATGGAAGA+AGG | 0.420089 | 5_3:+51322668 | None:intergenic |
| ATTGCAACTGGCAGCAATAC+AGG | 0.426800 | 5_3:+51323744 | Msa0816750:CDS |
| AACAACAAGTATAGTCATTC+AGG | 0.429046 | 5_3:-51325506 | None:intergenic |
| TCGTGACCTCCAAGTAAAAC+AGG | 0.439872 | 5_3:-51323381 | None:intergenic |
| CGATAATCATTCAAATCACC+TGG | 0.440231 | 5_3:-51325458 | None:intergenic |
| TTGAGACATTGTACTTCTAC+AGG | 0.444314 | 5_3:+51323706 | Msa0816750:CDS |
| CAACAACGCAGCGGTGGACT+TGG | 0.447065 | 5_3:+51325394 | Msa0816750:CDS |
| AGGAAAGGAATTAGTAGTGA+TGG | 0.453771 | 5_3:+51322688 | Msa0816750:CDS |
| TAGTAGTCACCACACACAAT+AGG | 0.457698 | 5_3:-51325332 | None:intergenic |
| AGAACAAAGAAAAGAAGAAA+CGG | 0.457756 | 5_3:+51324624 | Msa0816750:CDS |
| TACTTGGAGGTCACGAAAAG+AGG | 0.458176 | 5_3:+51323388 | Msa0816750:CDS |
| CCTGCAACTCAAATTGCAAC+TGG | 0.458671 | 5_3:+51323732 | Msa0816750:CDS |
| AAACGGAGAGGTGCTCCAAT+AGG | 0.474962 | 5_3:+51324641 | Msa0816750:CDS |
| TTCATTAATGGAAGAAGGAA+AGG | 0.479210 | 5_3:+51322673 | None:intergenic |
| TATGCACTCTTCTGTCCCCT+TGG | 0.481011 | 5_3:-51324991 | None:intergenic |
| GTAAAACAGGTACAAGTCAA+TGG | 0.487500 | 5_3:-51323368 | None:intergenic |
| TTCATCAATGGAAGAAGCAA+AGG | 0.491657 | 5_3:+51322751 | Msa0816750:CDS |
| GGTTGATCAAGAAAAGAAAT+GGG | 0.491923 | 5_3:+51323593 | Msa0816750:intron |
| AGAAGCAAAGGAATTAGAGA+TGG | 0.514965 | 5_3:+51322763 | Msa0816750:CDS |
| GTATAGTCATTCAGGTTGCC+CGG | 0.521929 | 5_3:-51325498 | None:intergenic |
| AAATCAAGGCTATTGATGCT+TGG | 0.522485 | 5_3:+51325079 | Msa0816750:CDS |
| TCTATATAGGTCCAGTTGAA+AGG | 0.528822 | 5_3:+51323907 | Msa0816750:intron |
| TAGAGATGGCTATTGATGCT+TGG | 0.538363 | 5_3:+51324747 | Msa0816750:CDS |
| TCGACTTAAAGCTTATCATC+AGG | 0.545141 | 5_3:+51324703 | Msa0816750:CDS |
| AGTCATTCAGGTTGCCCGGT+TGG | 0.550424 | 5_3:-51325494 | None:intergenic |
| AACATGAGATTGAATCCAGA+AGG | 0.564550 | 5_3:-51322848 | None:intergenic |
| GTTTGTTAGATTTGCCAACC+GGG | 0.569352 | 5_3:+51325480 | Msa0816750:CDS |
| TTTCATGTAGCCATATGAAG+AGG | 0.580743 | 5_3:+51324894 | Msa0816750:intron |
| GTTTCTGCACTAAAACTGGA+AGG | 0.584593 | 5_3:+51323624 | Msa0816750:CDS |
| ATATAATATATTCCTCAAGC+AGG | 0.589592 | 5_3:+51324673 | Msa0816750:CDS |
| GTCGAGCACACTCCTGCTTG+AGG | 0.592986 | 5_3:-51324685 | None:intergenic |
| AGAAACGTAGAGGTGTTCCA+AGG | 0.594900 | 5_3:+51324974 | Msa0816750:CDS |
| GAAACGTAGAGGTGTTCCAA+GGG | 0.599523 | 5_3:+51324975 | Msa0816750:CDS |
| TTTCATGTAGCCATATGAAG+AGG | 0.611306 | 5_3:+51325229 | Msa0816750:intron |
| CCAAAAGAGTAGTTTGACAG+AGG | 0.617143 | 5_3:-51325371 | None:intergenic |
| GCTTATCATCAGGACGTAGG+TGG | 0.622815 | 5_3:+51324713 | Msa0816750:CDS |
| CATTAATTGAGTTAAACTAG+TGG | 0.627432 | 5_3:-51323943 | None:intergenic |
| GGAATTAGTAGTGATGGAGA+TGG | 0.631774 | 5_3:+51322694 | Msa0816750:CDS |
| TGGATATCAAGAATTTCAAG+TGG | 0.632369 | 5_3:+51324583 | Msa0816750:CDS |
| AAAGGAATTAGAGATGGAGA+TGG | 0.637239 | 5_3:+51322769 | Msa0816750:CDS |
| AATTTGACTAAAGTAGTCCT+CGG | 0.641166 | 5_3:-51324000 | None:intergenic |
| TTGGAGGTCACGAAAAGAGG+AGG | 0.644365 | 5_3:+51323391 | Msa0816750:CDS |
| GGACGATCAAGATTATCAGA+AGG | 0.646995 | 5_3:+51323965 | Msa0816750:CDS |
| GATAATCATTCAAATCACCT+GGG | 0.650646 | 5_3:-51325457 | None:intergenic |
| AGAGCACTGAAGATCTTGAG+AGG | 0.653858 | 5_3:+51325297 | Msa0816750:CDS |
| CGATCAAGATTATCAGAAGG+CGG | 0.656535 | 5_3:+51323968 | Msa0816750:CDS |
| TTGGAATAAGTTGTCAGACA+AGG | 0.660735 | 5_3:+51324766 | Msa0816750:CDS |
| AAAGCTCAGTGAGCTTACGA+TGG | 0.661623 | 5_3:-51322820 | None:intergenic |
| GAAAAGAGGAGGTTATTACC+AGG | 0.664435 | 5_3:+51323402 | Msa0816750:CDS |
| ACATGAGATTGAATCCAGAA+GGG | 0.670630 | 5_3:-51322847 | None:intergenic |
| AAAGAAAAGAAGAAACGGAG+AGG | 0.672313 | 5_3:+51324629 | Msa0816750:CDS |
| AAAGAAAAGAAGAAACGTAG+AGG | 0.673187 | 5_3:+51324964 | Msa0816750:CDS |
| AAAGCTTATCATCAGGACGT+AGG | 0.684875 | 5_3:+51324710 | Msa0816750:CDS |
| GGTGCTCCAATAGGACAGAG+TGG | 0.688534 | 5_3:+51324650 | Msa0816750:CDS |
| GTTGATCAAGAAAAGAAATG+GGG | 0.707030 | 5_3:+51323594 | Msa0816750:CDS |
| GAAGAGAGACCTATTGTGTG+TGG | 0.708143 | 5_3:+51325323 | Msa0816750:CDS |
| GAAGGCGGCAAAGATATCCG+AGG | 0.713448 | 5_3:+51323983 | Msa0816750:CDS |
| AAACGTAGAGGTGTTCCAAG+GGG | 0.716007 | 5_3:+51324976 | Msa0816750:CDS |
| TACGATGGAAGCTCTCAGTG+AGG | 0.727693 | 5_3:-51322805 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATTTTCATTTTCATA+AGG | - | chr5_3:51322722-51322741 | None:intergenic | 15.0% |
| !!! | AGTTTATAATTTTATTTGAC+TGG | + | chr5_3:51323797-51323816 | Msa0816750:intron | 15.0% |
| !! | TATATAGAAAGAAGAATTTA+AGG | - | chr5_3:51323895-51323914 | None:intergenic | 15.0% |
| !! | TTAAATTCTTCTTTCTATAT+AGG | + | chr5_3:51323894-51323913 | Msa0816750:intron | 15.0% |
| !!! | AAAGATATAGAATTTTAATG+AGG | + | chr5_3:51324032-51324051 | Msa0816750:intron | 15.0% |
| !! | TCATAAAAAAAATACAACTT+TGG | + | chr5_3:51324155-51324174 | Msa0816750:intron | 15.0% |
| !!! | TAAAATAAGAGTTTGAAATA+TGG | + | chr5_3:51324430-51324449 | Msa0816750:intron | 15.0% |
| !!! | AAATGAGATTTTTTCATCAA+TGG | + | chr5_3:51322739-51322758 | Msa0816750:CDS | 20.0% |
| !! | TTCATATTCATTAATTGATG+TGG | - | chr5_3:51323175-51323194 | None:intergenic | 20.0% |
| !! | CATCTTAGAAAATTCATATA+AGG | - | chr5_3:51323554-51323573 | None:intergenic | 20.0% |
| !!! | TATAATTTTATTTGACTGGT+CGG | + | chr5_3:51323801-51323820 | Msa0816750:intron | 20.0% |
| !!! | ATTGTATTATGTTTGCATTT+TGG | + | chr5_3:51323857-51323876 | Msa0816750:intron | 20.0% |
| !!! | TATGATACTTATTTTGAATC+AGG | - | chr5_3:51324140-51324159 | None:intergenic | 20.0% |
| !!! | ACAATCCAAATTTAGTTTAA+AGG | + | chr5_3:51324524-51324543 | Msa0816750:intron | 20.0% |
| !! | ACATGAAAAGTAATTAGAAA+TGG | - | chr5_3:51324882-51324901 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTTTCTTTGTTAT+TGG | - | chr5_3:51324959-51324978 | None:intergenic | 20.0% |
| ! | AATGAGAAAGAGATTAAAGA+AGG | - | chr5_3:51322892-51322911 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTTCTAGTCTAT+CGG | + | chr5_3:51323032-51323051 | Msa0816750:intron | 25.0% |
| ! | GTAAAACAACCTTATACTTT+CGG | + | chr5_3:51323238-51323257 | Msa0816750:intron | 25.0% |
| ! | ATTGCTAAAAACAATATACC+TGG | - | chr5_3:51323423-51323442 | None:intergenic | 25.0% |
| ! | AAGGATATATATTCATTCAG+AGG | - | chr5_3:51323535-51323554 | None:intergenic | 25.0% |
| ! | TGTTAATATGCTATTATTGC+AGG | + | chr5_3:51323572-51323591 | Msa0816750:intron | 25.0% |
| ! | CATTAATTGAGTTAAACTAG+TGG | - | chr5_3:51323946-51323965 | None:intergenic | 25.0% |
| !! | CACTAGTTTAACTCAATTAA+TGG | + | chr5_3:51323944-51323963 | Msa0816750:CDS | 25.0% |
| ! | AAATACATATAGTAGCAAAC+AGG | - | chr5_3:51324245-51324264 | None:intergenic | 25.0% |
| ! | TGTATTTATTATCTGCACTA+TGG | + | chr5_3:51324258-51324277 | Msa0816750:intron | 25.0% |
| !! | TTAGTAACTCAATGATTTGT+TGG | + | chr5_3:51324294-51324313 | Msa0816750:intron | 25.0% |
| !! | ATTTGTTGGAAGAGTTTAAA+GGG | + | chr5_3:51324308-51324327 | Msa0816750:intron | 25.0% |
| !! | ATCCAAATTTAGTTTAAAGG+TGG | + | chr5_3:51324527-51324546 | Msa0816750:intron | 25.0% |
| ! | AGAACAAAGAAAAGAAGAAA+CGG | + | chr5_3:51324624-51324643 | Msa0816750:CDS | 25.0% |
| ! | ATATAATATATTCCTCAAGC+AGG | + | chr5_3:51324673-51324692 | Msa0816750:CDS | 25.0% |
| !!! | TTCTTTTCTTTGTTATTGGT+GGG | - | chr5_3:51324955-51324974 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAATTACAAG+TGG | - | chr5_3:51325217-51325236 | None:intergenic | 25.0% |
| GAACATGCAAACGAAAAAAA+TGG | - | chr5_3:51322926-51322945 | None:intergenic | 30.0% | |
| ! | TAGTATACACCGAAAGTATA+AGG | - | chr5_3:51323250-51323269 | None:intergenic | 30.0% |
| TCAAATCTGCCAAATAGAAT+TGG | - | chr5_3:51323334-51323353 | None:intergenic | 30.0% | |
| ! | ACAAGTCAATGGATGATTTT+CGG | - | chr5_3:51323360-51323379 | None:intergenic | 30.0% |
| ! | AGGTTGATCAAGAAAAGAAA+TGG | + | chr5_3:51323592-51323611 | Msa0816750:intron | 30.0% |
| GGTTGATCAAGAAAAGAAAT+GGG | + | chr5_3:51323593-51323612 | Msa0816750:intron | 30.0% | |
