AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820500 MtrunA17_Chr5g0440451 89.944 537 13 2 231 737 410 935 0.0 965
Msa0820500 MtrunA17_Chr5g0440451 96.121 232 4 1 1 232 1 227 2.00e-149 459
Msa0820500 MtrunA17_Chr3g0118611 59.369 507 165 5 231 736 307 773 0.0 560
Msa0820500 MtrunA17_Chr3g0118611 56.044 91 39 1 143 232 34 124 5.16e-23 104
Msa0820500 MtrunA17_Chr5g0448511 51.636 275 124 3 228 493 193 467 2.62e-87 285
Msa0820500 MtrunA17_Chr5g0448761 50.000 262 126 3 231 487 429 690 1.10e-76 263
Msa0820500 MtrunA17_Chr5g0448761 34.028 144 78 3 47 173 59 202 1.08e-17 87.8
Msa0820500 MtrunA17_Chr2g0329031 35.849 265 161 5 236 497 372 630 1.51e-41 162
Msa0820500 MtrunA17_Chr3g0080351 34.553 246 155 3 237 480 434 675 1.03e-39 157
Msa0820500 MtrunA17_Chr1g0202341 33.208 265 164 3 231 486 413 673 2.53e-39 155
Msa0820500 MtrunA17_Chr1g0202341 28.324 173 103 5 18 170 16 187 7.47e-11 65.5
Msa0820500 MtrunA17_Chr1g0207551 35.662 272 158 8 230 496 391 650 3.43e-39 155
Msa0820500 MtrunA17_Chr2g0287061 39.370 254 149 4 231 482 507 757 2.43e-38 152
Msa0820500 MtrunA17_Chr2g0287061 37.778 90 56 0 47 136 28 117 2.89e-12 70.5
Msa0820500 MtrunA17_Chr2g0287061 34.783 92 60 0 47 138 182 273 5.83e-11 66.2
Msa0820500 MtrunA17_Chr6g0477261 37.395 238 137 6 231 458 243 478 7.30e-36 144
Msa0820500 MtrunA17_Chr2g0291581 33.591 259 162 4 234 482 421 679 4.82e-35 142
Msa0820500 MtrunA17_Chr2g0296781 37.815 238 136 6 231 458 354 589 6.33e-35 142
Msa0820500 MtrunA17_Chr5g0441581 33.333 252 150 7 230 470 381 625 5.18e-29 123
Msa0820500 MtrunA17_Chr1g0196541 34.722 216 133 3 231 438 354 569 1.17e-28 122
Msa0820500 MtrunA17_Chr8g0363841 33.168 202 131 3 231 428 379 580 1.95e-26 115
Msa0820500 MtrunA17_Chr2g0287651 27.966 236 156 4 231 454 435 668 3.99e-23 105
Msa0820500 MtrunA17_Chr6g0458391 32.683 205 128 5 226 425 566 765 1.15e-22 103
Msa0820500 MtrunA17_Chr1g0203721 26.449 276 189 5 231 496 428 699 5.19e-22 101
Msa0820500 MtrunA17_Chr1g0198761 30.952 210 135 3 240 443 429 634 6.21e-21 98.2
Msa0820500 MtrunA17_Chr3g0082121 29.961 257 166 7 236 485 403 652 1.63e-20 96.7
Msa0820500 MtrunA17_Chr2g0290391 31.381 239 146 7 240 475 436 659 6.13e-19 91.7
Msa0820500 MtrunA17_Chr2g0324011 24.625 333 224 8 111 436 267 579 8.05e-19 90.9
Msa0820500 MtrunA17_Chr2g0276841 33.333 186 117 3 237 420 444 624 8.52e-19 91.3
Msa0820500 MtrunA17_Chr2g0329361 36.066 122 63 1 47 153 60 181 4.38e-18 84.7
Msa0820500 MtrunA17_Chr7g0233911 34.109 129 66 3 27 136 8 136 7.46e-17 80.1
Msa0820500 MtrunA17_Chr2g0291591 37.692 130 76 2 231 355 421 550 4.88e-16 82.0
Msa0820500 MtrunA17_Chr3g0078041 40.566 106 49 1 47 138 49 154 6.10e-16 77.8
Msa0820500 MtrunA17_Chr1g0203051 26.848 257 161 8 182 412 366 621 7.56e-16 81.6
Msa0820500 MtrunA17_Chr2g0294841 28.646 192 131 2 231 420 416 603 1.69e-15 80.9
Msa0820500 MtrunA17_Chr4g0033611 39.216 102 50 2 47 136 75 176 2.61e-15 76.6
Msa0820500 MtrunA17_Chr2g0308841 25.773 194 141 2 231 421 30 223 6.75e-15 75.5
Msa0820500 MtrunA17_Chr2g0329421 37.255 102 52 2 47 136 26 127 8.79e-14 71.2
Msa0820500 MtrunA17_Chr6g0476441 37.931 87 53 1 373 458 8 94 1.58e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820500 AT2G27110.3 51.056 521 203 10 218 736 235 705 3.50e-163 488
Msa0820500 AT2G27110.2 51.056 521 203 10 218 736 380 850 2.09e-161 488
Msa0820500 AT2G27110.2 37.190 242 116 7 1 239 1 209 2.85e-31 131
Msa0820500 AT2G27110.1 51.056 521 203 10 218 736 380 850 2.09e-161 488
Msa0820500 AT2G27110.1 37.190 242 116 7 1 239 1 209 2.85e-31 131
Msa0820500 AT4G38170.1 47.082 257 134 1 228 482 200 456 4.79e-75 253
Msa0820500 AT4G38180.1 45.221 272 144 3 231 497 438 709 1.45e-74 257
Msa0820500 AT4G38180.1 32.934 167 94 2 24 173 49 214 1.25e-20 97.8
Msa0820500 AT4G15090.1 36.131 274 165 5 231 500 414 681 6.14e-45 173
Msa0820500 AT4G15090.5 36.131 274 165 5 231 500 414 681 6.14e-45 173
Msa0820500 AT4G15090.3 36.131 274 165 5 231 500 414 681 6.14e-45 173
Msa0820500 AT4G15090.2 36.131 274 165 5 231 500 414 681 6.14e-45 173
Msa0820500 AT4G15090.4 36.131 274 165 5 231 500 414 681 6.14e-45 173
Msa0820500 AT5G18960.2 39.919 248 145 3 236 482 540 784 4.50e-44 170
Msa0820500 AT5G18960.2 39.604 101 61 0 47 147 42 142 2.16e-17 87.4
Msa0820500 AT5G18960.2 33.628 113 71 1 24 136 191 299 1.66e-12 71.6
Msa0820500 AT5G18960.1 39.919 248 145 3 236 482 540 784 4.50e-44 170
Msa0820500 AT5G18960.1 39.604 101 61 0 47 147 42 142 2.16e-17 87.4
Msa0820500 AT5G18960.1 33.628 113 71 1 24 136 191 299 1.66e-12 71.6
Msa0820500 AT3G06250.2 39.919 248 145 3 236 482 516 760 5.58e-44 170
Msa0820500 AT3G06250.2 39.560 91 55 0 47 137 27 117 9.45e-16 82.0
Msa0820500 AT3G06250.2 35.417 96 62 0 41 136 183 278 2.20e-12 71.2
Msa0820500 AT3G06250.1 39.919 248 145 3 236 482 516 760 5.58e-44 170
Msa0820500 AT3G06250.1 39.560 91 55 0 47 137 27 117 9.45e-16 82.0
Msa0820500 AT3G06250.1 35.417 96 62 0 41 136 183 278 2.20e-12 71.2
Msa0820500 AT3G06250.3 39.919 248 145 3 236 482 516 760 5.58e-44 170
Msa0820500 AT3G06250.3 39.560 91 55 0 47 137 27 117 9.45e-16 82.0
Msa0820500 AT3G06250.3 35.417 96 62 0 41 136 183 278 2.20e-12 71.2
Msa0820500 AT3G22170.2 33.466 251 160 3 227 475 419 664 3.92e-41 162
Msa0820500 AT3G22170.1 33.466 251 160 3 227 475 419 664 3.92e-41 162
Msa0820500 AT1G76320.2 35.938 256 156 4 236 489 356 605 4.59e-41 161
Msa0820500 AT1G76320.1 35.938 256 156 4 236 489 356 605 4.65e-41 161
Msa0820500 AT1G76320.4 35.938 256 156 4 236 489 356 605 4.65e-41 161
Msa0820500 AT1G76320.3 35.938 256 156 4 236 489 356 605 5.76e-41 160
Msa0820500 AT4G19990.1 36.905 252 148 6 236 481 310 556 1.42e-35 144
Msa0820500 AT4G19990.6 36.905 252 148 6 236 481 367 613 1.58e-35 144
Msa0820500 AT4G19990.2 36.905 252 148 6 236 481 367 613 1.58e-35 144
Msa0820500 AT4G19990.3 36.905 252 148 6 236 481 367 613 1.91e-35 144
Msa0820500 AT4G19990.4 36.905 252 148 6 236 481 367 613 1.91e-35 144
Msa0820500 AT4G19990.5 36.905 252 148 6 236 481 367 613 2.36e-35 144
Msa0820500 AT4G19990.7 36.905 252 148 6 236 481 381 627 2.76e-35 143
Msa0820500 AT1G52520.1 33.977 259 161 4 234 482 437 695 4.77e-33 136
Msa0820500 AT2G32250.2 31.452 248 161 4 231 476 358 598 2.68e-32 134
Msa0820500 AT2G32250.4 31.452 248 161 4 231 476 358 598 2.68e-32 134
Msa0820500 AT2G32250.8 31.452 248 161 4 231 476 317 557 3.12e-32 134
Msa0820500 AT2G32250.6 31.452 248 161 4 231 476 358 598 3.13e-32 134
Msa0820500 AT2G32250.1 31.452 248 161 4 231 476 358 598 3.13e-32 134
Msa0820500 AT2G32250.3 31.452 248 161 4 231 476 358 598 3.13e-32 134
Msa0820500 AT2G32250.5 31.452 248 161 4 231 476 358 598 3.27e-32 134
Msa0820500 AT2G32250.7 31.452 248 161 4 231 476 317 557 3.52e-32 134
Msa0820500 AT1G80010.1 29.845 258 170 6 237 485 465 720 4.50e-27 117
Msa0820500 AT5G28530.5 34.574 188 109 5 240 424 377 553 9.43e-20 94.4
Msa0820500 AT5G28530.4 34.211 190 111 5 240 424 377 557 1.51e-19 94.0
Msa0820500 AT5G28530.3 34.574 188 109 5 240 424 440 616 1.54e-19 94.0
Msa0820500 AT5G28530.2 34.574 188 109 5 240 424 440 616 1.54e-19 94.0
Msa0820500 AT5G28530.1 34.211 190 111 5 240 424 440 620 2.93e-19 93.2
Msa0820500 AT1G10240.2 31.183 186 121 3 237 420 422 602 5.19e-18 89.0
Msa0820500 AT1G10240.1 31.183 186 121 3 237 420 422 602 5.19e-18 89.0
Msa0820500 AT4G12850.4 33.594 128 73 2 39 154 2 129 9.26e-18 80.9
Msa0820500 AT3G59470.3 34.899 149 75 4 8 144 39 177 1.84e-17 83.2
Msa0820500 AT3G59470.1 34.899 149 75 4 8 144 39 177 1.84e-17 83.2
