AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820940 MtrunA17_Chr5g0441141 71.575 292 24 9 8 266 10 275 8.90e-128 363
Msa0820940 MtrunA17_Chr5g0440761 71.174 281 28 7 8 261 10 264 1.65e-125 357
Msa0820940 MtrunA17_Chr5g0440781 87.079 178 18 2 8 181 10 186 8.45e-107 307
Msa0820940 MtrunA17_Chr5g0441131 73.885 157 39 1 2 156 1 157 4.88e-78 234
Msa0820940 MtrunA17_Chr5g0425591 93.548 93 6 0 2 94 1 93 3.03e-59 183
Msa0820940 MtrunA17_Chr1g0192411 49.057 159 75 4 2 155 1 158 3.79e-42 149
Msa0820940 MtrunA17_Chr1g0154031 44.444 171 82 4 11 169 77 246 6.85e-42 148
Msa0820940 MtrunA17_Chr1g0151941 41.341 179 96 4 10 180 12 189 2.61e-39 137
Msa0820940 MtrunA17_Chr3g0099131 52.542 118 55 1 8 125 39 155 2.77e-39 143
Msa0820940 MtrunA17_Chr4g0072451 53.503 157 20 5 5 154 2 112 4.73e-39 132
Msa0820940 MtrunA17_Chr2g0322521 53.782 119 54 1 11 129 30 147 1.15e-37 136
Msa0820940 MtrunA17_Chr4g0037141 47.761 134 66 3 8 140 10 140 2.26e-37 133
Msa0820940 MtrunA17_Chr3g0103281 50.000 118 57 2 9 125 11 127 2.62e-37 134
Msa0820940 MtrunA17_Chr8g0354661 38.798 183 108 2 11 193 38 216 2.85e-37 137
Msa0820940 MtrunA17_Chr5g0410961 52.066 121 56 2 10 129 12 131 4.05e-37 134
Msa0820940 MtrunA17_Chr4g0022881 50.847 118 57 1 10 127 12 128 6.85e-37 130
Msa0820940 MtrunA17_Chr3g0080861 39.130 161 92 3 11 166 38 197 7.14e-37 136
Msa0820940 MtrunA17_Chr7g0228231 50.862 116 56 1 3 118 7 121 2.12e-36 128
Msa0820940 MtrunA17_Chr2g0323411 47.692 130 66 2 11 139 13 141 7.46e-36 130
Msa0820940 MtrunA17_Chr8g0385321 53.982 113 50 2 10 121 12 123 1.61e-35 129
Msa0820940 MtrunA17_Chr1g0167691 39.429 175 99 4 11 185 13 180 1.84e-35 127
Msa0820940 MtrunA17_Chr6g0450101 51.351 111 53 1 3 113 7 116 4.02e-35 125
Msa0820940 MtrunA17_Chr4g0048511 51.327 113 53 2 11 122 14 125 4.38e-35 129
Msa0820940 MtrunA17_Chr3g0131121 53.097 113 51 2 10 121 12 123 4.82e-35 127
Msa0820940 MtrunA17_Chr5g0395281 37.245 196 108 6 4 185 6 200 6.59e-35 127
Msa0820940 MtrunA17_Chr4g0039971 47.287 129 63 3 1 125 1 128 6.66e-35 128
Msa0820940 MtrunA17_Chr2g0281071 52.679 112 51 2 11 121 14 124 6.69e-35 128
Msa0820940 MtrunA17_Chr2g0309911 48.718 117 58 2 6 121 7 122 8.22e-35 127
Msa0820940 MtrunA17_Chr3g0115821 48.333 120 60 2 11 129 13 131 8.58e-35 127
Msa0820940 MtrunA17_Chr7g0270891 43.919 148 73 3 11 149 13 159 1.82e-34 127
Msa0820940 MtrunA17_Chr7g0274581 50.467 107 51 2 11 116 13 118 1.95e-34 123
