AlfalfaGEDB | Msa0820710

M. sativa cultivar zhongmu-4 / Msa0820710

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820710	XP_024639128.2	78.156	499	45	6	1	473	1	461	0.0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820710	sp\|Q8S9H7\|DIV_ANTMA	63.014	73	23	2	283	354	134	203	1.02e-21	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820710	G7K310	78.156	499	45	6	1	473	1	461	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
Msa0820710	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820710	MtrunA17_Chr5g0440741	89.606	279	24	2	196	473	15	289	2.67e-170	480
Msa0820710	MtrunA17_Chr5g0440731	88.380	284	23	4	196	473	15	294	3.11e-166	470
Msa0820710	MtrunA17_Chr5g0440821	80.905	199	25	4	9	195	23	220	4.68e-97	312
Msa0820710	MtrunA17_Chr5g0409841	65.532	235	66	7	198	421	1	231	1.38e-85	262
Msa0820710	MtrunA17_Chr5g0440751	71.939	196	20	3	1	195	1	162	1.32e-82	253
Msa0820710	MtrunA17_Chr5g0440721	64.062	192	21	3	5	195	12	156	7.09e-70	219
Msa0820710	MtrunA17_Chr5g0409831	49.141	291	71	9	198	473	1	229	3.40e-61	199
Msa0820710	MtrunA17_Chr5g0409951	62.147	177	33	3	3	170	99	250	8.03e-59	194
Msa0820710	MtrunA17_Chr5g0409951	56.701	97	28	3	196	286	22	110	2.81e-20	90.1
Msa0820710	MtrunA17_Chr5g0429521	58.228	79	29	2	283	360	134	209	2.97e-22	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820710	AT5G58900.1	41.176	136	64	3	283	413	143	267	1.59e-23	100
Msa0820710	AT5G08520.1	56.790	81	31	2	279	358	115	192	1.36e-22	98.2
Msa0820710	AT5G04760.1	60.526	76	27	1	274	349	92	164	1.81e-22	95.9
Msa0820710	AT5G01200.1	61.429	70	23	2	283	351	148	214	3.39e-21	93.6
Msa0820710	AT2G38090.1	57.692	78	28	3	276	351	135	209	1.15e-20	92.8
Msa0820710	AT1G49010.1	53.659	82	33	3	279	358	131	209	3.43e-20	91.7
Msa0820710	AT5G61620.1	54.545	77	31	2	275	350	101	174	5.56e-19	88.2
Msa0820710	AT3G11280.2	42.500	120	54	4	283	393	129	242	1.19e-18	86.3
Msa0820710	AT3G11280.1	42.500	120	54	4	283	393	129	242	1.19e-18	86.3
Msa0820710	AT5G23650.1	52.632	76	33	1	283	358	122	194	2.72e-18	86.3

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Find 118 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTCCTGCTGCAGC+CGG	0.478250	5_3:-58219608	None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG	0.493395	5_3:+58220505	Msa0820710:CDS
AAATATTTCAAAAGAATTTG+TGG	0.425853	5_3:+58220813	Msa0820710:CDS
AACAATCGAACCTGAACAGA+AGG	0.565912	5_3:-58218962	None:intergenic
AACCTTGTCCTGCTGCAGCC+GGG	0.469596	5_3:-58219607	None:intergenic
AAGATGGCAGTGTCTTGAGG+AGG	0.644314	5_3:-58221180	None:intergenic
AAGGAAAGGGCATTGGACAG+AGG	0.658250	5_3:+58220518	Msa0820710:CDS
AAGTGTTGATGTTCCTGTGT+TGG	0.580284	5_3:+58218829	Msa0820710:CDS
AATCGGTTCTACAATTCCTT+CGG	0.444800	5_3:+58221098	Msa0820710:CDS
AATGTTTCTGTGCCTAGTGT+TGG	0.550067	5_3:+58218920	Msa0820710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTCTCAACATGATTCAT+AGG	-	chr5_3:58218905-58218924	None:intergenic	30.0%
CTCTTATGCTTGCAATAATA+TGG	-	chr5_3:58219120-58219139	None:intergenic	30.0%
TTTAATCACAGATCCATACA+CGG	-	chr5_3:58219327-58219346	None:intergenic	30.0%
TATGCTCTTGATTATCCAAA+TGG	+	chr5_3:58219698-58219717	Msa0820710:CDS	30.0%
TTACTTTGATACCATTGAAG+TGG	+	chr5_3:58219933-58219952	Msa0820710:intron	30.0%
AGAAGGAGAAAAAGAGAAAA+AGG	+	chr5_3:58220911-58220930	Msa0820710:CDS	30.0%
TAGAAGAAATCAAACGGTTC+TGG	+	chr5_3:58219347-58219366	Msa0820710:intron	35.0%
CTCTTGATTATCCAAATGGA+AGG	+	chr5_3:58219702-58219721	Msa0820710:CDS	35.0%
AGGCCAAATATCCAAAAACA+AGG	+	chr5_3:58219722-58219741	Msa0820710:CDS	35.0%
GTCAATGAAGTTCATTCACA+TGG	-	chr5_3:58219751-58219770	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	58218782	58221323	58218782	ID=Msa0820710;Name=Msa0820710
chr5_3	mRNA	58218782	58221323	58218782	ID=Msa0820710-mRNA-1;Parent=Msa0820710;Name=Msa0820710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|4\|0\|473
chr5_3	exon	58218782	58218973	58218782	ID=Msa0820710-mRNA-1:exon:17688;Parent=Msa0820710-mRNA-1
chr5_3	exon	58219350	58219743	58219350	ID=Msa0820710-mRNA-1:exon:17689;Parent=Msa0820710-mRNA-1
chr5_3	exon	58220271	58220550	58220271	ID=Msa0820710-mRNA-1:exon:17690;Parent=Msa0820710-mRNA-1
chr5_3	exon	58220768	58221323	58220768	ID=Msa0820710-mRNA-1:exon:17691;Parent=Msa0820710-mRNA-1
chr5_3	CDS	58218782	58218973	58218782	ID=Msa0820710-mRNA-1:cds;Parent=Msa0820710-mRNA-1
chr5_3	CDS	58219350	58219743	58219350	ID=Msa0820710-mRNA-1:cds;Parent=Msa0820710-mRNA-1
chr5_3	CDS	58220271	58220550	58220271	ID=Msa0820710-mRNA-1:cds;Parent=Msa0820710-mRNA-1
chr5_3	CDS	58220768	58221323	58220768	ID=Msa0820710-mRNA-1:cds;Parent=Msa0820710-mRNA-1

Gene Sequence

>Msa0820710

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTCACTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCTGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTCTTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTTCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAAAAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTGGCAAAAGAACTTTGA

Protein sequence

>Msa0820710

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFTVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYALDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPSQGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNKKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRNLLAKEL*