Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818100 | sp|O04235|SSRP1_VICFA | 87.017 | 647 | 78 | 3 | 1 | 646 | 1 | 642 | 0.0 | 1103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818100 | G7KH07 | 98.302 | 648 | 9 | 1 | 1 | 646 | 1 | 648 | 0.0 | 1307 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0818100 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818100 | MtrunA17_Chr5g0437031 | 98.302 | 648 | 9 | 1 | 1 | 646 | 1 | 648 | 0.0 | 1307 |
| Msa0818100 | MtrunA17_Chr1g0155251 | 89.164 | 646 | 67 | 1 | 1 | 646 | 1 | 643 | 0.0 | 1112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818100 | AT3G28730.1 | 75.809 | 649 | 149 | 5 | 1 | 645 | 1 | 645 | 0.0 | 926 |
Find 171 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTAAGCCTGGAAAATTT+AGG | 0.219977 | 5_3:-53557101 | Msa0818100:CDS |
| ACAGTATTACGTGGCTTGTC+TGG | 0.233775 | 5_3:-53557132 | Msa0818100:CDS |
| CAGCTATTCCAAAGGTGTTT+TGG | 0.237219 | 5_3:+53559152 | None:intergenic |
| GGGTCTCCTACTGATGATTC+TGG | 0.258546 | 5_3:-53556033 | Msa0818100:CDS |
| AGTGAATTTAACAAGTTATT+AGG | 0.272546 | 5_3:+53555036 | None:intergenic |
| GTAATAAGAGTGGGAGGTTT+AGG | 0.273213 | 5_3:+53556991 | None:intergenic |
| ATTCCCCTCTTGGGTGCATT+TGG | 0.275228 | 5_3:+53555737 | None:intergenic |
| TAATCCTGGGATTTCATTTA+CGG | 0.275475 | 5_3:-53555530 | Msa0818100:CDS |
| TTTCTGTTAGCGGGCGCAAT+TGG | 0.275567 | 5_3:-53559114 | Msa0818100:CDS |
| AGGAAATATGCTGGCTTTCA+TGG | 0.282409 | 5_3:-53558599 | Msa0818100:CDS |
| GATGCTGTTGTTACATTTGA+TGG | 0.292831 | 5_3:-53558077 | Msa0818100:CDS |
| GGGTGTTGGAATTCGGTATA+TGG | 0.303438 | 5_3:+53558270 | None:intergenic |
| TGGGGAGAAGTTGATTTAAA+TGG | 0.308241 | 5_3:-53559094 | Msa0818100:intron |
| TGCTTGAGTAAATATTTAAT+TGG | 0.318899 | 5_3:+53554930 | None:intergenic |
| TTAGAAGACAGATCCTTCTT+TGG | 0.323308 | 5_3:+53555848 | None:intergenic |
| TTCTGTTAGCGGGCGCAATT+GGG | 0.325415 | 5_3:-53559113 | Msa0818100:CDS |
| AAATTCACTGGAATGTTCTC+TGG | 0.326758 | 5_3:-53555022 | Msa0818100:three_prime_UTR |
| ACACCAAGTTGATTACTCTT+TGG | 0.336794 | 5_3:+53559436 | None:intergenic |
| GGCTTGAAAATTATGCATTT+AGG | 0.341853 | 5_3:-53556619 | Msa0818100:CDS |
| AAAGAAGGATCTGTCTTCTA+AGG | 0.353142 | 5_3:-53555846 | Msa0818100:CDS |
| GTCGAACTACACTGCTATAC+TGG | 0.359472 | 5_3:+53557825 | None:intergenic |
| CAGATTGGAGTTGTCGTATA+AGG | 0.360980 | 5_3:-53557374 | Msa0818100:intron |
| CAACCGATGAATATTGATTC+AGG | 0.372802 | 5_3:-53555254 | Msa0818100:CDS |
| TAATAACTTGTTAAATTCAC+TGG | 0.383150 | 5_3:-53555034 | Msa0818100:three_prime_UTR |
| CAAAATTACTTGGAGAGAAC+TGG | 0.390368 | 5_3:-53555501 | Msa0818100:CDS |
| ATACTGTGGTGAACACTTCA+TGG | 0.393386 | 5_3:+53557148 | None:intergenic |
| CAGTATTACGTGGCTTGTCT+GGG | 0.395701 | 5_3:-53557131 | Msa0818100:CDS |
| AACGAGTACCACAATTTGTA+TGG | 0.395792 | 5_3:-53556741 | Msa0818100:CDS |
| TCTCTGGGGTTGGTTATAGA+AGG | 0.397532 | 5_3:-53555006 | Msa0818100:three_prime_UTR |
| CTGTCATTCTTGCGGCTTCA+AGG | 0.398065 | 5_3:-53557869 | Msa0818100:CDS |
| TAAAATGTTACCTCGGTGTA+AGG | 0.403709 | 5_3:+53558045 | None:intergenic |
| GCACCCAAGAGGGGAATGTC+TGG | 0.406706 | 5_3:-53555731 | Msa0818100:CDS |
| ACAAACTGGGTGTTGGAATT+CGG | 0.407573 | 5_3:+53558263 | None:intergenic |
| ATTTAATTGGTGGAAAATTG+TGG | 0.417351 | 5_3:+53554943 | None:intergenic |
| GCGCACGAACAGAAGCTAAC+TGG | 0.418279 | 5_3:+53555185 | None:intergenic |
| ATTACCTGCATCACAATATG+AGG | 0.420402 | 5_3:+53557555 | None:intergenic |
| GTTCTTTCATTCCTGCGATC+AGG | 0.422674 | 5_3:-53560610 | Msa0818100:five_prime_UTR |
| TTTAATTGGTGGAAAATTGT+GGG | 0.423365 | 5_3:+53554944 | None:intergenic |
| ACGGATGTGGCAAAATTACT+TGG | 0.423556 | 5_3:-53555511 | Msa0818100:CDS |
| GAATCCAGACATTCCCCTCT+TGG | 0.427330 | 5_3:+53555727 | None:intergenic |
| AATTCCAACACCCAGTTTGT+TGG | 0.433634 | 5_3:-53558260 | Msa0818100:CDS |
| ATCTCAGAAAGATTCGTTGA+TGG | 0.433640 | 5_3:-53558303 | Msa0818100:intron |
| ACTGGAATGTTCTCTGGGGT+TGG | 0.437451 | 5_3:-53555016 | Msa0818100:three_prime_UTR |
| AATATAAAGAAAGCTAATCC+TGG | 0.438071 | 5_3:-53555544 | Msa0818100:CDS |
| TTCTCTGAATATTACGAAAG+AGG | 0.438473 | 5_3:+53556763 | None:intergenic |
| ATTCTTGCGGCTTCAAGGAC+AGG | 0.439827 | 5_3:-53557864 | Msa0818100:CDS |
| TGAAAATTGCCCACCTGCTC+AGG | 0.441127 | 5_3:-53558234 | Msa0818100:intron |
| CTTGGTGTTCAGATCAAAGA+TGG | 0.447302 | 5_3:-53559421 | Msa0818100:CDS |
| AGCCACACCAGTAGTTGGTT+GGG | 0.447410 | 5_3:+53556591 | None:intergenic |
| AATATCACCCTCGGCGGCCG+TGG | 0.452177 | 5_3:-53560558 | Msa0818100:CDS |
| AATCCAGACATTCCCCTCTT+GGG | 0.456255 | 5_3:+53555728 | None:intergenic |
| GTCTCACAAACTAACCTTCA+AGG | 0.456533 | 5_3:-53558538 | Msa0818100:CDS |
| GGTCTCCTACTGATGATTCT+GGG | 0.456976 | 5_3:-53556032 | Msa0818100:CDS |
| TGAAGACTTCGTTGCCGAAA+AGG | 0.457341 | 5_3:-53556064 | Msa0818100:CDS |
| AATTCACTGGAATGTTCTCT+GGG | 0.458380 | 5_3:-53555021 | Msa0818100:three_prime_UTR |
| ATTCACTGGATTTCGTGATC+AGG | 0.458777 | 5_3:-53559386 | Msa0818100:intron |
| GTACCCTCATATTGTGATGC+AGG | 0.458886 | 5_3:-53557559 | Msa0818100:intron |
| TGGGATTTCATTTACGGATG+TGG | 0.460128 | 5_3:-53555524 | Msa0818100:CDS |
| CACCTTTGGAATAGCTGTAA+AGG | 0.461017 | 5_3:-53559146 | Msa0818100:CDS |
| TTCCATGTGGATGACACAAC+TGG | 0.462015 | 5_3:-53558493 | Msa0818100:CDS |
| CTTCTCTTGTGATAAATTGA+CGG | 0.464287 | 5_3:-53555081 | Msa0818100:three_prime_UTR |
| GGGGCCAAAGTTACTAAGCC+TGG | 0.468481 | 5_3:-53557111 | Msa0818100:CDS |
| GGGTTGTTCTACAAATTCAC+TGG | 0.469635 | 5_3:-53559400 | Msa0818100:CDS |
| ACCTGAACATGCAGTTCAAA+GGG | 0.471466 | 5_3:-53556640 | Msa0818100:intron |
| CAGTGCCGCCACGGCCGCCG+AGG | 0.472499 | 5_3:+53560550 | None:intergenic |
| CCTCTTTCTCATCACCACTT+TGG | 0.473171 | 5_3:+53555989 | None:intergenic |
| TCATCTCTGAAAGCTGAAGA+TGG | 0.473971 | 5_3:-53557051 | Msa0818100:CDS |
| TGATCGGGGTTGCAGAATCC+GGG | 0.479043 | 5_3:-53559565 | Msa0818100:intron |
| ACCTTAGCCACACCAGTAGT+TGG | 0.481295 | 5_3:+53556586 | None:intergenic |
| GTTGCCGAAAAGGACGATGA+AGG | 0.482808 | 5_3:-53556054 | Msa0818100:CDS |
| TTCCATTTCAGGAAATATGC+TGG | 0.483906 | 5_3:-53558608 | Msa0818100:intron |
| TTATGTGGTTGAAAGTGAAT+TGG | 0.487973 | 5_3:-53557434 | Msa0818100:CDS |
| GAATCAATATTCATCGGTTG+TGG | 0.489399 | 5_3:+53555257 | None:intergenic |
| TTGAGTAAATATTTAATTGG+TGG | 0.489927 | 5_3:+53554933 | None:intergenic |
| AGAAGCAACTTTCTGTTAGC+GGG | 0.495842 | 5_3:-53559123 | Msa0818100:CDS |
| GTGGCCGACGTTGGTGTTGG+AGG | 0.496458 | 5_3:-53558104 | Msa0818100:CDS |
| ATGAAAGGCAAATAACATAT+AGG | 0.496763 | 5_3:-53555144 | Msa0818100:three_prime_UTR |
| TGGTGTGGCTAAGGTTCTTG+AGG | 0.498002 | 5_3:-53556578 | Msa0818100:CDS |
| ATCACCCTCGGCGGCCGTGG+CGG | 0.500153 | 5_3:-53560555 | Msa0818100:CDS |
| ATTCTATAGATATACCTCAT+TGG | 0.500824 | 5_3:+53558468 | None:intergenic |
| GGTGTGGCTAAGGTTCTTGA+GGG | 0.503505 | 5_3:-53556577 | Msa0818100:CDS |
