Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816850 | sp|Q9LHS8|LBD33_ARATH | 51.064 | 188 | 73 | 4 | 1 | 186 | 1 | 171 | 3.05e-57 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816850 | G7KGT3 | 96.875 | 192 | 5 | 1 | 1 | 191 | 1 | 192 | 2.73e-135 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0816850 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816850 | MtrunA17_Chr5g0435641 | 96.875 | 192 | 5 | 1 | 1 | 191 | 1 | 192 | 5.25e-139 | 385 |
| Msa0816850 | MtrunA17_Chr7g0261031 | 62.500 | 120 | 45 | 0 | 1 | 120 | 2 | 121 | 1.88e-52 | 167 |
| Msa0816850 | MtrunA17_Chr1g0184271 | 69.608 | 102 | 31 | 0 | 8 | 109 | 13 | 114 | 1.52e-49 | 160 |
| Msa0816850 | MtrunA17_Chr7g0260971 | 64.000 | 100 | 36 | 0 | 2 | 101 | 9 | 108 | 1.66e-45 | 149 |
| Msa0816850 | MtrunA17_Chr6g0460951 | 53.782 | 119 | 55 | 0 | 6 | 124 | 39 | 157 | 1.46e-44 | 147 |
| Msa0816850 | MtrunA17_Chr8g0351721 | 59.434 | 106 | 43 | 0 | 5 | 110 | 16 | 121 | 6.19e-44 | 145 |
| Msa0816850 | MtrunA17_Chr8g0351701 | 62.264 | 106 | 40 | 0 | 8 | 113 | 24 | 129 | 6.55e-44 | 145 |
| Msa0816850 | MtrunA17_Chr1g0184281 | 48.611 | 144 | 61 | 2 | 5 | 148 | 13 | 143 | 1.64e-42 | 141 |
| Msa0816850 | MtrunA17_Chr7g0245871 | 64.646 | 99 | 35 | 0 | 8 | 106 | 28 | 126 | 1.03e-41 | 140 |
| Msa0816850 | MtrunA17_Chr7g0245861 | 63.043 | 92 | 32 | 2 | 5 | 94 | 10 | 101 | 6.79e-38 | 127 |
| Msa0816850 | MtrunA17_Chr7g0227511 | 55.670 | 97 | 42 | 1 | 6 | 102 | 10 | 105 | 3.70e-34 | 119 |
| Msa0816850 | MtrunA17_Chr3g0114061 | 54.082 | 98 | 44 | 1 | 6 | 103 | 7 | 103 | 1.53e-33 | 117 |
| Msa0816850 | MtrunA17_Chr5g0437571 | 38.824 | 170 | 77 | 4 | 3 | 167 | 2 | 149 | 2.30e-33 | 117 |
| Msa0816850 | MtrunA17_Chr2g0311601 | 54.545 | 99 | 44 | 1 | 3 | 101 | 9 | 106 | 4.18e-33 | 116 |
| Msa0816850 | MtrunA17_Chr4g0058651 | 47.368 | 114 | 59 | 1 | 4 | 117 | 8 | 120 | 6.43e-33 | 116 |
| Msa0816850 | MtrunA17_Chr3g0106101 | 47.934 | 121 | 56 | 3 | 3 | 117 | 2 | 121 | 3.12e-32 | 114 |
| Msa0816850 | MtrunA17_Chr6g0449641 | 52.577 | 97 | 45 | 1 | 6 | 102 | 8 | 103 | 3.38e-32 | 113 |
| Msa0816850 | MtrunA17_Chr3g0117121 | 51.485 | 101 | 48 | 1 | 2 | 102 | 5 | 104 | 4.27e-32 | 114 |
| Msa0816850 | MtrunA17_Chr4g0043421 | 50.495 | 101 | 49 | 1 | 3 | 103 | 11 | 110 | 6.81e-32 | 113 |
| Msa0816850 | MtrunA17_Chr5g0437401 | 44.340 | 106 | 58 | 1 | 5 | 110 | 9 | 113 | 1.91e-30 | 109 |
| Msa0816850 | MtrunA17_Chr5g0402611 | 42.754 | 138 | 74 | 2 | 6 | 143 | 7 | 139 | 1.97e-30 | 113 |
| Msa0816850 | MtrunA17_Chr3g0097221 | 37.278 | 169 | 88 | 5 | 1 | 160 | 1 | 160 | 2.20e-30 | 112 |
| Msa0816850 | MtrunA17_Chr3g0129071 | 51.515 | 99 | 47 | 1 | 6 | 104 | 46 | 143 | 2.33e-30 | 111 |
| Msa0816850 | MtrunA17_Chr5g0438091 | 50.505 | 99 | 48 | 1 | 6 | 104 | 38 | 135 | 2.42e-30 | 110 |
| Msa0816850 | MtrunA17_Chr6g0449651 | 51.546 | 97 | 46 | 1 | 6 | 102 | 66 | 161 | 3.61e-30 | 109 |
| Msa0816850 | MtrunA17_Chr3g0113891 | 47.959 | 98 | 50 | 1 | 6 | 103 | 13 | 109 | 4.45e-30 | 109 |
| Msa0816850 | MtrunA17_Chr6g0460941 | 53.191 | 94 | 44 | 0 | 1 | 94 | 1 | 94 | 6.32e-30 | 105 |
| Msa0816850 | MtrunA17_Chr3g0115431 | 46.667 | 105 | 55 | 1 | 5 | 109 | 7 | 110 | 6.41e-30 | 109 |
| Msa0816850 | MtrunA17_Chr4g0030001 | 46.018 | 113 | 52 | 3 | 6 | 117 | 23 | 127 | 1.81e-27 | 102 |
| Msa0816850 | MtrunA17_Chr5g0432451 | 53.659 | 82 | 37 | 1 | 6 | 87 | 42 | 122 | 1.44e-25 | 98.6 |
