Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817140 | XP_003612086.1 | 88.415 | 328 | 20 | 8 | 1 | 315 | 1 | 323 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817140 | sp|Q9XGX0|SHI_ARATH | 48.179 | 357 | 117 | 17 | 1 | 315 | 1 | 331 | 4.46e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817140 | G7KGA2 | 88.415 | 328 | 20 | 8 | 1 | 315 | 1 | 323 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0817140 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817140 | MtrunA17_Chr5g0404781 | 88.415 | 328 | 20 | 8 | 1 | 315 | 1 | 323 | 0.0 | 521 |
| Msa0817140 | MtrunA17_Chr8g0372461 | 54.335 | 346 | 112 | 12 | 1 | 315 | 1 | 331 | 3.24e-94 | 282 |
| Msa0817140 | MtrunA17_Chr3g0142171 | 42.357 | 314 | 151 | 11 | 1 | 310 | 1 | 288 | 1.70e-61 | 197 |
| Msa0817140 | MtrunA17_Chr1g0155791 | 52.609 | 230 | 84 | 7 | 100 | 315 | 120 | 338 | 1.09e-59 | 194 |
| Msa0817140 | MtrunA17_Chr5g0441921 | 50.943 | 159 | 54 | 4 | 102 | 242 | 124 | 276 | 2.66e-40 | 144 |
| Msa0817140 | MtrunA17_Chr4g0035591 | 43.478 | 161 | 71 | 1 | 84 | 244 | 2 | 142 | 5.60e-40 | 139 |
| Msa0817140 | MtrunA17_Chr3g0082511 | 43.125 | 160 | 75 | 3 | 102 | 247 | 134 | 291 | 8.03e-38 | 137 |
| Msa0817140 | MtrunA17_Chr8g0353111 | 43.452 | 168 | 75 | 3 | 102 | 250 | 124 | 290 | 8.92e-35 | 129 |
| Msa0817140 | MtrunA17_Chr2g0281741 | 32.231 | 121 | 52 | 5 | 22 | 136 | 88 | 184 | 6.25e-14 | 69.3 |
| Msa0817140 | MtrunA17_Chr0c01g0489181 | 29.752 | 121 | 56 | 4 | 22 | 136 | 4 | 101 | 4.00e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817140 | AT5G66350.1 | 48.179 | 357 | 117 | 17 | 1 | 315 | 1 | 331 | 4.53e-75 | 234 |
| Msa0817140 | AT3G51060.1 | 43.229 | 384 | 135 | 13 | 1 | 315 | 1 | 370 | 1.88e-74 | 233 |
| Msa0817140 | AT5G66350.3 | 48.256 | 344 | 112 | 16 | 1 | 302 | 1 | 320 | 1.76e-72 | 227 |
| Msa0817140 | AT5G66350.2 | 48.256 | 344 | 112 | 16 | 1 | 302 | 1 | 320 | 2.37e-72 | 227 |
| Msa0817140 | AT1G19790.2 | 40.055 | 362 | 151 | 13 | 1 | 314 | 1 | 344 | 2.67e-65 | 209 |
| Msa0817140 | AT1G19790.1 | 40.055 | 362 | 151 | 13 | 1 | 314 | 1 | 344 | 2.67e-65 | 209 |
| Msa0817140 | AT1G75520.1 | 51.667 | 240 | 80 | 9 | 98 | 315 | 121 | 346 | 6.78e-65 | 208 |
| Msa0817140 | AT4G36260.1 | 38.988 | 336 | 165 | 14 | 1 | 313 | 1 | 319 | 1.56e-49 | 167 |
| Msa0817140 | AT2G18120.1 | 42.629 | 251 | 87 | 10 | 1 | 244 | 6 | 206 | 5.50e-47 | 158 |
| Msa0817140 | AT2G18120.2 | 42.000 | 250 | 88 | 10 | 1 | 244 | 6 | 204 | 3.54e-45 | 153 |
| Msa0817140 | AT2G21400.2 | 52.055 | 146 | 55 | 3 | 99 | 242 | 7 | 139 | 3.20e-44 | 150 |
| Msa0817140 | AT2G21400.4 | 52.055 | 146 | 55 | 3 | 99 | 242 | 6 | 138 | 3.42e-44 | 150 |
| Msa0817140 | AT2G21400.3 | 50.676 | 148 | 39 | 3 | 99 | 242 | 7 | 124 | 2.28e-43 | 147 |
| Msa0817140 | AT2G21400.1 | 50.676 | 148 | 39 | 3 | 99 | 242 | 6 | 123 | 2.39e-43 | 147 |
| Msa0817140 | AT5G12330.1 | 45.570 | 158 | 69 | 2 | 102 | 242 | 112 | 269 | 5.71e-37 | 135 |
| Msa0817140 | AT5G12330.2 | 45.570 | 158 | 69 | 2 | 102 | 242 | 112 | 269 | 5.71e-37 | 135 |
| Msa0817140 | AT5G12330.4 | 45.570 | 158 | 69 | 2 | 102 | 242 | 199 | 356 | 8.67e-37 | 136 |
| Msa0817140 | AT5G33210.2 | 60.920 | 87 | 26 | 1 | 100 | 178 | 15 | 101 | 7.01e-29 | 107 |
| Msa0817140 | AT5G33210.1 | 60.920 | 87 | 26 | 1 | 100 | 178 | 50 | 136 | 2.37e-28 | 108 |
| Msa0817140 | AT3G54430.1 | 38.926 | 149 | 78 | 4 | 98 | 245 | 37 | 173 | 5.17e-27 | 105 |
| Msa0817140 | AT5G12330.3 | 86.957 | 46 | 6 | 0 | 102 | 147 | 112 | 157 | 6.05e-23 | 95.1 |
Find 80 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5_3:-51979678 | None:intergenic |
| CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5_3:-51978735 | None:intergenic |
| ATTCAGAGCCTTAACAAATT+AGG | 0.215692 | 5_3:+51979821 | Msa0817140:three_prime_UTR |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5_3:+51978471 | Msa0817140:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5_3:+51978331 | Msa0817140:CDS |