Msa0820500 AT3G59470.2 34.899 149 75 4 8 144 51 189 2.60e-17 83.2
Msa0820500 AT4G12850.1 35.185 108 60 1 39 136 2 109 2.10e-16 78.6
Msa0820500 AT4G12850.2 35.185 108 60 1 39 136 2 109 3.16e-16 76.6
Msa0820500 AT2G43280.1 36.607 112 57 1 41 138 15 126 4.32e-16 78.2
Msa0820500 AT3G07500.1 38.835 103 50 2 47 136 32 134 9.66e-16 77.4

Find 202 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATAATGCCCGGGTTTC+TGG 0.076489 5_3:-57867172 Msa0820500:CDS
CCCAGTCCTTTGTAAGTTTC+AGG 0.139099 5_3:+57871125 None:intergenic
ATGGGTTGCCTCACATTATA+AGG 0.229489 5_3:+57870969 None:intergenic
GATGGGGTGAATAGCATATT+TGG 0.271792 5_3:-57869991 Msa0820500:CDS
ACTCATTGTAATTGATTGTT+TGG 0.290282 5_3:+57866322 None:intergenic
ACTTTCAACAACAGCAAATA+AGG 0.298234 5_3:-57868395 Msa0820500:CDS
CAACATTACCAATGTTCTTT+AGG 0.301189 5_3:-57870212 Msa0820500:CDS
CATAATGTGGATGCTGAATT+TGG 0.311841 5_3:-57871551 Msa0820500:CDS
TCAATTACAATGAGTAGAAA+TGG 0.315457 5_3:-57866314 Msa0820500:three_prime_UTR
TTAACCTCATATTCTGTTGA+TGG 0.333158 5_3:+57868481 None:intergenic
AGAGTCACTATATCCAAGTT+TGG 0.365829 5_3:-57866232 Msa0820500:three_prime_UTR
GTGTCTCGTCAGCGAGTTGA+TGG 0.365862 5_3:-57869280 Msa0820500:CDS
TTGTTTGATAGGAAAGGATT+TGG 0.371906 5_3:-57866366 Msa0820500:three_prime_UTR
CAACTTGCTTACGTGCCATT+GGG 0.373390 5_3:+57869383 None:intergenic
GAGGGATGCTCGGGACCTGC+TGG 0.384203 5_3:-57870928 Msa0820500:CDS
CGTGCCATTGGGGTCGTTTG+TGG 0.386781 5_3:+57869394 None:intergenic
GGCGAAGGTGTCTTTAGAAC+TGG 0.389519 5_3:+57870117 None:intergenic
TCAACTCGCTGACGAGGCAC+TGG 0.390203 5_3:+57869349 None:intergenic
CAACTCGCTGACGAGGCATT+GGG 0.391167 5_3:+57869317 None:intergenic
AGATCAGCCATTGGTTGAAC+AGG 0.395974 5_3:+57869424 None:intergenic
ACCTTCGCCAATGGAGAATC+AGG 0.397585 5_3:-57870103 Msa0820500:CDS
CACGGTCAGTTTAATGCTGA+TGG 0.401096 5_3:-57871362 Msa0820500:CDS
TCATGCTGAGGGTATGGTTT+CGG 0.402062 5_3:-57871498 Msa0820500:CDS
AGCAAAAGGGTCAAAATAAG+TGG 0.402254 5_3:-57871253 Msa0820500:CDS
CAGCATATCTGATGGCTTCC+CGG 0.407610 5_3:+57869695 None:intergenic
CATCTCGCTGACGAGGCATT+GGG 0.408269 5_3:+57869218 None:intergenic
CTGACAATAGTCAAAAGATT+AGG 0.415523 5_3:-57871049 Msa0820500:CDS
TGTATAGTGCTCGTGATCAA+TGG 0.420791 5_3:-57870329 Msa0820500:CDS
ATCCTCTTCGATTCTGTTGG+CGG 0.420813 5_3:+57870011 None:intergenic
AAGTTAAGTTTCAAGTATCC+AGG 0.425548 5_3:-57867141 Msa0820500:CDS
TCATCTTGCTGAAGAGGCGC+TGG 0.427906 5_3:+57869184 None:intergenic
GACATTAGGGAGGGATGCTC+GGG 0.428100 5_3:-57870937 Msa0820500:CDS
TGAAGTAGGGGTTCTCTTGT+CGG 0.428439 5_3:+57869528 None:intergenic
TCAACTTGCTTACGTGCCAT+TGG 0.429644 5_3:+57869382 None:intergenic
TCATCTCGCTGACGAGGCAT+TGG 0.429820 5_3:+57869217 None:intergenic
TATGCTAAATAAATTTAAAC+AGG 0.430381 5_3:-57866117 None:intergenic
ATGAACTCAGAGGGCATGAT+TGG 0.432731 5_3:-57870362 Msa0820500:intron
TGCCTGAAAACTCAAACATT+TGG 0.440083 5_3:+57869890 None:intergenic
ATGAACTAGCTCTGGAGAAA+TGG 0.440287 5_3:-57870185 Msa0820500:CDS
CTGATGGGACAAATATGTTC+CGG 0.441063 5_3:-57871346 Msa0820500:CDS
AAAGTTGCGAGGCGATGATT+AGG 0.441916 5_3:-57871280 Msa0820500:CDS
TCCGGGAGTTTGTGTGTAGC+AGG 0.444056 5_3:-57871328 Msa0820500:CDS
AGGTTAAGTTCCATCTCTCT+CGG 0.446028 5_3:-57868465 Msa0820500:CDS
GATGATTAGGATAGAGCAAA+AGG 0.447571 5_3:-57871267 Msa0820500:CDS
CACGGTATGCCAATCTGTGC+CGG 0.447645 5_3:-57869714 Msa0820500:CDS
AGGCAGAAGACTTGTTTGAT+AGG 0.447995 5_3:-57866377 Msa0820500:three_prime_UTR
TCAACTCGCTGACGAGGCAT+TGG 0.448513 5_3:+57869316 None:intergenic
TGATGGGACAAATATGTTCC+GGG 0.449990 5_3:-57871345 Msa0820500:CDS
ACGGTAGTTGTCACCAAACT+TGG 0.450400 5_3:+57866219 None:intergenic
TCAAGTATCCAGGGATGCAT+TGG 0.450589 5_3:-57867131 Msa0820500:CDS
CATCTTGCTGAAGAGGCGCT+GGG 0.450975 5_3:+57869185 None:intergenic
TCAAAGTTTCATTTAATAGC+CGG 0.454883 5_3:-57866549 Msa0820500:three_prime_UTR
TGAAGTCTATGACTGAAGTC+GGG 0.455020 5_3:-57868423 Msa0820500:CDS
TTCTCTGGCGGTACCTGATA+AGG 0.456816 5_3:-57871198 Msa0820500:CDS
CCCATCCTCTTCGATTCTGT+TGG 0.457757 5_3:+57870008 None:intergenic
CGCTGACGAGGCACTGGGGA+TGG 0.458341 5_3:+57869355 None:intergenic
TGTCTCAGCTTGATAATGCC+CGG 0.459217 5_3:-57867180 Msa0820500:intron
CGCCTACGAGGCACTGGTCG+TGG 0.461327 5_3:+57869256 None:intergenic
GCAGGGAAGGTTTGAAAAGA+AGG 0.461483 5_3:-57871310 Msa0820500:CDS
CACAGCACCCAATGCATCCC+TGG 0.463515 5_3:+57867123 None:intergenic
TCAACTCGCTGACGAGACAC+TGG 0.466795 5_3:+57869283 None:intergenic
GTGCCTCGTAGGCGAGTTGA+TGG 0.469828 5_3:-57869247 Msa0820500:CDS
GAAGTAGGGGTTCTCTTGTC+GGG 0.472681 5_3:+57869529 None:intergenic
TCAAATACCATGCCCAAATA+CGG 0.473294 5_3:+57871458 None:intergenic
GGACTGGGGCTTGTTCCAAC+TGG 0.474446 5_3:-57871110 Msa0820500:CDS
GCCTGAAACTTACAAAGGAC+TGG 0.476526 5_3:-57871126 Msa0820500:CDS
AATTGATTGTTTGGAGCTGC+AGG 0.477791 5_3:+57866331 None:intergenic
GGGATCTCATGCTGAGGGTA+TGG 0.478915 5_3:-57871504 Msa0820500:CDS
GTCGATGTTTCATCGTTAAG+TGG 0.478980 5_3:+57869472 None:intergenic
GTATAGTGCTCGTGATCAAT+GGG 0.479907 5_3:-57870328 Msa0820500:CDS
CTTGTATCTGATGTTGAAGT+AGG 0.481986 5_3:+57869514 None:intergenic
CAACTAATCATCGACTCAGC+TGG 0.482359 5_3:-57869567 Msa0820500:CDS
CAAGTATCCAGGGATGCATT+GGG 0.482761 5_3:-57867130 Msa0820500:CDS
AGTGAGTATGCTAGACGGTC+GGG 0.482860 5_3:-57871407 Msa0820500:CDS
TTTGGTCAAGTTAATGATGC+TGG 0.483303 5_3:-57871533 Msa0820500:CDS
CAATTACAATGAGTAGAAAT+GGG 0.483874 5_3:-57866313 Msa0820500:three_prime_UTR
CGCTGACGAGGCATTGGGGA+TGG 0.486572 5_3:+57869223 None:intergenic
ATGGGTTTAAGAACTTGTCC+AGG 0.488776 5_3:-57866295 Msa0820500:three_prime_UTR
ATGATTAGTTGATGACACTT+TGG 0.490968 5_3:+57869579 None:intergenic
GAAGACTTGTTTGATAGGAA+AGG 0.492059 5_3:-57866372 Msa0820500:three_prime_UTR
ACACTAGAAAAGTGCTTCAC+TGG 0.492664 5_3:+57871161 None:intergenic
TCAGTCATAGACTTCAAAAC+AGG 0.492669 5_3:+57868430 None:intergenic
TTGAAGTCTATGACTGAAGT+CGG 0.493526 5_3:-57868424 Msa0820500:CDS
AGACATTAGGGAGGGATGCT+CGG 0.493941 5_3:-57870938 Msa0820500:CDS
TTGTATCTGATGTTGAAGTA+GGG 0.495979 5_3:+57869515 None:intergenic
TCTGGAGAAATGGTTTGAAA+AGG 0.496885 5_3:-57870175 Msa0820500:CDS
ACTTATGATGCTGCAATGAC+TGG 0.497681 5_3:-57869649 Msa0820500:CDS
CGCTGACGAGGCATTGGGGA+TGG 0.497742 5_3:+57869322 None:intergenic
TCCTTTGTAAGTTTCAGGCA+TGG 0.500821 5_3:+57871130 None:intergenic
AGCTCAAAAGCTGGTTTGCA+CGG 0.501825 5_3:-57871380 Msa0820500:CDS
GAGTCCATCAACAGAATATG+AGG 0.503904 5_3:-57868485 Msa0820500:CDS
GATGGCTTCCCGGCACAGAT+TGG 0.505149 5_3:+57869705 None:intergenic
AATGAATCACGGAAATATGC+TGG 0.507187 5_3:+57870303 None:intergenic
CAAAGTTTCATTTAATAGCC+GGG 0.507394 5_3:-57866548 Msa0820500:three_prime_UTR
CGCTGACGAGACACTGGGGA+TGG 0.508209 5_3:+57869289 None:intergenic
GAAGGAACATAGCCATTCTC+TGG 0.512692 5_3:-57871213 Msa0820500:CDS
GTTAATGATGCTGGAAACTC+GGG 0.514570 5_3:-57871524 Msa0820500:CDS
AGTTAATGATGCTGGAAACT+CGG 0.515040 5_3:-57871525 Msa0820500:CDS
ATGCCTCGTCAGCGAGATGA+TGG 0.517544 5_3:-57869214 Msa0820500:CDS
TTCGGAGCCGTATTTGGGCA+TGG 0.517562 5_3:-57871465 Msa0820500:CDS
TGTTTGGAGCTGCAGGGTAG+AGG 0.518228 5_3:+57866338 None:intergenic
CTTCAGACTCGCCAGAAACC+CGG 0.518277 5_3:+57867161 None:intergenic
TAGGCAGTATGAACTAGCTC+TGG 0.519286 5_3:-57870193 Msa0820500:CDS
CGTTAAGTGGCCATAAAAGA+GGG 0.519299 5_3:+57869485 None:intergenic
GATATATACATGACACCAGT+TGG 0.519725 5_3:+57871095 None:intergenic
GGGTGCTGTGCTACGATCAA+TGG 0.520286 5_3:-57867110 Msa0820500:CDS
CATCCCACTACATCTTAAAA+CGG 0.520600 5_3:-57869813 Msa0820500:CDS
CCTGAAACTTACAAAGGACT+GGG 0.522711 5_3:-57871125 Msa0820500:CDS