| TATTACGAAAGAGGTGCTCT+TGG | 0.505169 | 5_3:+53556772 | None:intergenic |
| CTCTAAGTACAAAGACAGAT+TGG | 0.506656 | 5_3:-53557389 | Msa0818100:CDS |
| ATCACCAACAAACTGGGTGT+TGG | 0.507629 | 5_3:+53558256 | None:intergenic |
| ACCAACTACTGGTGTGGCTA+AGG | 0.508426 | 5_3:-53556587 | Msa0818100:CDS |
| TTTATGGTTGCTATCATGAA+AGG | 0.508792 | 5_3:-53555159 | Msa0818100:three_prime_UTR |
| AGCTTTCGAAGTGCCTTTAG+CGG | 0.509555 | 5_3:-53558563 | Msa0818100:CDS |
| GAGAAGCAACTTTCTGTTAG+CGG | 0.514450 | 5_3:-53559124 | Msa0818100:CDS |
| GTTTGTGAGACGTCCGCTAA+AGG | 0.515987 | 5_3:+53558550 | None:intergenic |
| CTTGAAGCCGCAAGAATGAC+AGG | 0.517227 | 5_3:+53557870 | None:intergenic |
| TTCTGACTAGATTGACTATG+TGG | 0.520017 | 5_3:-53556865 | Msa0818100:intron |
| AATATGCTGGCTTTCATGGT+TGG | 0.520470 | 5_3:-53558595 | Msa0818100:CDS |
| CTCAATGTTAAAGCAGCCTT+AGG | 0.523098 | 5_3:+53555214 | None:intergenic |
| GTGAACAAACTCACCTGAGC+AGG | 0.527575 | 5_3:+53558221 | None:intergenic |
| AGTGCCGCCACGGCCGCCGA+GGG | 0.528777 | 5_3:+53560551 | None:intergenic |
| CCAAAGTGGTGATGAGAAAG+AGG | 0.530710 | 5_3:-53555989 | Msa0818100:intron |
| TAGCCACACCAGTAGTTGGT+TGG | 0.530732 | 5_3:+53556590 | None:intergenic |
| TACCTGAACATGCAGTTCAA+AGG | 0.530797 | 5_3:-53556641 | Msa0818100:intron |
| CTCTTCAACAATATCACCCT+CGG | 0.531775 | 5_3:-53560567 | Msa0818100:CDS |
| TGATAAAACCATACAAATTG+TGG | 0.532500 | 5_3:+53556733 | None:intergenic |
| TTTCCTGAATCAATATTCAT+CGG | 0.535542 | 5_3:+53555251 | None:intergenic |
| CTCCTTTACAGCTATTCCAA+AGG | 0.535595 | 5_3:+53559144 | None:intergenic |
| TCATGATAGCAACCATAAAA+CGG | 0.538141 | 5_3:+53555163 | None:intergenic |
| AACAAACTCACCTGAGCAGG+TGG | 0.540462 | 5_3:+53558224 | None:intergenic |
| GGAGATGCCCAACCAACTAC+TGG | 0.540924 | 5_3:-53556598 | Msa0818100:CDS |
| TCAAAAGATGCAGATGAAGA+TGG | 0.544147 | 5_3:-53555791 | Msa0818100:CDS |
| GAATTTGAGCGACATGCTGC+TGG | 0.545421 | 5_3:-53556843 | Msa0818100:CDS |
| TCTAAATTTCTAAATGACGA+TGG | 0.545702 | 5_3:-53555104 | Msa0818100:three_prime_UTR |
| TCTGTGGCCGACGTTGGTGT+TGG | 0.546144 | 5_3:-53558107 | Msa0818100:CDS |
| AATGAATCTGACAGTGCCTA+AGG | 0.547696 | 5_3:-53555230 | Msa0818100:exon |
| AAATTTAGGAGTTGTCAAGA+TGG | 0.550659 | 5_3:-53557087 | Msa0818100:CDS |
| CACTCTTATTACTCATGAAG+AGG | 0.552138 | 5_3:-53556980 | Msa0818100:intron |
| TTGCCGAAAAGGACGATGAA+GGG | 0.553982 | 5_3:-53556053 | Msa0818100:CDS |
| CTTTCATTCCTGCGATCAGG+CGG | 0.557954 | 5_3:-53560607 | Msa0818100:five_prime_UTR |
| GGATCCAAATGCACCCAAGA+GGG | 0.558632 | 5_3:-53555741 | Msa0818100:CDS |
| TTTCTGATGCGCTCAAGATG+TGG | 0.559322 | 5_3:+53556532 | None:intergenic |
| ATGAAAGAACGAAGGTTGGT+TGG | 0.562886 | 5_3:+53560623 | None:intergenic |
| AGTTACACCTGTCATTCTTG+CGG | 0.563102 | 5_3:-53557877 | Msa0818100:CDS |
| AGTGAGCGTGACATGGATGA+AGG | 0.565116 | 5_3:-53559461 | Msa0818100:CDS |
| ATATAAAGAAAGCTAATCCT+GGG | 0.568398 | 5_3:-53555543 | Msa0818100:CDS |
| AAAGAAGAAGCTCTTCTCAA+GGG | 0.568660 | 5_3:+53557017 | None:intergenic |
| GGGTTGGTTATAGAAGGATG+AGG | 0.568731 | 5_3:-53555000 | Msa0818100:three_prime_UTR |
| CAAGTTATTAGGTCATCCCT+AGG | 0.569376 | 5_3:+53555047 | None:intergenic |
| TTTGAGCGACATGCTGCTGG+TGG | 0.569661 | 5_3:-53556840 | Msa0818100:CDS |
| CCGTAATAAAATAATGTCTG+TGG | 0.570681 | 5_3:-53558123 | Msa0818100:CDS |
| TCTCACAAACTAACCTTCAA+GGG | 0.570778 | 5_3:-53558537 | Msa0818100:CDS |
| CTCCAGTTGTGTCATCCACA+TGG | 0.578099 | 5_3:+53558491 | None:intergenic |
| GAAAGAAGAAGCTCTTCTCA+AGG | 0.578564 | 5_3:+53557016 | None:intergenic |
| TGAATGTACAGCTGAGGAGA+AGG | 0.578829 | 5_3:-53555351 | Msa0818100:intron |
| CTAATAACGACGAAGGTATG+TGG | 0.584079 | 5_3:+53557615 | None:intergenic |
| ATAGTTCGAAACTGATTATG+TGG | 0.585231 | 5_3:-53557449 | Msa0818100:intron |
| GAGAGCTGACAGTGCCGCCA+CGG | 0.590175 | 5_3:+53560541 | None:intergenic |
| AGGAATGAAAGAACGAAGGT+TGG | 0.592895 | 5_3:+53560619 | None:intergenic |
| CTGACATAGTGAGCGTGACA+TGG | 0.596124 | 5_3:-53559468 | Msa0818100:CDS |
| GAGCGCATCAGAAATGAAGC+TGG | 0.599655 | 5_3:-53556523 | Msa0818100:CDS |
| GTCTCCTACTGATGATTCTG+GGG | 0.610889 | 5_3:-53556031 | Msa0818100:CDS |
| GATCAGGCGGCAATGACAGA+CGG | 0.616931 | 5_3:-53560594 | Msa0818100:exon |
| AAGAAGAAGCTCTTCTCAAG+GGG | 0.618644 | 5_3:+53557018 | None:intergenic |
| TCTGTTAGCGGGCGCAATTG+GGG | 0.620357 | 5_3:-53559112 | Msa0818100:CDS |
| TTGGTGTTCAGATCAAAGAT+GGG | 0.623826 | 5_3:-53559420 | Msa0818100:CDS |
| TCTTCATGAGTAATAAGAGT+GGG | 0.630332 | 5_3:+53556982 | None:intergenic |
| TGCCCAACCAACTACTGGTG+TGG | 0.630935 | 5_3:-53556593 | Msa0818100:CDS |
| GATTCTGATGCTAGCCAAAG+TGG | 0.631437 | 5_3:-53556003 | Msa0818100:CDS |
| CTCTTCATGAGTAATAAGAG+TGG | 0.634693 | 5_3:+53556981 | None:intergenic |
| ACATCCGTAAATGAAATCCC+AGG | 0.636983 | 5_3:+53555526 | None:intergenic |
| AGTATTACGTGGCTTGTCTG+GGG | 0.645525 | 5_3:-53557130 | Msa0818100:CDS |
| GATCCAAATGCACCCAAGAG+GGG | 0.645585 | 5_3:-53555740 | Msa0818100:CDS |
| ATAATGTCTGTGGCCGACGT+TGG | 0.646831 | 5_3:-53558113 | Msa0818100:CDS |
| TTGAGCGACATGCTGCTGGT+GGG | 0.652007 | 5_3:-53556839 | Msa0818100:CDS |
| TCATGAGTAATAAGAGTGGG+AGG | 0.653278 | 5_3:+53556985 | None:intergenic |
| GTTCCAAAGAGTAATCAACT+TGG | 0.653285 | 5_3:-53559439 | Msa0818100:CDS |
| TGACACAACTGGAGCCAATG+AGG | 0.660429 | 5_3:-53558482 | Msa0818100:intron |
| TCTGCCCCAGAATCATCAGT+AGG | 0.661015 | 5_3:+53556027 | None:intergenic |
| TTCACCTCCAACACCAACGT+CGG | 0.664425 | 5_3:+53558100 | None:intergenic |
| GATCGGGGTTGCAGAATCCG+GGG | 0.667231 | 5_3:-53559564 | Msa0818100:intron |
| AGGATCCAAATGCACCCAAG+AGG | 0.672756 | 5_3:-53555742 | Msa0818100:CDS |
| GTGTTCACCACAGTATTACG+TGG | 0.675365 | 5_3:-53557141 | Msa0818100:CDS |
| TTACCTGCATCACAATATGA+GGG | 0.680413 | 5_3:+53557556 | None:intergenic |
| GAGACAAGAGAAGAGTGTAG+CGG | 0.685253 | 5_3:-53560654 | None:intergenic |
| AAGAGAAGAGTGTAGCGGAG+CGG | 0.688381 | 5_3:-53560649 | None:intergenic |
| GTCGAGACTAATAACGACGA+AGG | 0.690699 | 5_3:+53557608 | None:intergenic |
| TGAGGAGAAGGAGCCATACG+AGG | 0.695374 | 5_3:-53555339 | Msa0818100:CDS |
| TGGTGAAGATGAAAGTGACG+AGG | 0.704697 | 5_3:-53556503 | Msa0818100:CDS |
| ATTCACTGGAATGTTCTCTG+GGG | 0.707209 | 5_3:-53555020 | Msa0818100:three_prime_UTR |
| AGACAAGCCACGTAATACTG+TGG | 0.714541 | 5_3:+53557134 | None:intergenic |
| TCGCAGGAATGAAAGAACGA+AGG | 0.717552 | 5_3:+53560615 | None:intergenic |
| ACAAACTCACCTGAGCAGGT+GGG | 0.719960 | 5_3:+53558225 | None:intergenic |
| TGTGATCTTGGAGTTCCATG+TGG | 0.743249 | 5_3:-53558506 | Msa0818100:CDS |
| TGAAGATGAAAGTGACGAGG+AGG | 0.754949 | 5_3:-53556500 | Msa0818100:intron |
| TTCAACAATATCACCCTCGG+CGG | 0.786590 | 5_3:-53560564 | Msa0818100:CDS |
| GTATTGCAATCCTTACACCG+AGG | 0.833639 | 5_3:-53558055 | Msa0818100:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATAAATTTTTAAAT+AGG | - | chr5_3:53555945-53555964 | Msa0818100:intron | 0.0% |
