AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817740 MtrunA17_Chr5g0436761 89.827 462 43 2 27 486 1 460 0.0 818
Msa0817740 MtrunA17_Chr5g0417281 52.539 512 177 10 34 486 7 511 9.55e-167 481
Msa0817740 MtrunA17_Chr5g0424931 50.383 522 181 10 32 486 13 523 1.32e-158 460
Msa0817740 MtrunA17_Chr5g0417211 54.604 467 140 8 27 486 1 402 9.30e-158 454
Msa0817740 MtrunA17_Chr2g0289221 62.500 320 113 4 25 342 7 321 1.80e-137 400
Msa0817740 MtrunA17_Chr1g0178011 47.300 463 204 11 27 476 1 436 2.50e-132 390
Msa0817740 MtrunA17_Chr2g0277461 44.776 469 218 13 30 484 5 446 3.23e-112 339
Msa0817740 MtrunA17_Chr3g0115271 40.948 464 214 8 26 439 7 460 1.88e-100 313
Msa0817740 MtrunA17_Chr5g0424741 39.539 521 219 16 31 464 5 516 5.25e-98 305
Msa0817740 MtrunA17_Chr5g0425261 47.536 345 154 7 32 363 6 336 3.07e-94 290
Msa0817740 MtrunA17_Chr5g0424801 46.875 352 159 9 32 369 6 343 6.33e-94 289
Msa0817740 MtrunA17_Chr2g0326761 38.004 471 207 12 35 439 8 459 9.19e-90 288
Msa0817740 MtrunA17_Chr1g0181211 37.813 439 196 12 35 410 24 448 1.67e-81 266
Msa0817740 MtrunA17_Chr4g0028971 37.387 444 203 11 27 409 1 430 2.07e-81 266
Msa0817740 MtrunA17_Chr1g0199681 37.709 419 188 10 23 384 79 481 7.03e-79 259
Msa0817740 MtrunA17_Chr7g0264171 36.758 438 201 13 35 408 28 453 6.21e-78 255
Msa0817740 MtrunA17_Chr2g0277531 43.438 320 157 11 32 342 14 318 4.09e-74 236
Msa0817740 MtrunA17_Chr7g0264161 40.575 313 155 9 48 342 2 301 2.16e-65 213
Msa0817740 MtrunA17_Chr2g0285461 34.465 383 212 12 17 375 3 370 6.01e-58 206
Msa0817740 MtrunA17_Chr2g0301251 35.227 352 192 10 35 364 20 357 8.19e-58 206
Msa0817740 MtrunA17_Chr5g0425661 47.085 223 111 4 10 228 8 227 8.91e-58 191
Msa0817740 MtrunA17_Chr4g0070181 32.071 449 248 14 35 440 20 454 2.96e-57 205
Msa0817740 MtrunA17_Chr5g0433301 34.417 369 196 12 35 375 21 371 3.07e-57 203
Msa0817740 MtrunA17_Chr3g0109391 33.693 371 196 11 35 375 23 373 7.01e-56 199
Msa0817740 MtrunA17_Chr2g0282961 33.333 369 206 11 18 362 35 387 1.49e-55 195
Msa0817740 MtrunA17_Chr4g0009751 30.140 428 253 10 36 442 17 419 1.88e-55 195
Msa0817740 MtrunA17_Chr8g0376771 33.943 383 213 12 17 375 3 369 2.10e-55 199
Msa0817740 MtrunA17_Chr1g0156321 33.158 380 210 12 35 395 40 394 3.59e-53 192
Msa0817740 MtrunA17_Chr8g0385791 33.978 362 214 9 37 381 58 411 6.81e-53 191
Msa0817740 MtrunA17_Chr7g0239061 33.046 348 208 8 38 369 14 352 2.15e-51 185
Msa0817740 MtrunA17_Chr8g0389081 33.618 351 203 8 35 365 29 369 4.14e-51 187
Msa0817740 MtrunA17_Chr2g0326281 33.075 387 209 13 38 383 56 433 1.54e-49 181
Msa0817740 MtrunA17_Chr4g0029671 34.511 368 207 9 38 379 54 413 6.09e-49 179
Msa0817740 MtrunA17_Chr8g0346711 32.951 349 207 9 38 370 29 366 7.72e-49 178
Msa0817740 MtrunA17_Chr4g0046371 32.295 353 197 11 38 362 38 376 1.37e-47 174
Msa0817740 MtrunA17_Chr2g0276781 31.856 361 220 8 37 381 22 372 2.10e-46 171
Msa0817740 MtrunA17_Chr5g0425651 54.032 124 47 5 259 373 1 123 1.39e-32 120
Msa0817740 MtrunA17_Chr5g0424791 39.865 148 77 4 86 231 11 148 3.00e-23 95.9
Msa0817740 MtrunA17_Chr8g0356211 27.413 259 157 9 151 391 7 252 5.03e-20 90.9
Msa0817740 MtrunA17_Chr5g0419861 38.333 120 65 3 70 184 6 121 2.41e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817740 AT1G77850.1 35.986 553 238 13 35 486 16 553 5.88e-96 301
Msa0817740 AT1G77850.2 35.986 553 238 13 35 486 16 553 6.53e-96 302
Msa0817740 AT4G30080.1 38.409 440 188 11 23 398 4 424 5.35e-85 275
Msa0817740 AT2G28350.2 39.024 410 178 10 35 384 7 404 2.74e-79 260
Msa0817740 AT2G28350.1 39.024 410 178 10 35 384 7 404 4.12e-79 260
Msa0817740 AT5G37020.2 34.877 367 197 12 35 375 19 369 1.65e-59 209
Msa0817740 AT5G37020.1 34.605 367 198 12 35 375 19 369 3.07e-59 209
Msa0817740 AT1G30330.1 34.109 387 208 11 17 375 3 370 2.90e-57 204
Msa0817740 AT1G30330.3 33.938 386 212 10 17 375 3 372 3.60e-57 204
Msa0817740 AT1G30330.2 33.938 386 212 10 17 375 3 372 3.60e-57 204
Msa0817740 AT2G33860.1 33.248 391 212 12 38 401 54 422 1.95e-55 195
Msa0817740 AT1G19220.1 34.511 368 204 11 19 364 5 357 1.73e-54 197
Msa0817740 AT5G20730.3 33.875 369 208 10 18 364 5 359 4.07e-54 196
Msa0817740 AT5G20730.1 33.875 369 208 10 18 364 5 359 5.59e-54 196
Msa0817740 AT5G20730.2 34.146 369 206 11 18 364 5 358 6.38e-54 196
Msa0817740 AT4G23980.1 32.000 375 223 10 38 392 12 374 9.17e-54 191
Msa0817740 AT4G23980.2 32.075 371 220 10 38 388 12 370 3.91e-53 189
Msa0817740 AT1G19850.2 35.068 365 204 11 30 375 36 386 1.32e-52 191
Msa0817740 AT1G19850.1 35.068 365 204 11 30 375 47 397 1.67e-52 191
Msa0817740 AT5G60450.2 34.908 381 204 13 33 379 28 398 2.54e-52 189
Msa0817740 AT5G60450.1 35.326 368 202 12 38 379 65 422 5.96e-52 188
Msa0817740 AT5G62000.2 31.931 404 246 10 27 411 52 445 6.21e-52 189
Msa0817740 AT5G62000.5 31.931 404 246 10 27 411 52 445 6.21e-52 189
Msa0817740 AT5G62000.3 31.931 404 246 10 27 411 52 445 6.21e-52 189
Msa0817740 AT5G62000.1 31.931 404 246 10 27 411 52 445 6.21e-52 189
Msa0817740 AT5G62000.4 32.234 394 240 9 37 411 60 445 8.67e-52 188
Msa0817740 AT2G46530.1 32.410 361 211 9 38 379 21 367 9.92e-52 185
Msa0817740 AT3G61830.1 33.060 366 208 12 38 381 25 375 1.87e-51 184
Msa0817740 AT2G46530.3 32.578 353 205 9 38 371 42 380 2.15e-51 184
Msa0817740 AT1G35520.1 33.243 367 201 12 38 381 27 372 3.40e-47 172
Msa0817740 AT1G59750.4 31.081 370 213 10 37 381 21 373 7.35e-47 172
Msa0817740 AT1G59750.2 31.081 370 213 10 37 381 21 373 8.13e-47 172
Msa0817740 AT1G59750.1 31.081 370 213 10 37 381 21 373 9.26e-47 172
Msa0817740 AT1G59750.3 31.081 370 213 10 37 381 21 373 9.26e-47 172
Msa0817740 AT1G34310.1 30.022 463 274 13 35 468 24 465 1.14e-46 171
Msa0817740 AT1G35240.1 29.646 452 272 13 38 469 27 452 2.47e-46 170
Msa0817740 AT1G34410.1 32.861 353 196 11 38 370 27 358 3.05e-46 170
Msa0817740 AT1G35540.1 31.395 344 199 8 38 362 27 352 7.40e-45 166
Msa0817740 AT1G34170.1 32.584 356 191 12 33 362 20 352 8.80e-45 164
Msa0817740 AT1G34390.1 31.880 367 204 12 38 381 27 370 4.32e-44 164
Msa0817740 AT5G37020.3 36.508 252 134 8 140 375 33 274 1.10e-43 164
Msa0817740 AT2G33860.2 33.692 279 151 9 140 401 4 265 4.38e-41 153
Msa0817740 AT3G61830.2 33.016 315 179 10 85 381 24 324 1.51e-40 153
Msa0817740 AT1G34170.2 32.092 349 176 12 33 362 20 326 1.14e-38 147
Msa0817740 AT1G34170.3 32.092 349 176 12 33 362 20 326 2.88e-38 147
Msa0817740 AT2G46530.2 33.061 245 140 6 140 371 39 272 2.52e-36 141
Msa0817740 AT1G43950.1 33.488 215 115 8 38 243 27 222 2.70e-24 101
Msa0817740 ATMG00940.1 35.915 142 79 6 199 338 13 144 2.31e-15 74.3

Find 110 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGTTCTATTAAGCTATT+TGG 0.141873 5_3:+53121289 Msa0817740:CDS
TCTTAATATCATAGGTTAAC+TGG 0.217841 5_3:+53120930 Msa0817740:intron
GTTGACACAAAGAAAATTAT+TGG 0.252106 5_3:+53118954 Msa0817740:CDS
AGGGAGAGTGTCTCGGTGTT+AGG 0.314359 5_3:-53118537 None:intergenic
AGAAAGCAATGCAAATTAAT+TGG 0.320693 5_3:+53119201 Msa0817740:CDS
GAAGTACCTGAGACGGCATT+TGG 0.330889 5_3:-53118836 None:intergenic
TCATCCATGGCGCATGCTTC+AGG 0.334788 5_3:+53119325 Msa0817740:CDS
CGTTATGGAGGCAGCAGAAT+TGG 0.366432 5_3:+53119094 Msa0817740:CDS
AAAACTTGAGAATTTAGTTT+CGG 0.371328 5_3:-53118474 None:intergenic
ATGCAAATTAATTGGCAATC+TGG 0.372298 5_3:+53119209 Msa0817740:CDS
GAGCGCCAGAAAATATGATT+AGG 0.373290 5_3:-53118333 None:intergenic
GGCAGCAGAATTGGCGGATA+AGG 0.384504 5_3:+53119103 Msa0817740:CDS
TACTCCAGTTAGTGGTGATT+AGG 0.404311 5_3:-53118926 None:intergenic
GACCATAGAGGTTGTTGAAA+AGG 0.408752 5_3:+53121315 Msa0817740:CDS
TCTCTCTATGTTAGTTGATA+AGG 0.411301 5_3:-53121080 None:intergenic
GGGAGAGTGTCTCGGTGTTA+GGG 0.417483 5_3:-53118536 None:intergenic
AGCGCCAGAAAATATGATTA+GGG 0.422758 5_3:-53118332 None:intergenic
AAGAAATTGAACTCTATCTC+TGG 0.424200 5_3:-53121112 None:intergenic
GACACCTAATCACCACTAAC+TGG 0.430030 5_3:+53118922 Msa0817740:CDS
GTCATTATCATTCAAAGAGT+TGG 0.431834 5_3:-53121218 None:intergenic
ATTATCCGACGGCTAGTCAT+TGG 0.433407 5_3:+53119147 Msa0817740:CDS
TGCCAAGGACTTACTTGACT+TGG 0.438785 5_3:-53120977 None:intergenic
GTGGGTTTCTGAGGATCCAT+GGG 0.447035 5_3:-53118399 None:intergenic
GAGACGGCATTTGGGATTGT+AGG 0.450973 5_3:-53118827 None:intergenic
GGTGGGTTTCTGAGGATCCA+TGG 0.451620 5_3:-53118400 None:intergenic
AAAATCTGGCAGTGCTTGGC+CGG 0.457026 5_3:+53118435 Msa0817740:CDS
GGGAATTGTAGAGGCAGTGC+TGG 0.458275 5_3:-53121022 None:intergenic
AGTGGTGATTAGGTGTCGCT+TGG 0.461123 5_3:-53118916 None:intergenic
AACGAACTTACTCCAGTTAG+TGG 0.466764 5_3:-53118934 None:intergenic
AATGCCGTCTCAGGTACTTC+CGG 0.466944 5_3:+53118839 Msa0817740:CDS
GCAGTGCTTGGCCGGACCAT+CGG 0.467814 5_3:+53118443 Msa0817740:CDS
GAAGACGAACAAGGTGGTGA+TGG 0.472136 5_3:+53118702 Msa0817740:CDS
GGAGACGACGCAGGGAATGA+TGG 0.473784 5_3:-53118577 None:intergenic
TTACTTTCCACTAGGTCACT+TGG 0.487944 5_3:+53118497 Msa0817740:CDS
AAGTACCTGAGACGGCATTT+GGG 0.489716 5_3:-53118835 None:intergenic
TGGGACGGTAACCATTGATA+AGG 0.490688 5_3:-53118557 None:intergenic
TTGCATGAGTCTCGTATCAA+TGG 0.490704 5_3:+53121340 Msa0817740:CDS
ATCCAAGTCAAGTAAGTCCT+TGG 0.492391 5_3:+53120975 Msa0817740:CDS
ACAATCCCAAATGCCGTCTC+AGG 0.502462 5_3:+53118830 Msa0817740:CDS
CAAAGAGTTGGAAGAAGTTG+AGG 0.511344 5_3:-53121206 None:intergenic
ATCAATTTCGCGCATTCAGA+AGG 0.518250 5_3:-53118789 None:intergenic
GATAAAGATGAGATCTTCAT+CGG 0.522227 5_3:+53119023 Msa0817740:CDS