| Msa0816850 | MtrunA17_Chr1g0200201 | 46.809 | 94 | 49 | 1 | 8 | 101 | 73 | 165 | 2.38e-25 | 98.2 |
| Msa0816850 | MtrunA17_Chr8g0353981 | 50.575 | 87 | 42 | 1 | 1 | 87 | 1 | 86 | 6.16e-25 | 97.1 |
| Msa0816850 | MtrunA17_Chr7g0225111 | 42.308 | 104 | 59 | 1 | 6 | 109 | 4 | 106 | 4.83e-24 | 91.7 |
| Msa0816850 | MtrunA17_Chr5g0444351 | 42.157 | 102 | 58 | 1 | 8 | 109 | 6 | 106 | 1.06e-23 | 91.7 |
| Msa0816850 | MtrunA17_Chr4g0059901 | 38.384 | 99 | 60 | 1 | 3 | 101 | 6 | 103 | 9.28e-20 | 84.0 |
| Msa0816850 | MtrunA17_Chr4g0040831 | 32.331 | 133 | 88 | 2 | 3 | 135 | 11 | 141 | 1.59e-19 | 82.0 |
| Msa0816850 | MtrunA17_Chr8g0342351 | 35.922 | 103 | 65 | 1 | 7 | 109 | 12 | 113 | 1.86e-19 | 83.2 |
| Msa0816850 | MtrunA17_Chr6g0452691 | 35.922 | 103 | 64 | 2 | 8 | 109 | 10 | 111 | 1.41e-17 | 76.6 |
| Msa0816850 | MtrunA17_Chr8g0374601 | 37.255 | 102 | 63 | 1 | 8 | 109 | 27 | 127 | 2.86e-17 | 77.8 |
| Msa0816850 | MtrunA17_Chr8g0374591 | 37.864 | 103 | 63 | 1 | 8 | 110 | 9 | 110 | 2.91e-17 | 74.3 |
| Msa0816850 | MtrunA17_Chr6g0452671 | 39.506 | 81 | 48 | 1 | 7 | 87 | 11 | 90 | 3.30e-16 | 73.6 |
| Msa0816850 | MtrunA17_Chr6g0452661 | 32.381 | 105 | 69 | 2 | 6 | 109 | 8 | 111 | 6.64e-16 | 73.6 |
| Msa0816850 | MtrunA17_Chr2g0330201 | 32.323 | 99 | 66 | 1 | 3 | 101 | 15 | 112 | 6.74e-16 | 73.9 |
| Msa0816850 | MtrunA17_Chr5g0439111 | 33.654 | 104 | 67 | 2 | 7 | 109 | 9 | 111 | 2.40e-14 | 68.9 |
| Msa0816850 | MtrunA17_Chr8g0374581 | 35.789 | 95 | 59 | 2 | 8 | 101 | 9 | 102 | 1.18e-13 | 67.0 |
| Msa0816850 | MtrunA17_Chr4g0055441 | 30.097 | 103 | 70 | 2 | 8 | 109 | 3 | 104 | 4.40e-13 | 63.9 |
| Msa0816850 | MtrunA17_Chr4g0046201 | 31.111 | 90 | 61 | 1 | 6 | 95 | 5 | 93 | 1.74e-12 | 64.3 |
| Msa0816850 | MtrunA17_Chr2g0326041 | 52.083 | 48 | 22 | 1 | 6 | 53 | 32 | 78 | 1.91e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816850 | AT5G06080.1 | 51.064 | 188 | 73 | 4 | 1 | 186 | 1 | 171 | 3.10e-58 | 181 |
| Msa0816850 | AT3G58190.1 | 68.868 | 106 | 33 | 0 | 8 | 113 | 12 | 117 | 1.15e-50 | 163 |
| Msa0816850 | AT2G42440.1 | 60.656 | 122 | 43 | 1 | 1 | 117 | 1 | 122 | 1.34e-49 | 161 |
| Msa0816850 | AT2G42430.1 | 45.304 | 181 | 76 | 3 | 3 | 166 | 11 | 185 | 5.92e-47 | 154 |
| Msa0816850 | AT4G00210.1 | 64.000 | 100 | 36 | 0 | 2 | 101 | 6 | 105 | 3.20e-46 | 152 |
| Msa0816850 | AT3G03760.1 | 60.714 | 112 | 44 | 0 | 6 | 117 | 50 | 161 | 3.34e-46 | 153 |
| Msa0816850 | AT2G31310.1 | 62.500 | 104 | 39 | 0 | 1 | 104 | 1 | 104 | 7.00e-45 | 147 |
| Msa0816850 | AT2G45420.1 | 64.356 | 101 | 36 | 0 | 10 | 110 | 40 | 140 | 4.40e-43 | 145 |
| Msa0816850 | AT4G00220.1 | 60.396 | 101 | 40 | 0 | 10 | 110 | 20 | 120 | 6.66e-41 | 138 |
| Msa0816850 | AT2G45410.1 | 59.783 | 92 | 37 | 0 | 10 | 101 | 19 | 110 | 3.42e-38 | 130 |
| Msa0816850 | AT3G27650.1 | 55.670 | 97 | 42 | 1 | 6 | 102 | 38 | 133 | 3.11e-34 | 119 |
| Msa0816850 | AT5G63090.4 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.19e-33 | 117 |
| Msa0816850 | AT5G63090.3 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.19e-33 | 117 |
| Msa0816850 | AT5G63090.2 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.19e-33 | 117 |
| Msa0816850 | AT5G63090.1 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.19e-33 | 117 |
| Msa0816850 | AT2G30130.1 | 51.923 | 104 | 48 | 2 | 1 | 103 | 1 | 103 | 3.38e-32 | 115 |
| Msa0816850 | AT1G31320.1 | 53.261 | 92 | 42 | 1 | 3 | 94 | 9 | 99 | 6.13e-31 | 111 |
