AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817900 MtrunA17_Chr5g0436941 50.754 199 46 2 1 149 753 949 4.39e-52 177
Msa0817900 MtrunA17_Chr1g0159881 46.231 199 55 2 1 149 227 423 1.36e-44 152
Msa0817900 MtrunA17_Chr1g0159871 45.226 199 57 2 1 149 686 882 1.00e-42 150
Msa0817900 MtrunA17_Chr5g0436861 44.949 198 59 1 1 148 757 954 1.36e-42 150
Msa0817900 MtrunA17_Chr5g0437331 46.667 195 56 2 1 149 760 952 2.20e-42 149
Msa0817900 MtrunA17_Chr2g0314001 44.221 199 59 2 1 149 759 955 3.44e-42 149
Msa0817900 MtrunA17_Chr5g0436841 45.226 199 57 2 1 149 805 1001 1.64e-41 147
Msa0817900 MtrunA17_Chr2g0314021 43.719 199 60 2 1 149 759 955 2.58e-41 146
Msa0817900 MtrunA17_Chr7g0248261 44.500 200 58 2 1 149 709 906 1.13e-40 144
Msa0817900 MtrunA17_Chr2g0314031 42.714 199 53 4 1 149 755 942 1.21e-37 135
Msa0817900 MtrunA17_Chr5g0436921 63.043 92 34 0 1 92 752 843 3.25e-31 117
Msa0817900 MtrunA17_Chr8g0367351 36.224 196 75 2 1 147 763 957 1.04e-30 115
Msa0817900 MtrunA17_Chr3g0113221 34.872 195 79 1 1 147 757 951 4.52e-30 114
Msa0817900 MtrunA17_Chr5g0436911 60.870 92 34 1 1 92 10 99 2.44e-29 108
Msa0817900 MtrunA17_Chr5g0436911 54.386 57 26 0 93 149 181 237 2.40e-12 62.8
Msa0817900 MtrunA17_Chr8g0366461 35.533 197 76 3 1 147 761 956 1.12e-28 110
Msa0817900 MtrunA17_Chr1g0196031 34.184 196 77 2 1 147 804 996 4.05e-28 108
Msa0817900 MtrunA17_Chr5g0408421 32.487 197 82 3 1 147 748 943 5.77e-28 108
Msa0817900 MtrunA17_Chr5g0408621 34.184 196 80 1 1 147 801 996 9.50e-28 107
Msa0817900 MtrunA17_Chr1g0196001 33.673 196 78 2 1 147 764 956 1.17e-27 107
Msa0817900 MtrunA17_Chr1g0159851 59.783 92 37 0 1 92 525 616 1.18e-27 107
Msa0817900 MtrunA17_Chr5g0408401 34.184 196 81 1 1 148 531 726 1.90e-27 106
Msa0817900 MtrunA17_Chr5g0408611 33.163 196 82 1 1 147 754 949 8.03e-27 104
Msa0817900 MtrunA17_Chr7g0241921 35.533 197 73 2 1 147 741 933 1.25e-26 104
Msa0817900 MtrunA17_Chr6g0464141 34.518 197 78 3 1 147 767 962 1.29e-26 104
Msa0817900 MtrunA17_Chr5g0408821 32.653 196 81 3 1 146 160 354 1.40e-26 102
Msa0817900 MtrunA17_Chr8g0380951 32.821 195 81 2 2 147 726 919 1.82e-26 103
Msa0817900 MtrunA17_Chr8g0363641 34.946 186 71 3 1 147 28 202 2.16e-26 99.8
Msa0817900 MtrunA17_Chr6g0464171 33.503 197 80 3 1 147 767 962 2.72e-26 103
Msa0817900 MtrunA17_Chr5g0408741 32.995 197 81 3 1 147 671 866 3.30e-26 103
Msa0817900 MtrunA17_Chr6g0464211 33.333 198 79 3 1 147 766 961 4.34e-26 102
Msa0817900 MtrunA17_Chr5g0408571 32.995 197 81 3 1 147 245 440 8.10e-26 101
Msa0817900 MtrunA17_Chr6g0464161 33.503 197 80 3 1 147 496 691 8.90e-26 102
Msa0817900 MtrunA17_Chr5g0408801 33.673 196 79 3 1 146 767 961 9.68e-26 101
Msa0817900 MtrunA17_Chr5g0408811 33.679 193 81 3 1 147 742 933 1.07e-25 101
Msa0817900 MtrunA17_Chr8g0352041 45.378 119 45 3 31 149 1 99 2.11e-25 93.6
Msa0817900 MtrunA17_Chr5g0403401 31.980 197 83 3 1 147 755 950 2.27e-25 100
Msa0817900 MtrunA17_Chr5g0408511 31.980 197 83 3 1 147 763 958 2.31e-25 100
Msa0817900 MtrunA17_Chr8g0363501 34.031 191 71 3 1 147 292 471 2.99e-25 100
Msa0817900 MtrunA17_Chr3g0127701 33.333 195 79 3 1 147 730 921 4.86e-25 99.8
Msa0817900 MtrunA17_Chr2g0300201 32.487 197 82 3 1 147 767 962 5.16e-25 99.8
Msa0817900 MtrunA17_Chr8g0380941 31.795 195 83 2 2 147 757 950 6.02e-25 99.4
Msa0817900 MtrunA17_Chr2g0284151 34.637 179 73 3 1 146 580 747 6.27e-25 99.4
Msa0817900 MtrunA17_Chr5g0408581 32.653 196 83 1 1 147 767 962 6.92e-25 99.4
Msa0817900 MtrunA17_Chr5g0407241 30.457 197 86 3 1 147 772 967 8.55e-25 99.0
Msa0817900 MtrunA17_Chr5g0419221 32.642 193 79 3 1 143 766 957 8.71e-25 99.0
Msa0817900 MtrunA17_Chr1g0196011 32.323 198 78 3 1 147 596 788 1.21e-24 98.6
Msa0817900 MtrunA17_Chr8g0362981 33.508 191 72 3 1 147 512 691 1.68e-24 98.2
Msa0817900 MtrunA17_Chr8g0360851 32.984 191 73 3 1 147 780 959 1.76e-24 98.2
Msa0817900 MtrunA17_Chr8g0363191 32.984 191 73 3 1 147 473 652 1.88e-24 98.2
Msa0817900 MtrunA17_Chr5g0409241 34.615 182 72 3 1 136 447 627 1.97e-24 97.8
Msa0817900 MtrunA17_Chr8g0363401 33.508 191 72 3 1 147 561 740 2.29e-24 97.8
Msa0817900 MtrunA17_Chr5g0408431 32.828 198 80 3 1 147 765 960 2.31e-24 97.8
Msa0817900 MtrunA17_Chr8g0363221 33.333 186 74 3 1 147 631 805 3.22e-24 97.4
Msa0817900 MtrunA17_Chr8g0363061 34.031 191 71 3 1 147 752 931 3.33e-24 97.4
Msa0817900 MtrunA17_Chr3g0127671 32.308 195 81 3 1 147 775 966 3.62e-24 97.4
Msa0817900 MtrunA17_Chr8g0363241 32.984 191 73 3 1 147 514 693 5.03e-24 97.1
Msa0817900 MtrunA17_Chr8g0362871 33.508 191 72 3 1 147 546 725 5.46e-24 96.7
Msa0817900 MtrunA17_Chr2g0284121 31.414 191 76 3 1 147 985 1164 5.55e-24 96.7
Msa0817900 MtrunA17_Chr8g0363281 32.984 191 73 3 1 147 529 708 5.89e-24 96.7
Msa0817900 MtrunA17_Chr0c09g0493531 32.632 190 73 3 1 146 624 802 8.13e-24 96.3
Msa0817900 MtrunA17_Chr8g0361231 32.984 191 73 3 1 147 848 1027 8.50e-24 96.3
Msa0817900 MtrunA17_Chr8g0362941 32.984 191 73 3 1 147 512 691 8.98e-24 96.3
Msa0817900 MtrunA17_Chr8g0363601 32.984 191 73 3 1 147 546 725 9.30e-24 96.3
Msa0817900 MtrunA17_Chr8g0362431 33.508 191 72 3 1 147 554 733 1.10e-23 95.9
Msa0817900 MtrunA17_Chr8g0363661 34.031 191 71 3 1 147 609 788 1.11e-23 95.9
Msa0817900 MtrunA17_Chr2g0284191 32.632 190 73 3 1 146 615 793 1.32e-23 95.5
Msa0817900 MtrunA17_Chr8g0363121 32.461 191 74 3 1 147 556 735 1.47e-23 95.5
Msa0817900 MtrunA17_Chr8g0362911 33.508 191 72 3 1 147 495 674 1.90e-23 95.1
Msa0817900 MtrunA17_Chr1g0176301 32.461 191 74 3 1 147 511 690 3.04e-23 94.7
Msa0817900 MtrunA17_Chr4g0013491 32.984 191 73 3 1 147 509 688 5.64e-23 94.0
Msa0817900 MtrunA17_Chr8g0362841 32.461 191 74 3 1 147 598 777 6.43e-23 93.6
Msa0817900 MtrunA17_Chr8g0363691 32.461 191 74 3 1 147 1020 1199 6.56e-23 93.6
Msa0817900 MtrunA17_Chr8g0362931 32.461 191 74 3 1 147 941 1120 2.17e-22 92.4
Msa0817900 MtrunA17_Chr8g0362961 31.937 191 75 3 1 147 996 1175 2.49e-22 92.0
Msa0817900 MtrunA17_Chr3g0095201 30.890 191 77 3 1 147 760 939 2.52e-22 92.0
Msa0817900 MtrunA17_Chr8g0363111 32.461 191 74 3 1 147 756 935 2.54e-22 92.0
Msa0817900 MtrunA17_Chr5g0436871 39.241 158 77 4 1 149 10 157 8.34e-20 81.6
Msa0817900 MtrunA17_Chr8g0362391 30.366 191 69 4 1 147 107 277 2.69e-18 79.7
Msa0817900 MtrunA17_Chr5g0400701 30.460 174 66 4 1 129 760 923 6.25e-17 76.6
Msa0817900 MtrunA17_Chr3g0078611 50.667 75 31 2 31 101 1 73 7.42e-17 70.5
Msa0817900 MtrunA17_Chr5g0407891 43.011 93 51 2 1 92 85 176 1.37e-16 74.3
Msa0817900 MtrunA17_Chr8g0363371 41.026 117 56 4 1 116 568 672 4.75e-16 73.9
Msa0817900 MtrunA17_Chr3g0084191 27.273 176 93 4 1 146 280 450 4.78e-16 73.9
Msa0817900 MtrunA17_Chr8g0363331 44.565 92 40 2 1 92 28 108 5.20e-16 70.5
Msa0817900 MtrunA17_Chr5g0436851 59.649 57 23 0 93 149 46 102 1.22e-15 69.3
Msa0817900 MtrunA17_Chr4g0018701 27.374 179 83 3 1 137 772 945 2.74e-15 72.0
Msa0817900 MtrunA17_Chr1g0161701 31.677 161 59 4 1 117 631 784 4.02e-15 71.2
Msa0817900 MtrunA17_Chr1g0194101 27.692 195 87 6 1 146 119 308 5.95e-15 70.5
Msa0817900 MtrunA17_Chr4g0069241 25.641 195 91 5 1 146 118 307 1.71e-14 69.3