| !! | AACGAAAATAAAATAAATTA+GGG | + | chr5_3:53555163-53555182 | None:intergenic | 10.0% |
| !!! | ATTATAAATTTTTAAATAGG+TGG | - | chr5_3:53555948-53555967 | Msa0818100:intron | 10.0% |
| !! | AATTATATCAAATATAGATT+AGG | + | chr5_3:53559101-53559120 | None:intergenic | 10.0% |
| !!! | ATTAGGGTTATTTTTTAATT+AGG | + | chr5_3:53555147-53555166 | None:intergenic | 15.0% |
| !! | GAACGAAAATAAAATAAATT+AGG | + | chr5_3:53555164-53555183 | None:intergenic | 15.0% |
| !! | AATTTATAAATCATTGACAT+GGG | + | chr5_3:53555866-53555885 | None:intergenic | 15.0% |
| !! | AAATTTATAAATCATTGACA+TGG | + | chr5_3:53555867-53555886 | None:intergenic | 15.0% |
| !!! | TTGCTTTTGTATATATTAAT+CGG | - | chr5_3:53559468-53559487 | Msa0818100:CDS | 15.0% |
| !! | TTATGTTATATATATACCAA+TGG | - | chr5_3:53559903-53559922 | Msa0818100:intron | 15.0% |
| !! | AACGATAATGATGATAATTA+GGG | + | chr5_3:53555206-53555225 | None:intergenic | 20.0% |
| !! | TAACGATAATGATGATAATT+AGG | + | chr5_3:53555207-53555226 | None:intergenic | 20.0% |
| !! | TTCAAGTAAAAAACCTTTAA+TGG | + | chr5_3:53555595-53555614 | None:intergenic | 20.0% |
| !! | TAATTCATTTAAGTATCCAT+AGG | - | chr5_3:53555794-53555813 | Msa0818100:CDS | 20.0% |
| !! | TCACTGTTATTGTTTATAAA+AGG | - | chr5_3:53555887-53555906 | Msa0818100:intron | 20.0% |
| !! | CTACATCAAATATATGTAAT+TGG | + | chr5_3:53556237-53556256 | None:intergenic | 20.0% |
| !! | AGATATAGATATTAATGACT+GGG | - | chr5_3:53556319-53556338 | Msa0818100:intron | 20.0% |
| !! | GAAAATATCAACATAAGAAA+TGG | + | chr5_3:53556365-53556384 | None:intergenic | 20.0% |
| !!! | CTTTTATAAAGTTCTAATAC+TGG | - | chr5_3:53556921-53556940 | Msa0818100:intron | 20.0% |
| !! | GAAAAATATTATGCAAACTT+AGG | + | chr5_3:53557418-53557437 | None:intergenic | 20.0% |
| !! | TAGATCATAAAATAAACCTT+AGG | + | chr5_3:53557785-53557804 | None:intergenic | 20.0% |
| !! | AAATCAATAATCAACAGTTT+AGG | + | chr5_3:53558230-53558249 | None:intergenic | 20.0% |
| !! | TCATTTACAATTCAATAATC+AGG | - | chr5_3:53558395-53558414 | Msa0818100:intron | 20.0% |
| !! | CATTTACAATTCAATAATCA+GGG | - | chr5_3:53558396-53558415 | Msa0818100:intron | 20.0% |
| !! | ATTTACAATTCAATAATCAG+GGG | - | chr5_3:53558397-53558416 | Msa0818100:intron | 20.0% |
| !! | GACTATCATATATTAAATAC+TGG | - | chr5_3:53558638-53558657 | Msa0818100:intron | 20.0% |
| !! | TAATTTATATCCAACAACAT+TGG | - | chr5_3:53559201-53559220 | Msa0818100:intron | 20.0% |
| !! | ATAGATAATAAACAATAGTC+TGG | + | chr5_3:53559320-53559339 | None:intergenic | 20.0% |
| !! | AGTGAATTTAACAAGTTATT+AGG | + | chr5_3:53560540-53560559 | None:intergenic | 20.0% |
| !!! | TAATAACTTGTTAAATTCAC+TGG | - | chr5_3:53560539-53560558 | Msa0818100:intron | 20.0% |
| !! | TTGAGTAAATATTTAATTGG+TGG | + | chr5_3:53560643-53560662 | None:intergenic | 20.0% |
| !! | TGCTTGAGTAAATATTTAAT+TGG | + | chr5_3:53560646-53560665 | None:intergenic | 20.0% |
| !!! | TTGATTTTTAGTCACTACTA+TGG | - | chr5_3:53555272-53555291 | Msa0818100:CDS | 25.0% |
| ! | AAAAATAGCAGTGTAGAAAA+CGG | - | chr5_3:53555361-53555380 | Msa0818100:intron | 25.0% |
| !! | CAATAGATTCAAGTTCTATA+GGG | + | chr5_3:53555418-53555437 | None:intergenic | 25.0% |
| !! | TCAATAGATTCAAGTTCTAT+AGG | + | chr5_3:53555419-53555438 | None:intergenic | 25.0% |
| ! | AAACCAAACTAATTAACAGA+AGG | + | chr5_3:53555500-53555519 | None:intergenic | 25.0% |
| ! | GGTCCATAAAATTAATATTG+CGG | - | chr5_3:53555547-53555566 | Msa0818100:CDS | 25.0% |
| !! | ATGCCGCAATATTAATTTTA+TGG | + | chr5_3:53555553-53555572 | None:intergenic | 25.0% |
| ! | TTTAATTATGACTGTAGATG+AGG | - | chr5_3:53555624-53555643 | Msa0818100:intron | 25.0% |
| ! | TATAAAAGGACTATGATAAC+TGG | - | chr5_3:53555901-53555920 | Msa0818100:intron | 25.0% |
| ! | ATAAAAGGACTATGATAACT+GGG | - | chr5_3:53555902-53555921 | Msa0818100:intron | 25.0% |
| ! | GGCAGATAAAAATATATTCT+GGG | - | chr5_3:53556030-53556049 | Msa0818100:CDS | 25.0% |
| ! | GCAGATAAAAATATATTCTG+GGG | - | chr5_3:53556031-53556050 | Msa0818100:CDS | 25.0% |
| ! | CAGATAAAAATATATTCTGG+GGG | - | chr5_3:53556032-53556051 | Msa0818100:CDS | 25.0% |
| ! | ATATATGTAATTGGACATTC+AGG | + | chr5_3:53556228-53556247 | None:intergenic | 25.0% |
| ! | CATATATTTGATGTAGACTA+AGG | - | chr5_3:53556241-53556260 | Msa0818100:intron | 25.0% |
| ! | TCTGTCAAAATGTTAATCAA+AGG | + | chr5_3:53556302-53556321 | None:intergenic | 25.0% |
| ! | CAGATATAGATATTAATGAC+TGG | - | chr5_3:53556318-53556337 | Msa0818100:intron | 25.0% |
| !! | GTTGATATTTTCTATTTTGC+AGG | - | chr5_3:53556373-53556392 | Msa0818100:intron | 25.0% |
| ! | TATCCTTATATTTCCATTTC+AGG | - | chr5_3:53556954-53556973 | Msa0818100:intron | 25.0% |
| ! | TTTCCTGAAATGGAAATATA+AGG | + | chr5_3:53556960-53556979 | None:intergenic | 25.0% |
| ! | ATTCTATAGATATACCTCAT+TGG | + | chr5_3:53557108-53557127 | None:intergenic | 25.0% |
| ! | AAAATCTTCCTTATCCAAAT+TGG | - | chr5_3:53557178-53557197 | Msa0818100:intron | 25.0% |
| !! | TGCATAATATTTTTCGTATC+AGG | - | chr5_3:53557423-53557442 | Msa0818100:CDS | 25.0% |
| !!! | CCACAGACATTATTTTATTA+CGG | + | chr5_3:53557453-53557472 | None:intergenic | 25.0% |
| !! | GAGTATTTAAAATGTTACCT+CGG | + | chr5_3:53557538-53557557 | None:intergenic | 25.0% |
| !! | GAGGTAACATTTTAAATACT+CGG | - | chr5_3:53557537-53557556 | Msa0818100:intron | 25.0% |
| ! | TATTTGATCTTTCTCTTGAA+AGG | + | chr5_3:53557628-53557647 | None:intergenic | 25.0% |
| ! | GATTGATTGATGTGTAAATT+TGG | - | chr5_3:53558321-53558340 | Msa0818100:intron | 25.0% |
| ! | TGATAAAACCATACAAATTG+TGG | + | chr5_3:53558843-53558862 | None:intergenic | 25.0% |
| !!! | ACAATTTGTATGGTTTTATC+AGG | - | chr5_3:53558842-53558861 | Msa0818100:intron | 25.0% |
| ! | CGTTCTAATTTAAGTAAACA+AGG | - | chr5_3:53559171-53559190 | Msa0818100:CDS | 25.0% |
| !! | CAAATATTTTCCAATGTTGT+TGG | + | chr5_3:53559214-53559233 | None:intergenic | 25.0% |
| !! | CTTTTGTATATATTAATCGG+TGG | - | chr5_3:53559471-53559490 | Msa0818100:CDS | 25.0% |
| ! | GAAAAAACAGAAGAAGAAAA+AGG | - | chr5_3:53559811-53559830 | Msa0818100:intron | 25.0% |
| !! | ATTCATGTTCTTTTCTCAAA+TGG | - | chr5_3:53559865-53559884 | Msa0818100:intron | 25.0% |
| ! | AATATAAAGAAAGCTAATCC+TGG | - | chr5_3:53560029-53560048 | Msa0818100:intron | 25.0% |
| ! | ATATAAAGAAAGCTAATCCT+GGG | - | chr5_3:53560030-53560049 | Msa0818100:intron | 25.0% |
| ! | TTTCCTGAATCAATATTCAT+CGG | + | chr5_3:53560325-53560344 | None:intergenic | 25.0% |
| ! | ATGAAAGGCAAATAACATAT+AGG | - | chr5_3:53560429-53560448 | Msa0818100:intron | 25.0% |
| ! | TCTAAATTTCTAAATGACGA+TGG | - | chr5_3:53560469-53560488 | Msa0818100:intron | 25.0% |
| ! | TTTAATTGGTGGAAAATTGT+GGG | + | chr5_3:53560632-53560651 | None:intergenic | 25.0% |
| ! | ATTTAATTGGTGGAAAATTG+TGG | + | chr5_3:53560633-53560652 | None:intergenic | 25.0% |
| TGAAATCGAGAAAACGAAAA+CGG | + | chr5_3:53555099-53555118 | None:intergenic | 30.0% | |