CTTAATATCATAGGTTAACT+GGG 0.524753 5_3:+53120931 Msa0817740:intron
CATCATAATTCAACGACGAT+GGG 0.525431 5_3:-53121138 None:intergenic
AACTTTCGCCACACCTACCG+TGG 0.527055 5_3:+53118888 Msa0817740:CDS
GTCTCAGGTACTTCCGGTCA+AGG 0.528972 5_3:+53118845 Msa0817740:CDS
AACTCTATCTCTGGAATGGA+GGG 0.529089 5_3:-53121103 None:intergenic
GTGGTGATTAGGTGTCGCTT+GGG 0.529316 5_3:-53118915 None:intergenic
TTCGTGAAAACCATTGGTGA+TGG 0.529499 5_3:-53118661 None:intergenic
AGTGTCTCGGTGTTAGGGGA+AGG 0.530063 5_3:-53118531 None:intergenic
ATTGAACTCTATCTCTGGAA+TGG 0.532356 5_3:-53121107 None:intergenic
GGGACGGTAACCATTGATAA+GGG 0.533931 5_3:-53118556 None:intergenic
CACCGTTATTAGCATCAGAC+GGG 0.539853 5_3:-53118752 None:intergenic
TGGGTTTCTGAGGATCCATG+GGG 0.544883 5_3:-53118398 None:intergenic
AGGAGCTTCGTGAAAACCAT+TGG 0.550219 5_3:-53118667 None:intergenic
GCTATTTGGTAAGACCATAG+AGG 0.550878 5_3:+53121303 Msa0817740:CDS
TATCAATGGAGAGGATGGTT+CGG 0.552538 5_3:+53121354 Msa0817740:CDS
CTGATCCTTCTCATCATCCA+TGG 0.552744 5_3:+53119312 Msa0817740:CDS
ATCAACGTGGGAGACGACGC+AGG 0.552853 5_3:-53118586 None:intergenic
GAGACGACGCAGGGAATGAT+GGG 0.554533 5_3:-53118576 None:intergenic
CAATTCTGCTGCCTCCATAA+CGG 0.556885 5_3:-53119093 None:intergenic
AAGTGCTGCTGCTAAGATAA+CGG 0.557189 5_3:+53119064 Msa0817740:CDS
TATGGAGGCAGCAGAATTGG+CGG 0.563383 5_3:+53119097 Msa0817740:CDS
AAGACGAACAAGGTGGTGAT+GGG 0.566040 5_3:+53118703 Msa0817740:CDS
GAACTCTATCTCTGGAATGG+AGG 0.568555 5_3:-53121104 None:intergenic
TGAAGTTATTTATTATCCGA+CGG 0.573203 5_3:+53119136 Msa0817740:CDS
ACCCCGTCTGATGCTAATAA+CGG 0.573286 5_3:+53118750 Msa0817740:CDS
TCGTGAAAACCATTGGTGAT+GGG 0.574083 5_3:-53118660 None:intergenic
GCATCATAATTCAACGACGA+TGG 0.574168 5_3:-53121139 None:intergenic
AAATTGTGGATGTCCTTGAC+CGG 0.574466 5_3:-53118858 None:intergenic
GAGACACTCTCCCTTATCAA+TGG 0.574718 5_3:+53118546 Msa0817740:CDS
CTTCTAACTCCCATCACCAA+TGG 0.575065 5_3:+53118651 Msa0817740:CDS
GGGTTTCTGAGGATCCATGG+GGG 0.578685 5_3:-53118397 None:intergenic
TCAACACGGGTGGGTTTCTG+AGG 0.579497 5_3:-53118408 None:intergenic
GGGATTGTAGGTCAAGTGGC+GGG 0.582541 5_3:-53118815 None:intergenic
TCTCGTATCAATGGAGAGGA+TGG 0.584544 5_3:+53121349 Msa0817740:CDS
ATTTGGGATTGTAGGTCAAG+TGG 0.584928 5_3:-53118819 None:intergenic
AGATCTTCATCGGAATCCGC+AGG 0.586965 5_3:+53119033 Msa0817740:CDS
GACACAAAGAAAATTATTGG+CGG 0.588137 5_3:+53118957 Msa0817740:CDS
GTGTCTCGGTGTTAGGGGAA+GGG 0.590737 5_3:-53118530 None:intergenic
TGGGAGACCCACGGTAGGTG+TGG 0.592829 5_3:-53118896 None:intergenic
TTTCGCGCATTCAGAAGGTA+CGG 0.595810 5_3:-53118784 None:intergenic
TCGTCTTCATGAACCTCCTG+AGG 0.595929 5_3:-53118687 None:intergenic
ATGCGCCATGGATGATGAGA+AGG 0.597068 5_3:-53119317 None:intergenic
GCATGTTCCAAGTGACCTAG+TGG 0.597744 5_3:-53118504 None:intergenic
TCTTTGAATGATAATGACAA+TGG 0.598013 5_3:+53121223 Msa0817740:CDS
CCACCGTTATTAGCATCAGA+CGG 0.605856 5_3:-53118753 None:intergenic
CAGCACTTAACTTGTGCCTG+CGG 0.605893 5_3:-53119049 None:intergenic
CATACCTGAAGCATGCGCCA+TGG 0.607260 5_3:-53119329 None:intergenic
ATTGATAAGGGAGAGTGTCT+CGG 0.607906 5_3:-53118544 None:intergenic
TGGGATTGTAGGTCAAGTGG+CGG 0.613260 5_3:-53118816 None:intergenic
GAAAGTTCCAAACAAAATTG+TGG 0.613552 5_3:-53118872 None:intergenic
GAAATAAGTTCAATCTGCCA+AGG 0.619391 5_3:-53120992 None:intergenic
GGAGAGTGTCTCGGTGTTAG+GGG 0.624404 5_3:-53118535 None:intergenic
TAGAGGCAGTGCTGGAGTGT+GGG 0.633339 5_3:-53121014 None:intergenic
ACTTTCGCCACACCTACCGT+GGG 0.642314 5_3:+53118889 Msa0817740:CDS
CGACGCAGGGAATGATGGGA+CGG 0.650343 5_3:-53118572 None:intergenic
GAGGTTCATGAAGACGAACA+AGG 0.654030 5_3:+53118693 Msa0817740:CDS
TGAGTCTCGTATCAATGGAG+AGG 0.655210 5_3:+53121345 Msa0817740:CDS
TCGCTTGGGAGACCCACGGT+AGG 0.655585 5_3:-53118901 None:intergenic
ATCAGCTAAGAGATCAACGT+GGG 0.664891 5_3:-53118598 None:intergenic
GTAGAGGCAGTGCTGGAGTG+TGG 0.665724 5_3:-53121015 None:intergenic
TCAACGTGGGAGACGACGCA+GGG 0.667679 5_3:-53118585 None:intergenic
TTGACCGGAAGTACCTGAGA+CGG 0.673143 5_3:-53118843 None:intergenic
TTACACCAATGACTAGCCGT+CGG 0.681240 5_3:-53119152 None:intergenic
GGTGTCGCTTGGGAGACCCA+CGG 0.696022 5_3:-53118905 None:intergenic
CCGTCTGATGCTAATAACGG+TGG 0.711537 5_3:+53118753 Msa0817740:CDS
ACCGTTATTAGCATCAGACG+GGG 0.747888 5_3:-53118751 None:intergenic
GTTCATGAAGACGAACAAGG+TGG 0.759394 5_3:+53118696 Msa0817740:CDS
GATCAGCTAAGAGATCAACG+TGG 0.811536 5_3:-53118599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATAAAAGTACATATTA+AGG - chr5_3:53120455-53120474 None:intergenic 10.0%
!! TTATTTGTAAAATTATGACT+AGG + chr5_3:53119534-53119553 Msa0817740:intron 15.0%