Msa0817900 MtrunA17_Chr2g0333691 31.447 159 54 4 1 115 173 320 2.06e-14 68.9
Msa0817900 MtrunA17_Chr5g0420171 42.391 92 47 3 1 92 550 635 2.62e-14 68.9
Msa0817900 MtrunA17_Chr5g0420151 42.391 92 47 3 1 92 572 657 4.06e-14 68.6
Msa0817900 MtrunA17_Chr5g0436931 54.386 57 26 0 92 148 1 57 9.03e-14 63.5
Msa0817900 MtrunA17_Chr2g0282831 28.571 168 64 3 1 122 721 878 9.46e-14 67.4
Msa0817900 MtrunA17_Chr2g0324931 28.994 169 63 3 1 122 745 903 1.02e-13 67.4
Msa0817900 MtrunA17_Chr4g0046511 27.976 168 65 3 1 122 749 906 1.73e-13 66.6
Msa0817900 MtrunA17_Chr4g0023071 26.543 162 62 4 1 117 546 695 1.77e-13 66.6
Msa0817900 MtrunA17_Chr5g0435031 27.976 168 68 4 1 122 118 278 2.55e-13 65.9
Msa0817900 MtrunA17_Chr1g0161721 32.624 141 48 3 18 113 645 783 2.70e-13 66.2
Msa0817900 MtrunA17_Chr4g0071221 28.049 164 66 4 1 119 590 746 3.39e-13 65.9
Msa0817900 MtrunA17_Chr1g0194541 28.049 164 67 4 1 119 342 499 6.05e-13 65.1
Msa0817900 MtrunA17_Chr8g0338531 33.588 131 77 5 3 131 509 631 9.29e-13 64.7
Msa0817900 MtrunA17_Chr7g0270121 28.049 164 67 4 1 119 431 588 9.52e-13 64.7
Msa0817900 MtrunA17_Chr8g0348661 24.257 202 86 5 1 146 536 726 1.27e-12 64.3
Msa0817900 MtrunA17_Chr8g0392271 28.571 161 64 4 1 117 630 783 1.89e-12 63.5
Msa0817900 MtrunA17_Chr5g0427001 38.053 113 54 5 18 121 134 239 2.01e-12 62.8
Msa0817900 MtrunA17_Chr1g0161711 31.429 140 50 3 18 113 638 775 2.42e-12 63.5
Msa0817900 MtrunA17_Chr5g0423891 35.165 91 47 3 3 92 216 295 2.59e-12 63.2
Msa0817900 MtrunA17_Chr4g0063251 34.375 96 52 3 1 92 153 241 2.60e-12 63.2
Msa0817900 MtrunA17_Chr5g0394381 40.000 90 43 3 3 92 547 625 2.80e-12 63.2
Msa0817900 MtrunA17_Chr8g0341011 26.064 188 72 5 3 143 623 790 3.98e-12 62.8
Msa0817900 MtrunA17_Chr8g0340931 25.287 174 74 3 1 129 618 780 4.13e-12 62.8
Msa0817900 MtrunA17_Chr8g0340891 38.710 93 44 3 1 92 616 696 4.17e-12 62.8
Msa0817900 MtrunA17_Chr4g0051961 32.203 118 69 5 1 114 923 1033 4.54e-12 62.8
Msa0817900 MtrunA17_Chr8g0340951 35.870 92 48 2 1 92 94 174 6.40e-12 60.8
Msa0817900 MtrunA17_Chr1g0158771 26.061 165 67 3 1 118 339 495 6.65e-12 62.0
Msa0817900 MtrunA17_Chr4g0025601 34.259 108 63 5 1 107 684 784 7.45e-12 62.0
Msa0817900 MtrunA17_Chr5g0439601 35.849 106 56 3 3 107 362 456 7.53e-12 62.0
Msa0817900 MtrunA17_Chr6g0464191 44.595 74 39 2 1 73 381 453 8.23e-12 61.6
Msa0817900 MtrunA17_Chr8g0340911 25.434 173 73 3 3 130 620 781 9.73e-12 61.6
Msa0817900 MtrunA17_Chr5g0439591 35.849 106 56 3 3 107 120 214 9.87e-12 61.2
Msa0817900 MtrunA17_Chr8g0341101 24.432 176 74 4 1 129 668 831 1.05e-11 61.6
Msa0817900 MtrunA17_Chr8g0340871 35.870 92 45 3 3 92 629 708 1.07e-11 61.6
Msa0817900 MtrunA17_Chr4g0063701 29.801 151 51 5 3 109 582 721 1.16e-11 61.2
Msa0817900 MtrunA17_Chr5g0439621 34.259 108 59 3 1 107 489 585 1.33e-11 61.2
Msa0817900 MtrunA17_Chr1g0175451 29.167 168 62 6 1 118 379 539 1.41e-11 61.2
Msa0817900 MtrunA17_Chr1g0159711 38.043 92 49 2 1 92 405 488 1.43e-11 61.2
Msa0817900 MtrunA17_Chr1g0175411 28.313 166 66 5 1 118 382 542 1.47e-11 61.2
Msa0817900 MtrunA17_Chr3g0104881 30.973 113 71 4 1 111 550 657 1.67e-11 60.8
Msa0817900 MtrunA17_Chr5g0434141 34.259 108 63 5 1 107 645 745 2.10e-11 60.8
Msa0817900 MtrunA17_Chr8g0340971 35.870 92 48 2 1 92 141 221 2.36e-11 59.7
Msa0817900 MtrunA17_Chr1g0175421 28.144 167 65 5 1 118 180 340 2.94e-11 60.1
Msa0817900 MtrunA17_Chr7g0251001 27.778 162 64 3 3 117 111 266 3.21e-11 60.1
Msa0817900 MtrunA17_Chr8g0340881 24.742 194 86 5 1 146 622 803 3.44e-11 60.1