| Msa0816850 | AT5G66870.1 | 50.000 | 102 | 50 | 1 | 1 | 102 | 1 | 101 | 1.06e-29 | 111 |
| Msa0816850 | AT2G28500.1 | 45.133 | 113 | 56 | 2 | 6 | 113 | 54 | 165 | 2.25e-29 | 108 |
| Msa0816850 | AT2G30340.2 | 51.515 | 99 | 47 | 1 | 6 | 104 | 52 | 149 | 3.53e-29 | 109 |
| Msa0816850 | AT2G30340.1 | 51.515 | 99 | 47 | 1 | 6 | 104 | 51 | 148 | 4.31e-29 | 109 |
| Msa0816850 | AT3G11090.1 | 44.037 | 109 | 59 | 2 | 6 | 113 | 10 | 117 | 7.19e-29 | 105 |
| Msa0816850 | AT1G07900.1 | 45.536 | 112 | 53 | 2 | 6 | 117 | 32 | 135 | 8.61e-29 | 106 |
| Msa0816850 | AT3G26660.1 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 1.12e-28 | 103 |
| Msa0816850 | AT1G16530.1 | 38.462 | 143 | 84 | 3 | 6 | 147 | 13 | 152 | 1.39e-28 | 105 |
| Msa0816850 | AT3G26620.1 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 1.65e-28 | 103 |
| Msa0816850 | AT2G23660.2 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.78e-27 | 103 |
| Msa0816850 | AT2G23660.3 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.78e-27 | 103 |
| Msa0816850 | AT2G23660.1 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.78e-27 | 103 |
| Msa0816850 | AT1G65620.1 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.50e-26 | 99.4 |
| Msa0816850 | AT1G65620.4 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.50e-26 | 99.4 |
| Msa0816850 | AT1G65620.3 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.50e-26 | 99.4 |
| Msa0816850 | AT1G65620.5 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.50e-26 | 99.4 |
| Msa0816850 | AT1G65620.2 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.50e-26 | 99.4 |
| Msa0816850 | AT2G40470.2 | 51.220 | 82 | 39 | 1 | 6 | 87 | 19 | 99 | 5.44e-25 | 96.7 |
| Msa0816850 | AT2G40470.1 | 51.220 | 82 | 39 | 1 | 6 | 87 | 44 | 124 | 7.81e-25 | 97.1 |
| Msa0816850 | AT3G50510.1 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 3.89e-24 | 94.4 |
| Msa0816850 | AT3G50510.2 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 3.89e-24 | 94.4 |
| Msa0816850 | AT3G13850.1 | 36.893 | 103 | 64 | 1 | 7 | 109 | 36 | 137 | 7.18e-20 | 84.7 |
| Msa0816850 | AT5G35900.1 | 39.796 | 98 | 56 | 3 | 6 | 102 | 4 | 99 | 5.92e-18 | 78.6 |
| Msa0816850 | AT3G47870.1 | 32.075 | 106 | 71 | 1 | 3 | 108 | 32 | 136 | 1.32e-17 | 79.3 |
| Msa0816850 | AT1G06280.1 | 36.842 | 76 | 47 | 1 | 7 | 82 | 24 | 98 | 4.19e-16 | 73.6 |
| Msa0816850 | AT1G72980.1 | 31.683 | 101 | 68 | 1 | 3 | 103 | 9 | 108 | 9.72e-14 | 67.4 |
| Msa0816850 | AT4G22700.1 | 33.333 | 96 | 61 | 2 | 8 | 102 | 6 | 99 | 4.56e-12 | 62.4 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCAGTGCATAAGGTTTA+TGG | 0.160867 | 5_3:-51619426 | Msa0816850:CDS |
| CGCATGCAAGATCCTATTTA+TGG | 0.202738 | 5_3:-51619315 | Msa0816850:CDS |
| CTTTGGAAAATGACAGGATT+TGG | 0.236785 | 5_3:-51619546 | None:intergenic |
| ATGATCCAAAACTTTGATTA+TGG | 0.255926 | 5_3:+51618488 | None:intergenic |
| TATTACCATAATCAAAGTTT+TGG | 0.272555 | 5_3:-51618493 | Msa0816850:CDS |
| CAAGAGGAGATAGATATTCT+TGG | 0.321470 | 5_3:-51618598 | Msa0816850:CDS |
| GGATTTCCAGAGCCTTTATA+TGG | 0.325475 | 5_3:-51618433 | Msa0816850:CDS |
| TCTGGAAATCCTTGTGCATT+AGG | 0.337625 | 5_3:+51618445 | None:intergenic |
| ACATTAGAGAAGTTCTTATC+AGG | 0.342216 | 5_3:-51618394 | Msa0816850:CDS |
| TGAGCAACACAACCATAAAT+AGG | 0.353770 | 5_3:+51619303 | None:intergenic |
| GCACCAATGAACTCAAATAA+TGG | 0.356387 | 5_3:-51618523 | Msa0816850:CDS |
| CACCCTTGGTTCAAGCATAA+TGG | 0.370662 | 5_3:-51618346 | Msa0816850:CDS |