| AGTCACTACTATGGAAAATT+AGG | - | chr5_3:53555281-53555300 | Msa0818100:CDS | 30.0% | |
| GTCACTACTATGGAAAATTA+GGG | - | chr5_3:53555282-53555301 | Msa0818100:CDS | 30.0% | |
| TGTTTCTCGTATCAAAACAA+TGG | - | chr5_3:53555316-53555335 | Msa0818100:CDS | 30.0% | |
| GTTTCTCGTATCAAAACAAT+GGG | - | chr5_3:53555317-53555336 | Msa0818100:CDS | 30.0% | |
| !! | ATTTTGATGCTTGATTGTGT+CGG | - | chr5_3:53555386-53555405 | Msa0818100:intron | 30.0% |
| TTAACCAACAAAAGACACAT+TGG | + | chr5_3:53555460-53555479 | None:intergenic | 30.0% | |
| !!! | TAATTAGTTTGGTTTTCGAG+TGG | - | chr5_3:53555505-53555524 | Msa0818100:CDS | 30.0% |
| AGACTGGAAGATAGAAAATT+TGG | + | chr5_3:53555720-53555739 | None:intergenic | 30.0% | |
| TCATTTAAGTATCCATAGGA+AGG | - | chr5_3:53555798-53555817 | Msa0818100:CDS | 30.0% | |
| TAAAAGGACTATGATAACTG+GGG | - | chr5_3:53555903-53555922 | Msa0818100:intron | 30.0% | |
| !! | GAATATATTTTTATCTGCCC+CGG | + | chr5_3:53556029-53556048 | None:intergenic | 30.0% |
| GGGCAGATAAAAATATATTC+TGG | - | chr5_3:53556029-53556048 | Msa0818100:CDS | 30.0% | |
| !! | TATATTCTGGGGGAATTTTA+TGG | - | chr5_3:53556042-53556061 | Msa0818100:CDS | 30.0% |
| GACTAAGGAATTCAAATATC+TGG | - | chr5_3:53556256-53556275 | Msa0818100:intron | 30.0% | |
| !!! | AAAGGTGTTTTGGAAAAAAC+TGG | + | chr5_3:53556414-53556433 | None:intergenic | 30.0% |
| !!! | AGTTTTTTCCAAAACACCTT+TGG | - | chr5_3:53556413-53556432 | Msa0818100:intron | 30.0% |
| ! | TATGCTGATATTTTCAGCAA+GGG | - | chr5_3:53556688-53556707 | Msa0818100:intron | 30.0% |
| AATCTTCAGGATAAGATGAA+TGG | + | chr5_3:53556751-53556770 | None:intergenic | 30.0% | |
| ! | TGAAGATTGTGGTTTTTCTT+GGG | - | chr5_3:53556763-53556782 | Msa0818100:CDS | 30.0% |
| ATTACTGTTCAAGTCCAATT+TGG | + | chr5_3:53557195-53557214 | None:intergenic | 30.0% | |
| !!! | ATTTGGGTGTGCATTTTTTA+TGG | - | chr5_3:53557229-53557248 | Msa0818100:intron | 30.0% |
| ! | ATTTTCATCACCAACAAACT+GGG | + | chr5_3:53557326-53557345 | None:intergenic | 30.0% |
| ! | AATTTTCATCACCAACAAAC+TGG | + | chr5_3:53557327-53557346 | None:intergenic | 30.0% |
| CCGTAATAAAATAATGTCTG+TGG | - | chr5_3:53557450-53557469 | Msa0818100:intron | 30.0% | |
| !!! | TCGACTATTTTTACTTCCTA+AGG | - | chr5_3:53557766-53557785 | Msa0818100:intron | 30.0% |
| TGCTTTCATTTCACTGATAT+TGG | - | chr5_3:53557806-53557825 | Msa0818100:intron | 30.0% | |
| ! | AAGTTTGTCCTTTTCGAATA+GGG | + | chr5_3:53557993-53558012 | None:intergenic | 30.0% |
| ! | AAAGTTTGTCCTTTTCGAAT+AGG | + | chr5_3:53557994-53558013 | None:intergenic | 30.0% |
| !! | GGTTTCTGGTTTACTAATTT+AGG | - | chr5_3:53558049-53558068 | Msa0818100:intron | 30.0% |
| ATAGTTCGAAACTGATTATG+TGG | - | chr5_3:53558124-53558143 | Msa0818100:CDS | 30.0% | |
| TTATGTGGTTGAAAGTGAAT+TGG | - | chr5_3:53558139-53558158 | Msa0818100:intron | 30.0% | |
| TTTGTTTATATACAACCCTG+AGG | - | chr5_3:53558247-53558266 | Msa0818100:CDS | 30.0% | |
| ATGTGTAAATTTGGTACTGT+GGG | - | chr5_3:53558330-53558349 | Msa0818100:intron | 30.0% | |
| TTACTAAGCCTGGAAAATTT+AGG | - | chr5_3:53558472-53558491 | Msa0818100:intron | 30.0% | |
| AAATTTAGGAGTTGTCAAGA+TGG | - | chr5_3:53558486-53558505 | Msa0818100:CDS | 30.0% | |
| TCTTCATGAGTAATAAGAGT+GGG | + | chr5_3:53558594-53558613 | None:intergenic | 30.0% | |
| AAACAATCAAAACCTCTAAC+AGG | + | chr5_3:53558682-53558701 | None:intergenic | 30.0% | |
| !! | CAGATTTTAGTCTGATAAGT+AGG | + | chr5_3:53558780-53558799 | None:intergenic | 30.0% |
| TTCTCTGAATATTACGAAAG+AGG | + | chr5_3:53558813-53558832 | None:intergenic | 30.0% | |
| ACTAGTTGCCAAGTAAAATT+TGG | + | chr5_3:53558885-53558904 | None:intergenic | 30.0% | |
| GGCTTGAAAATTATGCATTT+AGG | - | chr5_3:53558954-53558973 | Msa0818100:intron | 30.0% | |
| CTACTTACGAACAAAATATG+AGG | + | chr5_3:53559136-53559155 | None:intergenic | 30.0% | |
| CATTGGAAAATATTTGAGCA+TGG | - | chr5_3:53559218-53559237 | Msa0818100:intron | 30.0% | |
| ATATGCAATACAGAAAACAC+AGG | + | chr5_3:53559355-53559374 | None:intergenic | 30.0% | |
| ! | TTCCCTGTGGAAATATTTTT+CGG | - | chr5_3:53559436-53559455 | Msa0818100:CDS | 30.0% |
| TACCGAAAAATATTTCCACA+GGG | + | chr5_3:53559441-53559460 | None:intergenic | 30.0% | |
| TTATAGACAATCTTGCAGAA+GGG | + | chr5_3:53559966-53559985 | None:intergenic | 30.0% | |
| TAATCCTGGGATTTCATTTA+CGG | - | chr5_3:53560043-53560062 | Msa0818100:intron | 30.0% | |
| ! | ATAGGATTTTATCAGTGATC+GGG | + | chr5_3:53560171-53560190 | None:intergenic | 30.0% |
| ! | GATAGGATTTTATCAGTGAT+CGG | + | chr5_3:53560172-53560191 | None:intergenic | 30.0% |
| ACAACTTAGTAACACATGAT+AGG | + | chr5_3:53560189-53560208 | None:intergenic | 30.0% | |
| ! | TGTTGATAAAAAACGTTACG+AGG | - | chr5_3:53560267-53560286 | Msa0818100:intron | 30.0% |
| TCATGATAGCAACCATAAAA+CGG | + | chr5_3:53560413-53560432 | None:intergenic | 30.0% | |
| TTTATGGTTGCTATCATGAA+AGG | - | chr5_3:53560414-53560433 | Msa0818100:intron | 30.0% | |
| CTTCTCTTGTGATAAATTGA+CGG | - | chr5_3:53560492-53560511 | Msa0818100:intron | 30.0% | |
| ! | TGTTCCAATGTGTCTTTTGT+TGG | - | chr5_3:53555453-53555472 | Msa0818100:intron | 35.0% |
| GTGCCTTCTGTTAATTAGTT+TGG | - | chr5_3:53555494-53555513 | Msa0818100:CDS | 35.0% | |
| ! | GGATTTTCTATCAGTCAGTT+TGG | - | chr5_3:53555526-53555545 | Msa0818100:CDS | 35.0% |
| !!! | ACACATTTTGGGACCATTAA+AGG | - | chr5_3:53555579-53555598 | Msa0818100:intron | 35.0% |
| ! | TGAGGTAGATTCATTTTCTG+CGG | - | chr5_3:53555642-53555661 | Msa0818100:intron | 35.0% |
| AGCAATGCAACATTAAGCAA+AGG | + | chr5_3:53555840-53555859 | None:intergenic | 35.0% | |
| AAAAGGACTATGATAACTGG+GGG | - | chr5_3:53555904-53555923 | Msa0818100:intron | 35.0% | |
| TGATAACTGGGGGAAAAAAA+AGG | - | chr5_3:53555914-53555933 | Msa0818100:intron | 35.0% | |
| GATAACTGGGGGAAAAAAAA+GGG | - | chr5_3:53555915-53555934 | Msa0818100:intron | 35.0% | |
| TTGACACCTCTTCATATGAT+CGG | - | chr5_3:53555992-53556011 | Msa0818100:CDS | 35.0% | |
| ! | GGAATTTTATGGAAGAGACA+GGG | - | chr5_3:53556053-53556072 | Msa0818100:CDS | 35.0% |
| ! | GAATTTTATGGAAGAGACAG+GGG | - | chr5_3:53556054-53556073 | Msa0818100:CDS | 35.0% |
| ! | AATTTTATGGAAGAGACAGG+GGG | - | chr5_3:53556055-53556074 | Msa0818100:CDS | 35.0% |
| GTTCCAAAGAGTAATCAACT+TGG | - | chr5_3:53556134-53556153 | Msa0818100:intron | 35.0% | |
| !! | ACACCAAGTTGATTACTCTT+TGG | + | chr5_3:53556140-53556159 | None:intergenic | 35.0% |
| ! | TTGGTGTTCAGATCAAAGAT+GGG | - | chr5_3:53556153-53556172 | Msa0818100:intron | 35.0% |
| ATGTAATTGGACATTCAGGA+GGG | + | chr5_3:53556224-53556243 | None:intergenic | 35.0% | |
| TATGTAATTGGACATTCAGG+AGG | + | chr5_3:53556225-53556244 | None:intergenic | 35.0% | |
| TTAATGACTGGGACTTAGAT+TGG | - | chr5_3:53556330-53556349 | Msa0818100:intron | 35.0% | |
| ! | TGGGGAGAAGTTGATTTAAA+TGG | - | chr5_3:53556479-53556498 | Msa0818100:intron | 35.0% |
| ACGTAAACATCACAAGAACA+TGG | - | chr5_3:53556665-53556684 | Msa0818100:intron | 35.0% | |