!! TATTTGTAAAATTATGACTA+GGG + chr5_3:53119535-53119554 Msa0817740:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr5_3:53120213-53120232 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr5_3:53120214-53120233 None:intergenic 15.0%
!! TGTTTAATATGTAAAAATAG+TGG + chr5_3:53120367-53120386 Msa0817740:intron 15.0%
!! GTTTAATATGTAAAAATAGT+GGG + chr5_3:53120368-53120387 Msa0817740:intron 15.0%
!! AATTAATTTATGTGCATAAT+AGG + chr5_3:53120710-53120729 Msa0817740:intron 15.0%
!!! AAAACTTGAGAATTTAGTTT+CGG - chr5_3:53118477-53118496 None:intergenic 20.0%
!!! AGAATTTTTCATTAAAACGA+GGG - chr5_3:53118988-53119007 None:intergenic 20.0%
!!! TAGAATTTTTCATTAAAACG+AGG - chr5_3:53118989-53119008 None:intergenic 20.0%
!! TTCATCTGTAATAACATTTA+TGG - chr5_3:53119421-53119440 None:intergenic 20.0%
!! TACAAATAATGTTATCACAT+TGG - chr5_3:53119523-53119542 None:intergenic 20.0%
!!! CTCTAAAAAATTGTTTAGAT+GGG - chr5_3:53119659-53119678 None:intergenic 20.0%
!!! ATCGTTCATTTCTAATTTTT+TGG - chr5_3:53119753-53119772 None:intergenic 20.0%
!! GATAATAGGTGTAAATTAAA+GGG - chr5_3:53119839-53119858 None:intergenic 20.0%
!! AGATAATAGGTGTAAATTAA+AGG - chr5_3:53119840-53119859 None:intergenic 20.0%
!!! TATTACTTTTTTATGCAAGT+GGG - chr5_3:53120252-53120271 None:intergenic 20.0%
!!! TTATTACTTTTTTATGCAAG+TGG - chr5_3:53120253-53120272 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG - chr5_3:53120334-53120353 None:intergenic 20.0%
!!! CATATTTAAGTACTTTTCAT+TGG + chr5_3:53120392-53120411 Msa0817740:intron 20.0%
!! TAAATATAAGAATGTTGTAG+TGG - chr5_3:53120825-53120844 None:intergenic 20.0%
!! TATGATATTAAGATGAAAAG+TGG - chr5_3:53120923-53120942 None:intergenic 20.0%
!!! ACTTTTCATCTTAATATCAT+AGG + chr5_3:53120922-53120941 Msa0817740:intron 20.0%
!! AAAACCCTAATCATATTTTC+TGG + chr5_3:53118328-53118347 Msa0817740:CDS 25.0%
! GTTGACACAAAGAAAATTAT+TGG + chr5_3:53118954-53118973 Msa0817740:CDS 25.0%
! TGAAGTTATTTATTATCCGA+CGG + chr5_3:53119136-53119155 Msa0817740:CDS 25.0%
! AGAAAGCAATGCAAATTAAT+TGG + chr5_3:53119201-53119220 Msa0817740:CDS 25.0%
!! CCTCTAAAAAATTGTTTAGA+TGG - chr5_3:53119660-53119679 None:intergenic 25.0%
!!! CCATCTAAACAATTTTTTAG+AGG + chr5_3:53119657-53119676 Msa0817740:intron 25.0%
! AACTATAAAGTTGTACACAT+TGG + chr5_3:53119923-53119942 Msa0817740:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr5_3:53120225-53120244 Msa0817740:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr5_3:53120225-53120244 Msa0817740:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG - chr5_3:53120293-53120312 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG - chr5_3:53120294-53120313 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr5_3:53120225-53120244 Msa0817740:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG - chr5_3:53120335-53120354 None:intergenic 25.0%
!! GTGATTTATACTCCAATTTT+AGG - chr5_3:53120661-53120680 None:intergenic 25.0%
! TATTAAGATGAAAAGTGGTA+AGG - chr5_3:53120918-53120937 None:intergenic 25.0%
! TCTTAATATCATAGGTTAAC+TGG + chr5_3:53120930-53120949 Msa0817740:intron 25.0%
! CTTAATATCATAGGTTAACT+GGG + chr5_3:53120931-53120950 Msa0817740:intron 25.0%
!!! AATTCTAAGCTTTTTTTGTG+GGG - chr5_3:53121047-53121066 None:intergenic 25.0%
!!! CAATTCTAAGCTTTTTTTGT+GGG - chr5_3:53121048-53121067 None:intergenic 25.0%
!! TCTTTGAATGATAATGACAA+TGG + chr5_3:53121223-53121242 Msa0817740:CDS 25.0%
! AACACCAAAAAAGTTAATCA+TGG + chr5_3:53121271-53121290 Msa0817740:CDS 25.0%
!!! AGAACCATGATTAACTTTTT+TGG - chr5_3:53121278-53121297 None:intergenic 25.0%
!!! CAAGTTTTTTACTTTCCACT+AGG + chr5_3:53118489-53118508 Msa0817740:CDS 30.0%
GAAAGTTCCAAACAAAATTG+TGG - chr5_3:53118875-53118894 None:intergenic 30.0%
GACACAAAGAAAATTATTGG+CGG + chr5_3:53118957-53118976 Msa0817740:CDS 30.0%
GATAAAGATGAGATCTTCAT+CGG + chr5_3:53119023-53119042 Msa0817740:CDS 30.0%
! TAGTCATTGGTGTAATTTTG+TGG + chr5_3:53119160-53119179 Msa0817740:CDS 30.0%
ATGCAAATTAATTGGCAATC+TGG + chr5_3:53119209-53119228 Msa0817740:CDS 30.0%
! AAGAGAAGCTCAATTTTTCA+AGG + chr5_3:53119272-53119291 Msa0817740:CDS 30.0%
!! AGAGAAGCTCAATTTTTCAA+GGG + chr5_3:53119273-53119292 Msa0817740:CDS 30.0%
!! TCAGGTATGATTTCTTGTTT+TGG + chr5_3:53119343-53119362 Msa0817740:intron 30.0%
TGTATACATAAGACTAGAGT+CGG + chr5_3:53119774-53119793 Msa0817740:intron 30.0%
TGGAAGAAACACAAGATAAT+AGG - chr5_3:53119853-53119872 None:intergenic 30.0%
TATATTTAAGGGGTTCAAGA+TGG - chr5_3:53119873-53119892 None:intergenic 30.0%
ATCTTGAACCCCTTAAATAT+AGG + chr5_3:53119872-53119891 Msa0817740:intron 30.0%
TCTTGAACCCCTTAAATATA+GGG + chr5_3:53119873-53119892 Msa0817740:intron 30.0%
! ACCTTTTCTATTGACATCAA+AGG + chr5_3:53120002-53120021 Msa0817740:intron 30.0%
ACCTTTGATGTCAATAGAAA+AGG - chr5_3:53120006-53120025 None:intergenic 30.0%