| GTTCCATTATTTGAGTTCAT+TGG | 0.371818 | 5_3:+51618520 | None:intergenic |
| GCCTGTTCATAGGAGAAGTA+TGG | 0.380890 | 5_3:+51619462 | None:intergenic |
| GAGTTGGAATCACCATATAA+AGG | 0.394155 | 5_3:+51618421 | None:intergenic |
| TCCATACTTCTCCTATGAAC+AGG | 0.425422 | 5_3:-51619463 | Msa0816850:CDS |
| CTTCTCTAATGTATTTGAGT+TGG | 0.427053 | 5_3:+51618405 | None:intergenic |
| CACTATATCTTATGAAGCCT+TGG | 0.435812 | 5_3:-51619340 | Msa0816850:CDS |
| ATGAGTTGAAGCCTGTTCAT+AGG | 0.437710 | 5_3:+51619452 | None:intergenic |
| GAATCACCATATAAAGGCTC+TGG | 0.448083 | 5_3:+51618427 | None:intergenic |
| CACTAGCACACTTTCTCCTT+AGG | 0.465254 | 5_3:+51619499 | None:intergenic |
| AGGGCTTCTTGAACCACCCT+TGG | 0.469455 | 5_3:-51618360 | Msa0816850:CDS |
| ATAAAACTTTGGAAAATGAC+AGG | 0.478814 | 5_3:-51619552 | None:intergenic |
| TATCTATGCATTGCAACATC+AGG | 0.488764 | 5_3:-51619280 | Msa0816850:intron |
| GTGGAGCATGCAAGTTCCTA+AGG | 0.513337 | 5_3:-51619515 | Msa0816850:CDS |
| CTCCATTATGCTTGAACCAA+GGG | 0.523653 | 5_3:+51618344 | None:intergenic |
| AGGATCTTGCATGCGAGCCA+AGG | 0.545581 | 5_3:+51619323 | None:intergenic |
| AGATATTCTTGGAAGTGTAA+TGG | 0.550072 | 5_3:-51618587 | Msa0816850:CDS |
| TCTCCATTATGCTTGAACCA+AGG | 0.563541 | 5_3:+51618343 | None:intergenic |
| TAATGGAGACATGAAGAACT+AGG | 0.571172 | 5_3:-51618329 | None:intergenic |
| ACAGGATTTGGCTCATCATG+TGG | 0.589293 | 5_3:-51619534 | Msa0816850:CDS |
| CATTATGCTTGAACCAAGGG+TGG | 0.607660 | 5_3:+51618347 | None:intergenic |
| AGTGTTAGTGTTGTGAATTG+TGG | 0.611640 | 5_3:-51618556 | Msa0816850:CDS |
| GCAGGTTGCTAGCTTGCAAG+AGG | 0.615316 | 5_3:-51618614 | Msa0816850:intron |
| CTTATCAGGAATTGATCAAG+AGG | 0.617949 | 5_3:-51618380 | Msa0816850:CDS |
| TTATCAGGAATTGATCAAGA+GGG | 0.643489 | 5_3:-51618379 | Msa0816850:CDS |
| GGCTTCATAAGATATAGTGA+TGG | 0.646623 | 5_3:+51619344 | None:intergenic |
| GAGCTAATTCCTAATGCACA+AGG | 0.651993 | 5_3:-51618454 | Msa0816850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACACAAAAAAAAAAATTT+AGG | - | chr5_3:51619143-51619162 | Msa0816850:intron | 15.0% |
| !! | CAACACAAAAAAAAAAATTT+AGG | - | chr5_3:51619143-51619162 | Msa0816850:intron | 15.0% |
| !! | AAAATGTGGTAAAATATGAT+CGG | - | chr5_3:51618674-51618693 | Msa0816850:intron | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | - | chr5_3:51618922-51618941 | Msa0816850:intron | 20.0% |
| !! | ATTCAATTCATTTGTAAGTA+AGG | + | chr5_3:51619064-51619083 | None:intergenic | 20.0% |
| !!! | TATTACCATAATCAAAGTTT+TGG | - | chr5_3:51619374-51619393 | Msa0816850:CDS | 20.0% |
| !! | AAAATGTGGTAAAATATGAT+CGG | - | chr5_3:51618674-51618693 | Msa0816850:intron | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | - | chr5_3:51618922-51618941 | Msa0816850:intron | 20.0% |
| !! | ATTCAATTCATTTGTAAGTA+AGG | + | chr5_3:51619064-51619083 | None:intergenic | 20.0% |
| !!! | TATTACCATAATCAAAGTTT+TGG | - | chr5_3:51619374-51619393 | Msa0816850:CDS | 20.0% |
| !! | GATCATATTTTACCACATTT+TGG | + | chr5_3:51618675-51618694 | None:intergenic | 25.0% |
| !!! | GTGCAAAAATTTTAAAACCT+TGG | + | chr5_3:51618804-51618823 | None:intergenic | 25.0% |
| ! | AATGGATACTAGAAATATAG+CGG | + | chr5_3:51618961-51618980 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | + | chr5_3:51618979-51618998 | None:intergenic | 25.0% |
| ! | AATTCATTTGTAAGTAAGGA+TGG | + | chr5_3:51619060-51619079 | None:intergenic | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | + | chr5_3:51619382-51619401 | None:intergenic | 25.0% |