Msa0817900 MtrunA17_Chr5g0437101 32.432 111 66 5 1 108 551 655 3.50e-11 60.1
Msa0817900 MtrunA17_Chr7g0236881 27.160 162 61 4 1 115 666 817 4.83e-11 59.7
Msa0817900 MtrunA17_Chr8g0380681 42.727 110 54 6 1 104 1030 1136 5.65e-11 59.3
Msa0817900 MtrunA17_Chr3g0113601 29.204 113 73 3 1 111 530 637 5.65e-11 59.3
Msa0817900 MtrunA17_Chr7g0251061 27.778 162 64 3 3 117 400 555 6.56e-11 59.3
Msa0817900 MtrunA17_Chr8g0340721 34.167 120 71 5 1 119 404 516 6.82e-11 59.3
Msa0817900 MtrunA17_Chr7g0219831 37.815 119 63 4 1 118 96 204 7.15e-11 58.9
Msa0817900 MtrunA17_Chr8g0338501 32.061 131 77 5 3 131 607 727 9.31e-11 58.9
Msa0817900 MtrunA17_Chr8g0341151 34.043 94 48 3 1 92 611 692 9.42e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817900 AT3G47570.1 34.171 199 79 2 1 147 754 952 5.33e-31 117
Msa0817900 AT3G47580.1 32.828 198 81 2 2 147 756 953 2.91e-29 112
Msa0817900 AT3G47090.1 31.156 199 85 2 1 147 753 951 7.15e-29 111
Msa0817900 AT5G39390.1 34.973 183 67 2 1 131 261 443 9.55e-25 99.0
Msa0817900 AT3G47110.1 32.804 189 75 2 1 137 771 959 1.11e-23 96.3
Msa0817900 AT5G20480.1 33.333 183 70 2 1 131 764 946 7.93e-23 94.0
Msa0817900 AT5G20480.2 33.333 183 70 2 1 131 764 946 7.93e-23 94.0
Msa0817900 AT2G24130.1 30.392 204 71 5 2 146 714 905 1.37e-17 79.0
Msa0817900 AT2G24130.2 30.392 204 71 5 2 146 729 920 1.46e-17 79.0
Msa0817900 AT5G65710.1 30.168 179 70 4 1 130 740 912 8.79e-17 76.6
Msa0817900 AT1G06700.1 28.824 170 69 3 1 123 120 284 4.03e-16 74.3
Msa0817900 AT1G06700.3 28.824 170 69 3 1 123 120 284 4.03e-16 74.3
Msa0817900 AT1G06700.2 28.824 170 69 3 1 123 120 284 4.03e-16 74.3
Msa0817900 AT1G48210.1 27.551 196 88 5 1 147 118 308 4.11e-16 74.3
Msa0817900 AT1G48210.7 27.551 196 88 5 1 147 118 308 4.11e-16 74.3
Msa0817900 AT1G48210.2 27.551 196 88 5 1 147 118 308 4.11e-16 74.3
Msa0817900 AT1G48210.3 27.551 196 88 5 1 147 118 308 4.11e-16 74.3
Msa0817900 AT3G59350.2 27.179 195 88 5 1 146 123 312 6.63e-16 73.6
Msa0817900 AT3G59350.6 27.179 195 88 5 1 146 180 369 6.86e-16 73.6
Msa0817900 AT3G59350.4 27.179 195 88 5 1 146 165 354 7.39e-16 73.6
Msa0817900 AT3G59350.3 27.179 195 88 5 1 146 165 354 8.15e-16 73.6
Msa0817900 AT3G59350.1 27.179 195 88 5 1 146 165 354 8.15e-16 73.6
Msa0817900 AT5G61480.1 26.702 191 87 5 1 146 776 958 1.15e-15 73.2
Msa0817900 AT2G30740.5 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.2 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.10 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.11 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.6 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.15 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.4 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.14 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.7 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.1 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.13 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.8 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.12 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.3 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT2G30740.9 26.667 195 89 5 1 146 123 312 1.87e-15 72.4
Msa0817900 AT1G48210.5 28.235 170 70 3 1 123 118 282 2.29e-15 71.6
Msa0817900 AT1G48210.4 28.235 170 70 3 1 123 118 282 2.29e-15 71.6
Msa0817900 AT1G48210.6 28.235 170 70 3 1 123 118 282 2.29e-15 71.6
Msa0817900 AT4G39400.1 28.497 193 83 6 1 147 934 1117 3.79e-15 72.0