CAACTCGCTGACGAGGCACT+GGG 0.522831 5_3:+57869350 None:intergenic
TCGGGTTTCAGCTCAAAAGC+TGG 0.523459 5_3:-57871389 Msa0820500:CDS
AGGGGTTCTCTTGTCGGGAT+CGG 0.524735 5_3:+57869534 None:intergenic
GATGTTCATGTGATAACTAT+CGG 0.525824 5_3:-57871596 Msa0820500:CDS
TTAGCAACCTGATTCTCCAT+TGG 0.527218 5_3:+57870096 None:intergenic
TATCAGGTACCGCCAGAGAA+TGG 0.527369 5_3:+57871201 None:intergenic
GCGCCTCTTCAGCAAGATGA+TGG 0.535172 5_3:-57869181 Msa0820500:CDS
ATAACTATCGGAGAAGGAAG+TGG 0.536867 5_3:-57871584 Msa0820500:CDS
GTGAGTAATTAGTATTCATA+CGG 0.537548 5_3:+57866200 None:intergenic
GAGTTTGTGTGTAGCAGGGA+AGG 0.537943 5_3:-57871323 Msa0820500:CDS
TCGTTAAGTGGCCATAAAAG+AGG 0.538091 5_3:+57869484 None:intergenic
TCTTGCTGAAGAGGCGCTGG+GGG 0.539141 5_3:+57869187 None:intergenic
CCATCTCTCTCGGGTTACTG+TGG 0.539645 5_3:-57868455 Msa0820500:CDS
GGTTAAGTTCCATCTCTCTC+GGG 0.539950 5_3:-57868464 Msa0820500:CDS
TCAACTCGCCTACGAGGCAC+TGG 0.539984 5_3:+57869250 None:intergenic
AGTTAGCTCTCAATTCAGAC+TGG 0.540099 5_3:+57869920 None:intergenic
CCCTGCTACACACAAACTCC+CGG 0.542869 5_3:+57871327 None:intergenic
CATCTCTCTCGGGTTACTGT+GGG 0.544255 5_3:-57868454 Msa0820500:CDS
GGTAAATTCAGATCAGCCAT+TGG 0.544409 5_3:+57869415 None:intergenic
GTCTCAGCTTGATAATGCCC+GGG 0.544869 5_3:-57867179 Msa0820500:intron
CGATGCTCCTGTTCAACCAA+TGG 0.548780 5_3:-57869431 Msa0820500:CDS
TAGTGAGTATGCTAGACGGT+CGG 0.552667 5_3:-57871408 Msa0820500:CDS
CTTTCATAAAATACTCCAGC+AGG 0.556028 5_3:+57870913 None:intergenic
GGACCATCATCTTGCTGAAG+AGG 0.556157 5_3:+57869178 None:intergenic
ACGGTATGCCAATCTGTGCC+GGG 0.557330 5_3:-57869713 Msa0820500:CDS
CAACTCGCTGACGAGACACT+GGG 0.557677 5_3:+57869284 None:intergenic
TTCAGACTCGCCAGAAACCC+GGG 0.560618 5_3:+57867162 None:intergenic
CAACAGAATCGAAGAGGATG+GGG 0.561342 5_3:-57870007 Msa0820500:CDS
ATCTTGCTGAAGAGGCGCTG+GGG 0.561388 5_3:+57869186 None:intergenic
CCAACAGAATCGAAGAGGAT+GGG 0.561771 5_3:-57870008 Msa0820500:CDS
TCTAAAGACACCTTCGCCAA+TGG 0.564758 5_3:-57870112 Msa0820500:CDS
CATCTTAAAACGGTGGACAA+TGG 0.573595 5_3:-57869803 Msa0820500:CDS
CGGAGAAGGAAGTGGATCGA+TGG 0.574177 5_3:-57871576 Msa0820500:CDS
CCGGGAGTTTGTGTGTAGCA+GGG 0.574471 5_3:-57871327 Msa0820500:CDS
ACCTGATTCTCCATTGGCGA+AGG 0.577117 5_3:+57870102 None:intergenic
GGTTGTTACAAAATTTGTGA+AGG 0.577403 5_3:-57871231 Msa0820500:CDS
TGAGGAAGGTGCTGTAGCTA+TGG 0.578207 5_3:-57869674 Msa0820500:CDS
GCCAACAGAATCGAAGAGGA+TGG 0.578654 5_3:-57870009 Msa0820500:CDS
GCTGTAATATCTCCTACTCA+AGG 0.581429 5_3:-57870276 Msa0820500:CDS
CCACAGTAACCCGAGAGAGA+TGG 0.582321 5_3:+57868455 None:intergenic
GAGGCTTCAAATCCTTGAGT+AGG 0.582780 5_3:+57870264 None:intergenic
ACGGTCAGTTTAATGCTGAT+GGG 0.585310 5_3:-57871361 Msa0820500:CDS
TGTTTAAATTTATTTAGCAT+AGG 0.585498 5_3:+57866119 None:intergenic
ATGACTGGTCTTAGAGAAGG+TGG 0.586437 5_3:-57869634 Msa0820500:CDS
TGTATCTGATGTTGAAGTAG+GGG 0.588892 5_3:+57869516 None:intergenic
GGTTGCTGTAATAAATCTCA+AGG 0.589532 5_3:-57868374 Msa0820500:intron
TCGTACATGTATCATATCGT+AGG 0.593956 5_3:-57866397 Msa0820500:three_prime_UTR
ACCTTCCTCAGCATATCTGA+TGG 0.598127 5_3:+57869687 None:intergenic
AACTCGGGATCTCATGCTGA+GGG 0.600343 5_3:-57871509 Msa0820500:CDS
CATATGAGTCTTTGACATCA+CGG 0.600661 5_3:-57869732 Msa0820500:CDS
AGTTAAGTTTCAAGTATCCA+GGG 0.603293 5_3:-57867140 Msa0820500:CDS
TTGATCACGAGCACTATACA+AGG 0.604276 5_3:+57870332 None:intergenic
GCCATCAGATATGCTGAGGA+AGG 0.604325 5_3:-57869688 Msa0820500:CDS
TGGATCGATGGAACATAATG+TGG 0.607966 5_3:-57871564 Msa0820500:CDS
GCAAAAGGGTCAAAATAAGT+GGG 0.609981 5_3:-57871252 Msa0820500:CDS
GGACTCTCAACTCGCTGACG+AGG 0.611590 5_3:+57869343 None:intergenic
AACTTGCTTACGTGCCATTG+GGG 0.617053 5_3:+57869384 None:intergenic
CATGTGATAACTATCGGAGA+AGG 0.618752 5_3:-57871590 Msa0820500:CDS
TCATACTGCCTAAAGAACAT+TGG 0.619859 5_3:+57870204 None:intergenic
GAAGTCTATGACTGAAGTCG+GGG 0.631820 5_3:-57868422 Msa0820500:CDS
GGACCATCATCTCGCTGACG+AGG 0.632084 5_3:+57869211 None:intergenic
ATGATTAGGATAGAGCAAAA+GGG 0.632703 5_3:-57871266 Msa0820500:CDS
GGACTATCAACTCGCTGACG+AGG 0.634516 5_3:+57869310 None:intergenic
TACCGCCAACAGAATCGAAG+AGG 0.639324 5_3:-57870013 Msa0820500:CDS
CACATTATAAGGCATCGAAG+TGG 0.639643 5_3:+57870980 None:intergenic
TCTGGCGGTACCTGATAAGG+TGG 0.640782 5_3:-57871195 Msa0820500:CDS
TACATACTCACATAACCACC+CGG 0.643454 5_3:+57866530 None:intergenic
ATCTCGCTGACGAGGCATTG+GGG 0.645015 5_3:+57869219 None:intergenic
TGATGGTCCACCTGAAAACA+CGG 0.645985 5_3:-57869164 Msa0820500:intron
TTTACCACAAACGACCCCAA+TGG 0.646852 5_3:-57869398 Msa0820500:CDS
TGGGTTTAAGAACTTGTCCA+GGG 0.647146 5_3:-57866294 Msa0820500:three_prime_UTR
ACATTGGTAATGTTGTATGC+CGG 0.647842 5_3:+57870220 None:intergenic
GCAATGACTGGTCTTAGAGA+AGG 0.648703 5_3:-57869637 Msa0820500:CDS
AGTATTGTATTGGATGAATG+TGG 0.649103 5_3:-57869769 Msa0820500:CDS
GTCCACGACCAGTGCCTCGT+AGG 0.650635 5_3:-57869258 Msa0820500:CDS
CTTCGATGCCTTATAATGTG+AGG 0.651484 5_3:-57870977 Msa0820500:CDS
TTTATAGTGAGTATGCTAGA+CGG 0.652904 5_3:-57871412 Msa0820500:CDS
AACTCGCTGACGAGGCATTG+GGG 0.657743 5_3:+57869318 None:intergenic
GGAAGCCATCAGATATGCTG+AGG 0.662402 5_3:-57869692 Msa0820500:CDS
AAACTCGGGATCTCATGCTG+AGG 0.664329 5_3:-57871510 Msa0820500:CDS
ACCATGCCTGAAACTTACAA+AGG 0.669726 5_3:-57871131 Msa0820500:CDS
CCCACTACATCTTAAAACGG+TGG 0.672135 5_3:-57869810 Msa0820500:CDS
GGAACATAGCCATTCTCTGG+CGG 0.681713 5_3:-57871210 Msa0820500:CDS
AAGGATGACTGAAAGTTGCG+AGG 0.682372 5_3:-57871291 Msa0820500:CDS
ATTGATTGTTTGGAGCTGCA+GGG 0.684593 5_3:+57866332 None:intergenic
GGACCATCAACTCGCCTACG+AGG 0.699625 5_3:+57869244 None:intergenic
AACTCGCTGACGAGACACTG+GGG 0.704142 5_3:+57869285 None:intergenic
CAGCACAAGAAAGTTGCTCG+CGG 0.708596 5_3:+57867080 None:intergenic
AACTCGCTGACGAGGCACTG+GGG 0.710997 5_3:+57869351 None:intergenic
GTTAAGTGGCCATAAAAGAG+GGG 0.718319 5_3:+57869486 None:intergenic
AGTTTCATTTAATAGCCGGG+TGG 0.723218 5_3:-57866545 Msa0820500:three_prime_UTR
ATTGTATTGGATGAATGTGG+TGG 0.728769 5_3:-57869766 Msa0820500:CDS
CTGAAACTTACAAAGGACTG+GGG 0.731403 5_3:-57871124 Msa0820500:CDS
TATAGTGAATACATTAGACA+CGG 0.741062 5_3:+57869837 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATTTAAAATCAGTTT+TGG - chr5_3:57869048-57869067 Msa0820500:intron 10.0%
!!! AAAGAATTAACATTTTAATT+TGG - chr5_3:57869852-57869871 Msa0820500:CDS 10.0%
!! AATGTTATGTATTCAAATTT+GGG + chr5_3:57868861-57868880 None:intergenic 15.0%
!! TAATGTTATGTATTCAAATT+TGG + chr5_3:57868862-57868881 None:intergenic 15.0%
!! TATATTTAAAAGAAAGAATC+TGG - chr5_3:57869528-57869547 Msa0820500:CDS 15.0%
!! TAAGATGAATATATTTATAC+CGG - chr5_3:57869650-57869669 Msa0820500:CDS 15.0%
!!! TACTTTTATAAGCAATTATT+AGG + chr5_3:57869987-57870006 None:intergenic 15.0%
!! TATTTATCTATCATTTAATG+TGG - chr5_3:57870180-57870199 Msa0820500:CDS 15.0%
!! ATTTATCTATCATTTAATGT+GGG - chr5_3:57870181-57870200 Msa0820500:CDS 15.0%
!!! TGGTATTGTTATTATTATTA+TGG - chr5_3:57870414-57870433 Msa0820500:intron 15.0%
!!! GGTATTGTTATTATTATTAT+GGG - chr5_3:57870415-57870434 Msa0820500:intron 15.0%
!!! TGCTTTTTTATATATGTTCT+TGG - chr5_3:57868604-57868623 Msa0820500:intron 20.0%
!!! GCTTTTTTATATATGTTCTT+GGG - chr5_3:57868605-57868624 Msa0820500:intron 20.0%
!! ATGTTATGTATTCAAATTTG+GGG + chr5_3:57868860-57868879 None:intergenic 20.0%
!! AAAGTTAAAATTATCTACCT+CGG + chr5_3:57869557-57869576 None:intergenic 20.0%
!! ATTCTATTTGCAACAAAATA+TGG + chr5_3:57869881-57869900 None:intergenic 20.0%