| !! | GATCATATTTTACCACATTT+TGG | + | chr5_3:51618675-51618694 | None:intergenic | 25.0% |
| !!! | GTGCAAAAATTTTAAAACCT+TGG | + | chr5_3:51618804-51618823 | None:intergenic | 25.0% |
| ! | AATGGATACTAGAAATATAG+CGG | + | chr5_3:51618961-51618980 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | + | chr5_3:51618979-51618998 | None:intergenic | 25.0% |
| ! | AATTCATTTGTAAGTAAGGA+TGG | + | chr5_3:51619060-51619079 | None:intergenic | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | + | chr5_3:51619382-51619401 | None:intergenic | 25.0% |
| !! | GCATCACTTCTATTTTGAAT+AGG | + | chr5_3:51618501-51618520 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+TGG | - | chr5_3:51618660-51618679 | Msa0816850:intron | 30.0% | |
| !!! | ACAACCATGGTTTTAAATTG+TGG | + | chr5_3:51618771-51618790 | None:intergenic | 30.0% |
| !!! | ATTTTAAAACCTTGGTTGTG+CGG | + | chr5_3:51618796-51618815 | None:intergenic | 30.0% |
| ATATCCATATAATGCGACTT+TGG | - | chr5_3:51618853-51618872 | Msa0816850:intron | 30.0% | |
| TTTCTTATGTGTAATTGTGC+AGG | - | chr5_3:51619235-51619254 | Msa0816850:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | - | chr5_3:51619280-51619299 | Msa0816850:intron | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | + | chr5_3:51619350-51619369 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | - | chr5_3:51619385-51619404 | Msa0816850:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | - | chr5_3:51619391-51619410 | Msa0816850:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | + | chr5_3:51619465-51619484 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | - | chr5_3:51619473-51619492 | Msa0816850:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | - | chr5_3:51619488-51619507 | Msa0816850:CDS | 30.0% | |
| !! | GCATCACTTCTATTTTGAAT+AGG | + | chr5_3:51618501-51618520 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+TGG | - | chr5_3:51618660-51618679 | Msa0816850:intron | 30.0% | |
| !!! | ACAACCATGGTTTTAAATTG+TGG | + | chr5_3:51618771-51618790 | None:intergenic | 30.0% |
| !!! | ATTTTAAAACCTTGGTTGTG+CGG | + | chr5_3:51618796-51618815 | None:intergenic | 30.0% |
| ATATCCATATAATGCGACTT+TGG | - | chr5_3:51618853-51618872 | Msa0816850:intron | 30.0% | |
| TTTCTTATGTGTAATTGTGC+AGG | - | chr5_3:51619235-51619254 | Msa0816850:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | - | chr5_3:51619280-51619299 | Msa0816850:intron | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | + | chr5_3:51619350-51619369 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | - | chr5_3:51619385-51619404 | Msa0816850:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | - | chr5_3:51619391-51619410 | Msa0816850:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | + | chr5_3:51619465-51619484 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | - | chr5_3:51619473-51619492 | Msa0816850:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | - | chr5_3:51619488-51619507 | Msa0816850:CDS | 30.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | - | chr5_3:51618434-51618453 | Msa0816850:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | + | chr5_3:51618526-51618545 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | - | chr5_3:51618527-51618546 | Msa0816850:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | + | chr5_3:51618567-51618586 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | - | chr5_3:51618587-51618606 | Msa0816850:CDS | 35.0% | |