Msa0817900 AT4G20270.1 26.554 177 74 3 1 131 763 929 9.05e-15 70.9
Msa0817900 AT4G28490.1 28.655 171 63 4 1 122 744 904 1.54e-14 70.1
Msa0817900 AT2G39180.1 29.944 177 80 8 1 149 572 732 2.40e-14 69.7
Msa0817900 AT4G02010.1 28.351 194 85 6 1 146 431 618 3.85e-14 68.9
Msa0817900 AT5G49660.1 28.421 190 77 6 1 144 716 892 4.06e-14 68.9
Msa0817900 AT1G28440.1 36.667 120 65 3 1 119 742 851 6.93e-14 68.2
Msa0817900 AT2G01820.1 36.111 108 61 5 1 107 638 738 2.61e-13 66.6
Msa0817900 AT3G59350.5 37.234 94 52 2 1 92 165 253 6.19e-13 64.7
Msa0817900 AT3G23750.1 28.221 163 62 5 1 117 631 784 1.35e-12 64.7
Msa0817900 AT2G43700.3 40.659 91 43 4 1 90 362 442 2.19e-12 63.9
Msa0817900 AT2G43700.5 40.659 91 43 4 1 90 362 442 2.19e-12 63.9
Msa0817900 AT2G43700.2 40.659 91 43 4 1 90 362 442 2.19e-12 63.9
Msa0817900 AT2G43700.4 40.659 91 43 4 1 90 362 442 2.19e-12 63.9
Msa0817900 AT2G43700.1 40.659 91 43 4 1 90 386 466 2.59e-12 63.5
Msa0817900 AT1G51940.1 34.167 120 71 4 1 119 388 500 2.69e-12 63.5
Msa0817900 AT1G66150.1 33.333 126 71 6 1 121 641 758 6.52e-12 62.4
Msa0817900 AT3G45410.1 39.623 106 51 5 1 104 393 487 1.33e-11 61.6
Msa0817900 AT1G66460.1 28.221 163 60 5 5 117 185 340 1.89e-11 61.2
Msa0817900 AT1G66460.3 27.811 169 65 5 5 123 212 373 1.99e-11 60.8
Msa0817900 AT5G46330.2 24.699 166 68 3 1 118 923 1079 3.32e-11 60.5
Msa0817900 AT5G46330.1 24.699 166 68 3 1 118 923 1079 3.32e-11 60.5
Msa0817900 AT4G00340.2 34.043 94 52 2 1 94 512 595 3.83e-11 60.5
Msa0817900 AT4G00340.1 34.043 94 52 2 1 94 533 616 3.84e-11 60.5
Msa0817900 AT1G11050.1 37.500 120 68 5 1 119 346 459 4.28e-11 60.1
Msa0817900 AT5G38260.1 30.380 158 53 3 3 113 373 520 4.77e-11 60.1
Msa0817900 AT1G66910.2 40.217 92 41 3 3 92 397 476 6.85e-11 59.7
Msa0817900 AT5G42120.1 29.412 153 86 5 1 141 420 562 7.23e-11 59.3
Msa0817900 AT1G66910.1 40.217 92 41 3 3 92 400 479 7.26e-11 59.3

Find 21 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGATGTCTACAACTA+TGG 0.282850 5_3:+53349324 Msa0817900:CDS
CTTTGTGTAAGGCTGCTATA+TGG 0.346913 5_3:-53348743 None:intergenic
TTGGAGATGCAAACCGGAAA+AGG 0.424405 5_3:+53349357 Msa0817900:CDS
GGTCTAAGCATATGTGAATT+CGG 0.441849 5_3:+53349405 Msa0817900:CDS
ACAATGAACTACAGCTTGCT+TGG 0.449929 5_3:-53348819 None:intergenic
AACCATTTCCTCACATTGAT+CGG 0.456688 5_3:-53348851 None:intergenic
AACACTTGAACAGAAGGATA+AGG 0.462140 5_3:-53348618 None:intergenic
CAATACTTAACCTTTGTGTA+AGG 0.473450 5_3:-53348754 None:intergenic
CATCTCCTTCTGCTGATACA+AGG 0.475845 5_3:-53349311 None:intergenic
ACACTTGAACAGAAGGATAA+GGG 0.479596 5_3:-53348617 None:intergenic
CATATGTGAATTCGGTAAGA+AGG 0.481253 5_3:+53349413 Msa0817900:CDS
GGACCAACTGATATCACGTT+TGG 0.489194 5_3:+53349378 Msa0817900:CDS
ATCTCCTTCTGCTGATACAA+GGG 0.535311 5_3:-53349310 None:intergenic
TCTCGATGTAGCTCGCGCAT+TGG 0.537349 5_3:+53348778 Msa0817900:CDS
ACAATCAACACTTGAACAGA+AGG 0.565063 5_3:-53348624 None:intergenic
ATATGTGAATTCGGTAAGAA+GGG 0.566309 5_3:+53349414 Msa0817900:CDS
AACTGATATCACGTTTGGTG+AGG 0.573202 5_3:+53349383 Msa0817900:CDS
CATATAGCAGCCTTACACAA+AGG 0.596374 5_3:+53348744 Msa0817900:CDS
GTGGCCCTTGTATCAGCAGA+AGG 0.603282 5_3:+53349306 Msa0817900:CDS
TCACCAAACGTGATATCAGT+TGG 0.625439 5_3:-53349381 None:intergenic
ACTGATATCACGTTTGGTGA+GGG 0.627225 5_3:+53349384 Msa0817900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAGGAAAAAATTAGAAA+AGG - chr5_3:53349250-53349269 None:intergenic 15.0%
!! ATTTAGGAAAAAATTAGAAA+AGG - chr5_3:53349250-53349269 None:intergenic 15.0%