| ACTAGAATTAGAGGCGTTTC+CGG | 0.373528 | 5_3:-51979627 | None:intergenic |
| TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5_3:+51979699 | Msa0817140:CDS |
| TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5_3:+51979601 | Msa0817140:CDS |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5_3:-51978807 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5_3:-51978336 | None:intergenic |
| TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5_3:-51978317 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5_3:-51979593 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5_3:+51979465 | Msa0817140:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5_3:+51979581 | Msa0817140:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5_3:-51979803 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5_3:-51978690 | None:intergenic |
| GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5_3:+51979698 | Msa0817140:CDS |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5_3:+51978664 | Msa0817140:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5_3:-51979677 | None:intergenic |
| GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5_3:+51978546 | Msa0817140:CDS |
| GCTGGAGAATTCACCACTGC+TGG | 0.433660 | 5_3:-51979455 | None:intergenic |
| GGTTTGGAATAGTAGTAGTA+TGG | 0.434106 | 5_3:+51978257 | Msa0817140:exon |
| TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5_3:-51979701 | None:intergenic |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5_3:+51978487 | Msa0817140:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5_3:-51979636 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5_3:+51978570 | Msa0817140:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5_3:+51978261 | Msa0817140:exon |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5_3:+51978459 | Msa0817140:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5_3:-51979773 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5_3:+51979644 | Msa0817140:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5_3:-51979802 | None:intergenic |
| GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5_3:+51978540 | Msa0817140:CDS |
| AAAACAAGTGTTGTTGATGT+TGG | 0.482819 | 5_3:-51978413 | None:intergenic |
| CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5_3:+51979700 | Msa0817140:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5_3:-51979473 | None:intergenic |
| TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5_3:+51978534 | Msa0817140:CDS |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5_3:+51978488 | Msa0817140:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5_3:-51979658 | None:intergenic |
| CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5_3:-51979685 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5_3:-51978501 | None:intergenic |
| TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5_3:+51978819 | Msa0817140:CDS |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5_3:+51978571 | Msa0817140:CDS |
| GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5_3:+51978527 | Msa0817140:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5_3:+51978476 | Msa0817140:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5_3:-51978784 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5_3:+51978477 | Msa0817140:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5_3:+51979645 | Msa0817140:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5_3:-51979749 | None:intergenic |
| AGATCTTGTTGCTGCTGCTG+AGG | 0.546054 | 5_3:-51978447 | None:intergenic |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5_3:+51978630 | Msa0817140:CDS |
| AATAGTTACAATATGGCTAC+CGG | 0.553111 | 5_3:+51979608 | Msa0817140:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5_3:-51979734 | None:intergenic |
| AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5_3:+51978528 | Msa0817140:CDS |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5_3:+51979536 | Msa0817140:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5_3:-51978615 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5_3:-51979755 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5_3:+51979582 | Msa0817140:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5_3:+51978375 | Msa0817140:CDS |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5_3:-51979797 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5_3:+51979761 | Msa0817140:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5_3:+51979649 | Msa0817140:CDS |
| ATATATAATATACCTGCTGA+AGG | 0.587423 | 5_3:-51978831 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5_3:-51979799 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5_3:+51979533 | Msa0817140:CDS |
| CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5_3:-51978815 | None:intergenic |
| CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5_3:+51978735 | Msa0817140:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5_3:+51979537 | Msa0817140:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5_3:-51979798 | None:intergenic |
| CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5_3:-51979700 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5_3:+51979502 | Msa0817140:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5_3:-51979765 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5_3:+51978665 | Msa0817140:CDS |
| GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5_3:+51978549 | Msa0817140:CDS |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5_3:-51979796 | None:intergenic |
| TATATAATATACCTGCTGAA+GGG | 0.636400 | 5_3:-51978830 | None:intergenic |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5_3:+51979646 | Msa0817140:CDS |
| GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5_3:-51978816 | None:intergenic |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5_3:-51978475 | None:intergenic |
| GGAAACGCCTCTAATTCTAG+TGG | 0.698556 | 5_3:+51979629 | Msa0817140:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5_3:-51978392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAACTTAAAAAAAGATTT+CGG | + | chr5_3:51979265-51979284 | Msa0817140:intron | 15.0% |
| !!! | TTTTTTTTCCTAATTTGTTA+AGG | - | chr5_3:51979832-51979851 | None:intergenic | 15.0% |
| !! | ATGAACTTAAAAAAAGATTT+CGG | + | chr5_3:51979265-51979284 | Msa0817140:intron | 15.0% |
| !!! | TTTTTTTTCCTAATTTGTTA+AGG | - | chr5_3:51979832-51979851 | None:intergenic | 15.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | chr5_3:51978320-51978339 | None:intergenic | 20.0% |
| !! | AAACAAACAAACTATTAGTT+AGG | - | chr5_3:51979377-51979396 | None:intergenic | 20.0% |
| !! | ATCATAAAAAAAAGGGTTAT+TGG | + | chr5_3:51979418-51979437 | Msa0817140:intron | 20.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | chr5_3:51978320-51978339 | None:intergenic | 20.0% |
| !! | AAACAAACAAACTATTAGTT+AGG | - | chr5_3:51979377-51979396 | None:intergenic | 20.0% |
| !! | ATCATAAAAAAAAGGGTTAT+TGG | + | chr5_3:51979418-51979437 | Msa0817140:intron | 20.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | chr5_3:51978833-51978852 | None:intergenic | 25.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | chr5_3:51978834-51978853 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | chr5_3:51979178-51979197 | None:intergenic | 25.0% |
| ! | TTAAGTTCATTGAATAACTC+AGG | - | chr5_3:51979255-51979274 | None:intergenic | 25.0% |