| TTGCAATTGTAATGCCATTG+TGG | - | chr5_3:51618708-51618727 | Msa0816850:intron | 35.0% | |
| AATCTAACTAGCATCCACAA+TGG | + | chr5_3:51618725-51618744 | None:intergenic | 35.0% | |
| ! | CAGACCACAATTTAAAACCA+TGG | - | chr5_3:51618764-51618783 | Msa0816850:intron | 35.0% |
| TTGCACAATCGTTGATATTG+TGG | - | chr5_3:51618818-51618837 | Msa0816850:intron | 35.0% | |
| GTTGATATTGTGGAAAGTTG+TGG | - | chr5_3:51618828-51618847 | Msa0816850:intron | 35.0% | |
| GGCCTAAAAAATTCTCTACA+CGG | - | chr5_3:51619164-51619183 | Msa0816850:intron | 35.0% | |
| CATGACCTACACATAATTGT+GGG | - | chr5_3:51619188-51619207 | Msa0816850:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | - | chr5_3:51619189-51619208 | Msa0816850:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | - | chr5_3:51619269-51619288 | Msa0816850:intron | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | - | chr5_3:51619311-51619330 | Msa0816850:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | - | chr5_3:51619344-51619363 | Msa0816850:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | + | chr5_3:51619449-51619468 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | - | chr5_3:51619487-51619506 | Msa0816850:CDS | 35.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | - | chr5_3:51618434-51618453 | Msa0816850:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | + | chr5_3:51618526-51618545 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | - | chr5_3:51618527-51618546 | Msa0816850:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | + | chr5_3:51618567-51618586 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | - | chr5_3:51618587-51618606 | Msa0816850:CDS | 35.0% | |
| TTGCAATTGTAATGCCATTG+TGG | - | chr5_3:51618708-51618727 | Msa0816850:intron | 35.0% | |
| AATCTAACTAGCATCCACAA+TGG | + | chr5_3:51618725-51618744 | None:intergenic | 35.0% | |
| ! | CAGACCACAATTTAAAACCA+TGG | - | chr5_3:51618764-51618783 | Msa0816850:intron | 35.0% |
| TTGCACAATCGTTGATATTG+TGG | - | chr5_3:51618818-51618837 | Msa0816850:intron | 35.0% | |
| GTTGATATTGTGGAAAGTTG+TGG | - | chr5_3:51618828-51618847 | Msa0816850:intron | 35.0% | |
| GGCCTAAAAAATTCTCTACA+CGG | - | chr5_3:51619164-51619183 | Msa0816850:intron | 35.0% | |
| CATGACCTACACATAATTGT+GGG | - | chr5_3:51619188-51619207 | Msa0816850:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | - | chr5_3:51619189-51619208 | Msa0816850:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | - | chr5_3:51619269-51619288 | Msa0816850:intron | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | - | chr5_3:51619311-51619330 | Msa0816850:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | - | chr5_3:51619344-51619363 | Msa0816850:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | + | chr5_3:51619449-51619468 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | - | chr5_3:51619487-51619506 | Msa0816850:CDS | 35.0% | |
| TCCATACTTCTCCTATGAAC+AGG | - | chr5_3:51618404-51618423 | Msa0816850:CDS | 40.0% | |
| ! | ATGAGTTGAAGCCTGTTCAT+AGG | + | chr5_3:51618418-51618437 | None:intergenic | 40.0% |
| TCAGCAGTGCATAAGGTTTA+TGG | - | chr5_3:51618441-51618460 | Msa0816850:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | - | chr5_3:51618552-51618571 | Msa0816850:CDS | 40.0% | |
| GTGGTAAAATATGATCGGTG+TGG | - | chr5_3:51618679-51618698 | Msa0816850:intron | 40.0% | |