| GTTGATCAAGAAAAGAAATG+GGG | + | chr5_3:51323594-51323613 | Msa0816750:CDS | 30.0% | |
| ! | TTAAACTAGTGGTTGAGTTT+TGG | - | chr5_3:51323935-51323954 | None:intergenic | 30.0% |
| AATTTGACTAAAGTAGTCCT+CGG | - | chr5_3:51324003-51324022 | None:intergenic | 30.0% | |
| GACTACTTTAGTCAAATTAC+AGG | + | chr5_3:51324005-51324024 | Msa0816750:CDS | 30.0% | |
| ATGAGGAAAACTGAATTCAT+CGG | + | chr5_3:51324049-51324068 | Msa0816750:intron | 30.0% | |
| CACAATTGATCAATTCACTA+TGG | + | chr5_3:51324186-51324205 | Msa0816750:intron | 30.0% | |
| ! | ATATAGTAGCAAACAGGTTT+TGG | - | chr5_3:51324239-51324258 | None:intergenic | 30.0% |
| !! | GATTTGTTGGAAGAGTTTAA+AGG | + | chr5_3:51324307-51324326 | Msa0816750:intron | 30.0% |
| AGTTTAAAGGGATTTGGATT+CGG | + | chr5_3:51324320-51324339 | Msa0816750:intron | 30.0% | |
| TCAAAATCTGCAAAGAAATC+TGG | - | chr5_3:51324395-51324414 | None:intergenic | 30.0% | |
| AGCCACCTTTAAACTAAATT+TGG | - | chr5_3:51324532-51324551 | None:intergenic | 30.0% | |
| TGGATATCAAGAATTTCAAG+TGG | + | chr5_3:51324583-51324602 | Msa0816750:CDS | 30.0% | |
| ! | TTCTTTTCTTTGTTCTTTGC+GGG | - | chr5_3:51324620-51324639 | None:intergenic | 30.0% |
| ! | CTTCTTTTCTTTGTTCTTTG+CGG | - | chr5_3:51324621-51324640 | None:intergenic | 30.0% |
| TGGAAGAAAAATCATAGAGA+TGG | + | chr5_3:51324733-51324752 | Msa0816750:CDS | 30.0% | |
| !!! | CTTCTTTTCTTTGTTATTGG+TGG | - | chr5_3:51324956-51324975 | None:intergenic | 30.0% |
| AAAGAAAAGAAGAAACGTAG+AGG | + | chr5_3:51324964-51324983 | Msa0816750:CDS | 30.0% | |
| AAAGCTGATCATCAGTTTAA+AGG | + | chr5_3:51325048-51325067 | Msa0816750:CDS | 30.0% | |
| !! | CATCAATAGCCTTGATTTTT+CGG | - | chr5_3:51325077-51325096 | None:intergenic | 30.0% |
| ! | TATCGTACCAATTTTTCCAA+GGG | - | chr5_3:51325117-51325136 | None:intergenic | 30.0% |
| ! | TTATCGTACCAATTTTTCCA+AGG | - | chr5_3:51325118-51325137 | None:intergenic | 30.0% |
| GATAATCATTCAAATCACCT+GGG | - | chr5_3:51325460-51325479 | None:intergenic | 30.0% | |
| AGGAAAGGAATTAGTAGTGA+TGG | + | chr5_3:51322688-51322707 | Msa0816750:CDS | 35.0% | |
| TTCATCAATGGAAGAAGCAA+AGG | + | chr5_3:51322751-51322770 | Msa0816750:CDS | 35.0% | |
| AGAAGCAAAGGAATTAGAGA+TGG | + | chr5_3:51322763-51322782 | Msa0816750:CDS | 35.0% | |
| AAAGGAATTAGAGATGGAGA+TGG | + | chr5_3:51322769-51322788 | Msa0816750:CDS | 35.0% | |
| CTCTCAGTGAGGATATAATA+TGG | - | chr5_3:51322797-51322816 | None:intergenic | 35.0% | |
| ACATGAGATTGAATCCAGAA+GGG | - | chr5_3:51322850-51322869 | None:intergenic | 35.0% | |
| AACATGAGATTGAATCCAGA+AGG | - | chr5_3:51322851-51322870 | None:intergenic | 35.0% | |
| GAGAAAGAGATTAAAGAAGG+AGG | - | chr5_3:51322889-51322908 | None:intergenic | 35.0% | |