| !! | TATAACACAGCTTTATAGAA+AGG | - | chr5_3:51979316-51979335 | None:intergenic | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | chr5_3:51979569-51979588 | Msa0817140:CDS | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | chr5_3:51979601-51979620 | Msa0817140:CDS | 25.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | chr5_3:51978833-51978852 | None:intergenic | 25.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | chr5_3:51978834-51978853 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | chr5_3:51979178-51979197 | None:intergenic | 25.0% |
| ! | TTAAGTTCATTGAATAACTC+AGG | - | chr5_3:51979255-51979274 | None:intergenic | 25.0% |
| !! | TATAACACAGCTTTATAGAA+AGG | - | chr5_3:51979316-51979335 | None:intergenic | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | chr5_3:51979569-51979588 | Msa0817140:CDS | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | chr5_3:51979601-51979620 | Msa0817140:CDS | 25.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5_3:51978276-51978295 | Msa0817140:CDS | 30.0% |
| ATAATCCAACAACAGAATTC+TGG | + | chr5_3:51978331-51978350 | Msa0817140:CDS | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | chr5_3:51978339-51978358 | None:intergenic | 30.0% | |
| ! | AAAACAAGTGTTGTTGATGT+TGG | - | chr5_3:51978416-51978435 | None:intergenic | 30.0% |
| AATAGATCTACTGTGTTTGT+GGG | + | chr5_3:51978528-51978547 | Msa0817140:CDS | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | chr5_3:51978571-51978590 | Msa0817140:CDS | 30.0% | |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | + | chr5_3:51978630-51978649 | Msa0817140:CDS | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | chr5_3:51978664-51978683 | Msa0817140:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | chr5_3:51978665-51978684 | Msa0817140:CDS | 30.0% |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5_3:51978944-51978963 | Msa0817140:intron | 30.0% |
| ATTCTCTTCCAAAACTTTCT+CGG | - | chr5_3:51978972-51978991 | None:intergenic | 30.0% | |
| AATGAATGGGATCAATAACA+GGG | + | chr5_3:51979060-51979079 | Msa0817140:intron | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | chr5_3:51979533-51979552 | Msa0817140:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | chr5_3:51979596-51979615 | None:intergenic | 30.0% | |
| AATAGTTACAATATGGCTAC+CGG | + | chr5_3:51979608-51979627 | Msa0817140:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | chr5_3:51979680-51979699 | None:intergenic | 30.0% | |
| GAATGATGAATCAAGATCTT+GGG | - | chr5_3:51979805-51979824 | None:intergenic | 30.0% | |
| TGAATGATGAATCAAGATCT+TGG | - | chr5_3:51979806-51979825 | None:intergenic | 30.0% | |
| ATTCAGAGCCTTAACAAATT+AGG | + | chr5_3:51979821-51979840 | Msa0817140:three_prime_UTR | 30.0% | |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5_3:51978276-51978295 | Msa0817140:CDS | 30.0% |
| ATAATCCAACAACAGAATTC+TGG | + | chr5_3:51978331-51978350 | Msa0817140:CDS | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | chr5_3:51978339-51978358 | None:intergenic | 30.0% | |
| ! | AAAACAAGTGTTGTTGATGT+TGG | - | chr5_3:51978416-51978435 | None:intergenic | 30.0% |
| AATAGATCTACTGTGTTTGT+GGG | + | chr5_3:51978528-51978547 | Msa0817140:CDS | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | chr5_3:51978571-51978590 | Msa0817140:CDS | 30.0% | |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | + | chr5_3:51978630-51978649 | Msa0817140:CDS | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | chr5_3:51978664-51978683 | Msa0817140:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | chr5_3:51978665-51978684 | Msa0817140:CDS | 30.0% |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5_3:51978944-51978963 | Msa0817140:intron | 30.0% |
| ATTCTCTTCCAAAACTTTCT+CGG | - | chr5_3:51978972-51978991 | None:intergenic | 30.0% | |
| AATGAATGGGATCAATAACA+GGG | + | chr5_3:51979060-51979079 | Msa0817140:intron | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | chr5_3:51979533-51979552 | Msa0817140:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | chr5_3:51979596-51979615 | None:intergenic | 30.0% | |