| TGTGGATGCTAGTTAGATTG+TGG | - | chr5_3:51618726-51618745 | Msa0816850:intron | 40.0% | |
| ! | GTGGTCTGCAACATCAATTT+TGG | + | chr5_3:51618752-51618771 | None:intergenic | 40.0% |
| TGCACCAAAGTCGCATTATA+TGG | + | chr5_3:51618860-51618879 | None:intergenic | 40.0% | |
| ! | ATGCGACTTTGGTGCATATT+TGG | - | chr5_3:51618864-51618883 | Msa0816850:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | + | chr5_3:51619038-51619057 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | + | chr5_3:51619046-51619065 | None:intergenic | 40.0% | |
| !!! | GGCCGTGTAGAGAATTTTTT+AGG | + | chr5_3:51619169-51619188 | None:intergenic | 40.0% |
| CCACAATTATGTGTAGGTCA+TGG | + | chr5_3:51619190-51619209 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | - | chr5_3:51619187-51619206 | Msa0816850:intron | 40.0% | |
| TACACCCCACAATTATGTGT+AGG | + | chr5_3:51619196-51619215 | None:intergenic | 40.0% | |
| CACATAATTGTGGGGTGTAA+TGG | - | chr5_3:51619197-51619216 | Msa0816850:intron | 40.0% | |
| GAGCTAATTCCTAATGCACA+AGG | - | chr5_3:51619413-51619432 | Msa0816850:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | + | chr5_3:51619425-51619444 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | - | chr5_3:51619434-51619453 | Msa0816850:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | + | chr5_3:51619443-51619462 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | + | chr5_3:51619526-51619545 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | + | chr5_3:51619527-51619546 | None:intergenic | 40.0% | |
| TCCATACTTCTCCTATGAAC+AGG | - | chr5_3:51618404-51618423 | Msa0816850:CDS | 40.0% | |
| ! | ATGAGTTGAAGCCTGTTCAT+AGG | + | chr5_3:51618418-51618437 | None:intergenic | 40.0% |
| TCAGCAGTGCATAAGGTTTA+TGG | - | chr5_3:51618441-51618460 | Msa0816850:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | - | chr5_3:51618552-51618571 | Msa0816850:CDS | 40.0% | |
| GTGGTAAAATATGATCGGTG+TGG | - | chr5_3:51618679-51618698 | Msa0816850:intron | 40.0% | |
| TGTGGATGCTAGTTAGATTG+TGG | - | chr5_3:51618726-51618745 | Msa0816850:intron | 40.0% | |
| ! | GTGGTCTGCAACATCAATTT+TGG | + | chr5_3:51618752-51618771 | None:intergenic | 40.0% |
| TGCACCAAAGTCGCATTATA+TGG | + | chr5_3:51618860-51618879 | None:intergenic | 40.0% | |
| ! | ATGCGACTTTGGTGCATATT+TGG | - | chr5_3:51618864-51618883 | Msa0816850:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | + | chr5_3:51619038-51619057 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | + | chr5_3:51619046-51619065 | None:intergenic | 40.0% | |
| !!! | GGCCGTGTAGAGAATTTTTT+AGG | + | chr5_3:51619169-51619188 | None:intergenic | 40.0% |
| CCACAATTATGTGTAGGTCA+TGG | + | chr5_3:51619190-51619209 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | - | chr5_3:51619187-51619206 | Msa0816850:intron | 40.0% | |
| TACACCCCACAATTATGTGT+AGG | + | chr5_3:51619196-51619215 | None:intergenic | 40.0% | |
| CACATAATTGTGGGGTGTAA+TGG | - | chr5_3:51619197-51619216 | Msa0816850:intron | 40.0% | |
| GAGCTAATTCCTAATGCACA+AGG | - | chr5_3:51619413-51619432 | Msa0816850:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | + | chr5_3:51619425-51619444 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | - | chr5_3:51619434-51619453 | Msa0816850:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | + | chr5_3:51619443-51619462 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | + | chr5_3:51619526-51619545 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | + | chr5_3:51619527-51619546 | None:intergenic | 40.0% | |