| ! | TTCGTTTGCATGTTCTGTTT+TGG | + | chr5_3:51322931-51322950 | Msa0816750:intron | 35.0% |
| TGAAGAGAATGACATGCAAA+CGG | - | chr5_3:51322973-51322992 | None:intergenic | 35.0% | |
| ! | TTCTCTTCACTGTTCTGTTT+TGG | + | chr5_3:51322984-51323003 | Msa0816750:intron | 35.0% |
| CCAAATAGAATTGGAAAAGG+AGG | - | chr5_3:51323325-51323344 | None:intergenic | 35.0% | |
| ! | CCTCCTTTTCCAATTCTATT+TGG | + | chr5_3:51323322-51323341 | Msa0816750:intron | 35.0% |
| CTGCCAAATAGAATTGGAAA+AGG | - | chr5_3:51323328-51323347 | None:intergenic | 35.0% | |
| GTAAAACAGGTACAAGTCAA+TGG | - | chr5_3:51323371-51323390 | None:intergenic | 35.0% | |
| !! | TGACTTGTACCTGTTTTACT+TGG | + | chr5_3:51323372-51323391 | Msa0816750:CDS | 35.0% |
| !! | AGTTGTTTCTGCACTAAAAC+TGG | + | chr5_3:51323620-51323639 | Msa0816750:CDS | 35.0% |
| TTGAGACATTGTACTTCTAC+AGG | + | chr5_3:51323706-51323725 | Msa0816750:CDS | 35.0% | |
| TCTATATAGGTCCAGTTGAA+AGG | + | chr5_3:51323907-51323926 | Msa0816750:intron | 35.0% | |
| GATCAATTCACTATGGTCTA+TGG | + | chr5_3:51324193-51324212 | Msa0816750:intron | 35.0% | |
| TGGAAGAGTTTAAAGGGATT+TGG | + | chr5_3:51324314-51324333 | Msa0816750:intron | 35.0% | |
| !! | ACCAACGATATGGTTGATTT+TGG | - | chr5_3:51324351-51324370 | None:intergenic | 35.0% |
| AAAATCAACCATATCGTTGG+TGG | + | chr5_3:51324350-51324369 | Msa0816750:intron | 35.0% | |
| AAAGAAAAGAAGAAACGGAG+AGG | + | chr5_3:51324629-51324648 | Msa0816750:CDS | 35.0% | |
| TTATATCCACTCTGTCCTAT+TGG | - | chr5_3:51324659-51324678 | None:intergenic | 35.0% | |
| TCGACTTAAAGCTTATCATC+AGG | + | chr5_3:51324703-51324722 | Msa0816750:CDS | 35.0% | |
| TTGGAATAAGTTGTCAGACA+AGG | + | chr5_3:51324766-51324785 | Msa0816750:CDS | 35.0% | |
| TTTCATGTAGCCATATGAAG+AGG | + | chr5_3:51324894-51324913 | Msa0816750:intron | 35.0% | |
| TAAAGGTGACCGAAAAATCA+AGG | + | chr5_3:51325065-51325084 | Msa0816750:CDS | 35.0% | |
| AAATCAAGGCTATTGATGCT+TGG | + | chr5_3:51325079-51325098 | Msa0816750:CDS | 35.0% | |
| ! | ATCGTACCAATTTTTCCAAG+GGG | - | chr5_3:51325116-51325135 | None:intergenic | 35.0% |
| TTTCATGTAGCCATATGAAG+AGG | + | chr5_3:51324894-51324913 | Msa0816750:intron | 35.0% | |
| TTCATGCTTTCCTCTTCATA+TGG | - | chr5_3:51325242-51325261 | None:intergenic | 35.0% | |
| ! | AGAGGAAAGCATGAAGATAA+AGG | + | chr5_3:51325247-51325266 | Msa0816750:CDS | 35.0% |
| TTCAAATCACCTGGGAAAAA+GGG | - | chr5_3:51325452-51325471 | None:intergenic | 35.0% | |
| ATTCAAATCACCTGGGAAAA+AGG | - | chr5_3:51325453-51325472 | None:intergenic | 35.0% | |
| CGATAATCATTCAAATCACC+TGG | - | chr5_3:51325461-51325480 | None:intergenic | 35.0% | |
| ! | GGAATTAGTAGTGATGGAGA+TGG | + | chr5_3:51322694-51322713 | Msa0816750:CDS | 40.0% |