| ! | GTATGCTGATATTTTCAGCA+AGG | - | chr5_3:53556687-53556706 | Msa0818100:intron | 35.0% |
| ! | ATGCTGATATTTTCAGCAAG+GGG | - | chr5_3:53556689-53556708 | Msa0818100:intron | 35.0% |
| TCATCTTATCCTGAAGATTG+TGG | - | chr5_3:53556752-53556771 | Msa0818100:CDS | 35.0% | |
| CAAGAAAAACCACAATCTTC+AGG | + | chr5_3:53556764-53556783 | None:intergenic | 35.0% | |
| ! | CTGAAGATTGTGGTTTTTCT+TGG | - | chr5_3:53556762-53556781 | Msa0818100:CDS | 35.0% |
| ! | GAAGATTGTGGTTTTTCTTG+GGG | - | chr5_3:53556764-53556783 | Msa0818100:CDS | 35.0% |
| AACAAACAAGAATGAGAGGA+AGG | + | chr5_3:53556830-53556849 | None:intergenic | 35.0% | |
| TTCCATTTCAGGAAATATGC+TGG | - | chr5_3:53556965-53556984 | Msa0818100:intron | 35.0% | |
| TCTCACAAACTAACCTTCAA+GGG | - | chr5_3:53557036-53557055 | Msa0818100:CDS | 35.0% | |
| !! | TCACATCATTTTTCCCTTGA+AGG | + | chr5_3:53557052-53557071 | None:intergenic | 35.0% |
| AGGGAAAAATGATGTGATCT+TGG | - | chr5_3:53557055-53557074 | Msa0818100:CDS | 35.0% | |
| GTTCAAGTCCAATTTGGATA+AGG | + | chr5_3:53557189-53557208 | None:intergenic | 35.0% | |
| ATTGGACTTGAACAGTAATG+TGG | - | chr5_3:53557196-53557215 | Msa0818100:intron | 35.0% | |
| TTGGACTTGAACAGTAATGT+GGG | - | chr5_3:53557197-53557216 | Msa0818100:intron | 35.0% | |
| ATCTCAGAAAGATTCGTTGA+TGG | - | chr5_3:53557270-53557289 | Msa0818100:intron | 35.0% | |
| GATGCTGTTGTTACATTTGA+TGG | - | chr5_3:53557496-53557515 | Msa0818100:intron | 35.0% | |
| ! | TAAAATGTTACCTCGGTGTA+AGG | + | chr5_3:53557531-53557550 | None:intergenic | 35.0% |
| ! | AGAAATTTGTGTTACTCTGC+AGG | - | chr5_3:53557657-53557676 | Msa0818100:intron | 35.0% |
| ! | GAAATTTGTGTTACTCTGCA+GGG | - | chr5_3:53557658-53557677 | Msa0818100:intron | 35.0% |
| ! | AAATTTGTGTTACTCTGCAG+GGG | - | chr5_3:53557659-53557678 | Msa0818100:intron | 35.0% |
| !! | AGAGAAGAGCATCAATCTTA+AGG | + | chr5_3:53557873-53557892 | None:intergenic | 35.0% |
| TTAAGATTGATGCTCTTCTC+TGG | - | chr5_3:53557872-53557891 | Msa0818100:CDS | 35.0% | |
| ! | AGTTTGTCCTTTTCGAATAG+GGG | + | chr5_3:53557992-53558011 | None:intergenic | 35.0% |
| TTACCTGCATCACAATATGA+GGG | + | chr5_3:53558020-53558039 | None:intergenic | 35.0% | |
| ATTACCTGCATCACAATATG+AGG | + | chr5_3:53558021-53558040 | None:intergenic | 35.0% | |
| TGATGCAGGTAATTTCTCAT+GGG | - | chr5_3:53558028-53558047 | Msa0818100:intron | 35.0% | |
| CTCTAAGTACAAAGACAGAT+TGG | - | chr5_3:53558184-53558203 | Msa0818100:intron | 35.0% | |
| GATGTGTAAATTTGGTACTG+TGG | - | chr5_3:53558329-53558348 | Msa0818100:intron | 35.0% | |
| ! | TTTTCCAGGCTTAGTAACTT+TGG | + | chr5_3:53558469-53558488 | None:intergenic | 35.0% |
| ! | TGACAACTCCTAAATTTTCC+AGG | + | chr5_3:53558483-53558502 | None:intergenic | 35.0% |
| AAAGAAGAAGCTCTTCTCAA+GGG | + | chr5_3:53558559-53558578 | None:intergenic | 35.0% | |
| CTCTTCATGAGTAATAAGAG+TGG | + | chr5_3:53558595-53558614 | None:intergenic | 35.0% | |
| CACTCTTATTACTCATGAAG+AGG | - | chr5_3:53558593-53558612 | Msa0818100:CDS | 35.0% | |
| TTCTGACTAGATTGACTATG+TGG | - | chr5_3:53558708-53558727 | Msa0818100:intron | 35.0% | |
| AACGAGTACCACAATTTGTA+TGG | - | chr5_3:53558832-53558851 | Msa0818100:intron | 35.0% | |
| CCAAGTAAAATTTGGCAATG+AGG | + | chr5_3:53558877-53558896 | None:intergenic | 35.0% | |
| ! | CCTCATTGCCAAATTTTACT+TGG | - | chr5_3:53558874-53558893 | Msa0818100:intron | 35.0% |
| ATAGTTGTGTGCATTTGTTC+TGG | - | chr5_3:53559379-53559398 | Msa0818100:intron | 35.0% | |
| ATGCACACTACTATGTCTTA+TGG | - | chr5_3:53559408-53559427 | Msa0818100:CDS | 35.0% | |
| CTACCGAAAAATATTTCCAC+AGG | + | chr5_3:53559442-53559461 | None:intergenic | 35.0% | |
| AATCGGTGGAAAATATCTAC+AGG | - | chr5_3:53559485-53559504 | Msa0818100:CDS | 35.0% | |
| ACCTCTACTCTTTACATCTT+TGG | - | chr5_3:53559650-53559669 | Msa0818100:intron | 35.0% | |
| ACCAAAGATGTAAAGAGTAG+AGG | + | chr5_3:53559654-53559673 | None:intergenic | 35.0% | |
| TATTCCTGACACCTTAATGA+TGG | - | chr5_3:53559673-53559692 | Msa0818100:intron | 35.0% | |
| CTGAAAATTGGCCATCATTA+AGG | + | chr5_3:53559687-53559706 | None:intergenic | 35.0% | |
| ! | TTTGGCAGGTTTCTGAAAAT+TGG | + | chr5_3:53559699-53559718 | None:intergenic | 35.0% |
| ! | TTTTCAGAAACCTGCCAAAA+AGG | - | chr5_3:53559700-53559719 | Msa0818100:intron | 35.0% |
| !! | ATCCTTCTTTGGTTCCTTTT+TGG | + | chr5_3:53559717-53559736 | None:intergenic | 35.0% |
| TTAGAAGACAGATCCTTCTT+TGG | + | chr5_3:53559728-53559747 | None:intergenic | 35.0% | |
| AAAGAAGGATCTGTCTTCTA+AGG | - | chr5_3:53559727-53559746 | Msa0818100:intron | 35.0% | |
| TCAAAAGATGCAGATGAAGA+TGG | - | chr5_3:53559782-53559801 | Msa0818100:intron | 35.0% | |
| ! | CTTTTCTCAAATGGAAAGAG+AGG | - | chr5_3:53559874-53559893 | Msa0818100:intron | 35.0% |
| GTTATAGACAATCTTGCAGA+AGG | + | chr5_3:53559967-53559986 | None:intergenic | 35.0% | |
| GCAAGATTGTCTATAACCAT+TGG | - | chr5_3:53559970-53559989 | Msa0818100:intron | 35.0% | |
| ! | AGCGTTTGAAATTTCTCCAA+TGG | + | chr5_3:53559989-53560008 | None:intergenic | 35.0% |
| CAAAATTACTTGGAGAGAAC+TGG | - | chr5_3:53560072-53560091 | Msa0818100:intron | 35.0% | |
| GAGAACTGGAAAAAAATGTC+AGG | - | chr5_3:53560086-53560105 | Msa0818100:intron | 35.0% | |
| CTGGAAAAAAATGTCAGGTA+TGG | - | chr5_3:53560091-53560110 | Msa0818100:intron | 35.0% | |
| GGAATGACATTATGCGAAAA+TGG | + | chr5_3:53560150-53560169 | None:intergenic | 35.0% | |
| ! | GAATCAATATTCATCGGTTG+TGG | + | chr5_3:53560319-53560338 | None:intergenic | 35.0% |
| !! | CAACCGATGAATATTGATTC+AGG | - | chr5_3:53560319-53560338 | Msa0818100:intron | 35.0% |
| AAATTCACTGGAATGTTCTC+TGG | - | chr5_3:53560551-53560570 | Msa0818100:CDS | 35.0% | |
| AATTCACTGGAATGTTCTCT+GGG | - | chr5_3:53560552-53560571 | Msa0818100:CDS | 35.0% | |
| ! | ATGAAAGAACGAAGGTTGGT+TGG | + | chr5_3:53554953-53554972 | None:intergenic | 40.0% |
| AGGAATGAAAGAACGAAGGT+TGG | + | chr5_3:53554957-53554976 | None:intergenic | 40.0% | |
| CTCTTCAACAATATCACCCT+CGG | - | chr5_3:53555006-53555025 | Msa0818100:three_prime_UTR | 40.0% | |
| CTATGGAAAATTAGGGCATG+TGG | - | chr5_3:53555289-53555308 | Msa0818100:CDS | 40.0% | |
| ! | GGCATTGTCTCACACATTTT+GGG | - | chr5_3:53555568-53555587 | Msa0818100:intron | 40.0% |
| ! | AGATTCATTTTCTGCGGATC+AGG | - | chr5_3:53555648-53555667 | Msa0818100:intron | 40.0% |
| ! | TTTTCTGCGGATCAGGTTTT+TGG | - | chr5_3:53555655-53555674 | Msa0818100:intron | 40.0% |
| ACGAAATCATTCAGCATGCT+TGG | + | chr5_3:53555756-53555775 | None:intergenic | 40.0% | |
| GCATGCTGAATGATTTCGTT+TGG | - | chr5_3:53555757-53555776 | Msa0818100:CDS | 40.0% | |
| TGACACCTCTTCATATGATC+GGG | - | chr5_3:53555993-53556012 | Msa0818100:CDS | 40.0% | |
| ! | GGGAATTTTATGGAAGAGAC+AGG | - | chr5_3:53556052-53556071 | Msa0818100:CDS | 40.0% |
| ! | ATTTTATGGAAGAGACAGGG+GGG | - | chr5_3:53556056-53556075 | Msa0818100:CDS | 40.0% |