!! ATAACCAAACAAAAGAAAAT+GGG + chr5_3:57870043-57870062 None:intergenic 20.0%
!! TTTATCTATCATTTAATGTG+GGG - chr5_3:57870182-57870201 Msa0820500:CDS 20.0%
!!! TCTATTTGGTTATTTTATCA+AGG - chr5_3:57870206-57870225 Msa0820500:CDS 20.0%
!! TATTCTTTACTACTTCTATT+TGG + chr5_3:57870372-57870391 None:intergenic 20.0%
!! TAGAAGTAGTAAAGAATAAA+AGG - chr5_3:57870374-57870393 Msa0820500:intron 20.0%
!! AGGAAATGTAAAGAAAATAA+TGG - chr5_3:57870394-57870413 Msa0820500:intron 20.0%
!! TATTATTATGGGAGAAATAA+TGG - chr5_3:57870426-57870445 Msa0820500:intron 20.0%
!!! TTAAACTAAGTTGAATTGTA+GGG + chr5_3:57871026-57871045 None:intergenic 20.0%
!!! ATTAAACTAAGTTGAATTGT+AGG + chr5_3:57871027-57871046 None:intergenic 20.0%
!! CCTAATGTCTTCTTTTTAAT+GGG + chr5_3:57866771-57866790 None:intergenic 25.0%
! CCATTAAAAAGAAGACATTA+GGG - chr5_3:57866769-57866788 Msa0820500:intron 25.0%
! TAGAGTTCATAGTGAAAATA+AGG + chr5_3:57867269-57867288 None:intergenic 25.0%
! TATAGTGAATACATTAGACA+CGG + chr5_3:57867885-57867904 None:intergenic 25.0%
! AGCAAAAAACAGTATTGTAT+TGG - chr5_3:57867940-57867959 Msa0820500:intron 25.0%
! TTTATATATGTTCTTGGGAT+TGG - chr5_3:57868610-57868629 Msa0820500:intron 25.0%
! AAGTACACTAACACTAAAAA+AGG + chr5_3:57869122-57869141 None:intergenic 25.0%
!!! ATTTTAACAAAGTAACAGTG+AGG - chr5_3:57869162-57869181 Msa0820500:intron 25.0%
! AACAGAACATAACTAATCTA+TGG - chr5_3:57869597-57869616 Msa0820500:CDS 25.0%
! TTCAACACATTATTAATAGC+CGG + chr5_3:57869672-57869691 None:intergenic 25.0%
! CTTATATTATAAGTTCAGGT+TGG + chr5_3:57869780-57869799 None:intergenic 25.0%
! GTTGCTTATATTATAAGTTC+AGG + chr5_3:57869784-57869803 None:intergenic 25.0%
! ATAATATAAGCAACACACAA+AGG - chr5_3:57869790-57869809 Msa0820500:CDS 25.0%
! TGTTGCAAATAGAATATTTG+TGG - chr5_3:57869886-57869905 Msa0820500:CDS 25.0%
! CATAACCAAACAAAAGAAAA+TGG + chr5_3:57870044-57870063 None:intergenic 25.0%
!!! CATTTTCTTTTGTTTGGTTA+TGG - chr5_3:57870042-57870061 Msa0820500:CDS 25.0%
! ACTTGAGATAAAATTGAATG+TGG + chr5_3:57870107-57870126 None:intergenic 25.0%
!!! TTCAATTTTATCTCAAGTTG+AGG - chr5_3:57870109-57870128 Msa0820500:CDS 25.0%
! TTATCTATCATTTAATGTGG+GGG - chr5_3:57870183-57870202 Msa0820500:CDS 25.0%
!!! AGTTTTGTCTGTTGTTTATA+TGG + chr5_3:57870330-57870349 None:intergenic 25.0%
! GATACACATATTTAGGTAAT+AGG + chr5_3:57870672-57870691 None:intergenic 25.0%
! ATTAATATACACAGAGAATG+AGG + chr5_3:57871074-57871093 None:intergenic 25.0%
! TCAAAGTTTCATTTAATAGC+CGG - chr5_3:57871170-57871189 Msa0820500:CDS 25.0%
!! ACAAATTTTTGTAGAGAAAG+AGG + chr5_3:57871290-57871309 None:intergenic 25.0%
! ACTCATTGTAATTGATTGTT+TGG + chr5_3:57871400-57871419 None:intergenic 25.0%
! TCAATTACAATGAGTAGAAA+TGG - chr5_3:57871405-57871424 Msa0820500:CDS 25.0%
! CAATTACAATGAGTAGAAAT+GGG - chr5_3:57871406-57871425 Msa0820500:CDS 25.0%
! GTGAGTAATTAGTATTCATA+CGG + chr5_3:57871522-57871541 None:intergenic 25.0%
! TACTAATTACTCACAAAAAG+TGG - chr5_3:57871528-57871547 Msa0820500:CDS 25.0%
! ACTAATTACTCACAAAAAGT+GGG - chr5_3:57871529-57871548 Msa0820500:CDS 25.0%
GATGTTCATGTGATAACTAT+CGG - chr5_3:57866123-57866142 Msa0820500:three_prime_UTR 30.0%
TTTATAGTGAGTATGCTAGA+CGG - chr5_3:57866307-57866326 Msa0820500:three_prime_UTR 30.0%
ATGATTAGGATAGAGCAAAA+GGG - chr5_3:57866453-57866472 Msa0820500:three_prime_UTR 30.0%
GGTTGTTACAAAATTTGTGA+AGG - chr5_3:57866488-57866507 Msa0820500:three_prime_UTR 30.0%
!! AATCTTTTGACTATTGTCAG+AGG + chr5_3:57866670-57866689 None:intergenic 30.0%
CTGACAATAGTCAAAAGATT+AGG - chr5_3:57866670-57866689 Msa0820500:intron 30.0%
! ATCGAAGTGGAATTTTTAAC+TGG + chr5_3:57866729-57866748 None:intergenic 30.0%
CCCATTAAAAAGAAGACATT+AGG - chr5_3:57866768-57866787 Msa0820500:intron 30.0%
! CCCTAATGTCTTCTTTTTAA+TGG + chr5_3:57866772-57866791 None:intergenic 30.0%
TTAAAAAGAAGACATTAGGG+AGG - chr5_3:57866772-57866791 Msa0820500:intron 30.0%
TAAAAAGAAGACATTAGGGA+GGG - chr5_3:57866773-57866792 Msa0820500:intron 30.0%
ACAAAATCATTTGACCATGA+TGG + chr5_3:57867019-57867038 None:intergenic 30.0%
! CATGGTCAAATGATTTTGTT+TGG - chr5_3:57867020-57867039 Msa0820500:intron 30.0%
! ACTCATATTTGATGATTCTG+AGG - chr5_3:57867049-57867068 Msa0820500:intron 30.0%
!! TTGAGGAGTTTGATTTTTCT+TGG - chr5_3:57867315-57867334 Msa0820500:intron 30.0%
ATAGACAAATATGAACTCAG+AGG - chr5_3:57867347-57867366 Msa0820500:intron 30.0%
TAGACAAATATGAACTCAGA+GGG - chr5_3:57867348-57867367 Msa0820500:intron 30.0%
TTACAGCGAAAAATGAATCA+CGG + chr5_3:57867430-57867449 None:intergenic 30.0%
CAACATTACCAATGTTCTTT+AGG - chr5_3:57867507-57867526 Msa0820500:intron 30.0%
AGTATTGTATTGGATGAATG+TGG - chr5_3:57867950-57867969 Msa0820500:intron 30.0%
!! ATGATTAGTTGATGACACTT+TGG + chr5_3:57868143-57868162 None:intergenic 30.0%
TTGTATCTGATGTTGAAGTA+GGG + chr5_3:57868207-57868226 None:intergenic 30.0%
TGGAATAGAATGCATAATGT+TGG - chr5_3:57868630-57868649 Msa0820500:intron 30.0%
CAATCTCAACATCAAAAAAC+TGG - chr5_3:57869011-57869030 Msa0820500:intron 30.0%
TTAACCTCATATTCTGTTGA+TGG + chr5_3:57869241-57869260 None:intergenic 30.0%
ACTTTCAACAACAGCAAATA+AGG - chr5_3:57869324-57869343 Msa0820500:CDS 30.0%
TCATTATTCTCTAATATGCC+CGG - chr5_3:57869390-57869409 Msa0820500:CDS 30.0%
TAACTAATCTATGGTCATTG+AGG - chr5_3:57869606-57869625 Msa0820500:CDS 30.0%
AATGTGGACTTGTAATATCA+GGG - chr5_3:57869704-57869723 Msa0820500:CDS 30.0%
TGACTTCAATATCTTGCAAT+TGG - chr5_3:57869748-57869767 Msa0820500:CDS 30.0%
TTCTCCTTTGCTTATTTGAT+CGG + chr5_3:57870279-57870298 None:intergenic 30.0%
TCTTTACTACTTCTATTTGG+AGG + chr5_3:57870369-57870388 None:intergenic 30.0%
AGCAATGACACTTTCTTAAA+AGG - chr5_3:57870470-57870489 Msa0820500:intron 30.0%
! AAGTTAAGTTTCAAGTATCC+AGG - chr5_3:57870578-57870597 Msa0820500:intron 30.0%
! AGTTAAGTTTCAAGTATCCA+GGG - chr5_3:57870579-57870598 Msa0820500:intron 30.0%
GATGGATGATACACATATTT+AGG + chr5_3:57870679-57870698 None:intergenic 30.0%
!! AATTGATTTGTATGCGATGA+TGG + chr5_3:57870697-57870716 None:intergenic 30.0%
!!! TTAGTTTTTTTTCCTTGCCA+TGG - chr5_3:57870839-57870858 Msa0820500:intron 30.0%
!! TCTAGCCTAGATTTTAACAT+GGG + chr5_3:57870926-57870945 None:intergenic 30.0%
CAAAGTTTCATTTAATAGCC+GGG - chr5_3:57871171-57871190 Msa0820500:CDS 30.0%
! GTGAGTATGTATCATTTTGA+TGG - chr5_3:57871201-57871220 Msa0820500:CDS 30.0%
TTGTTTGATAGGAAAGGATT+TGG - chr5_3:57871353-57871372 Msa0820500:CDS 30.0%
CATAATGTGGATGCTGAATT+TGG - chr5_3:57866168-57866187 Msa0820500:three_prime_UTR 35.0%
TTTGGTCAAGTTAATGATGC+TGG - chr5_3:57866186-57866205 Msa0820500:three_prime_UTR 35.0%
AGTTAATGATGCTGGAAACT+CGG - chr5_3:57866194-57866213 Msa0820500:three_prime_UTR 35.0%
AAATACGGCTCCGAAAAATA+TGG + chr5_3:57866249-57866268 None:intergenic 35.0%
!! ATATTTTTCGGAGCCGTATT+TGG - chr5_3:57866248-57866267 Msa0820500:three_prime_UTR 35.0%
!! TATTTTTCGGAGCCGTATTT+GGG - chr5_3:57866249-57866268 Msa0820500:three_prime_UTR 35.0%
TCAAATACCATGCCCAAATA+CGG + chr5_3:57866264-57866283 None:intergenic 35.0%
GATGATTAGGATAGAGCAAA+AGG - chr5_3:57866452-57866471 Msa0820500:three_prime_UTR 35.0%
AGCAAAAGGGTCAAAATAAG+TGG - chr5_3:57866466-57866485 Msa0820500:three_prime_UTR 35.0%
GCAAAAGGGTCAAAATAAGT+GGG - chr5_3:57866467-57866486 Msa0820500:three_prime_UTR 35.0%
! TGAAGTTTTTCCACCTTATC+AGG + chr5_3:57866537-57866556 None:intergenic 35.0%
GATATATACATGACACCAGT+TGG + chr5_3:57866627-57866646 None:intergenic 35.0%
CTTTCATAAAATACTCCAGC+AGG + chr5_3:57866809-57866828 None:intergenic 35.0%
!! GGAGTATTTTATGAAAGTGC+AGG - chr5_3:57866812-57866831 Msa0820500:intron 35.0%