TATTTAAGGAGTCCTTGTTA+GGG + chr5_3:53120508-53120527 Msa0817740:intron 30.0%
AAGATAATTTCACACCTACA+TGG + chr5_3:53120632-53120651 Msa0817740:intron 30.0%
!!! ATTCTAAGCTTTTTTTGTGG+GGG - chr5_3:53121046-53121065 None:intergenic 30.0%
!!! GCAATTCTAAGCTTTTTTTG+TGG - chr5_3:53121049-53121068 None:intergenic 30.0%
AAAAAAGCTTAGAATTGCTC+AGG + chr5_3:53121051-53121070 Msa0817740:CDS 30.0%
AAAAAGCTTAGAATTGCTCA+GGG + chr5_3:53121052-53121071 Msa0817740:CDS 30.0%
! TCTCTCTATGTTAGTTGATA+AGG - chr5_3:53121083-53121102 None:intergenic 30.0%
AAGAAATTGAACTCTATCTC+TGG - chr5_3:53121115-53121134 None:intergenic 30.0%
GTCATTATCATTCAAAGAGT+TGG - chr5_3:53121221-53121240 None:intergenic 30.0%
!!! AATGACAATGGTTTTGTTGA+AGG + chr5_3:53121235-53121254 Msa0817740:CDS 30.0%
!!! GATTAACTTTTTTGGTGTTG+AGG - chr5_3:53121270-53121289 None:intergenic 30.0%
! CATGGTTCTATTAAGCTATT+TGG + chr5_3:53121289-53121308 Msa0817740:CDS 30.0%
AGCGCCAGAAAATATGATTA+GGG - chr5_3:53118335-53118354 None:intergenic 35.0%
! CAGTTTTGCAAAGACTTCAT+CGG - chr5_3:53118631-53118650 None:intergenic 35.0%
! AGGACATCCACAATTTTGTT+TGG + chr5_3:53118865-53118884 Msa0817740:CDS 35.0%
!! GATAACGGAAAAATCCGTTA+TGG + chr5_3:53119079-53119098 Msa0817740:CDS 35.0%
! TCATTGGTGTAATTTTGTGG+TGG + chr5_3:53119163-53119182 Msa0817740:CDS 35.0%
TTCCATAATTAGACGATGCA+TGG + chr5_3:53119455-53119474 Msa0817740:intron 35.0%
AACCATGCATCGTCTAATTA+TGG - chr5_3:53119460-53119479 None:intergenic 35.0%
! AGTAGCTTTGCAACTAGTAT+AGG + chr5_3:53119490-53119509 Msa0817740:intron 35.0%
! TCGGAATCGACTTATATCTA+AGG + chr5_3:53119793-53119812 Msa0817740:intron 35.0%
! CGGAATCGACTTATATCTAA+GGG + chr5_3:53119794-53119813 Msa0817740:intron 35.0%
GTACAAGCCCTATATTTAAG+GGG - chr5_3:53119883-53119902 None:intergenic 35.0%
GGTACAAGCCCTATATTTAA+GGG - chr5_3:53119884-53119903 None:intergenic 35.0%
TGGTACAAGCCCTATATTTA+AGG - chr5_3:53119885-53119904 None:intergenic 35.0%
! TTACGTACTGATGAAAGAGA+TGG - chr5_3:53119905-53119924 None:intergenic 35.0%
! AGGTTTTTCATAAACCTACC+TGG + chr5_3:53120022-53120041 Msa0817740:intron 35.0%
ATATAAGCAAGCAAAAAGCC+AGG - chr5_3:53120043-53120062 None:intergenic 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG - chr5_3:53120126-53120145 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG - chr5_3:53120127-53120146 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG - chr5_3:53120130-53120149 None:intergenic 35.0%
CCAATGGCAATACACTAATA+AGG - chr5_3:53120421-53120440 None:intergenic 35.0%
CCTTATTAGTGTATTGCCAT+TGG + chr5_3:53120418-53120437 Msa0817740:intron 35.0%
TAAATAAGTGATGTGTCACG+TGG + chr5_3:53120481-53120500 Msa0817740:intron 35.0%
AAATAAGTGATGTGTCACGT+GGG + chr5_3:53120482-53120501 Msa0817740:intron 35.0%
CTATTTAAGGAGTCCTTGTT+AGG + chr5_3:53120507-53120526 Msa0817740:intron 35.0%
CCTAAAACTTAGTACTCGAT+CGG + chr5_3:53120581-53120600 Msa0817740:intron 35.0%
GAAATAAGTTCAATCTGCCA+AGG - chr5_3:53120995-53121014 None:intergenic 35.0%
!!! TTCTAAGCTTTTTTTGTGGG+GGG - chr5_3:53121045-53121064 None:intergenic 35.0%
! ATTGAACTCTATCTCTGGAA+TGG - chr5_3:53121110-53121129 None:intergenic 35.0%
CATCATAATTCAACGACGAT+GGG - chr5_3:53121141-53121160 None:intergenic 35.0%
!! TGCTTTTCTTGATAGCATGA+AGG + chr5_3:53121159-53121178 Msa0817740:CDS 35.0%
!! GCTTTTCTTGATAGCATGAA+GGG + chr5_3:53121160-53121179 Msa0817740:CDS 35.0%
GGCAGAAAAAAGATTAGGTA+TGG - chr5_3:53121188-53121207 None:intergenic 35.0%
GTTGAGGCAGAAAAAAGATT+AGG - chr5_3:53121193-53121212 None:intergenic 35.0%
!!! TTTTTTGGTGTTGAGGTTGT+GGG - chr5_3:53121263-53121282 None:intergenic 35.0%
! ATCCTTTTCAACAACCTCTA+TGG - chr5_3:53121320-53121339 None:intergenic 35.0%
GAGCGCCAGAAAATATGATT+AGG - chr5_3:53118336-53118355 None:intergenic 40.0%
!! ATTTTTCGATCAACACGGGT+GGG - chr5_3:53118420-53118439 None:intergenic 40.0%
!! CCAGATTTTTCGATCAACAC+GGG - chr5_3:53118424-53118443 None:intergenic 40.0%
!! GCCAGATTTTTCGATCAACA+CGG - chr5_3:53118425-53118444 None:intergenic 40.0%
!! AGTTTCGGAATTTTGACCGA+TGG - chr5_3:53118462-53118481 None:intergenic 40.0%
TTACTTTCCACTAGGTCACT+TGG + chr5_3:53118497-53118516 Msa0817740:CDS 40.0%
!! ATTGATAAGGGAGAGTGTCT+CGG - chr5_3:53118547-53118566 None:intergenic 40.0%
ATCAGCTAAGAGATCAACGT+GGG - chr5_3:53118601-53118620 None:intergenic 40.0%
! TCGTGAAAACCATTGGTGAT+GGG - chr5_3:53118663-53118682 None:intergenic 40.0%
TTCGTGAAAACCATTGGTGA+TGG - chr5_3:53118664-53118683 None:intergenic 40.0%
ATCAATTTCGCGCATTCAGA+AGG - chr5_3:53118792-53118811 None:intergenic 40.0%
! ATTTGGGATTGTAGGTCAAG+TGG - chr5_3:53118822-53118841 None:intergenic 40.0%
AAATTGTGGATGTCCTTGAC+CGG - chr5_3:53118861-53118880 None:intergenic 40.0%