| !! | CTTGGTGTTCAGATCAAAGA+TGG | - | chr5_3:53556152-53556171 | Msa0818100:intron | 40.0% |
| GGGTTGTTCTACAAATTCAC+TGG | - | chr5_3:53556173-53556192 | Msa0818100:intron | 40.0% | |
| ATTCACTGGATTTCGTGATC+AGG | - | chr5_3:53556187-53556206 | Msa0818100:intron | 40.0% | |
| TGTAATTGGACATTCAGGAG+GGG | + | chr5_3:53556223-53556242 | None:intergenic | 40.0% | |
| !!! | CAGCTATTCCAAAGGTGTTT+TGG | + | chr5_3:53556424-53556443 | None:intergenic | 40.0% |
| !! | CACCTTTGGAATAGCTGTAA+AGG | - | chr5_3:53556427-53556446 | Msa0818100:intron | 40.0% |
| CTCCTTTACAGCTATTCCAA+AGG | + | chr5_3:53556432-53556451 | None:intergenic | 40.0% | |
| GAGAAGCAACTTTCTGTTAG+CGG | - | chr5_3:53556449-53556468 | Msa0818100:intron | 40.0% | |
| AGAAGCAACTTTCTGTTAGC+GGG | - | chr5_3:53556450-53556469 | Msa0818100:intron | 40.0% | |
| ! | GAAAGATGCAAAGCATCAAG+AGG | + | chr5_3:53556553-53556572 | None:intergenic | 40.0% |
| ! | ATTGTGGTTTTTCTTGGGGT+TGG | - | chr5_3:53556768-53556787 | Msa0818100:CDS | 40.0% |
| ! | TTGTGGTTTTTCTTGGGGTT+GGG | - | chr5_3:53556769-53556788 | Msa0818100:CDS | 40.0% |
| TGGCAACAAACAAGAATGAG+AGG | + | chr5_3:53556834-53556853 | None:intergenic | 40.0% | |
| ATGAAGAGAAAGACAGCATG+TGG | + | chr5_3:53556865-53556884 | None:intergenic | 40.0% | |
| AGCCAGCATATTTCCTGAAA+TGG | + | chr5_3:53556970-53556989 | None:intergenic | 40.0% | |
| !! | AGGAAATATGCTGGCTTTCA+TGG | - | chr5_3:53556974-53556993 | Msa0818100:intron | 40.0% |
| !! | AATATGCTGGCTTTCATGGT+TGG | - | chr5_3:53556978-53556997 | Msa0818100:intron | 40.0% |
| GTCTCACAAACTAACCTTCA+AGG | - | chr5_3:53557035-53557054 | Msa0818100:CDS | 40.0% | |
| ! | AATGTGGGCTGTGGTTAATT+TGG | - | chr5_3:53557212-53557231 | Msa0818100:intron | 40.0% |
| ! | ATGTGGGCTGTGGTTAATTT+GGG | - | chr5_3:53557213-53557232 | Msa0818100:intron | 40.0% |
| !! | ACAAACTGGGTGTTGGAATT+CGG | + | chr5_3:53557313-53557332 | None:intergenic | 40.0% |
| AATTCCAACACCCAGTTTGT+TGG | - | chr5_3:53557313-53557332 | Msa0818100:intron | 40.0% | |
| AGTTACACCTGTCATTCTTG+CGG | - | chr5_3:53557696-53557715 | Msa0818100:intron | 40.0% | |
| CATCAATCTTAAGGCATGGT+TGG | + | chr5_3:53557864-53557883 | None:intergenic | 40.0% | |
| ! | AGAGCATCAATCTTAAGGCA+TGG | + | chr5_3:53557868-53557887 | None:intergenic | 40.0% |
| ! | CTAATAACGACGAAGGTATG+TGG | + | chr5_3:53557961-53557980 | None:intergenic | 40.0% |
| ! | TTTGTCCTTTTCGAATAGGG+GGG | + | chr5_3:53557990-53558009 | None:intergenic | 40.0% |
| ! | GTTTGTCCTTTTCGAATAGG+GGG | + | chr5_3:53557991-53558010 | None:intergenic | 40.0% |
| GTGATGCAGGTAATTTCTCA+TGG | - | chr5_3:53558027-53558046 | Msa0818100:intron | 40.0% | |
| GGTAATTTCTCATGGGTTTC+TGG | - | chr5_3:53558035-53558054 | Msa0818100:intron | 40.0% | |
| CAGATTGGAGTTGTCGTATA+AGG | - | chr5_3:53558199-53558218 | Msa0818100:intron | 40.0% | |
| ATACTGTGGTGAACACTTCA+TGG | + | chr5_3:53558428-53558447 | None:intergenic | 40.0% | |
| ! | TCATCTCTGAAAGCTGAAGA+TGG | - | chr5_3:53558522-53558541 | Msa0818100:CDS | 40.0% |
| AAGAAGAAGCTCTTCTCAAG+GGG | + | chr5_3:53558558-53558577 | None:intergenic | 40.0% | |
| GAAAGAAGAAGCTCTTCTCA+AGG | + | chr5_3:53558560-53558579 | None:intergenic | 40.0% | |
| GTAATAAGAGTGGGAGGTTT+AGG | + | chr5_3:53558585-53558604 | None:intergenic | 40.0% | |
| TCATGAGTAATAAGAGTGGG+AGG | + | chr5_3:53558591-53558610 | None:intergenic | 40.0% | |
| TGCATGATATCACCTGTTAG+AGG | - | chr5_3:53558667-53558686 | Msa0818100:intron | 40.0% | |
| !! | TATTACGAAAGAGGTGCTCT+TGG | + | chr5_3:53558804-53558823 | None:intergenic | 40.0% |
| TTGAACTGCATGTTCAGGTA+AGG | + | chr5_3:53558932-53558951 | None:intergenic | 40.0% | |
| TACCTGAACATGCAGTTCAA+AGG | - | chr5_3:53558932-53558951 | Msa0818100:intron | 40.0% | |
| ACCTGAACATGCAGTTCAAA+GGG | - | chr5_3:53558933-53558952 | Msa0818100:intron | 40.0% | |
| CATTTCTGTGTTGCATTCAC+AGG | - | chr5_3:53559274-53559293 | Msa0818100:intron | 40.0% | |
| GAAAACACAGGAAAGCGAAA+AGG | + | chr5_3:53559343-53559362 | None:intergenic | 40.0% | |
| ACACTACTATGTCTTATGGC+AGG | - | chr5_3:53559412-53559431 | Msa0818100:CDS | 40.0% | |
| CACTACTATGTCTTATGGCA+GGG | - | chr5_3:53559413-53559432 | Msa0818100:CDS | 40.0% | |
| ! | GAGGCATCACACGATAATAA+AGG | + | chr5_3:53559630-53559649 | None:intergenic | 40.0% |
| AGATGTAAAGAGTAGAGGTG+AGG | + | chr5_3:53559649-53559668 | None:intergenic | 40.0% | |
| !! | TTCTTTGGTTCCTTTTTGGC+AGG | + | chr5_3:53559713-53559732 | None:intergenic | 40.0% |
| TGCCAAAAAGGAACCAAAGA+AGG | - | chr5_3:53559712-53559731 | Msa0818100:intron | 40.0% | |
| ACATCCGTAAATGAAATCCC+AGG | + | chr5_3:53560050-53560069 | None:intergenic | 40.0% | |
| TGGGATTTCATTTACGGATG+TGG | - | chr5_3:53560049-53560068 | Msa0818100:intron | 40.0% | |
| ACGGATGTGGCAAAATTACT+TGG | - | chr5_3:53560062-53560081 | Msa0818100:intron | 40.0% | |
| AATGAATCTGACAGTGCCTA+AGG | - | chr5_3:53560343-53560362 | Msa0818100:intron | 40.0% | |
| CTCAATGTTAAAGCAGCCTT+AGG | + | chr5_3:53560362-53560381 | None:intergenic | 40.0% | |
| ! | TGACGGAAATTTTTGCTCCT+AGG | - | chr5_3:53560509-53560528 | Msa0818100:intron | 40.0% |
| ! | GACGGAAATTTTTGCTCCTA+GGG | - | chr5_3:53560510-53560529 | Msa0818100:intron | 40.0% |
| CAAGTTATTAGGTCATCCCT+AGG | + | chr5_3:53560529-53560548 | None:intergenic | 40.0% | |
| ATTCACTGGAATGTTCTCTG+GGG | - | chr5_3:53560553-53560572 | Msa0818100:CDS | 40.0% | |
| TCGCAGGAATGAAAGAACGA+AGG | + | chr5_3:53554961-53554980 | None:intergenic | 45.0% | |
| GTTCTTTCATTCCTGCGATC+AGG | - | chr5_3:53554963-53554982 | Msa0818100:three_prime_UTR | 45.0% | |
| TTCAACAATATCACCCTCGG+CGG | - | chr5_3:53555009-53555028 | Msa0818100:three_prime_UTR | 45.0% | |
| ! | CGGCATTGTCTCACACATTT+TGG | - | chr5_3:53555567-53555586 | Msa0818100:intron | 45.0% |
| TGGTTGAGTAGGGTTAAGAC+TGG | + | chr5_3:53555736-53555755 | None:intergenic | 45.0% | |
| TCAGCATGCTTGGTTGAGTA+GGG | + | chr5_3:53555746-53555765 | None:intergenic | 45.0% | |
| TTCAGCATGCTTGGTTGAGT+AGG | + | chr5_3:53555747-53555766 | None:intergenic | 45.0% | |
| GCATATTCGACTCCTTCCTA+TGG | + | chr5_3:53555813-53555832 | None:intergenic | 45.0% | |
| GACACCTCTTCATATGATCG+GGG | - | chr5_3:53555994-53556013 | Msa0818100:CDS | 45.0% | |
| ! | TGTGGTTTTTCTTGGGGTTG+GGG | - | chr5_3:53556770-53556789 | Msa0818100:CDS | 45.0% |
| !! | AAGGTCCTTTTTGAGAAGCC+AGG | + | chr5_3:53556811-53556830 | None:intergenic | 45.0% |
| ! | AGCAGAGAGAGCTTGTTTGA+TGG | - | chr5_3:53556885-53556904 | Msa0818100:intron | 45.0% |
| ! | AGCTTTCGAAGTGCCTTTAG+CGG | - | chr5_3:53557010-53557029 | Msa0818100:CDS | 45.0% |
| TGTGATCTTGGAGTTCCATG+TGG | - | chr5_3:53557067-53557086 | Msa0818100:CDS | 45.0% | |
| TTCCATGTGGATGACACAAC+TGG | - | chr5_3:53557080-53557099 | Msa0818100:CDS | 45.0% | |
| AGTTTGTAACAGCTTGCAGC+TGG | - | chr5_3:53557149-53557168 | Msa0818100:CDS | 45.0% | |
| ! | TTGAACAGTAATGTGGGCTG+TGG | - | chr5_3:53557203-53557222 | Msa0818100:intron | 45.0% |