| ! | ACAGGATTTGGCTCATCATG+TGG | - | chr5_3:51618333-51618352 | Msa0816850:CDS | 45.0% |
| CACTAGCACACTTTCTCCTT+AGG | + | chr5_3:51618371-51618390 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | + | chr5_3:51618408-51618427 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | + | chr5_3:51619035-51619054 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | - | chr5_3:51619032-51619051 | Msa0816850:intron | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | + | chr5_3:51619523-51619542 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | - | chr5_3:51619521-51619540 | Msa0816850:CDS | 45.0% | |
| ! | ACAGGATTTGGCTCATCATG+TGG | - | chr5_3:51618333-51618352 | Msa0816850:CDS | 45.0% |
| CACTAGCACACTTTCTCCTT+AGG | + | chr5_3:51618371-51618390 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | + | chr5_3:51618408-51618427 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | + | chr5_3:51619035-51619054 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | - | chr5_3:51619032-51619051 | Msa0816850:intron | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | + | chr5_3:51619523-51619542 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | - | chr5_3:51619521-51619540 | Msa0816850:CDS | 45.0% | |
| GTGGAGCATGCAAGTTCCTA+AGG | - | chr5_3:51618352-51618371 | Msa0816850:CDS | 50.0% | |
| TTGTGGGGTGTAATGGCAAG+AGG | - | chr5_3:51619204-51619223 | Msa0816850:intron | 50.0% | |
| GTGGAGCATGCAAGTTCCTA+AGG | - | chr5_3:51618352-51618371 | Msa0816850:CDS | 50.0% | |
| TTGTGGGGTGTAATGGCAAG+AGG | - | chr5_3:51619204-51619223 | Msa0816850:intron | 50.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | + | chr5_3:51618547-51618566 | None:intergenic | 55.0% | |
| TGGTTGTGCGGTCACAACCA+TGG | + | chr5_3:51618784-51618803 | None:intergenic | 55.0% | |
| TGGTTGTGACCGCACAACCA+AGG | - | chr5_3:51618784-51618803 | Msa0816850:intron | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | - | chr5_3:51619253-51619272 | Msa0816850:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | - | chr5_3:51619507-51619526 | Msa0816850:CDS | 55.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | + | chr5_3:51618547-51618566 | None:intergenic | 55.0% | |
| TGGTTGTGCGGTCACAACCA+TGG | + | chr5_3:51618784-51618803 | None:intergenic | 55.0% | |
| TGGTTGTGACCGCACAACCA+AGG | - | chr5_3:51618784-51618803 | Msa0816850:intron | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | - | chr5_3:51619253-51619272 | Msa0816850:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | - | chr5_3:51619507-51619526 | Msa0816850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51618330 | 51619559 | 51618330 | ID=Msa0816850;Name=Msa0816850 |
| chr5_3 | mRNA | 51618330 | 51619559 | 51618330 | ID=Msa0816850-mRNA-1;Parent=Msa0816850;Name=Msa0816850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|193 |
| chr5_3 | exon | 51619281 | 51619559 | 51619281 | ID=Msa0816850-mRNA-1:exon:15504;Parent=Msa0816850-mRNA-1 |
| chr5_3 | exon | 51618330 | 51618632 | 51618330 | ID=Msa0816850-mRNA-1:exon:15503;Parent=Msa0816850-mRNA-1 |
| chr5_3 | CDS | 51619281 | 51619559 | 51619281 | ID=Msa0816850-mRNA-1:cds;Parent=Msa0816850-mRNA-1 |
| chr5_3 | CDS | 51618330 | 51618632 | 51618330 | ID=Msa0816850-mRNA-1:cds;Parent=Msa0816850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