| AATAGTTACAATATGGCTAC+CGG | + | chr5_3:51979608-51979627 | Msa0817140:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | chr5_3:51979680-51979699 | None:intergenic | 30.0% | |
| GAATGATGAATCAAGATCTT+GGG | - | chr5_3:51979805-51979824 | None:intergenic | 30.0% | |
| TGAATGATGAATCAAGATCT+TGG | - | chr5_3:51979806-51979825 | None:intergenic | 30.0% | |
| ATTCAGAGCCTTAACAAATT+AGG | + | chr5_3:51979821-51979840 | Msa0817140:three_prime_UTR | 30.0% | |
| ! | GGTTTGGAATAGTAGTAGTA+TGG | + | chr5_3:51978257-51978276 | Msa0817140:exon | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | chr5_3:51978375-51978394 | Msa0817140:CDS | 35.0% |
| GAATAGATCTACTGTGTTTG+TGG | + | chr5_3:51978527-51978546 | Msa0817140:CDS | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | chr5_3:51978570-51978589 | Msa0817140:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | chr5_3:51978618-51978637 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | chr5_3:51978738-51978757 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | chr5_3:51978735-51978754 | Msa0817140:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | chr5_3:51979047-51979066 | Msa0817140:intron | 35.0% | |
| GAATGAATGGGATCAATAAC+AGG | + | chr5_3:51979059-51979078 | Msa0817140:intron | 35.0% | |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5_3:51979153-51979172 | None:intergenic | 35.0% |
| AAAGGTGAAAGTAGTGTTGT+TGG | - | chr5_3:51979160-51979179 | None:intergenic | 35.0% | |
| TGAATAACTCAGGTATCTGA+TGG | - | chr5_3:51979245-51979264 | None:intergenic | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | chr5_3:51979581-51979600 | Msa0817140:CDS | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | chr5_3:51979582-51979601 | Msa0817140:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | chr5_3:51979681-51979700 | None:intergenic | 35.0% | |
| ! | GGTTTGGAATAGTAGTAGTA+TGG | + | chr5_3:51978257-51978276 | Msa0817140:exon | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | chr5_3:51978375-51978394 | Msa0817140:CDS | 35.0% |
| GAATAGATCTACTGTGTTTG+TGG | + | chr5_3:51978527-51978546 | Msa0817140:CDS | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | chr5_3:51978570-51978589 | Msa0817140:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | chr5_3:51978618-51978637 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | chr5_3:51978738-51978757 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | chr5_3:51978735-51978754 | Msa0817140:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | chr5_3:51979047-51979066 | Msa0817140:intron | 35.0% | |
| GAATGAATGGGATCAATAAC+AGG | + | chr5_3:51979059-51979078 | Msa0817140:intron | 35.0% | |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5_3:51979153-51979172 | None:intergenic | 35.0% |
| AAAGGTGAAAGTAGTGTTGT+TGG | - | chr5_3:51979160-51979179 | None:intergenic | 35.0% | |
| TGAATAACTCAGGTATCTGA+TGG | - | chr5_3:51979245-51979264 | None:intergenic | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | chr5_3:51979581-51979600 | Msa0817140:CDS | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | chr5_3:51979582-51979601 | Msa0817140:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | chr5_3:51979681-51979700 | None:intergenic | 35.0% | |
| TGGAATAGTAGTAGTATGGC+TGG | + | chr5_3:51978261-51978280 | Msa0817140:exon | 40.0% | |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5_3:51978388-51978407 | Msa0817140:CDS | 40.0% |
| GGTTCCAAATCTCAAAACCA+CGG | - | chr5_3:51978395-51978414 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | chr5_3:51978459-51978478 | Msa0817140:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | chr5_3:51978504-51978523 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | chr5_3:51978787-51978806 | None:intergenic | 40.0% | |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5_3:51978961-51978980 | Msa0817140:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | chr5_3:51979041-51979060 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5_3:51979046-51979065 | Msa0817140:intron | 40.0% |