GTATTGCATAGAAGAAACCA+GGG + chr5_3:57866845-57866864 None:intergenic 35.0%
TGTATTGCATAGAAGAAACC+AGG + chr5_3:57866846-57866865 None:intergenic 35.0%
! ATCGTATGTCTACTGTGTTT+TGG - chr5_3:57866880-57866899 Msa0820500:intron 35.0%
! TCGTATGTCTACTGTGTTTT+GGG - chr5_3:57866881-57866900 Msa0820500:intron 35.0%
TAACCTGACAGAAACAATTG+AGG - chr5_3:57867298-57867317 Msa0820500:intron 35.0%
AATGAATCACGGAAATATGC+TGG + chr5_3:57867419-57867438 None:intergenic 35.0%
!!! AGGATTTGAAGCCTCTTTTT+TGG - chr5_3:57867463-57867482 Msa0820500:intron 35.0%
!!! TTTGAAGCCTCTTTTTTGGA+CGG - chr5_3:57867467-57867486 Msa0820500:intron 35.0%
!! ACATTGGTAATGTTGTATGC+CGG + chr5_3:57867502-57867521 None:intergenic 35.0%
TCATACTGCCTAAAGAACAT+TGG + chr5_3:57867518-57867537 None:intergenic 35.0%
TCTGGAGAAATGGTTTGAAA+AGG - chr5_3:57867544-57867563 Msa0820500:intron 35.0%
!! TGCCAAATGTTTGAGTTTTC+AGG - chr5_3:57867827-57867846 Msa0820500:intron 35.0%
TGCCTGAAAACTCAAACATT+TGG + chr5_3:57867832-57867851 None:intergenic 35.0%
!! AGTTTTCAGGCATTCTTTGT+AGG - chr5_3:57867840-57867859 Msa0820500:intron 35.0%
CATCCCACTACATCTTAAAA+CGG - chr5_3:57867906-57867925 Msa0820500:intron 35.0%
ATTGTATTGGATGAATGTGG+TGG - chr5_3:57867953-57867972 Msa0820500:intron 35.0%
CATATGAGTCTTTGACATCA+CGG - chr5_3:57867987-57868006 Msa0820500:intron 35.0%
TGTATCTGATGTTGAAGTAG+GGG + chr5_3:57868206-57868225 None:intergenic 35.0%
CTTGTATCTGATGTTGAAGT+AGG + chr5_3:57868208-57868227 None:intergenic 35.0%
! TTCCAACACCTTCATTTTGT+TGG - chr5_3:57868723-57868742 Msa0820500:intron 35.0%
!!! CTTCATTTTGTTGGCTTTGA+GGG - chr5_3:57868732-57868751 Msa0820500:intron 35.0%
!!! TTCATTTTGTTGGCTTTGAG+GGG - chr5_3:57868733-57868752 Msa0820500:intron 35.0%
CTTGAGAAGAGTTTATGAAG+AGG - chr5_3:57868789-57868808 Msa0820500:intron 35.0%
ACATGACAGAATAAAAGGAC+TGG + chr5_3:57868887-57868906 None:intergenic 35.0%
! GTCCTTTTATTCTGTCATGT+AGG - chr5_3:57868887-57868906 Msa0820500:intron 35.0%
CACCTACATGACAGAATAAA+AGG + chr5_3:57868892-57868911 None:intergenic 35.0%
! CTTTTATTCTGTCATGTAGG+TGG - chr5_3:57868890-57868909 Msa0820500:intron 35.0%
!! ATCTTTGAAGTCAATGACGT+GGG - chr5_3:57868920-57868939 Msa0820500:intron 35.0%
ACATACCTTGAGATTGACAA+CGG + chr5_3:57868985-57869004 None:intergenic 35.0%
CAACATCAAAAAACTGGTAG+TGG - chr5_3:57869017-57869036 Msa0820500:intron 35.0%
CTAACACTAAAAAAGGACCA+TGG + chr5_3:57869115-57869134 None:intergenic 35.0%
CTTTGTTAAAATGATGCGAC+AGG + chr5_3:57869154-57869173 None:intergenic 35.0%
TCAGTCATAGACTTCAAAAC+AGG + chr5_3:57869292-57869311 None:intergenic 35.0%
TTGAAGTCTATGACTGAAGT+CGG - chr5_3:57869295-57869314 Msa0820500:CDS 35.0%
GGTTGCTGTAATAAATCTCA+AGG - chr5_3:57869345-57869364 Msa0820500:CDS 35.0%
TTGCTCTGTTATTCTAGTAC+TGG - chr5_3:57869426-57869445 Msa0820500:CDS 35.0%
TGCAATTGTCTTCGTACTAA+CGG - chr5_3:57869468-57869487 Msa0820500:CDS 35.0%
TAACGGGATGTAAAGCAAAA+AGG - chr5_3:57869485-57869504 Msa0820500:CDS 35.0%
AACGGGATGTAAAGCAAAAA+GGG - chr5_3:57869486-57869505 Msa0820500:CDS 35.0%
GAATGTGGACTTGTAATATC+AGG - chr5_3:57869703-57869722 Msa0820500:CDS 35.0%
! TATCGATGTCTAAGATGCTT+TGG - chr5_3:57869927-57869946 Msa0820500:CDS 35.0%
ACAAAAGAAAATGGGAGACA+TGG + chr5_3:57870035-57870054 None:intergenic 35.0%
! GTCTCCCATTTTCTTTTGTT+TGG - chr5_3:57870036-57870055 Msa0820500:CDS 35.0%
!! TAGAAGGAACTAAGTTGATG+TGG - chr5_3:57870078-57870097 Msa0820500:CDS 35.0%
!! AGAAGGAACTAAGTTGATGT+GGG - chr5_3:57870079-57870098 Msa0820500:CDS 35.0%
ATTTAATGTGGGGGTCTATT+TGG - chr5_3:57870192-57870211 Msa0820500:CDS 35.0%
ATTTGATCGGATGGAAAAGT+GGG + chr5_3:57870266-57870285 None:intergenic 35.0%
TATTTGATCGGATGGAAAAG+TGG + chr5_3:57870267-57870286 None:intergenic 35.0%
TGGCTTTCTTGTAACATAGT+TGG + chr5_3:57870736-57870755 None:intergenic 35.0%
!! CTCTAGCCTAGATTTTAACA+TGG + chr5_3:57870927-57870946 None:intergenic 35.0%
!!! TTTCGACGCTTTTTTGACAT+AGG + chr5_3:57871142-57871161 None:intergenic 35.0%
TCGTACATGTATCATATCGT+AGG - chr5_3:57871322-57871341 Msa0820500:CDS 35.0%
! GAAGACTTGTTTGATAGGAA+AGG - chr5_3:57871347-57871366 Msa0820500:CDS 35.0%
! TATACTTTCTTTTCTCTCCC+TGG + chr5_3:57871445-57871464 None:intergenic 35.0%
AGAGTCACTATATCCAAGTT+TGG - chr5_3:57871487-57871506 Msa0820500:CDS 35.0%
CATGTGATAACTATCGGAGA+AGG - chr5_3:57866129-57866148 Msa0820500:three_prime_UTR 40.0%
ATAACTATCGGAGAAGGAAG+TGG - chr5_3:57866135-57866154 Msa0820500:three_prime_UTR 40.0%
TGGATCGATGGAACATAATG+TGG - chr5_3:57866155-57866174 Msa0820500:three_prime_UTR 40.0%
GTTAATGATGCTGGAAACTC+GGG - chr5_3:57866195-57866214 Msa0820500:three_prime_UTR 40.0%
! GGTTTCGGAGCCATATTTTT+CGG - chr5_3:57866236-57866255 Msa0820500:three_prime_UTR 40.0%
ACGGTCAGTTTAATGCTGAT+GGG - chr5_3:57866358-57866377 Msa0820500:three_prime_UTR 40.0%
CTGATGGGACAAATATGTTC+CGG - chr5_3:57866373-57866392 Msa0820500:three_prime_UTR 40.0%
TGATGGGACAAATATGTTCC+GGG - chr5_3:57866374-57866393 Msa0820500:three_prime_UTR 40.0%
!! ACACTAGAAAAGTGCTTCAC+TGG + chr5_3:57866561-57866580 None:intergenic 40.0%
!! GTGAAGCACTTTTCTAGTGT+TGG - chr5_3:57866561-57866580 Msa0820500:exon 40.0%
ACCATGCCTGAAACTTACAA+AGG - chr5_3:57866588-57866607 Msa0820500:CDS 40.0%
TCCTTTGTAAGTTTCAGGCA+TGG + chr5_3:57866592-57866611 None:intergenic 40.0%
CCTGAAACTTACAAAGGACT+GGG - chr5_3:57866594-57866613 Msa0820500:CDS 40.0%
CTGAAACTTACAAAGGACTG+GGG - chr5_3:57866595-57866614 Msa0820500:CDS 40.0%
!! CACATTATAAGGCATCGAAG+TGG + chr5_3:57866742-57866761 None:intergenic 40.0%
CTTCGATGCCTTATAATGTG+AGG - chr5_3:57866742-57866761 Msa0820500:intron 40.0%
! ATGGGTTGCCTCACATTATA+AGG + chr5_3:57866753-57866772 None:intergenic 40.0%
! AGGACAGCTTACAGTCATTT+TGG - chr5_3:57866918-57866937 Msa0820500:intron 40.0%
TGATGGTTTATCCCAGTGAA+TGG + chr5_3:57867002-57867021 None:intergenic 40.0%
TTCACTGGGATAAACCATCA+TGG - chr5_3:57867002-57867021 Msa0820500:intron 40.0%
!!! GATGATTCTGAGGCTTCTTT+TGG - chr5_3:57867059-57867078 Msa0820500:intron 40.0%
!!! ATTCTGAGGCTTCTTTTGGT+TGG - chr5_3:57867063-57867082 Msa0820500:intron 40.0%
TAGTTATAGAGAGAGGGTGA+CGG + chr5_3:57867121-57867140 None:intergenic 40.0%
GATCGGTAGTTATAGAGAGA+GGG + chr5_3:57867127-57867146 None:intergenic 40.0%
TGATCGGTAGTTATAGAGAG+AGG + chr5_3:57867128-57867147 None:intergenic 40.0%
TCTCTCTATAACTACCGATC+AGG - chr5_3:57867127-57867146 Msa0820500:CDS 40.0%
TTGTATGCATCTGTCCTGAT+CGG + chr5_3:57867144-57867163 None:intergenic 40.0%
AAACGTTATGTCTTGCGAGA+AGG - chr5_3:57867209-57867228 Msa0820500:intron 40.0%
! ATACATGGCCCAATTTTTCG+TGG + chr5_3:57867235-57867254 None:intergenic 40.0%
!! ACTCCTCAATTGTTTCTGTC+AGG + chr5_3:57867304-57867323 None:intergenic 40.0%
TTGATCACGAGCACTATACA+AGG + chr5_3:57867390-57867409 None:intergenic 40.0%
TGTATAGTGCTCGTGATCAA+TGG - chr5_3:57867390-57867409 Msa0820500:intron 40.0%
GTATAGTGCTCGTGATCAAT+GGG - chr5_3:57867391-57867410 Msa0820500:intron 40.0%
GCTGTAATATCTCCTACTCA+AGG - chr5_3:57867443-57867462 Msa0820500:intron 40.0%
!! ATGAACTAGCTCTGGAGAAA+TGG - chr5_3:57867534-57867553 Msa0820500:intron 40.0%
TTAGCAACCTGATTCTCCAT+TGG + chr5_3:57867626-57867645 None:intergenic 40.0%
GATGGGGTGAATAGCATATT+TGG - chr5_3:57867728-57867747 Msa0820500:intron 40.0%
! AGTTAGCTCTCAATTCAGAC+TGG + chr5_3:57867802-57867821 None:intergenic 40.0%
!!! CGTTTTAAGATGTAGTGGGA+TGG + chr5_3:57867908-57867927 None:intergenic 40.0%
!!! CCACCGTTTTAAGATGTAGT+GGG + chr5_3:57867912-57867931 None:intergenic 40.0%
!!! TCCACCGTTTTAAGATGTAG+TGG + chr5_3:57867913-57867932 None:intergenic 40.0%