| !!! | CTTCACTGTTCTGTTTTGGT+TGG | + | chr5_3:51322988-51323007 | Msa0816750:intron | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5_3:51323375-51323394 | Msa0816750:CDS | 40.0% |
| GAAAAGAGGAGGTTATTACC+AGG | + | chr5_3:51323402-51323421 | Msa0816750:CDS | 40.0% | |
| !! | TAGATTCAAGCCTTGTTGGT+CGG | - | chr5_3:51323474-51323493 | None:intergenic | 40.0% |
| ! | TTGCTAGATTCAAGCCTTGT+TGG | - | chr5_3:51323478-51323497 | None:intergenic | 40.0% |
| GTTTCTGCACTAAAACTGGA+AGG | + | chr5_3:51323624-51323643 | Msa0816750:CDS | 40.0% | |
| TGGCAGCAATACAGGTTAAT+TGG | + | chr5_3:51323752-51323771 | Msa0816750:intron | 40.0% | |
| CAGCAATACAGGTTAATTGG+CGG | + | chr5_3:51323755-51323774 | Msa0816750:intron | 40.0% | |
| !!! | GAGTTTTGGTTCCTTTCAAC+TGG | - | chr5_3:51323921-51323940 | None:intergenic | 40.0% |
| GGACGATCAAGATTATCAGA+AGG | + | chr5_3:51323965-51323984 | Msa0816750:CDS | 40.0% | |
| CGATCAAGATTATCAGAAGG+CGG | + | chr5_3:51323968-51323987 | Msa0816750:CDS | 40.0% | |
| GCCAAAATCAACCATATCGT+TGG | + | chr5_3:51324347-51324366 | Msa0816750:intron | 40.0% | |
| CTTTCAAACCACCAACGATA+TGG | - | chr5_3:51324361-51324380 | None:intergenic | 40.0% | |
| AGTGGTAGTTCGATCAAGAT+GGG | - | chr5_3:51324461-51324480 | None:intergenic | 40.0% | |
| AAAGCTTATCATCAGGACGT+AGG | + | chr5_3:51324710-51324729 | Msa0816750:CDS | 40.0% | |
| TAGAGATGGCTATTGATGCT+TGG | + | chr5_3:51324747-51324766 | Msa0816750:CDS | 40.0% | |
| ! | TCGTACCAATTTTTCCAAGG+GGG | - | chr5_3:51325115-51325134 | None:intergenic | 40.0% |
| ! | CAAGATCTTCAGTGCTCTTT+TGG | - | chr5_3:51325295-51325314 | None:intergenic | 40.0% |
| TAGTAGTCACCACACACAAT+AGG | - | chr5_3:51325335-51325354 | None:intergenic | 40.0% | |
| CCAAAAGAGTAGTTTGACAG+AGG | - | chr5_3:51325374-51325393 | None:intergenic | 40.0% | |
| ! | CCTCTGTCAAACTACTCTTT+TGG | + | chr5_3:51325371-51325390 | Msa0816750:CDS | 40.0% |
| ACTGACAGAAAAAACATCCG+AGG | + | chr5_3:51325424-51325443 | Msa0816750:CDS | 40.0% | |
| ! | CGTTTGTTAGATTTGCCAAC+CGG | + | chr5_3:51325479-51325498 | Msa0816750:CDS | 40.0% |
| ! | GTTTGTTAGATTTGCCAACC+GGG | + | chr5_3:51325480-51325499 | Msa0816750:CDS | 40.0% |
| AAAGCTCAGTGAGCTTACGA+TGG | - | chr5_3:51322823-51322842 | None:intergenic | 45.0% | |
| ! | TCGTAAGCTCACTGAGCTTT+TGG | + | chr5_3:51322823-51322842 | Msa0816750:CDS | 45.0% |
| TCGTGACCTCCAAGTAAAAC+AGG | - | chr5_3:51323384-51323403 | None:intergenic | 45.0% | |
| TACTTGGAGGTCACGAAAAG+AGG | + | chr5_3:51323388-51323407 | Msa0816750:CDS | 45.0% | |
| TATGTAGCTTCCGACCAACA+AGG | + | chr5_3:51323461-51323480 | Msa0816750:intron | 45.0% | |
| !! | CCAGTTGCAATTTGAGTTGC+AGG | - | chr5_3:51323735-51323754 | None:intergenic | 45.0% |