!!! TAACTTTTGAAAAATCACAT+TGG + chr5_3:53349142-53349161 Msa0817900:intron 20.0%
!!! TTTTCCTAAATAAATGTTGT+TGG + chr5_3:53349259-53349278 Msa0817900:intron 20.0%
!! AATTCCAACAACATTTATTT+AGG - chr5_3:53349266-53349285 None:intergenic 20.0%
!! AAATAAATGTTGTTGGAATT+TGG + chr5_3:53349266-53349285 Msa0817900:intron 20.0%
!!! TAACTTTTGAAAAATCACAT+TGG + chr5_3:53349142-53349161 Msa0817900:intron 20.0%
!!! TTTTCCTAAATAAATGTTGT+TGG + chr5_3:53349259-53349278 Msa0817900:intron 20.0%
!! AATTCCAACAACATTTATTT+AGG - chr5_3:53349266-53349285 None:intergenic 20.0%
!! AAATAAATGTTGTTGGAATT+TGG + chr5_3:53349266-53349285 Msa0817900:intron 20.0%
!! TACTAGCTTATGAAATTCAT+TGG - chr5_3:53349011-53349030 None:intergenic 25.0%
!!! ATTTGTTTTTAGCACTTGTT+TGG + chr5_3:53349058-53349077 Msa0817900:intron 25.0%
! ACTTAACCAATATACAATTG+TGG + chr5_3:53349212-53349231 Msa0817900:intron 25.0%
!! TACTAGCTTATGAAATTCAT+TGG - chr5_3:53349011-53349030 None:intergenic 25.0%
!!! ATTTGTTTTTAGCACTTGTT+TGG + chr5_3:53349058-53349077 Msa0817900:intron 25.0%
! ACTTAACCAATATACAATTG+TGG + chr5_3:53349212-53349231 Msa0817900:intron 25.0%
! TTGTAGTGATGAAGTTTTCA+AGG + chr5_3:53348643-53348662 Msa0817900:CDS 30.0%
CAATACTTAACCTTTGTGTA+AGG - chr5_3:53348757-53348776 None:intergenic 30.0%
TAATCCAAAATCTCCTAAGT+AGG - chr5_3:53348878-53348897 None:intergenic 30.0%
! TCTTGTCATTTACATCAGAT+AGG + chr5_3:53348935-53348954 Msa0817900:intron 30.0%
! TTAGCACTTGTTTGGTAATA+CGG + chr5_3:53349066-53349085 Msa0817900:intron 30.0%
! TATCTTTTGCAAATTCACCT+TGG - chr5_3:53349115-53349134 None:intergenic 30.0%
! ATATTGGTTAAGTGCATGTT+TGG - chr5_3:53349205-53349224 None:intergenic 30.0%
TCTCAACCACAATTGTATAT+TGG - chr5_3:53349221-53349240 None:intergenic 30.0%
! CAACTATGGAATTCTTTTGT+TGG + chr5_3:53349338-53349357 Msa0817900:CDS 30.0%
ATATGTGAATTCGGTAAGAA+GGG + chr5_3:53349414-53349433 Msa0817900:CDS 30.0%
! TTGTAGTGATGAAGTTTTCA+AGG + chr5_3:53348643-53348662 Msa0817900:CDS 30.0%
CAATACTTAACCTTTGTGTA+AGG - chr5_3:53348757-53348776 None:intergenic 30.0%
TAATCCAAAATCTCCTAAGT+AGG - chr5_3:53348878-53348897 None:intergenic 30.0%
! TCTTGTCATTTACATCAGAT+AGG + chr5_3:53348935-53348954 Msa0817900:intron 30.0%
! TTAGCACTTGTTTGGTAATA+CGG + chr5_3:53349066-53349085 Msa0817900:intron 30.0%
! TATCTTTTGCAAATTCACCT+TGG - chr5_3:53349115-53349134 None:intergenic 30.0%
! ATATTGGTTAAGTGCATGTT+TGG - chr5_3:53349205-53349224 None:intergenic 30.0%
TCTCAACCACAATTGTATAT+TGG - chr5_3:53349221-53349240 None:intergenic 30.0%
! CAACTATGGAATTCTTTTGT+TGG + chr5_3:53349338-53349357 Msa0817900:CDS 30.0%
ATATGTGAATTCGGTAAGAA+GGG + chr5_3:53349414-53349433 Msa0817900:CDS 30.0%
ACACTTGAACAGAAGGATAA+GGG - chr5_3:53348620-53348639 None:intergenic 35.0%
AACACTTGAACAGAAGGATA+AGG - chr5_3:53348621-53348640 None:intergenic 35.0%
ACAATCAACACTTGAACAGA+AGG - chr5_3:53348627-53348646 None:intergenic 35.0%
!!! TGTTTTTGAGTTCATGCCTA+TGG + chr5_3:53348670-53348689 Msa0817900:CDS 35.0%
!!! GTTTTTGAGTTCATGCCTAT+GGG + chr5_3:53348671-53348690 Msa0817900:CDS 35.0%
!!! TTTTTGAGTTCATGCCTATG+GGG + chr5_3:53348672-53348691 Msa0817900:CDS 35.0%
! AAACATTTTAGACTCCCCAT+AGG - chr5_3:53348689-53348708 None:intergenic 35.0%
ATATTAAGCCGATCAATGTG+AGG + chr5_3:53348843-53348862 Msa0817900:intron 35.0%
AACCATTTCCTCACATTGAT+CGG - chr5_3:53348854-53348873 None:intergenic 35.0%
!!! TAGGAGATTTTGGATTAGCT+AGG + chr5_3:53348881-53348900 Msa0817900:intron 35.0%
!!! TTTTTGTTATTGCCCCAAGA+AGG - chr5_3:53348909-53348928 None:intergenic 35.0%
TCTTGGGGCAATAACAAAAA+AGG + chr5_3:53348909-53348928 Msa0817900:intron 35.0%