CATCTTAAAACGGTGGACAA+TGG - chr5_3:57867916-57867935 Msa0820500:intron 40.0%
ACTTATGATGCTGCAATGAC+TGG - chr5_3:57868070-57868089 Msa0820500:intron 40.0%
! CAAGTACAACCCCTCTTTTA+TGG - chr5_3:57868224-57868243 Msa0820500:intron 40.0%
GTTAAGTGGCCATAAAAGAG+GGG + chr5_3:57868236-57868255 None:intergenic 40.0%
CGTTAAGTGGCCATAAAAGA+GGG + chr5_3:57868237-57868256 None:intergenic 40.0%
TCGTTAAGTGGCCATAAAAG+AGG + chr5_3:57868238-57868257 None:intergenic 40.0%
GTCGATGTTTCATCGTTAAG+TGG + chr5_3:57868250-57868269 None:intergenic 40.0%
GGTAAATTCAGATCAGCCAT+TGG + chr5_3:57868307-57868326 None:intergenic 40.0%
TGGAAATTCCGCCTTTATTG+CGG - chr5_3:57868650-57868669 Msa0820500:intron 40.0%
CAAACCAAAGGTCGCAATTT+AGG + chr5_3:57868690-57868709 None:intergenic 40.0%
! AGCCAACAAAATGAAGGTGT+TGG + chr5_3:57868728-57868747 None:intergenic 40.0%
CCTCAAAGCCAACAAAATGA+AGG + chr5_3:57868734-57868753 None:intergenic 40.0%
!!! CCTTCATTTTGTTGGCTTTG+AGG - chr5_3:57868731-57868750 Msa0820500:intron 40.0%
!!! TCATTTTGTTGGCTTTGAGG+GGG - chr5_3:57868734-57868753 Msa0820500:intron 40.0%
GAGAAGAGTTTATGAAGAGG+AGG - chr5_3:57868792-57868811 Msa0820500:intron 40.0%
CTAACTCATCCTTACAAGAC+CGG + chr5_3:57868836-57868855 None:intergenic 40.0%
!! CACGTCATTGACTTCAAAGA+TGG + chr5_3:57868921-57868940 None:intergenic 40.0%
!! CATCTTTGAAGTCAATGACG+TGG - chr5_3:57868919-57868938 Msa0820500:intron 40.0%
TACTCTGTTCTCTGGATTTG+AGG + chr5_3:57868961-57868980 None:intergenic 40.0%
GAGTTTCTCAAGTGAAACAC+AGG + chr5_3:57869077-57869096 None:intergenic 40.0%
GAGTCCATCAACAGAATATG+AGG - chr5_3:57869234-57869253 Msa0820500:CDS 40.0%
AGGTTAAGTTCCATCTCTCT+CGG - chr5_3:57869254-57869273 Msa0820500:CDS 40.0%
TGAAGTCTATGACTGAAGTC+GGG - chr5_3:57869296-57869315 Msa0820500:CDS 40.0%
AGCAACAAAGCATATGAACC+GGG + chr5_3:57869411-57869430 None:intergenic 40.0%
GAGCAACAAAGCATATGAAC+CGG + chr5_3:57869412-57869431 None:intergenic 40.0%
GCAATTGTCTTCGTACTAAC+GGG - chr5_3:57869469-57869488 Msa0820500:CDS 40.0%
TAATCTATGGTCATTGAGGC+TGG - chr5_3:57869610-57869629 Msa0820500:CDS 40.0%
GGACTTGTAATATCAGGGAA+AGG - chr5_3:57869709-57869728 Msa0820500:CDS 40.0%
!! TCAGGGAAAGGCATTAAACT+TGG - chr5_3:57869721-57869740 Msa0820500:CDS 40.0%
! TGTCTAAGATGCTTTGGTTG+CGG - chr5_3:57869933-57869952 Msa0820500:CDS 40.0%
TGGAGAGAATATAGCGTAGA+AGG - chr5_3:57870062-57870081 Msa0820500:CDS 40.0%
!! GAAGGAACTAAGTTGATGTG+GGG - chr5_3:57870080-57870099 Msa0820500:CDS 40.0%
!! AAGGAACTAAGTTGATGTGG+GGG - chr5_3:57870081-57870100 Msa0820500:CDS 40.0%
TTTGATCGGATGGAAAAGTG+GGG + chr5_3:57870265-57870284 None:intergenic 40.0%
CCTTTGCTTATTTGATCGGA+TGG + chr5_3:57870275-57870294 None:intergenic 40.0%
CCATCCGATCAAATAAGCAA+AGG - chr5_3:57870272-57870291 Msa0820500:CDS 40.0%
ATGGATAGACAGAGAGAAAG+AGG + chr5_3:57870311-57870330 None:intergenic 40.0%
TACTACTTCTATTTGGAGGC+TGG + chr5_3:57870365-57870384 None:intergenic 40.0%
TCCAGAGATGGAAAACTAGT+TGG + chr5_3:57870756-57870775 None:intergenic 40.0%
!!! AACTAGTTTTCCATCTCTGG+AGG - chr5_3:57870755-57870774 Msa0820500:intron 40.0%
CTAATCTGAGCTAAGGGTTA+AGG + chr5_3:57870886-57870905 None:intergenic 40.0%
GCTCAACTAATCTGAGCTAA+GGG + chr5_3:57870892-57870911 None:intergenic 40.0%
AGCTCAACTAATCTGAGCTA+AGG + chr5_3:57870893-57870912 None:intergenic 40.0%
!! GATTTTAACATGGGTGGGTT+GGG + chr5_3:57870917-57870936 None:intergenic 40.0%
!! AGATTTTAACATGGGTGGGT+TGG + chr5_3:57870918-57870937 None:intergenic 40.0%
ACCCACCCATGTTAAAATCT+AGG - chr5_3:57870918-57870937 Msa0820500:intron 40.0%
!! GCCTAGATTTTAACATGGGT+GGG + chr5_3:57870922-57870941 None:intergenic 40.0%
!! AGCCTAGATTTTAACATGGG+TGG + chr5_3:57870923-57870942 None:intergenic 40.0%
AGTTTCATTTAATAGCCGGG+TGG - chr5_3:57871174-57871193 Msa0820500:CDS 40.0%
TACATACTCACATAACCACC+CGG + chr5_3:57871192-57871211 None:intergenic 40.0%
!! GTATCATTTTGATGGCTGTG+TGG - chr5_3:57871209-57871228 Msa0820500:CDS 40.0%
! AGGCAGAAGACTTGTTTGAT+AGG - chr5_3:57871342-57871361 Msa0820500:CDS 40.0%
! ATTGATTGTTTGGAGCTGCA+GGG + chr5_3:57871390-57871409 None:intergenic 40.0%
! AATTGATTGTTTGGAGCTGC+AGG + chr5_3:57871391-57871410 None:intergenic 40.0%
ATGGGTTTAAGAACTTGTCC+AGG - chr5_3:57871424-57871443 Msa0820500:CDS 40.0%
TGGGTTTAAGAACTTGTCCA+GGG - chr5_3:57871425-57871444 Msa0820500:CDS 40.0%
! TCATGCTGAGGGTATGGTTT+CGG - chr5_3:57866221-57866240 Msa0820500:three_prime_UTR 45.0%
TAGTGAGTATGCTAGACGGT+CGG - chr5_3:57866311-57866330 Msa0820500:three_prime_UTR 45.0%
!! AGCTCAAAAGCTGGTTTGCA+CGG - chr5_3:57866339-57866358 Msa0820500:three_prime_UTR 45.0%
CACGGTCAGTTTAATGCTGA+TGG - chr5_3:57866357-57866376 Msa0820500:three_prime_UTR 45.0%
GCAGGGAAGGTTTGAAAAGA+AGG - chr5_3:57866409-57866428 Msa0820500:three_prime_UTR 45.0%
AAGGATGACTGAAAGTTGCG+AGG - chr5_3:57866428-57866447 Msa0820500:three_prime_UTR 45.0%
AAAGTTGCGAGGCGATGATT+AGG - chr5_3:57866439-57866458 Msa0820500:three_prime_UTR 45.0%
GAAGGAACATAGCCATTCTC+TGG - chr5_3:57866506-57866525 Msa0820500:three_prime_UTR 45.0%
GCCTGAAACTTACAAAGGAC+TGG - chr5_3:57866593-57866612 Msa0820500:CDS 45.0%
CCCAGTCCTTTGTAAGTTTC+AGG + chr5_3:57866597-57866616 None:intergenic 45.0%
! AACTGGATGACTCGTTTTCG+CGG + chr5_3:57866712-57866731 None:intergenic 45.0%
TTTGGGCAGATGCAAGATCA+AGG - chr5_3:57866898-57866917 Msa0820500:intron 45.0%
!!! TTTTGGTGATGCAGTTACCC+TGG - chr5_3:57866935-57866954 Msa0820500:intron 45.0%
TGCTCTATGTGTTGTGTCCA+GGG + chr5_3:57866955-57866974 None:intergenic 45.0%
TTGCTCTATGTGTTGTGTCC+AGG + chr5_3:57866956-57866975 None:intergenic 45.0%
TGCCATATGCTCCATTCACT+GGG - chr5_3:57866988-57867007 Msa0820500:intron 45.0%
ATCCCAGTGAATGGAGCATA+TGG + chr5_3:57866993-57867012 None:intergenic 45.0%
TTTATGCAGTGACGTGCTTG+GGG + chr5_3:57867188-57867207 None:intergenic 45.0%
GTTTATGCAGTGACGTGCTT+GGG + chr5_3:57867189-57867208 None:intergenic 45.0%
TGTTTATGCAGTGACGTGCT+TGG + chr5_3:57867190-57867209 None:intergenic 45.0%
CGAGAAGGCCACGAAAAATT+GGG - chr5_3:57867224-57867243 Msa0820500:intron 45.0%
AAGGATGCATGCGACATACA+TGG + chr5_3:57867250-57867269 None:intergenic 45.0%
! ATGAACTCAGAGGGCATGAT+TGG - chr5_3:57867357-57867376 Msa0820500:intron 45.0%
GAGGCTTCAAATCCTTGAGT+AGG + chr5_3:57867458-57867477 None:intergenic 45.0%
TAGGCAGTATGAACTAGCTC+TGG - chr5_3:57867526-57867545 Msa0820500:intron 45.0%
TCTAAAGACACCTTCGCCAA+TGG - chr5_3:57867607-57867626 Msa0820500:intron 45.0%
ATCCTCTTCGATTCTGTTGG+CGG + chr5_3:57867711-57867730 None:intergenic 45.0%
CCAACAGAATCGAAGAGGAT+GGG - chr5_3:57867711-57867730 Msa0820500:intron 45.0%
CAACAGAATCGAAGAGGATG+GGG - chr5_3:57867712-57867731 Msa0820500:intron 45.0%
CCCACTACATCTTAAAACGG+TGG - chr5_3:57867909-57867928 Msa0820500:intron 45.0%
ACCTTCCTCAGCATATCTGA+TGG + chr5_3:57868035-57868054 None:intergenic 45.0%
!! GCAATGACTGGTCTTAGAGA+AGG - chr5_3:57868082-57868101 Msa0820500:intron 45.0%
!! ATGACTGGTCTTAGAGAAGG+TGG - chr5_3:57868085-57868104 Msa0820500:intron 45.0%
!! CAACTAATCATCGACTCAGC+TGG - chr5_3:57868152-57868171 Msa0820500:intron 45.0%
TGAAGTAGGGGTTCTCTTGT+CGG + chr5_3:57868194-57868213 None:intergenic 45.0%
! AGATCAGCCATTGGTTGAAC+AGG + chr5_3:57868298-57868317 None:intergenic 45.0%
TTTACCACAAACGACCCCAA+TGG - chr5_3:57868321-57868340 Msa0820500:intron 45.0%
! AACTTGCTTACGTGCCATTG+GGG + chr5_3:57868338-57868357 None:intergenic 45.0%
! CAACTTGCTTACGTGCCATT+GGG + chr5_3:57868339-57868358 None:intergenic 45.0%
! TCAACTTGCTTACGTGCCAT+TGG + chr5_3:57868340-57868359 None:intergenic 45.0%