TACTCCAGTTAGTGGTGATT+AGG - chr5_3:53118929-53118948 None:intergenic 40.0%
AACGAACTTACTCCAGTTAG+TGG - chr5_3:53118937-53118956 None:intergenic 40.0%
! AAGTGCTGCTGCTAAGATAA+CGG + chr5_3:53119064-53119083 Msa0817740:CDS 40.0%
AACGGAAAAATCCGTTATGG+AGG + chr5_3:53119082-53119101 Msa0817740:CDS 40.0%
AATCAATGACTCTCTCACAG+TGG + chr5_3:53119594-53119613 Msa0817740:intron 40.0%
ATCAATGACTCTCTCACAGT+GGG + chr5_3:53119595-53119614 Msa0817740:intron 40.0%
GTGTAAATTAAAGGGTCGAG+GGG - chr5_3:53119831-53119850 None:intergenic 40.0%
GGTGTAAATTAAAGGGTCGA+GGG - chr5_3:53119832-53119851 None:intergenic 40.0%
AGGTGTAAATTAAAGGGTCG+AGG - chr5_3:53119833-53119852 None:intergenic 40.0%
! TGTGCAGTATGCCATCTTTT+TGG - chr5_3:53119959-53119978 None:intergenic 40.0%
GGTTAATGTCTCTGAGTCAA+TGG - chr5_3:53119985-53120004 None:intergenic 40.0%
!! TGTACTAAGAGCATCTCCAA+TGG + chr5_3:53120062-53120081 Msa0817740:intron 40.0%
!! GTACTAAGAGCATCTCCAAT+GGG + chr5_3:53120063-53120082 Msa0817740:intron 40.0%
!! TACTAAGAGCATCTCCAATG+GGG + chr5_3:53120064-53120083 Msa0817740:intron 40.0%
GAAAAATTGAGTCCCCGTTA+AGG + chr5_3:53120139-53120158 Msa0817740:intron 40.0%
TATAGTTGCCCGTTCCTTAA+CGG - chr5_3:53120156-53120175 None:intergenic 40.0%
AAGGAACGGGCAACTATATA+AGG + chr5_3:53120158-53120177 Msa0817740:intron 40.0%
TAAGGACTCAATGACTCCAA+TGG - chr5_3:53120437-53120456 None:intergenic 40.0%
AATAAGTGATGTGTCACGTG+GGG + chr5_3:53120483-53120502 Msa0817740:intron 40.0%
ACAATGGTAGTTCCCTAACA+AGG - chr5_3:53120523-53120542 None:intergenic 40.0%
TTGTTAGGGAACTACCATTG+TGG + chr5_3:53120522-53120541 Msa0817740:intron 40.0%
! CCGATCGAGTACTAAGTTTT+AGG - chr5_3:53120584-53120603 None:intergenic 40.0%
!! TACTCGATCGGTCTTATTGT+AGG + chr5_3:53120593-53120612 Msa0817740:intron 40.0%
!!! CCAATTTTAGGACACCATGT+AGG - chr5_3:53120649-53120668 None:intergenic 40.0%
CCTACATGGTGTCCTAAAAT+TGG + chr5_3:53120646-53120665 Msa0817740:intron 40.0%
ATCCAAGTCAAGTAAGTCCT+TGG + chr5_3:53120975-53120994 Msa0817740:CDS 40.0%
!! AACTCTATCTCTGGAATGGA+GGG - chr5_3:53121106-53121125 None:intergenic 40.0%
GCATCATAATTCAACGACGA+TGG - chr5_3:53121142-53121161 None:intergenic 40.0%
CAAAGAGTTGGAAGAAGTTG+AGG - chr5_3:53121209-53121228 None:intergenic 40.0%
!!! CTTTTTTGGTGTTGAGGTTG+TGG - chr5_3:53121264-53121283 None:intergenic 40.0%
GCTATTTGGTAAGACCATAG+AGG + chr5_3:53121303-53121322 Msa0817740:CDS 40.0%
GACCATAGAGGTTGTTGAAA+AGG + chr5_3:53121315-53121334 Msa0817740:CDS 40.0%
TTGCATGAGTCTCGTATCAA+TGG + chr5_3:53121340-53121359 Msa0817740:CDS 40.0%
TATCAATGGAGAGGATGGTT+CGG + chr5_3:53121354-53121373 Msa0817740:CDS 40.0%
!! GATTTTTCGATCAACACGGG+TGG - chr5_3:53118421-53118440 None:intergenic 45.0%
! CCCGTGTTGATCGAAAAATC+TGG + chr5_3:53118421-53118440 Msa0817740:CDS 45.0%
TCGAAAAATCTGGCAGTGCT+TGG + chr5_3:53118431-53118450 Msa0817740:CDS 45.0%
GAGACACTCTCCCTTATCAA+TGG + chr5_3:53118546-53118565 Msa0817740:CDS 45.0%
GGGACGGTAACCATTGATAA+GGG - chr5_3:53118559-53118578 None:intergenic 45.0%
TGGGACGGTAACCATTGATA+AGG - chr5_3:53118560-53118579 None:intergenic 45.0%
GATCAGCTAAGAGATCAACG+TGG - chr5_3:53118602-53118621 None:intergenic 45.0%
CTTCTAACTCCCATCACCAA+TGG + chr5_3:53118651-53118670 Msa0817740:CDS 45.0%
AGGAGCTTCGTGAAAACCAT+TGG - chr5_3:53118670-53118689 None:intergenic 45.0%
GAGGTTCATGAAGACGAACA+AGG + chr5_3:53118693-53118712 Msa0817740:CDS 45.0%
GTTCATGAAGACGAACAAGG+TGG + chr5_3:53118696-53118715 Msa0817740:CDS 45.0%
AAGACGAACAAGGTGGTGAT+GGG + chr5_3:53118703-53118722 Msa0817740:CDS 45.0%
!!! GGTGATGGGCTTGTTTTTTC+TGG + chr5_3:53118717-53118736 Msa0817740:CDS 45.0%
ACCCCGTCTGATGCTAATAA+CGG + chr5_3:53118750-53118769 Msa0817740:CDS 45.0%
ACCGTTATTAGCATCAGACG+GGG - chr5_3:53118754-53118773 None:intergenic 45.0%
CACCGTTATTAGCATCAGAC+GGG - chr5_3:53118755-53118774 None:intergenic 45.0%
CCACCGTTATTAGCATCAGA+CGG - chr5_3:53118756-53118775 None:intergenic 45.0%
TTTCGCGCATTCAGAAGGTA+CGG - chr5_3:53118787-53118806 None:intergenic 45.0%
AAGTACCTGAGACGGCATTT+GGG - chr5_3:53118838-53118857 None:intergenic 45.0%
GACACCTAATCACCACTAAC+TGG + chr5_3:53118922-53118941 Msa0817740:CDS 45.0%
CAATTCTGCTGCCTCCATAA+CGG - chr5_3:53119096-53119115 None:intergenic 45.0%
! ATTATCCGACGGCTAGTCAT+TGG + chr5_3:53119147-53119166 Msa0817740:CDS 45.0%
! TTACACCAATGACTAGCCGT+CGG - chr5_3:53119155-53119174 None:intergenic 45.0%
CTGATCCTTCTCATCATCCA+TGG + chr5_3:53119312-53119331 Msa0817740:CDS 45.0%
GAGCATGCTGTCCAAAAAGA+TGG + chr5_3:53119945-53119964 Msa0817740:intron 45.0%
AAGCAAGCAAAAAGCCAGGT+AGG - chr5_3:53120039-53120058 None:intergenic 45.0%