! TTGGAATTTGGAACAGAGTA+TGG + chr5_3:53349278-53349297 Msa0817900:intron 35.0%
! TTTGGAACAGAGTATGGATT+AGG + chr5_3:53349284-53349303 Msa0817900:intron 35.0%
GGTCTAAGCATATGTGAATT+CGG + chr5_3:53349405-53349424 Msa0817900:CDS 35.0%
CATATGTGAATTCGGTAAGA+AGG + chr5_3:53349413-53349432 Msa0817900:CDS 35.0%
! ACTATCTCAGTGATTTTGTC+TGG - chr5_3:53349444-53349463 None:intergenic 35.0%
ACACTTGAACAGAAGGATAA+GGG - chr5_3:53348620-53348639 None:intergenic 35.0%
AACACTTGAACAGAAGGATA+AGG - chr5_3:53348621-53348640 None:intergenic 35.0%
ACAATCAACACTTGAACAGA+AGG - chr5_3:53348627-53348646 None:intergenic 35.0%
!!! TGTTTTTGAGTTCATGCCTA+TGG + chr5_3:53348670-53348689 Msa0817900:CDS 35.0%
!!! GTTTTTGAGTTCATGCCTAT+GGG + chr5_3:53348671-53348690 Msa0817900:CDS 35.0%
!!! TTTTTGAGTTCATGCCTATG+GGG + chr5_3:53348672-53348691 Msa0817900:CDS 35.0%
! AAACATTTTAGACTCCCCAT+AGG - chr5_3:53348689-53348708 None:intergenic 35.0%
ATATTAAGCCGATCAATGTG+AGG + chr5_3:53348843-53348862 Msa0817900:intron 35.0%
AACCATTTCCTCACATTGAT+CGG - chr5_3:53348854-53348873 None:intergenic 35.0%
!!! TAGGAGATTTTGGATTAGCT+AGG + chr5_3:53348881-53348900 Msa0817900:intron 35.0%
!!! TTTTTGTTATTGCCCCAAGA+AGG - chr5_3:53348909-53348928 None:intergenic 35.0%
TCTTGGGGCAATAACAAAAA+AGG + chr5_3:53348909-53348928 Msa0817900:intron 35.0%
! TTGGAATTTGGAACAGAGTA+TGG + chr5_3:53349278-53349297 Msa0817900:intron 35.0%
! TTTGGAACAGAGTATGGATT+AGG + chr5_3:53349284-53349303 Msa0817900:intron 35.0%
GGTCTAAGCATATGTGAATT+CGG + chr5_3:53349405-53349424 Msa0817900:CDS 35.0%
CATATGTGAATTCGGTAAGA+AGG + chr5_3:53349413-53349432 Msa0817900:CDS 35.0%
! ACTATCTCAGTGATTTTGTC+TGG - chr5_3:53349444-53349463 None:intergenic 35.0%
CTTTGTGTAAGGCTGCTATA+TGG - chr5_3:53348746-53348765 None:intergenic 40.0%
CATATAGCAGCCTTACACAA+AGG + chr5_3:53348744-53348763 Msa0817900:CDS 40.0%
! ACAATGAACTACAGCTTGCT+TGG - chr5_3:53348822-53348841 None:intergenic 40.0%
! GTTGCCTACTTAGGAGATTT+TGG + chr5_3:53348871-53348890 Msa0817900:intron 40.0%
! GATTAGCTAGGTTCCTTCTT+GGG + chr5_3:53348893-53348912 Msa0817900:intron 40.0%
ATTAGCTAGGTTCCTTCTTG+GGG + chr5_3:53348894-53348913 Msa0817900:intron 40.0%
! CACTTGTTTGGTAATACGGT+AGG + chr5_3:53349070-53349089 Msa0817900:intron 40.0%
ACGGTAGGTTTCCAAAATCA+TGG + chr5_3:53349085-53349104 Msa0817900:intron 40.0%
ATCTCCTTCTGCTGATACAA+GGG - chr5_3:53349313-53349332 None:intergenic 40.0%
GAAGGAGATGTCTACAACTA+TGG + chr5_3:53349324-53349343 Msa0817900:CDS 40.0%
! CTTTTGTTGGAGATGCAAAC+CGG + chr5_3:53349351-53349370 Msa0817900:CDS 40.0%
! GATATCAGTTGGTCCTTTTC+CGG - chr5_3:53349373-53349392 None:intergenic 40.0%
TCACCAAACGTGATATCAGT+TGG - chr5_3:53349384-53349403 None:intergenic 40.0%
! AACTGATATCACGTTTGGTG+AGG + chr5_3:53349383-53349402 Msa0817900:CDS 40.0%
! ACTGATATCACGTTTGGTGA+GGG + chr5_3:53349384-53349403 Msa0817900:CDS 40.0%
CTTTGTGTAAGGCTGCTATA+TGG - chr5_3:53348746-53348765 None:intergenic 40.0%
CATATAGCAGCCTTACACAA+AGG + chr5_3:53348744-53348763 Msa0817900:CDS 40.0%
! ACAATGAACTACAGCTTGCT+TGG - chr5_3:53348822-53348841 None:intergenic 40.0%
! GTTGCCTACTTAGGAGATTT+TGG + chr5_3:53348871-53348890 Msa0817900:intron 40.0%
! GATTAGCTAGGTTCCTTCTT+GGG + chr5_3:53348893-53348912 Msa0817900:intron 40.0%
ATTAGCTAGGTTCCTTCTTG+GGG + chr5_3:53348894-53348913 Msa0817900:intron 40.0%
! CACTTGTTTGGTAATACGGT+AGG + chr5_3:53349070-53349089 Msa0817900:intron 40.0%
ACGGTAGGTTTCCAAAATCA+TGG + chr5_3:53349085-53349104 Msa0817900:intron 40.0%