| CCTGCAACTCAAATTGCAAC+TGG | + | chr5_3:51323732-51323751 | Msa0816750:CDS | 45.0% | |
| ATTGCAACTGGCAGCAATAC+AGG | + | chr5_3:51323744-51323763 | Msa0816750:CDS | 45.0% | |
| GTAGTTCGATCAAGATGGGT+TGG | - | chr5_3:51324457-51324476 | None:intergenic | 45.0% | |
| CAGTGGTAGTTCGATCAAGA+TGG | - | chr5_3:51324462-51324481 | None:intergenic | 45.0% | |
| TGATCGAACTACCACTGATG+TGG | + | chr5_3:51324465-51324484 | Msa0816750:intron | 45.0% | |
| TACGTAGTCAACCACATCAG+TGG | - | chr5_3:51324479-51324498 | None:intergenic | 45.0% | |
| GTTGACTACGTAGAGTCACA+CGG | + | chr5_3:51324487-51324506 | Msa0816750:intron | 45.0% | |
| TTGACTACGTAGAGTCACAC+GGG | + | chr5_3:51324488-51324507 | Msa0816750:intron | 45.0% | |
| GGTGGCTCATATGAATTCAG+AGG | + | chr5_3:51324545-51324564 | Msa0816750:intron | 45.0% | |
| !! | GAATTCAGAGGTGCTTATGC+AGG | + | chr5_3:51324557-51324576 | Msa0816750:intron | 45.0% |
| GTTGTCAGACAAGGAGAAAC+AGG | + | chr5_3:51324775-51324794 | Msa0816750:CDS | 45.0% | |
| TTCACGCTTGCCTCTTCATA+TGG | - | chr5_3:51324907-51324926 | None:intergenic | 45.0% | |
| AGAGGCAAGCGTGAAGATAA+AGG | + | chr5_3:51324912-51324931 | Msa0816750:CDS | 45.0% | |
| !! | AGAAACGTAGAGGTGTTCCA+AGG | + | chr5_3:51324974-51324993 | Msa0816750:CDS | 45.0% |
| !! | GAAACGTAGAGGTGTTCCAA+GGG | + | chr5_3:51324975-51324994 | Msa0816750:CDS | 45.0% |
| !! | AAACGTAGAGGTGTTCCAAG+GGG | + | chr5_3:51324976-51324995 | Msa0816750:CDS | 45.0% |
| GTCTAGCGCATTCATGTTTG+AGG | - | chr5_3:51325026-51325045 | None:intergenic | 45.0% | |
| GATGTCCCCCTTGGAAAAAT+TGG | + | chr5_3:51325107-51325126 | Msa0816750:CDS | 45.0% | |
| !! | AGAGCACTGAAGATCTTGAG+AGG | + | chr5_3:51325297-51325316 | Msa0816750:CDS | 45.0% |
| GAAGAGAGACCTATTGTGTG+TGG | + | chr5_3:51325323-51325342 | Msa0816750:CDS | 45.0% | |
| !!! | TTAAACTAATTTTTTTTTTA+TGG | + | chr5_3:51323271-51323290 | Msa0816750:intron | 5.0% |
| !! | AATAAAATTATAAACTAAAA+CGG | - | chr5_3:51323793-51323812 | None:intergenic | 5.0% |
| TACGATGGAAGCTCTCAGTG+AGG | - | chr5_3:51322808-51322827 | None:intergenic | 50.0% | |
| ! | ACTGAGCTTTTGGACCCTTC+TGG | + | chr5_3:51322833-51322852 | Msa0816750:CDS | 50.0% |
| TTGGAGGTCACGAAAAGAGG+AGG | + | chr5_3:51323391-51323410 | Msa0816750:CDS | 50.0% | |
| GGTGGTTTGAAAGAGATCCG+CGG | + | chr5_3:51324368-51324387 | Msa0816750:intron | 50.0% | |
| CTGCAAAGAAATCTGGACCG+CGG | - | chr5_3:51324388-51324407 | None:intergenic | 50.0% | |
| !! | AGAGGTGCTTATGCAGGAGT+TGG | + | chr5_3:51324563-51324582 | Msa0816750:intron | 50.0% |
| !! | AAACGGAGAGGTGCTCCAAT+AGG | + | chr5_3:51324641-51324660 | Msa0816750:CDS | 50.0% |
| GCTTATCATCAGGACGTAGG+TGG | + | chr5_3:51324713-51324732 | Msa0816750:CDS | 50.0% | |