| ! | TGAGATGAATTTTCCAGCAG+TGG | + | chr5_3:51979442-51979461 | Msa0817140:CDS | 40.0% |
| TCAACAGCTGTAAACATTGG+AGG | + | chr5_3:51979536-51979555 | Msa0817140:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | chr5_3:51979537-51979556 | Msa0817140:CDS | 40.0% | |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5_3:51979551-51979570 | Msa0817140:CDS | 40.0% |
| !! | ACTAGAATTAGAGGCGTTTC+CGG | - | chr5_3:51979630-51979649 | None:intergenic | 40.0% |
| GAGTGTACCACTAGAATTAG+AGG | - | chr5_3:51979639-51979658 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | chr5_3:51979752-51979771 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5_3:51979758-51979777 | None:intergenic | 40.0% |
| AATTCCTTCATGCCTTCTAG+TGG | + | chr5_3:51979761-51979780 | Msa0817140:CDS | 40.0% | |
| AAGAATTGCGTACCACTAGA+AGG | - | chr5_3:51979776-51979795 | None:intergenic | 40.0% | |
| ATGAATCAAGATCTTGGGTG+GGG | - | chr5_3:51979800-51979819 | None:intergenic | 40.0% | |
| GATGAATCAAGATCTTGGGT+GGG | - | chr5_3:51979801-51979820 | None:intergenic | 40.0% | |
| TGATGAATCAAGATCTTGGG+TGG | - | chr5_3:51979802-51979821 | None:intergenic | 40.0% | |
| TTCCAAACCCTGAACGAAAA+GGG | - | chr5_3:51978246-51978265 | None:intergenic | 40.0% | |
| ATTCCAAACCCTGAACGAAA+AGG | - | chr5_3:51978247-51978266 | None:intergenic | 40.0% | |
| TGGAATAGTAGTAGTATGGC+TGG | + | chr5_3:51978261-51978280 | Msa0817140:exon | 40.0% | |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5_3:51978388-51978407 | Msa0817140:CDS | 40.0% |
| GGTTCCAAATCTCAAAACCA+CGG | - | chr5_3:51978395-51978414 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | chr5_3:51978459-51978478 | Msa0817140:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | chr5_3:51978504-51978523 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | chr5_3:51978787-51978806 | None:intergenic | 40.0% | |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5_3:51978961-51978980 | Msa0817140:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | chr5_3:51979041-51979060 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5_3:51979046-51979065 | Msa0817140:intron | 40.0% |
| ! | TGAGATGAATTTTCCAGCAG+TGG | + | chr5_3:51979442-51979461 | Msa0817140:CDS | 40.0% |
| TCAACAGCTGTAAACATTGG+AGG | + | chr5_3:51979536-51979555 | Msa0817140:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | chr5_3:51979537-51979556 | Msa0817140:CDS | 40.0% | |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5_3:51979551-51979570 | Msa0817140:CDS | 40.0% |
| !! | ACTAGAATTAGAGGCGTTTC+CGG | - | chr5_3:51979630-51979649 | None:intergenic | 40.0% |
| GAGTGTACCACTAGAATTAG+AGG | - | chr5_3:51979639-51979658 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | chr5_3:51979752-51979771 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5_3:51979758-51979777 | None:intergenic | 40.0% |
| AATTCCTTCATGCCTTCTAG+TGG | + | chr5_3:51979761-51979780 | Msa0817140:CDS | 40.0% | |
| AAGAATTGCGTACCACTAGA+AGG | - | chr5_3:51979776-51979795 | None:intergenic | 40.0% | |
| ATGAATCAAGATCTTGGGTG+GGG | - | chr5_3:51979800-51979819 | None:intergenic | 40.0% | |
| GATGAATCAAGATCTTGGGT+GGG | - | chr5_3:51979801-51979820 | None:intergenic | 40.0% | |
| TGATGAATCAAGATCTTGGG+TGG | - | chr5_3:51979802-51979821 | None:intergenic | 40.0% | |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5_3:51978471-51978490 | Msa0817140:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5_3:51978477-51978496 | Msa0817140:CDS | 45.0% |
| TCTACTGTGTTTGTGGGAAG+TGG | + | chr5_3:51978534-51978553 | Msa0817140:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5_3:51978693-51978712 | None:intergenic | 45.0% | |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5_3:51978810-51978829 | None:intergenic | 45.0% | |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5_3:51979135-51979154 | None:intergenic | 45.0% |