!! ACTAAGAGCATCTCCAATGG+GGG + chr5_3:53120065-53120084 Msa0817740:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr5_3:53120093-53120112 None:intergenic 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG + chr5_3:53120144-53120163 Msa0817740:intron 45.0%
ATAGTTGCCCGTTCCTTAAC+GGG - chr5_3:53120155-53120174 None:intergenic 45.0%
TTAGTTACCCAGGAGAGAGA+GGG - chr5_3:53120185-53120204 None:intergenic 45.0%
TCTCTCTCCTGGGTAACTAA+CGG + chr5_3:53120185-53120204 Msa0817740:intron 45.0%
TGTCACGTGGGGTCTATTTA+AGG + chr5_3:53120494-53120513 Msa0817740:intron 45.0%
CTACCATTGTGGATGCTCTA+AGG + chr5_3:53120533-53120552 Msa0817740:intron 45.0%
! ACACCTTAGAGCATCCACAA+TGG - chr5_3:53120539-53120558 None:intergenic 45.0%
TGCCAAGGACTTACTTGACT+TGG - chr5_3:53120980-53120999 None:intergenic 45.0%
! TTTTGTGGGGGGAATTGTAG+AGG - chr5_3:53121034-53121053 None:intergenic 45.0%
!! GAACTCTATCTCTGGAATGG+AGG - chr5_3:53121107-53121126 None:intergenic 45.0%
TGAGTCTCGTATCAATGGAG+AGG + chr5_3:53121345-53121364 Msa0817740:CDS 45.0%
TCTCGTATCAATGGAGAGGA+TGG + chr5_3:53121349-53121368 Msa0817740:CDS 45.0%
!!! TTTAAAATGTTTAAATTTAT+TGG + chr5_3:53119628-53119647 Msa0817740:intron 5.0%
!! TTTATTAGATATTATTATTA+AGG + chr5_3:53119703-53119722 Msa0817740:intron 5.0%
!! AAAATTGAAAAAATAATATA+AGG - chr5_3:53120864-53120883 None:intergenic 5.0%
GGGGGAAGCGATAAAGCTAT+CGG - chr5_3:53118382-53118401 None:intergenic 50.0%
!! TAGCTTTATCGCTTCCCCCA+TGG + chr5_3:53118383-53118402 Msa0817740:CDS 50.0%
! TGGGTTTCTGAGGATCCATG+GGG - chr5_3:53118401-53118420 None:intergenic 50.0%
! GTGGGTTTCTGAGGATCCAT+GGG - chr5_3:53118402-53118421 None:intergenic 50.0%
AAAATCTGGCAGTGCTTGGC+CGG + chr5_3:53118435-53118454 Msa0817740:CDS 50.0%
!! CGGAATTTTGACCGATGGTC+CGG - chr5_3:53118457-53118476 None:intergenic 50.0%
GCATGTTCCAAGTGACCTAG+TGG - chr5_3:53118507-53118526 None:intergenic 50.0%
! TGGTTTTCACGAAGCTCCTC+AGG + chr5_3:53118671-53118690 Msa0817740:CDS 50.0%
! TTTTCACGAAGCTCCTCAGG+AGG + chr5_3:53118674-53118693 Msa0817740:CDS 50.0%
TCGTCTTCATGAACCTCCTG+AGG - chr5_3:53118690-53118709 None:intergenic 50.0%
GAAGACGAACAAGGTGGTGA+TGG + chr5_3:53118702-53118721 Msa0817740:CDS 50.0%
CCGTCTGATGCTAATAACGG+TGG + chr5_3:53118753-53118772 Msa0817740:CDS 50.0%
TGGGATTGTAGGTCAAGTGG+CGG - chr5_3:53118819-53118838 None:intergenic 50.0%
! GAGACGGCATTTGGGATTGT+AGG - chr5_3:53118830-53118849 None:intergenic 50.0%
ACAATCCCAAATGCCGTCTC+AGG + chr5_3:53118830-53118849 Msa0817740:CDS 50.0%
! GAAGTACCTGAGACGGCATT+TGG - chr5_3:53118839-53118858 None:intergenic 50.0%
AATGCCGTCTCAGGTACTTC+CGG + chr5_3:53118839-53118858 Msa0817740:CDS 50.0%
!! TTGACCGGAAGTACCTGAGA+CGG - chr5_3:53118846-53118865 None:intergenic 50.0%
!! GTGGTGATTAGGTGTCGCTT+GGG - chr5_3:53118918-53118937 None:intergenic 50.0%
!! AGTGGTGATTAGGTGTCGCT+TGG - chr5_3:53118919-53118938 None:intergenic 50.0%
AGATCTTCATCGGAATCCGC+AGG + chr5_3:53119033-53119052 Msa0817740:CDS 50.0%
!! CAGCACTTAACTTGTGCCTG+CGG - chr5_3:53119052-53119071 None:intergenic 50.0%
CGTTATGGAGGCAGCAGAAT+TGG + chr5_3:53119094-53119113 Msa0817740:CDS 50.0%
TATGGAGGCAGCAGAATTGG+CGG + chr5_3:53119097-53119116 Msa0817740:CDS 50.0%
ATGCGCCATGGATGATGAGA+AGG - chr5_3:53119320-53119339 None:intergenic 50.0%
!! CTAAGAGCATCTCCAATGGG+GGG + chr5_3:53120066-53120085 Msa0817740:intron 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr5_3:53120081-53120100 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr5_3:53120082-53120101 Msa0817740:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr5_3:53120115-53120134 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr5_3:53120116-53120135 None:intergenic 50.0%
TTGAGTCCCCGTTAAGGAAC+GGG + chr5_3:53120145-53120164 Msa0817740:intron 50.0%
TAGTTGCCCGTTCCTTAACG+GGG - chr5_3:53120154-53120173 None:intergenic 50.0%
TATAAGGACCCTCTCTCTCC+TGG + chr5_3:53120174-53120193 Msa0817740:intron 50.0%
ATAAGGACCCTCTCTCTCCT+GGG + chr5_3:53120175-53120194 Msa0817740:intron 50.0%
GTTAGTTACCCAGGAGAGAG+AGG - chr5_3:53120186-53120205 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG + chr5_3:53120186-53120205 Msa0817740:intron 50.0%
! GGGTTTCTGAGGATCCATGG+GGG - chr5_3:53118400-53118419 None:intergenic 55.0%
! GGTGGGTTTCTGAGGATCCA+TGG - chr5_3:53118403-53118422 None:intergenic 55.0%
! TCAACACGGGTGGGTTTCTG+AGG - chr5_3:53118411-53118430 None:intergenic 55.0%
!! GTGTCTCGGTGTTAGGGGAA+GGG - chr5_3:53118533-53118552 None:intergenic 55.0%
!! AGTGTCTCGGTGTTAGGGGA+AGG - chr5_3:53118534-53118553 None:intergenic 55.0%
!! GGAGAGTGTCTCGGTGTTAG+GGG - chr5_3:53118538-53118557 None:intergenic 55.0%
!! GGGAGAGTGTCTCGGTGTTA+GGG - chr5_3:53118539-53118558 None:intergenic 55.0%
!! AGGGAGAGTGTCTCGGTGTT+AGG - chr5_3:53118540-53118559 None:intergenic 55.0%