| TATGCACTCTTCTGTCCCCT+TGG | - | chr5_3:51324994-51325013 | None:intergenic | 50.0% | |
| TTGGAAGATGATGTCCCCCT+TGG | + | chr5_3:51325098-51325117 | Msa0816750:CDS | 50.0% | |
| ! | CTCTTTTGGCAACAACGCAG+CGG | + | chr5_3:51325385-51325404 | Msa0816750:CDS | 50.0% |
| ACCTGGGAAAAAGGGATCCT+CGG | - | chr5_3:51325444-51325463 | None:intergenic | 50.0% | |
| GAAGGCGGCAAAGATATCCG+AGG | + | chr5_3:51323983-51324002 | Msa0816750:CDS | 55.0% | |
| GGTGCTCCAATAGGACAGAG+TGG | + | chr5_3:51324650-51324669 | Msa0816750:CDS | 55.0% | |
| ! | TTTTGGCAACAACGCAGCGG+TGG | + | chr5_3:51325388-51325407 | Msa0816750:CDS | 55.0% |
| ! | TCCGAGGATCCCTTTTTCCC+AGG | + | chr5_3:51325440-51325459 | Msa0816750:CDS | 55.0% |
| GTCGAGCACACTCCTGCTTG+AGG | - | chr5_3:51324688-51324707 | None:intergenic | 60.0% | |
| ! | CAACAACGCAGCGGTGGACT+TGG | + | chr5_3:51325394-51325413 | Msa0816750:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51322680 | 51325514 | 51322680 | ID=Msa0816750;Name=Msa0816750 |
| chr5_3 | mRNA | 51322680 | 51325514 | 51322680 | ID=Msa0816750-mRNA-1;Parent=Msa0816750;Name=Msa0816750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.71|1|1|1|7|0|421 |
| chr5_3 | exon | 51322680 | 51322867 | 51322680 | ID=Msa0816750-mRNA-1:exon:15436;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51323348 | 51323423 | 51323348 | ID=Msa0816750-mRNA-1:exon:15437;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51323594 | 51323765 | 51323594 | ID=Msa0816750-mRNA-1:exon:15438;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51323916 | 51324026 | 51323916 | ID=Msa0816750-mRNA-1:exon:15439;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51324579 | 51324796 | 51324579 | ID=Msa0816750-mRNA-1:exon:15440;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51324904 | 51325128 | 51324904 | ID=Msa0816750-mRNA-1:exon:15441;Parent=Msa0816750-mRNA-1 |
| chr5_3 | exon | 51325239 | 51325514 | 51325239 | ID=Msa0816750-mRNA-1:exon:15442;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51322680 | 51322867 | 51322680 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51323348 | 51323423 | 51323348 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51323594 | 51323765 | 51323594 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51323916 | 51324026 | 51323916 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51324579 | 51324796 | 51324579 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51324904 | 51325128 | 51324904 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| chr5_3 | CDS | 51325239 | 51325514 | 51325239 | ID=Msa0816750-mRNA-1:cds;Parent=Msa0816750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