| TGAATTCTCCAGCAGAGTTC+AGG | + | chr5_3:51979465-51979484 | Msa0817140:CDS | 45.0% | |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5_3:51979502-51979521 | Msa0817140:CDS | 45.0% |
| GGAAACGCCTCTAATTCTAG+TGG | + | chr5_3:51979629-51979648 | Msa0817140:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | chr5_3:51979644-51979663 | Msa0817140:CDS | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | chr5_3:51979645-51979664 | Msa0817140:CDS | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | chr5_3:51979646-51979665 | Msa0817140:CDS | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | chr5_3:51979688-51979707 | None:intergenic | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | chr5_3:51979737-51979756 | None:intergenic | 45.0% | |
| TGAATCAAGATCTTGGGTGG+GGG | - | chr5_3:51979799-51979818 | None:intergenic | 45.0% | |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5_3:51978471-51978490 | Msa0817140:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5_3:51978477-51978496 | Msa0817140:CDS | 45.0% |
| TCTACTGTGTTTGTGGGAAG+TGG | + | chr5_3:51978534-51978553 | Msa0817140:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5_3:51978693-51978712 | None:intergenic | 45.0% | |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5_3:51978810-51978829 | None:intergenic | 45.0% | |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5_3:51979135-51979154 | None:intergenic | 45.0% |
| TGAATTCTCCAGCAGAGTTC+AGG | + | chr5_3:51979465-51979484 | Msa0817140:CDS | 45.0% | |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5_3:51979502-51979521 | Msa0817140:CDS | 45.0% |
| GGAAACGCCTCTAATTCTAG+TGG | + | chr5_3:51979629-51979648 | Msa0817140:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | chr5_3:51979644-51979663 | Msa0817140:CDS | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | chr5_3:51979645-51979664 | Msa0817140:CDS | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | chr5_3:51979646-51979665 | Msa0817140:CDS | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | chr5_3:51979688-51979707 | None:intergenic | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | chr5_3:51979737-51979756 | None:intergenic | 45.0% | |
| TGAATCAAGATCTTGGGTGG+GGG | - | chr5_3:51979799-51979818 | None:intergenic | 45.0% | |
| !! | TATTAATTATCATAAAAAAA+AGG | + | chr5_3:51979410-51979429 | Msa0817140:intron | 5.0% |
| !! | ATTAATTATCATAAAAAAAA+GGG | + | chr5_3:51979411-51979430 | Msa0817140:intron | 5.0% |
| !! | TATTAATTATCATAAAAAAA+AGG | + | chr5_3:51979410-51979429 | Msa0817140:intron | 5.0% |
| !! | ATTAATTATCATAAAAAAAA+GGG | + | chr5_3:51979411-51979430 | Msa0817140:intron | 5.0% |
| AGATCTTGTTGCTGCTGCTG+AGG | - | chr5_3:51978450-51978469 | None:intergenic | 50.0% | |
| CACTCCTAACACAACACCAG+AGG | - | chr5_3:51978478-51978497 | None:intergenic | 50.0% | |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5_3:51978476-51978495 | Msa0817140:CDS | 50.0% |
| TGTTAGGAGTGGGACCTACT+AGG | + | chr5_3:51978487-51978506 | Msa0817140:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | chr5_3:51978488-51978507 | Msa0817140:CDS | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | chr5_3:51978540-51978559 | Msa0817140:CDS | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | chr5_3:51978818-51978837 | None:intergenic | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | chr5_3:51979699-51979718 | Msa0817140:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | chr5_3:51979768-51979787 | None:intergenic | 50.0% |
| AGATCTTGTTGCTGCTGCTG+AGG | - | chr5_3:51978450-51978469 | None:intergenic | 50.0% | |
| CACTCCTAACACAACACCAG+AGG | - | chr5_3:51978478-51978497 | None:intergenic | 50.0% | |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5_3:51978476-51978495 | Msa0817140:CDS | 50.0% |