| !! | GGGTGTTGGAATTCGGTATA+TGG | + | chr5_3:53557306-53557325 | None:intergenic | 45.0% |
| ATCACCAACAAACTGGGTGT+TGG | + | chr5_3:53557320-53557339 | None:intergenic | 45.0% | |
| GTATTGCAATCCTTACACCG+AGG | - | chr5_3:53557518-53557537 | Msa0818100:intron | 45.0% | |
| GTCGAACTACACTGCTATAC+TGG | + | chr5_3:53557751-53557770 | None:intergenic | 45.0% | |
| TGACAACTTCTCCTGTCAAC+TGG | - | chr5_3:53557910-53557929 | Msa0818100:intron | 45.0% | |
| GATACATACAGCCAGTTGAC+AGG | + | chr5_3:53557924-53557943 | None:intergenic | 45.0% | |
| GTCGAGACTAATAACGACGA+AGG | + | chr5_3:53557968-53557987 | None:intergenic | 45.0% | |
| GTACCCTCATATTGTGATGC+AGG | - | chr5_3:53558014-53558033 | Msa0818100:intron | 45.0% | |
| ! | ATTTTCCCAAGCATCCCTCA+AGG | + | chr5_3:53558280-53558299 | None:intergenic | 45.0% |
| GTGTTCACCACAGTATTACG+TGG | - | chr5_3:53558432-53558451 | Msa0818100:intron | 45.0% | |
| AGACAAGCCACGTAATACTG+TGG | + | chr5_3:53558442-53558461 | None:intergenic | 45.0% | |
| ! | ACAGTATTACGTGGCTTGTC+TGG | - | chr5_3:53558441-53558460 | Msa0818100:intron | 45.0% |
| ! | CAGTATTACGTGGCTTGTCT+GGG | - | chr5_3:53558442-53558461 | Msa0818100:intron | 45.0% |
| ! | AGTATTACGTGGCTTGTCTG+GGG | - | chr5_3:53558443-53558462 | Msa0818100:intron | 45.0% |
| TTTCTGATGCGCTCAAGATG+TGG | + | chr5_3:53559044-53559063 | None:intergenic | 45.0% | |
| TGGTGAAGATGAAAGTGACG+AGG | - | chr5_3:53559070-53559089 | Msa0818100:intron | 45.0% | |
| TGAAGATGAAAGTGACGAGG+AGG | - | chr5_3:53559073-53559092 | Msa0818100:intron | 45.0% | |
| TGAAGACTTCGTTGCCGAAA+AGG | - | chr5_3:53559509-53559528 | Msa0818100:CDS | 45.0% | |
| TTGCCGAAAAGGACGATGAA+GGG | - | chr5_3:53559520-53559539 | Msa0818100:CDS | 45.0% | |
| ! | AGACCCTTCATCGTCCTTTT+CGG | + | chr5_3:53559526-53559545 | None:intergenic | 45.0% |
| GGTCTCCTACTGATGATTCT+GGG | - | chr5_3:53559541-53559560 | Msa0818100:CDS | 45.0% | |
| GTCTCCTACTGATGATTCTG+GGG | - | chr5_3:53559542-53559561 | Msa0818100:CDS | 45.0% | |
| GATTCTGATGCTAGCCAAAG+TGG | - | chr5_3:53559570-53559589 | Msa0818100:intron | 45.0% | |
| CCTCTTTCTCATCACCACTT+TGG | + | chr5_3:53559587-53559606 | None:intergenic | 45.0% | |
| ! | CCAAAGTGGTGATGAGAAAG+AGG | - | chr5_3:53559584-53559603 | Msa0818100:intron | 45.0% |
| ! | TTGGCCATCATTAAGGTGTC+AGG | + | chr5_3:53559680-53559699 | None:intergenic | 45.0% |
| AATCCAGACATTCCCCTCTT+GGG | + | chr5_3:53559848-53559867 | None:intergenic | 45.0% | |
| !! | TCGTTTTGGATTTGGGTGTG+TGG | - | chr5_3:53559928-53559947 | Msa0818100:intron | 45.0% |
| GTGTGTTGAATGTACAGCTG+AGG | - | chr5_3:53560216-53560235 | Msa0818100:intron | 45.0% | |
| TGAATGTACAGCTGAGGAGA+AGG | - | chr5_3:53560222-53560241 | Msa0818100:intron | 45.0% | |
| !! | TCTCTGGGGTTGGTTATAGA+AGG | - | chr5_3:53560567-53560586 | Msa0818100:CDS | 45.0% |
| !! | GGGTTGGTTATAGAAGGATG+AGG | - | chr5_3:53560573-53560592 | Msa0818100:CDS | 45.0% |
| CTTTCATTCCTGCGATCAGG+CGG | - | chr5_3:53554966-53554985 | Msa0818100:three_prime_UTR | 50.0% | |
| GCAACCCCGATCATATGAAG+AGG | + | chr5_3:53556001-53556020 | None:intergenic | 50.0% | |
| ATGATCGGGGTTGCAGAATC+CGG | - | chr5_3:53556007-53556026 | Msa0818100:CDS | 50.0% | |
| CTGACATAGTGAGCGTGACA+TGG | - | chr5_3:53556105-53556124 | Msa0818100:intron | 50.0% | |
| AGTGAGCGTGACATGGATGA+AGG | - | chr5_3:53556112-53556131 | Msa0818100:intron | 50.0% | |
| ! | TTTCTGTTAGCGGGCGCAAT+TGG | - | chr5_3:53556459-53556478 | Msa0818100:intron | 50.0% |
| ! | TTCTGTTAGCGGGCGCAATT+GGG | - | chr5_3:53556460-53556479 | Msa0818100:intron | 50.0% |
| ! | TTTTCTTGGGGTTGGGGTAG+AGG | - | chr5_3:53556776-53556795 | Msa0818100:CDS | 50.0% |
| GTTCGCCTGGCTTCTCAAAA+AGG | - | chr5_3:53556803-53556822 | Msa0818100:CDS | 50.0% | |
| AGAGAAAGACAGCATGTGGC+TGG | + | chr5_3:53556861-53556880 | None:intergenic | 50.0% | |
| GTTTGTGAGACGTCCGCTAA+AGG | + | chr5_3:53557026-53557045 | None:intergenic | 50.0% | |
| CTCCAGTTGTGTCATCCACA+TGG | + | chr5_3:53557085-53557104 | None:intergenic | 50.0% | |
| TGACACAACTGGAGCCAATG+AGG | - | chr5_3:53557091-53557110 | Msa0818100:CDS | 50.0% | |
| TGAAAATTGCCCACCTGCTC+AGG | - | chr5_3:53557339-53557358 | Msa0818100:intron | 50.0% | |
| ACAAACTCACCTGAGCAGGT+GGG | + | chr5_3:53557351-53557370 | None:intergenic | 50.0% | |
| AACAAACTCACCTGAGCAGG+TGG | + | chr5_3:53557352-53557371 | None:intergenic | 50.0% | |
| GTGAACAAACTCACCTGAGC+AGG | + | chr5_3:53557355-53557374 | None:intergenic | 50.0% | |
| ! | CTCAGGTGAGTTTGTTCACG+AGG | - | chr5_3:53557356-53557375 | Msa0818100:intron | 50.0% |
| ATAATGTCTGTGGCCGACGT+TGG | - | chr5_3:53557460-53557479 | Msa0818100:intron | 50.0% | |
| TTCACCTCCAACACCAACGT+CGG | + | chr5_3:53557476-53557495 | None:intergenic | 50.0% | |
| CTTGAAGCCGCAAGAATGAC+AGG | + | chr5_3:53557706-53557725 | None:intergenic | 50.0% | |
| CTGTCATTCTTGCGGCTTCA+AGG | - | chr5_3:53557704-53557723 | Msa0818100:intron | 50.0% | |
| ATTCTTGCGGCTTCAAGGAC+AGG | - | chr5_3:53557709-53557728 | Msa0818100:intron | 50.0% | |
| CTGTTCCTTGAGGGATGCTT+GGG | - | chr5_3:53558272-53558291 | Msa0818100:CDS | 50.0% | |
| GAATTTGAGCGACATGCTGC+TGG | - | chr5_3:53558730-53558749 | Msa0818100:intron | 50.0% | |
| GCCCTTTGAACTGCATGTTC+AGG | + | chr5_3:53558937-53558956 | None:intergenic | 50.0% | |
| AGCCACACCAGTAGTTGGTT+GGG | + | chr5_3:53558985-53559004 | None:intergenic | 50.0% | |
| TAGCCACACCAGTAGTTGGT+TGG | + | chr5_3:53558986-53559005 | None:intergenic | 50.0% | |
| ACCAACTACTGGTGTGGCTA+AGG | - | chr5_3:53558986-53559005 | Msa0818100:intron | 50.0% | |
| ACCTTAGCCACACCAGTAGT+TGG | + | chr5_3:53558990-53559009 | None:intergenic | 50.0% | |
| TGGTGTGGCTAAGGTTCTTG+AGG | - | chr5_3:53558995-53559014 | Msa0818100:intron | 50.0% | |
| GGTGTGGCTAAGGTTCTTGA+GGG | - | chr5_3:53558996-53559015 | Msa0818100:intron | 50.0% | |
| GAGCGCATCAGAAATGAAGC+TGG | - | chr5_3:53559050-53559069 | Msa0818100:intron | 50.0% | |
| GTTGCCGAAAAGGACGATGA+AGG | - | chr5_3:53559519-53559538 | Msa0818100:CDS | 50.0% | |
| GGGTCTCCTACTGATGATTC+TGG | - | chr5_3:53559540-53559559 | Msa0818100:CDS | 50.0% | |
| TCTGCCCCAGAATCATCAGT+AGG | + | chr5_3:53559549-53559568 | None:intergenic | 50.0% | |
| AGGATCCAAATGCACCCAAG+AGG | - | chr5_3:53559831-53559850 | Msa0818100:intron | 50.0% | |
| GGATCCAAATGCACCCAAGA+GGG | - | chr5_3:53559832-53559851 | Msa0818100:intron | 50.0% | |
| GATCCAAATGCACCCAAGAG+GGG | - | chr5_3:53559833-53559852 | Msa0818100:intron | 50.0% | |
| ATTCCCCTCTTGGGTGCATT+TGG | + | chr5_3:53559839-53559858 | None:intergenic | 50.0% | |
| GAATCCAGACATTCCCCTCT+TGG | + | chr5_3:53559849-53559868 | None:intergenic | 50.0% | |
| ! | ACACGAGCTTTTGCCTCGTA+TGG | + | chr5_3:53560250-53560269 | None:intergenic | 50.0% |
| !! | TCTGTTCGTGCGCCGTTTTA+TGG | - | chr5_3:53560398-53560417 | Msa0818100:intron | 50.0% |
| !! | ACTGGAATGTTCTCTGGGGT+TGG | - | chr5_3:53560557-53560576 | Msa0818100:CDS | 50.0% |