TGATGGTCCACCTGAAAACA+CGG - chr5_3:57868555-57868574 Msa0820500:intron 45.0%
! TCTTGCCATACCGTGTTTTC+AGG + chr5_3:57868568-57868587 None:intergenic 45.0%
CTGCAATGAAGGCAAACCAA+AGG + chr5_3:57868702-57868721 None:intergenic 45.0%
! CGGTCTTGTAAGGATGAGTT+AGG - chr5_3:57868834-57868853 Msa0820500:intron 45.0%
GAAGTCAATGACGTGGGTAA+TGG - chr5_3:57868926-57868945 Msa0820500:intron 45.0%
AGTAGCCGTTGTCAATCTCA+AGG - chr5_3:57868977-57868996 Msa0820500:intron 45.0%
CTTGAGAAACTCCTGCCATT+CGG - chr5_3:57869085-57869104 Msa0820500:intron 45.0%
GGTTAAGTTCCATCTCTCTC+GGG - chr5_3:57869255-57869274 Msa0820500:CDS 45.0%
GAAGTCTATGACTGAAGTCG+GGG - chr5_3:57869297-57869316 Msa0820500:CDS 45.0%
GGGATGTAAAGCAAAAAGGG+TGG - chr5_3:57869489-57869508 Msa0820500:CDS 45.0%
TGAAGATGCTGTCGAGAATG+TGG - chr5_3:57869688-57869707 Msa0820500:CDS 45.0%
! GTCTAAGATGCTTTGGTTGC+GGG - chr5_3:57869934-57869953 Msa0820500:CDS 45.0%
!! TGTCTCAGCTTGATAATGCC+CGG - chr5_3:57870539-57870558 Msa0820500:intron 45.0%
TCAAGTATCCAGGGATGCAT+TGG - chr5_3:57870588-57870607 Msa0820500:intron 45.0%
CAAGTATCCAGGGATGCATT+GGG - chr5_3:57870589-57870608 Msa0820500:intron 45.0%
!!! GCCAACTAGTTTTCCATCTC+TGG - chr5_3:57870752-57870771 Msa0820500:intron 45.0%
GATTATTACGCCTCCAGAGA+TGG + chr5_3:57870768-57870787 None:intergenic 45.0%
AGCTAAGGGTTAAGGAGTTG+AGG + chr5_3:57870878-57870897 None:intergenic 45.0%
!! TCATTTTGATGGCTGTGTGG+TGG - chr5_3:57871212-57871231 Msa0820500:CDS 45.0%
ACGGTAGTTGTCACCAAACT+TGG + chr5_3:57871503-57871522 None:intergenic 45.0%
AAACTCGGGATCTCATGCTG+AGG - chr5_3:57866209-57866228 Msa0820500:three_prime_UTR 50.0%
AACTCGGGATCTCATGCTGA+GGG - chr5_3:57866210-57866229 Msa0820500:three_prime_UTR 50.0%
AGTGAGTATGCTAGACGGTC+GGG - chr5_3:57866312-57866331 Msa0820500:three_prime_UTR 50.0%
TCGGGTTTCAGCTCAAAAGC+TGG - chr5_3:57866330-57866349 Msa0820500:three_prime_UTR 50.0%
GAGTTTGTGTGTAGCAGGGA+AGG - chr5_3:57866396-57866415 Msa0820500:three_prime_UTR 50.0%
GGAACATAGCCATTCTCTGG+CGG - chr5_3:57866509-57866528 Msa0820500:three_prime_UTR 50.0%
! TATCAGGTACCGCCAGAGAA+TGG + chr5_3:57866521-57866540 None:intergenic 50.0%
TTCTCTGGCGGTACCTGATA+AGG - chr5_3:57866521-57866540 Msa0820500:three_prime_UTR 50.0%
AGACATTAGGGAGGGATGCT+CGG - chr5_3:57866781-57866800 Msa0820500:intron 50.0%
AAAGTGCAGGCTGAAAACCC+TGG - chr5_3:57866825-57866844 Msa0820500:intron 50.0%
GTGCCATATGCTCCATTCAC+TGG - chr5_3:57866987-57867006 Msa0820500:intron 50.0%
GCGAGAAGGCCACGAAAAAT+TGG - chr5_3:57867223-57867242 Msa0820500:intron 50.0%
GACAACGCCGTCCAAAAAAG+AGG + chr5_3:57867477-57867496 None:intergenic 50.0%
! TTTTGGACGGCGTTGTCAAC+CGG - chr5_3:57867480-57867499 Msa0820500:intron 50.0%
!! GGCGAAGGTGTCTTTAGAAC+TGG + chr5_3:57867605-57867624 None:intergenic 50.0%
ACCTTCGCCAATGGAGAATC+AGG - chr5_3:57867616-57867635 Msa0820500:intron 50.0%
ACCTGATTCTCCATTGGCGA+AGG + chr5_3:57867620-57867639 None:intergenic 50.0%
TACCGCCAACAGAATCGAAG+AGG - chr5_3:57867706-57867725 Msa0820500:intron 50.0%
GCCAACAGAATCGAAGAGGA+TGG - chr5_3:57867710-57867729 Msa0820500:intron 50.0%
CCCATCCTCTTCGATTCTGT+TGG + chr5_3:57867714-57867733 None:intergenic 50.0%
CAGCATATCTGATGGCTTCC+CGG + chr5_3:57868027-57868046 None:intergenic 50.0%
GGAAGCCATCAGATATGCTG+AGG - chr5_3:57868027-57868046 Msa0820500:intron 50.0%
GCCATCAGATATGCTGAGGA+AGG - chr5_3:57868031-57868050 Msa0820500:intron 50.0%
!! TGAGGAAGGTGCTGTAGCTA+TGG - chr5_3:57868045-57868064 Msa0820500:intron 50.0%
GAAGTAGGGGTTCTCTTGTC+GGG + chr5_3:57868193-57868212 None:intergenic 50.0%
CGATGCTCCTGTTCAACCAA+TGG - chr5_3:57868288-57868307 Msa0820500:intron 50.0%
GGACCATCATCTTGCTGAAG+AGG + chr5_3:57868544-57868563 None:intergenic 50.0%
GTCCACCTGAAAACACGGTA+TGG - chr5_3:57868560-57868579 Msa0820500:intron 50.0%
!! TGCCATACCGTGTTTTCAGG+TGG + chr5_3:57868565-57868584 None:intergenic 50.0%
GTCGCAATTTAGGCGACTAG+GGG + chr5_3:57868680-57868699 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG + chr5_3:57868681-57868700 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG + chr5_3:57868682-57868701 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG - chr5_3:57868683-57868702 Msa0820500:intron 50.0%
! GGTGTTGGAAGCTGCAATGA+AGG + chr5_3:57868713-57868732 None:intergenic 50.0%
!!! TTTTGTTGGCTTTGAGGGGG+TGG - chr5_3:57868737-57868756 Msa0820500:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG - chr5_3:57868754-57868773 Msa0820500:intron 50.0%
GAGTGCTATCTGTCCGATGT+GGG + chr5_3:57868770-57868789 None:intergenic 50.0%
! AGAGTGCTATCTGTCCGATG+TGG + chr5_3:57868771-57868790 None:intergenic 50.0%
GCACTTCTCACCTTACAAGC+CGG - chr5_3:57868814-57868833 Msa0820500:intron 50.0%
!! CCTTACAAGACCGGCTTGTA+AGG + chr5_3:57868827-57868846 None:intergenic 50.0%
! CCTTACAAGCCGGTCTTGTA+AGG - chr5_3:57868824-57868843 Msa0820500:intron 50.0%
ACAACGGCTACTCTGTTCTC+TGG + chr5_3:57868969-57868988 None:intergenic 50.0%
AAGGACCATGGTCAACCGAA+TGG + chr5_3:57869103-57869122 None:intergenic 50.0%
CATCTCTCTCGGGTTACTGT+GGG - chr5_3:57869265-57869284 Msa0820500:CDS 50.0%
AAGAAAGAATCTGGCTGCCG+AGG - chr5_3:57869537-57869556 Msa0820500:CDS 50.0%
TCTATGGTCATTGAGGCTGG+TGG - chr5_3:57869613-57869632 Msa0820500:CDS 50.0%
!! GTCTCAGCTTGATAATGCCC+GGG - chr5_3:57870540-57870559 Msa0820500:intron 50.0%
!! CTTGATAATGCCCGGGTTTC+TGG - chr5_3:57870547-57870566 Msa0820500:intron 50.0%
CAGCACAAGAAAGTTGCTCG+CGG + chr5_3:57870642-57870661 None:intergenic 50.0%
GGTTAAGGAGTTGAGGTCCA+GGG + chr5_3:57870871-57870890 None:intergenic 50.0%
CGGAGAAGGAAGTGGATCGA+TGG - chr5_3:57866143-57866162 Msa0820500:three_prime_UTR 55.0%
GGGATCTCATGCTGAGGGTA+TGG - chr5_3:57866215-57866234 Msa0820500:three_prime_UTR 55.0%
TTCGGAGCCGTATTTGGGCA+TGG - chr5_3:57866254-57866273 Msa0820500:three_prime_UTR 55.0%
TCCGGGAGTTTGTGTGTAGC+AGG - chr5_3:57866391-57866410 Msa0820500:three_prime_UTR 55.0%
CCCTGCTACACACAAACTCC+CGG + chr5_3:57866395-57866414 None:intergenic 55.0%
CCGGGAGTTTGTGTGTAGCA+GGG - chr5_3:57866392-57866411 Msa0820500:three_prime_UTR 55.0%
TCTGGCGGTACCTGATAAGG+TGG - chr5_3:57866524-57866543 Msa0820500:three_prime_UTR 55.0%
GACATTAGGGAGGGATGCTC+GGG - chr5_3:57866782-57866801 Msa0820500:intron 55.0%
CACGGTATGCCAATCTGTGC+CGG - chr5_3:57868005-57868024 Msa0820500:intron 55.0%
ACGGTATGCCAATCTGTGCC+GGG - chr5_3:57868006-57868025 Msa0820500:intron 55.0%
AGGGGTTCTCTTGTCGGGAT+CGG + chr5_3:57868188-57868207 None:intergenic 55.0%
!! AACTCGCTGACGAGGCATTG+GGG + chr5_3:57868404-57868423 None:intergenic 55.0%
! CAACTCGCTGACGAGGCATT+GGG + chr5_3:57868405-57868424 None:intergenic 55.0%
TCAACTCGCTGACGAGGCAT+TGG + chr5_3:57868406-57868425 None:intergenic 55.0%
GGACTATCAACTCGCTGACG+AGG + chr5_3:57868412-57868431 None:intergenic 55.0%
AACTCGCTGACGAGACACTG+GGG + chr5_3:57868437-57868456 None:intergenic 55.0%
CAACTCGCTGACGAGACACT+GGG + chr5_3:57868438-57868457 None:intergenic 55.0%
TCAACTCGCTGACGAGACAC+TGG + chr5_3:57868439-57868458 None:intergenic 55.0%
! GTGTCTCGTCAGCGAGTTGA+TGG - chr5_3:57868439-57868458 Msa0820500:CDS 55.0%
!! ATCTCGCTGACGAGGCATTG+GGG + chr5_3:57868503-57868522 None:intergenic 55.0%
! CATCTCGCTGACGAGGCATT+GGG + chr5_3:57868504-57868523 None:intergenic 55.0%
TCATCTCGCTGACGAGGCAT+TGG + chr5_3:57868505-57868524 None:intergenic 55.0%
ATGCCTCGTCAGCGAGATGA+TGG - chr5_3:57868505-57868524 Msa0820500:CDS 55.0%
!! ATCTTGCTGAAGAGGCGCTG+GGG + chr5_3:57868536-57868555 None:intergenic 55.0%
!! CATCTTGCTGAAGAGGCGCT+GGG + chr5_3:57868537-57868556 None:intergenic 55.0%