GAGACGACGCAGGGAATGAT+GGG - chr5_3:53118579-53118598 None:intergenic 55.0%
GGGATTGTAGGTCAAGTGGC+GGG - chr5_3:53118818-53118837 None:intergenic 55.0%
GTCTCAGGTACTTCCGGTCA+AGG + chr5_3:53118845-53118864 Msa0817740:CDS 55.0%
AACTTTCGCCACACCTACCG+TGG + chr5_3:53118888-53118907 Msa0817740:CDS 55.0%
ACTTTCGCCACACCTACCGT+GGG + chr5_3:53118889-53118908 Msa0817740:CDS 55.0%
! GGCAGCAGAATTGGCGGATA+AGG + chr5_3:53119103-53119122 Msa0817740:CDS 55.0%
TCATCCATGGCGCATGCTTC+AGG + chr5_3:53119325-53119344 Msa0817740:CDS 55.0%
CATACCTGAAGCATGCGCCA+TGG - chr5_3:53119332-53119351 None:intergenic 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr5_3:53120099-53120118 Msa0817740:intron 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr5_3:53120114-53120133 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr5_3:53120114-53120133 Msa0817740:intron 55.0%
! TAGAGGCAGTGCTGGAGTGT+GGG - chr5_3:53121017-53121036 None:intergenic 55.0%
GGGAATTGTAGAGGCAGTGC+TGG - chr5_3:53121025-53121044 None:intergenic 55.0%
! CGACGCAGGGAATGATGGGA+CGG - chr5_3:53118575-53118594 None:intergenic 60.0%
GGAGACGACGCAGGGAATGA+TGG - chr5_3:53118580-53118599 None:intergenic 60.0%
TCAACGTGGGAGACGACGCA+GGG - chr5_3:53118588-53118607 None:intergenic 60.0%
ATCAACGTGGGAGACGACGC+AGG - chr5_3:53118589-53118608 None:intergenic 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr5_3:53120111-53120130 Msa0817740:intron 60.0%
GTGGGACCCGTTAGTTACCC+AGG - chr5_3:53120195-53120214 None:intergenic 60.0%
! GTAGAGGCAGTGCTGGAGTG+TGG - chr5_3:53121018-53121037 None:intergenic 60.0%
GCAGTGCTTGGCCGGACCAT+CGG + chr5_3:53118443-53118462 Msa0817740:CDS 65.0%
TGGGAGACCCACGGTAGGTG+TGG - chr5_3:53118899-53118918 None:intergenic 65.0%
TCGCTTGGGAGACCCACGGT+AGG - chr5_3:53118904-53118923 None:intergenic 65.0%
!! GGTGTCGCTTGGGAGACCCA+CGG - chr5_3:53118908-53118927 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr5_3:53120109-53120128 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53118324 53121381 53118324 ID=Msa0817740;Name=Msa0817740
chr5_3 mRNA 53118324 53121381 53118324 ID=Msa0817740-mRNA-1;Parent=Msa0817740;Name=Msa0817740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|486
chr5_3 exon 53118324 53119346 53118324 ID=Msa0817740-mRNA-1:exon:15996;Parent=Msa0817740-mRNA-1
chr5_3 exon 53120944 53121381 53120944 ID=Msa0817740-mRNA-1:exon:15997;Parent=Msa0817740-mRNA-1
chr5_3 CDS 53118324 53119346 53118324 ID=Msa0817740-mRNA-1:cds;Parent=Msa0817740-mRNA-1
chr5_3 CDS 53120944 53121381 53120944 ID=Msa0817740-mRNA-1:cds;Parent=Msa0817740-mRNA-1
Gene Sequence

>Msa0817740

TTGAAAAACCCTAATCATATTTTCTGGCGCTCTCTAACAAATTCTTTCTTCTCTTCCGATAGCTTTATCGCTTCCCCCATGGATCCTCAGAAACCCACCCGTGTTGATCGAAAAATCTGGCAGTGCTTGGCCGGACCATCGGTCAAAATTCCGAAACTAAATTCTCAAGTTTTTTACTTTCCACTAGGTCACTTGGAACATGCATGCCCTTCCCCTAACACCGAGACACTCTCCCTTATCAATGGTTACCGTCCCATCATTCCCTGCGTCGTCTCCCACGTTGATCTCTTAGCTGATCTTCGAACCGATGAAGTCTTTGCAAAACTGCTTCTAACTCCCATCACCAATGGTTTTCACGAAGCTCCTCAGGAGGTTCATGAAGACGAACAAGGTGGTGATGGGCTTGTTTTTTCTGGCAAGACTCTCACCCCGTCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTTCTGAATGCGCGAAATTGATATTCCCGCCACTTGACCTACAATCCCAAATGCCGTCTCAGGTACTTCCGGTCAAGGACATCCACAATTTTGTTTGGAACTTTCGCCACACCTACCGTGGGTCTCCCAAGCGACACCTAATCACCACTAACTGGAGTAAGTTCGTTGACACAAAGAAAATTATTGGCGGCGATTCCCTCGTTTTAATGAAAAATTCTAAAGATAAAGATAAAGATAAAGATGAGATCTTCATCGGAATCCGCAGGCACAAGTTAAGTGCTGCTGCTAAGATAACGGAAAAATCCGTTATGGAGGCAGCAGAATTGGCGGATAAGGACATGACTTTTGAAGTTATTTATTATCCGACGGCTAGTCATTGGTGTAATTTTGTGGTGGAAGCTGAAGTTGTAAAGAAAGCAATGCAAATTAATTGGCAATCTGGAATGAGAGTTAAACTTTGTTTGAAGACTGATGAATCTTCAAAGAGAAGCTCAATTTTTCAAGGGACAGTATCTGCTTTATCTGATCCTTCTCATCATCCATGGCGCATGCTTCAGGTTAACTGGGATGAATCTGAAGTCTCTCAAAATCCAAGTCAAGTAAGTCCTTGGCAGATTGAACTTATTTCCCACACTCCAGCACTGCCTCTACAATTCCCCCCACAAAAAAAGCTTAGAATTGCTCAGGGTTCTGCCTTATCAACTAACATAGAGAGACCCTCCATTCCAGAGATAGAGTTCAATTTCTTAAACCCATCGTCGTTGAATTATGATGCTTTTCTTGATAGCATGAAGGGAACCATACCTAATCTTTTTTCTGCCTCAACTTCTTCCAACTCTTTGAATGATAATGACAATGGTTTTGTTGAAGGTACCCACAACCTCAACACCAAAAAAGTTAATCATGGTTCTATTAAGCTATTTGGTAAGACCATAGAGGTTGTTGAAAAGGATTTGCATGAGTCTCGTATCAATGGAGAGGATGGTTCGGAATAA
Protein sequence

>Msa0817740

LKNPNHIFWRSLTNSFFSSDSFIASPMDPQKPTRVDRKIWQCLAGPSVKIPKLNSQVFYFPLGHLEHACPSPNTETLSLINGYRPIIPCVVSHVDLLADLRTDEVFAKLLLTPITNGFHEAPQEVHEDEQGGDGLVFSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQSQMPSQVLPVKDIHNFVWNFRHTYRGSPKRHLITTNWSKFVDTKKIIGGDSLVLMKNSKDKDKDKDEIFIGIRRHKLSAAAKITEKSVMEAAELADKDMTFEVIYYPTASHWCNFVVEAEVVKKAMQINWQSGMRVKLCLKTDESSKRSSIFQGTVSALSDPSHHPWRMLQVNWDESEVSQNPSQVSPWQIELISHTPALPLQFPPQKKLRIAQGSALSTNIERPSIPEIEFNFLNPSSLNYDAFLDSMKGTIPNLFSASTSSNSLNDNDNGFVEGTHNLNTKKVNHGSIKLFGKTIEVVEKDLHESRINGEDGSE*