| TGTTAGGAGTGGGACCTACT+AGG | + | chr5_3:51978487-51978506 | Msa0817140:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | chr5_3:51978488-51978507 | Msa0817140:CDS | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | chr5_3:51978540-51978559 | Msa0817140:CDS | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | chr5_3:51978818-51978837 | None:intergenic | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | chr5_3:51979699-51979718 | Msa0817140:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | chr5_3:51979768-51979787 | None:intergenic | 50.0% |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | chr5_3:51978546-51978565 | Msa0817140:CDS | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | chr5_3:51978549-51978568 | Msa0817140:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | chr5_3:51978819-51978838 | None:intergenic | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | chr5_3:51978819-51978838 | Msa0817140:CDS | 55.0% | |
| GCTGGAGAATTCACCACTGC+TGG | - | chr5_3:51979458-51979477 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | chr5_3:51979649-51979668 | Msa0817140:CDS | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | chr5_3:51979698-51979717 | Msa0817140:CDS | 55.0% | |
| CCCCAACAGCAGTAGCATCA+GGG | - | chr5_3:51979703-51979722 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | chr5_3:51979700-51979719 | Msa0817140:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | chr5_3:51979704-51979723 | None:intergenic | 55.0% | |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | chr5_3:51978546-51978565 | Msa0817140:CDS | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | chr5_3:51978549-51978568 | Msa0817140:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | chr5_3:51978819-51978838 | None:intergenic | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | chr5_3:51978819-51978838 | Msa0817140:CDS | 55.0% | |
| GCTGGAGAATTCACCACTGC+TGG | - | chr5_3:51979458-51979477 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | chr5_3:51979649-51979668 | Msa0817140:CDS | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | chr5_3:51979698-51979717 | Msa0817140:CDS | 55.0% | |
| CCCCAACAGCAGTAGCATCA+GGG | - | chr5_3:51979703-51979722 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | chr5_3:51979700-51979719 | Msa0817140:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | chr5_3:51979704-51979723 | None:intergenic | 55.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | chr5_3:51979476-51979495 | None:intergenic | 60.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | chr5_3:51979476-51979495 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | chr5_3:51979661-51979680 | None:intergenic | 65.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | chr5_3:51979661-51979680 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51978246 | 51979903 | 51978246 | ID=Msa0817140;Name=Msa0817140 |
| chr5_3 | mRNA | 51978246 | 51979903 | 51978246 | ID=Msa0817140-mRNA-1;Parent=Msa0817140;Name=Msa0817140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=30|1|1|1|1|1|2|89|315 |
| chr5_3 | exon | 51978246 | 51978840 | 51978246 | ID=Msa0817140-mRNA-1:exon:15570;Parent=Msa0817140-mRNA-1 |
| chr5_3 | exon | 51979432 | 51979903 | 51979432 | ID=Msa0817140-mRNA-1:exon:15571;Parent=Msa0817140-mRNA-1 |
| chr5_3 | five_prime_UTR | 51978246 | 51978275 | 51978246 | ID=Msa0817140-mRNA-1:five_prime_utr;Parent=Msa0817140-mRNA-1 |
| chr5_3 | CDS | 51978276 | 51978840 | 51978276 | ID=Msa0817140-mRNA-1:cds;Parent=Msa0817140-mRNA-1 |
| chr5_3 | CDS | 51979432 | 51979814 | 51979432 | ID=Msa0817140-mRNA-1:cds;Parent=Msa0817140-mRNA-1 |
| chr5_3 | three_prime_UTR | 51979815 | 51979903 | 51979815 | ID=Msa0817140-mRNA-1:three_prime_utr;Parent=Msa0817140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