! TCATCTTGCTGAAGAGGCGC+TGG + chr5_3:57868538-57868557 None:intergenic 55.0%
GCGCCTCTTCAGCAAGATGA+TGG - chr5_3:57868538-57868557 Msa0820500:intron 55.0%
CTAGGGGCAGACCGCAATAA+AGG + chr5_3:57868664-57868683 None:intergenic 55.0%
TCCTGCCATTCGGTTGACCA+TGG - chr5_3:57869095-57869114 Msa0820500:intron 55.0%
ACCATGGTCAACCGAATGGC+AGG + chr5_3:57869099-57869118 None:intergenic 55.0%
CCACAGTAACCCGAGAGAGA+TGG + chr5_3:57869267-57869286 None:intergenic 55.0%
CCATCTCTCTCGGGTTACTG+TGG - chr5_3:57869264-57869283 Msa0820500:CDS 55.0%
GTCATTGAGGCTGGTGGCAT+AGG - chr5_3:57869619-57869638 Msa0820500:CDS 55.0%
TTCAGACTCGCCAGAAACCC+GGG + chr5_3:57870560-57870579 None:intergenic 55.0%
CTTCAGACTCGCCAGAAACC+CGG + chr5_3:57870561-57870580 None:intergenic 55.0%
! GGGTGCTGTGCTACGATCAA+TGG - chr5_3:57870609-57870628 Msa0820500:intron 55.0%
CCAGGGTTCAAACCATGGCA+AGG + chr5_3:57870854-57870873 None:intergenic 55.0%
CCTTGCCATGGTTTGAACCC+TGG - chr5_3:57870851-57870870 Msa0820500:intron 55.0%
GAGGTCCAGGGTTCAAACCA+TGG + chr5_3:57870859-57870878 None:intergenic 55.0%
GGGTTAAGGAGTTGAGGTCC+AGG + chr5_3:57870872-57870891 None:intergenic 55.0%
! TGTTTGGAGCTGCAGGGTAG+AGG + chr5_3:57871384-57871403 None:intergenic 55.0%
! GGACTGGGGCTTGTTCCAAC+TGG - chr5_3:57866609-57866628 Msa0820500:intron 60.0%
GATGGCTTCCCGGCACAGAT+TGG + chr5_3:57868017-57868036 None:intergenic 60.0%
! CGTGCCATTGGGGTCGTTTG+TGG + chr5_3:57868328-57868347 None:intergenic 60.0%
!! AACTCGCTGACGAGGCACTG+GGG + chr5_3:57868371-57868390 None:intergenic 60.0%
! CAACTCGCTGACGAGGCACT+GGG + chr5_3:57868372-57868391 None:intergenic 60.0%
TCAACTCGCTGACGAGGCAC+TGG + chr5_3:57868373-57868392 None:intergenic 60.0%
GGACTCTCAACTCGCTGACG+AGG + chr5_3:57868379-57868398 None:intergenic 60.0%
TCAACTCGCCTACGAGGCAC+TGG + chr5_3:57868472-57868491 None:intergenic 60.0%
! GTGCCTCGTAGGCGAGTTGA+TGG - chr5_3:57868472-57868491 Msa0820500:CDS 60.0%
GGACCATCAACTCGCCTACG+AGG + chr5_3:57868478-57868497 None:intergenic 60.0%
GGACCATCATCTCGCTGACG+AGG + chr5_3:57868511-57868530 None:intergenic 60.0%
!! TCTTGCTGAAGAGGCGCTGG+GGG + chr5_3:57868535-57868554 None:intergenic 60.0%
GGGGCAGACCGCAATAAAGG+CGG + chr5_3:57868661-57868680 None:intergenic 60.0%
CACAGCACCCAATGCATCCC+TGG + chr5_3:57870599-57870618 None:intergenic 60.0%
! CTCGTTTTCGCGGCAGCTGC+AGG + chr5_3:57866702-57866721 None:intergenic 65.0%
!! CGCTGACGAGGCATTGGGGA+TGG + chr5_3:57868400-57868419 None:intergenic 65.0%
CGCTGACGAGACACTGGGGA+TGG + chr5_3:57868433-57868452 None:intergenic 65.0%
GTCCACGACCAGTGCCTCGT+AGG - chr5_3:57868461-57868480 Msa0820500:CDS 65.0%
!! CGCTGACGAGGCATTGGGGA+TGG + chr5_3:57868400-57868419 None:intergenic 65.0%
GAGGGATGCTCGGGACCTGC+TGG - chr5_3:57866791-57866810 Msa0820500:intron 70.0%
!! CGCTGACGAGGCACTGGGGA+TGG + chr5_3:57868367-57868386 None:intergenic 70.0%
!! CGCCTACGAGGCACTGGTCG+TGG + chr5_3:57868466-57868485 None:intergenic 70.0%
!! TGCTGAAGAGGCGCTGGGGG+CGG + chr5_3:57868532-57868551 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 57866120 57871621 57866120 ID=Msa0820500;Name=Msa0820500
chr5_3 mRNA 57866120 57871621 57866120 ID=Msa0820500-mRNA-1;Parent=Msa0820500;Name=Msa0820500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.6|1|1|1|5|456|737
chr5_3 exon 57866120 57866620 57866120 ID=Msa0820500-mRNA-1:exon:17547;Parent=Msa0820500-mRNA-1
chr5_3 exon 57867081 57867194 57867081 ID=Msa0820500-mRNA-1:exon:17546;Parent=Msa0820500-mRNA-1
chr5_3 exon 57868375 57868524 57868375 ID=Msa0820500-mRNA-1:exon:17545;Parent=Msa0820500-mRNA-1
chr5_3 exon 57869165 57870374 57869165 ID=Msa0820500-mRNA-1:exon:17544;Parent=Msa0820500-mRNA-1
chr5_3 exon 57870927 57871621 57870927 ID=Msa0820500-mRNA-1:exon:17543;Parent=Msa0820500-mRNA-1
chr5_3 CDS 57870927 57871621 57870927 ID=Msa0820500-mRNA-1:cds;Parent=Msa0820500-mRNA-1
chr5_3 CDS 57869165 57870374 57869165 ID=Msa0820500-mRNA-1:cds;Parent=Msa0820500-mRNA-1
chr5_3 CDS 57868375 57868524 57868375 ID=Msa0820500-mRNA-1:cds;Parent=Msa0820500-mRNA-1
chr5_3 CDS 57867081 57867194 57867081 ID=Msa0820500-mRNA-1:cds;Parent=Msa0820500-mRNA-1
chr5_3 CDS 57866576 57866620 57866576 ID=Msa0820500-mRNA-1:cds;Parent=Msa0820500-mRNA-1
chr5_3 three_prime_UTR 57866120 57866575 57866120 ID=Msa0820500-mRNA-1:three_prime_utr;Parent=Msa0820500-mRNA-1
Gene Sequence

>Msa0820500

ATGGATGTTCATGTGATAACTATCGGAGAAGGAAGTGGATCGATGGAACATAATGTGGATGCTGAATTTGGTCAAGTTAATGATGCTGGAAACTCGGGATCTCATGCTGAGGGTATGGTTTCGGAGCCATATTTTTCGGAGCCGTATTTGGGCATGGTATTTGATTCTGAAGATTCTGCTAAAAGTTTTTATAGTGAGTATGCTAGACGGTCGGGTTTCAGCTCAAAAGCTGGTTTGCACGGTCAGTTTAATGCTGATGGGACAAATATGTTCCGGGAGTTTGTGTGTAGCAGGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGCGAGGCGATGATTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAAGGAACATAGCCATTCTCTGGCGGTACCTGATAAGGTGGAAAAACTTCAACCAGTGAAGCACTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACAAAGGACTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGCGCATCACGTTTCCTCTGACAATAGTCAAAAGATTAGGAATTCTCCTGCAGCTGCCGCGAAAACGAGTCATCCAGTTAAAAATTCCACTTCGATGCCTTATAATGTGAGGCAACCCATTAAAAAGAAGACATTAGGGAGGGATGCTCGGGACCTGCTGGAAGGGCATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGATCAATGGGTTCCAGCATATTTCCGTGATTCATTTTTCGCTGTAATATCTCCTACTCAAGGATTTGAAGCCTCTTTTTTGGACGGCGTTGTCAACCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTCTGGAGAAATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTAATCCAGTTCTAAAGACACCTTCGCCAATGGAGAATCAGGTTGCTAAGCTTTATACACAGAGAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACCGCCAACAGAATCGAAGAGGATGGGGTGAATAGCATATTTGGAGTTGCAAAGTTTGATGATGTCGAAAAGTCGTACACTGTCACATTAAACCAGTCTGAATTGAGAGCTAACTGTACATGCCAAATGTTTGAGTTTTCAGGCATTCTTTGTAGGCACATTTTAACTGTTTTTACCGTGTCTAATGTATTCACTATACCATCCCACTACATCTTAAAACGGTGGACAATGGAAGCAAAAAACAGTATTGTATTGGATGAATGTGGTGGTGAATCACTTGCATATGAGTCTTTGACATCACGGTATGCCAATCTGTGCCGGGAAGCCATCAGATATGCTGAGGAAGGTGCTGTAGCTATGGAAACTTATGATGCTGCAATGACTGGTCTTAGAGAAGGTGGAAAGAAAGTTGATGTCATGAAGAGAAATATTGCCAAAGTGTCATCAACTAATCATCGACTCAGCTGGAATGATTGCTCCGATCCCGACAAGAGAACCCCTACTTCAACATCAGATACAAGTACAACCCCTCTTTTATGGCCACTTAACGATGAAACATCGACGTTTAATCTTAATGACGTCGATGCTCCTGTTCAACCAATGGCTGATCTGAATTTACCACAAACGACCCCAATGGCACGTAAGCAAGTTGATGTTCCATCCCCAGTGCCTCGTCAGCGAGTTGAGAGTCCATCCCCAATGCCTCGTCAGCGAGTTGATAGTCCATCCCCAGTGTCTCGTCAGCGAGTTGATGGTCCACGACCAGTGCCTCGTAGGCGAGTTGATGGTCCATCCCCAATGCCTCGTCAGCGAGATGATGGTCCGCCCCCAGCGCCTCTTCAGCAAGATGATGGTCCACCTGAAAACACGTTGCAAGATTACAACAAGAGTCCATCAACAGAATATGAGGTTAAGTTCCATCTCTCTCGGGTTACTGTGGGACCTGTTTTGAAGTCTATGACTGAAGTCGGGGAACAACTTTCAACAACAGCAAATAAGGTTGCTGTAATAAATCTCAAGCTTGATAATGCCCGGGTTTCTGGCGAGTCTGAAGTTAAGTTTCAAGTATCCAGGGATGCATTGGGTGCTGTGCTACGATCAATGGCTTATATCCGCGAGCAACTTTCTTGTGCTGGCGACGCGAACTCAGAACCTATGTCAAAAAAGCGTCGAAACTGA
Protein sequence

>Msa0820500

MDVHVITIGEGSGSMEHNVDAEFGQVNDAGNSGSHAEGMVSEPYFSEPYLGMVFDSEDSAKSFYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRRMTESCEAMIRIEQKGQNKWVVTKFVKEHSHSLAVPDKVEKLQPVKHFSSVGRTMPETYKGLGLVPTGVMYISIDAHHVSSDNSQKIRNSPAAAAKTSHPVKNSTSMPYNVRQPIKKKTLGRDARDLLEGHDWLQSLYSARDQWVPAYFRDSFFAVISPTQGFEASFLDGVVNRHTTLPMFFRQYELALEKWFEKEIESDFETISTNPVLKTPSPMENQVAKLYTQRIFLKFQEELVETFAYTANRIEEDGVNSIFGVAKFDDVEKSYTVTLNQSELRANCTCQMFEFSGILCRHILTVFTVSNVFTIPSHYILKRWTMEAKNSIVLDECGGESLAYESLTSRYANLCREAIRYAEEGAVAMETYDAAMTGLREGGKKVDVMKRNIAKVSSTNHRLSWNDCSDPDKRTPTSTSDTSTTPLLWPLNDETSTFNLNDVDAPVQPMADLNLPQTTPMARKQVDVPSPVPRQRVESPSPMPRQRVDSPSPVSRQRVDGPRPVPRRRVDGPSPMPRQRDDGPPPAPLQQDDGPPENTLQDYNKSPSTEYEVKFHLSRVTVGPVLKSMTEVGEQLSTTANKVAVINLKLDNARVSGESEVKFQVSRDALGAVLRSMAYIREQLSCAGDANSEPMSKKRRN*