| GATCAGGCGGCAATGACAGA+CGG | - | chr5_3:53554979-53554998 | Msa0818100:three_prime_UTR | 55.0% | |
| TGATCGGGGTTGCAGAATCC+GGG | - | chr5_3:53556008-53556027 | Msa0818100:CDS | 55.0% | |
| TTATGGAAGAGACAGGGGGG+TGG | - | chr5_3:53556059-53556078 | Msa0818100:CDS | 55.0% | |
| ! | TCTGTTAGCGGGCGCAATTG+GGG | - | chr5_3:53556461-53556480 | Msa0818100:intron | 55.0% |
| CTCGACCCCCCTATTCGAAA+AGG | - | chr5_3:53557982-53558001 | Msa0818100:intron | 55.0% | |
| CCTCAAGGAACAGCACCTCA+GGG | + | chr5_3:53558265-53558284 | None:intergenic | 55.0% | |
| !! | CCTGAGGTGCTGTTCCTTGA+GGG | - | chr5_3:53558263-53558282 | Msa0818100:CDS | 55.0% |
| GCTGTTCCTTGAGGGATGCT+TGG | - | chr5_3:53558271-53558290 | Msa0818100:CDS | 55.0% | |
| GGGGCCAAAGTTACTAAGCC+TGG | - | chr5_3:53558462-53558481 | Msa0818100:intron | 55.0% | |
| TTTGAGCGACATGCTGCTGG+TGG | - | chr5_3:53558733-53558752 | Msa0818100:intron | 55.0% | |
| TTGAGCGACATGCTGCTGGT+GGG | - | chr5_3:53558734-53558753 | Msa0818100:intron | 55.0% | |
| GGAGATGCCCAACCAACTAC+TGG | - | chr5_3:53558975-53558994 | Msa0818100:intron | 55.0% | |
| TGCCCAACCAACTACTGGTG+TGG | - | chr5_3:53558980-53558999 | Msa0818100:intron | 55.0% | |
| TCTTATGGCAGGGTTCCCTG+TGG | - | chr5_3:53559423-53559442 | Msa0818100:CDS | 55.0% | |
| TGAGGAGAAGGAGCCATACG+AGG | - | chr5_3:53560234-53560253 | Msa0818100:intron | 55.0% | |
| GCGCACGAACAGAAGCTAAC+TGG | + | chr5_3:53560391-53560410 | None:intergenic | 55.0% | |
| TGTCATTGCCGCCTGATCGC+AGG | + | chr5_3:53554977-53554996 | None:intergenic | 60.0% | |
| GATCGGGGTTGCAGAATCCG+GGG | - | chr5_3:53556009-53556028 | Msa0818100:CDS | 60.0% | |
| TCTTGGGGTTGGGGTAGAGG+TGG | - | chr5_3:53556779-53556798 | Msa0818100:CDS | 60.0% | |
| CTTGGGGTTGGGGTAGAGGT+GGG | - | chr5_3:53556780-53556799 | Msa0818100:CDS | 60.0% | |
| TTGGGGTTGGGGTAGAGGTG+GGG | - | chr5_3:53556781-53556800 | Msa0818100:CDS | 60.0% | |
| GACAGCATGTGGCTGGCAAG+TGG | + | chr5_3:53556854-53556873 | None:intergenic | 60.0% | |
| TCTGTGGCCGACGTTGGTGT+TGG | - | chr5_3:53557466-53557485 | Msa0818100:intron | 60.0% | |
| !! | CCCTGAGGTGCTGTTCCTTG+AGG | - | chr5_3:53558262-53558281 | Msa0818100:CDS | 60.0% |
| CCCTCAAGGAACAGCACCTC+AGG | + | chr5_3:53558266-53558285 | None:intergenic | 60.0% | |
| GCACCCAAGAGGGGAATGTC+TGG | - | chr5_3:53559842-53559861 | Msa0818100:intron | 60.0% | |
| AATATCACCCTCGGCGGCCG+TGG | - | chr5_3:53555015-53555034 | Msa0818100:three_prime_UTR | 65.0% | |
| GAGAGCTGACAGTGCCGCCA+CGG | + | chr5_3:53555035-53555054 | None:intergenic | 65.0% | |
| !! | GTGGCCGACGTTGGTGTTGG+AGG | - | chr5_3:53557469-53557488 | Msa0818100:intron | 65.0% |
| GGGTAGAGGTGGGGTTCGCC+TGG | - | chr5_3:53556790-53556809 | Msa0818100:CDS | 70.0% | |
| ATCACCCTCGGCGGCCGTGG+CGG | - | chr5_3:53555018-53555037 | Msa0818100:three_prime_UTR | 75.0% | |
| ! | AGTGCCGCCACGGCCGCCGA+GGG | + | chr5_3:53555025-53555044 | None:intergenic | 80.0% |
| ! | CAGTGCCGCCACGGCCGCCG+AGG | + | chr5_3:53555026-53555045 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 53554928 | 53560667 | 53554928 | ID=Msa0818100;Name=Msa0818100 |
| chr5_3 | mRNA | 53554928 | 53560667 | 53554928 | ID=Msa0818100-mRNA-1;Parent=Msa0818100;Name=Msa0818100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=63|1|1|1|1|1|16|304|646 |
| chr5_3 | exon | 53554928 | 53555362 | 53554928 | ID=Msa0818100-mRNA-1:exon:16154;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53555488 | 53555566 | 53555488 | ID=Msa0818100-mRNA-1:exon:16153;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53555700 | 53555888 | 53555700 | ID=Msa0818100-mRNA-1:exon:16152;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53555990 | 53556088 | 53555990 | ID=Msa0818100-mRNA-1:exon:16151;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53556501 | 53556648 | 53556501 | ID=Msa0818100-mRNA-1:exon:16150;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53556732 | 53556877 | 53556732 | ID=Msa0818100-mRNA-1:exon:16149;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53556981 | 53557178 | 53556981 | ID=Msa0818100-mRNA-1:exon:16148;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53557375 | 53557467 | 53557375 | ID=Msa0818100-mRNA-1:exon:16147;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53557560 | 53557646 | 53557560 | ID=Msa0818100-mRNA-1:exon:16146;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53557808 | 53557916 | 53557808 | ID=Msa0818100-mRNA-1:exon:16145;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53558056 | 53558150 | 53558056 | ID=Msa0818100-mRNA-1:exon:16144;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53558235 | 53558318 | 53558235 | ID=Msa0818100-mRNA-1:exon:16143;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53558483 | 53558619 | 53558483 | ID=Msa0818100-mRNA-1:exon:16142;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53559095 | 53559200 | 53559095 | ID=Msa0818100-mRNA-1:exon:16141;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53559387 | 53559572 | 53559387 | ID=Msa0818100-mRNA-1:exon:16140;Parent=Msa0818100-mRNA-1 |
| chr5_3 | exon | 53560551 | 53560667 | 53560551 | ID=Msa0818100-mRNA-1:exon:16139;Parent=Msa0818100-mRNA-1 |
| chr5_3 | five_prime_UTR | 53560605 | 53560667 | 53560605 | ID=Msa0818100-mRNA-1:five_prime_utr;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53560551 | 53560604 | 53560551 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53559387 | 53559572 | 53559387 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53559095 | 53559200 | 53559095 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53558483 | 53558619 | 53558483 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53558235 | 53558318 | 53558235 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53558056 | 53558150 | 53558056 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53557808 | 53557916 | 53557808 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53557560 | 53557646 | 53557560 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53557375 | 53557467 | 53557375 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53556981 | 53557178 | 53556981 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53556732 | 53556877 | 53556732 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53556501 | 53556648 | 53556501 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53555990 | 53556088 | 53555990 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53555700 | 53555888 | 53555700 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53555488 | 53555566 | 53555488 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | CDS | 53555232 | 53555362 | 53555232 | ID=Msa0818100-mRNA-1:cds;Parent=Msa0818100-mRNA-1 |
| chr5_3 | three_prime_UTR | 53554928 | 53555231 | 53554928 | ID=Msa0818100-mRNA-1:three_prime_utr;Parent=Msa0818100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