ATCTCCTTCTGCTGATACAA+GGG - chr5_3:53349313-53349332 None:intergenic 40.0%
GAAGGAGATGTCTACAACTA+TGG + chr5_3:53349324-53349343 Msa0817900:CDS 40.0%
! CTTTTGTTGGAGATGCAAAC+CGG + chr5_3:53349351-53349370 Msa0817900:CDS 40.0%
! GATATCAGTTGGTCCTTTTC+CGG - chr5_3:53349373-53349392 None:intergenic 40.0%
TCACCAAACGTGATATCAGT+TGG - chr5_3:53349384-53349403 None:intergenic 40.0%
! AACTGATATCACGTTTGGTG+AGG + chr5_3:53349383-53349402 Msa0817900:CDS 40.0%
! ACTGATATCACGTTTGGTGA+GGG + chr5_3:53349384-53349403 Msa0817900:CDS 40.0%
AGCCGATCAATGTGAGGAAA+TGG + chr5_3:53348849-53348868 Msa0817900:intron 45.0%
GAGGAAATGGTTGCCTACTT+AGG + chr5_3:53348862-53348881 Msa0817900:intron 45.0%
!! GGATTAGCTAGGTTCCTTCT+TGG + chr5_3:53348892-53348911 Msa0817900:intron 45.0%
TCCAAAATCATGGTGAGCCA+AGG + chr5_3:53349095-53349114 Msa0817900:intron 45.0%
! ACCTTGGCTCACCATGATTT+TGG - chr5_3:53349099-53349118 None:intergenic 45.0%
!! GGAACAGAGTATGGATTAGG+TGG + chr5_3:53349287-53349306 Msa0817900:intron 45.0%
CATCTCCTTCTGCTGATACA+AGG - chr5_3:53349314-53349333 None:intergenic 45.0%
TTGGAGATGCAAACCGGAAA+AGG + chr5_3:53349357-53349376 Msa0817900:CDS 45.0%
GGACCAACTGATATCACGTT+TGG + chr5_3:53349378-53349397 Msa0817900:CDS 45.0%
AGCCGATCAATGTGAGGAAA+TGG + chr5_3:53348849-53348868 Msa0817900:intron 45.0%
GAGGAAATGGTTGCCTACTT+AGG + chr5_3:53348862-53348881 Msa0817900:intron 45.0%
!! GGATTAGCTAGGTTCCTTCT+TGG + chr5_3:53348892-53348911 Msa0817900:intron 45.0%
TCCAAAATCATGGTGAGCCA+AGG + chr5_3:53349095-53349114 Msa0817900:intron 45.0%
! ACCTTGGCTCACCATGATTT+TGG - chr5_3:53349099-53349118 None:intergenic 45.0%
!! GGAACAGAGTATGGATTAGG+TGG + chr5_3:53349287-53349306 Msa0817900:intron 45.0%
CATCTCCTTCTGCTGATACA+AGG - chr5_3:53349314-53349333 None:intergenic 45.0%
TTGGAGATGCAAACCGGAAA+AGG + chr5_3:53349357-53349376 Msa0817900:CDS 45.0%
GGACCAACTGATATCACGTT+TGG + chr5_3:53349378-53349397 Msa0817900:CDS 45.0%
TCTCGATGTAGCTCGCGCAT+TGG + chr5_3:53348778-53348797 Msa0817900:CDS 55.0%
GTGGCCCTTGTATCAGCAGA+AGG + chr5_3:53349306-53349325 Msa0817900:CDS 55.0%
TCTCGATGTAGCTCGCGCAT+TGG + chr5_3:53348778-53348797 Msa0817900:CDS 55.0%
GTGGCCCTTGTATCAGCAGA+AGG + chr5_3:53349306-53349325 Msa0817900:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53348593 53349488 53348593 ID=Msa0817900;Name=Msa0817900
chr5_3 mRNA 53348593 53349488 53348593 ID=Msa0817900-mRNA-1;Parent=Msa0817900;Name=Msa0817900-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|149
chr5_3 exon 53348593 53348859 53348593 ID=Msa0817900-mRNA-1:exon:16081;Parent=Msa0817900-mRNA-1
chr5_3 exon 53349306 53349488 53349306 ID=Msa0817900-mRNA-1:exon:16082;Parent=Msa0817900-mRNA-1
chr5_3 CDS 53348593 53348859 53348593 ID=Msa0817900-mRNA-1:cds;Parent=Msa0817900-mRNA-1
chr5_3 CDS 53349306 53349488 53349306 ID=Msa0817900-mRNA-1:cds;Parent=Msa0817900-mRNA-1
Gene Sequence

>Msa0817900

ATGAAGCATCAAAATCTTCTCAAGCCCTTATCCTTCTGTTCAAGTGTTGATTGTAGTGATGAAGTTTTCAAGGCTATTGTTTTTGAGTTCATGCCTATGGGGAGTCTAAAATGTTTGTTACACAACAGTAAACAAATTGACTTGAGAAATCCATATAGCAGCCTTACACAAAGGTTAAGTATTGCTCTCGATGTAGCTCGCGCATTGGATTATCTTCACAACAATTCCAAGCAAGCTGTAGTTCATTGTGATATTAAGCCGATCAATGTGGCCCTTGTATCAGCAGAAGGAGATGTCTACAACTATGGAATTCTTTTGTTGGAGATGCAAACCGGAAAAGGACCAACTGATATCACGTTTGGTGAGGGTCTAAGCATATGTGAATTCGGTAAGAAGGGAATTCCAGACAAAATCACTGAGATAGTAGAAACACAATTGCTCATGCCATAG
Protein sequence

>Msa0817900

MKHQNLLKPLSFCSSVDCSDEVFKAIVFEFMPMGSLKCLLHNSKQIDLRNPYSSLTQRLSIALDVARALDYLHNNSKQAVVHCDIKPINVALVSAEGDVYNYGILLLEMQTGKGPTDITFGEGLSICEFGKKGIPDKITEIVETQLLMP*