Msa0820940 MtrunA17_Chr1g0187761 51.456 103 49 1 11 113 13 114 2.29e-34 124
Msa0820940 MtrunA17_Chr1g0209661 37.500 176 81 4 11 158 28 202 2.56e-34 125
Msa0820940 MtrunA17_Chr1g0193371 46.269 134 66 3 11 139 13 145 2.92e-34 127
Msa0820940 MtrunA17_Chr1g0167661 44.697 132 69 2 11 142 13 140 5.64e-34 123
Msa0820940 MtrunA17_Chr2g0327351 56.311 103 43 2 8 109 10 111 1.05e-33 124
Msa0820940 MtrunA17_Chr6g0452271 47.899 119 60 2 8 125 10 127 1.55e-33 124
Msa0820940 MtrunA17_Chr1g0152011 55.140 107 46 2 8 113 10 115 1.63e-33 124
Msa0820940 MtrunA17_Chr4g0032401 49.565 115 56 2 11 124 18 131 1.79e-33 124
Msa0820940 MtrunA17_Chr1g0203411 41.732 127 73 1 10 136 12 137 1.99e-33 123
Msa0820940 MtrunA17_Chr2g0328771 49.180 122 57 3 11 131 21 138 2.12e-33 123
Msa0820940 MtrunA17_Chr1g0193801 49.138 116 57 2 11 125 13 127 3.13e-33 124
Msa0820940 MtrunA17_Chr1g0211161 47.581 124 63 2 3 125 6 128 3.56e-33 120
Msa0820940 MtrunA17_Chr3g0110351 49.573 117 57 2 11 126 13 128 3.57e-33 122
Msa0820940 MtrunA17_Chr3g0117091 50.000 116 56 2 11 125 13 127 4.64e-33 123
Msa0820940 MtrunA17_Chr1g0194951 35.714 182 91 5 11 170 13 190 4.69e-33 124
Msa0820940 MtrunA17_Chr5g0400821 54.206 107 47 2 8 113 10 115 4.80e-33 122
Msa0820940 MtrunA17_Chr5g0435101 42.857 133 74 2 9 140 10 141 7.36e-33 119
Msa0820940 MtrunA17_Chr7g0228891 43.836 146 74 3 11 149 13 157 7.42e-33 121
Msa0820940 MtrunA17_Chr7g0217741 47.414 116 59 2 11 125 13 127 8.81e-33 121
Msa0820940 MtrunA17_Chr4g0022901 47.541 122 56 3 2 119 1 118 1.13e-32 120
Msa0820940 MtrunA17_Chr5g0434571 50.000 116 56 2 11 125 49 163 1.17e-32 122
Msa0820940 MtrunA17_Chr6g0453471 35.465 172 109 2 11 181 13 183 1.18e-32 122
Msa0820940 MtrunA17_Chr4g0028311 53.271 107 48 2 8 113 10 115 1.20e-32 121
Msa0820940 MtrunA17_Chr4g0054391 55.882 102 43 2 8 108 10 110 1.26e-32 120
Msa0820940 MtrunA17_Chr4g0022931 42.963 135 71 3 2 131 1 134 1.37e-32 120
Msa0820940 MtrunA17_Chr4g0058631 49.138 116 57 2 11 125 13 127 1.39e-32 122
Msa0820940 MtrunA17_Chr8g0342521 47.500 120 61 2 3 121 5 123 1.59e-32 122
Msa0820940 MtrunA17_Chr8g0349261 48.673 113 55 3 11 121 14 125 1.94e-32 120
Msa0820940 MtrunA17_Chr2g0330041 47.500 120 61 2 3 121 5 123 2.18e-32 122
Msa0820940 MtrunA17_Chr3g0135311 52.336 107 49 2 8 113 10 115 2.32e-32 121
Msa0820940 MtrunA17_Chr4g0042671 44.186 129 70 2 11 138 13 140 2.35e-32 122
Msa0820940 MtrunA17_Chr1g0194301 44.355 124 67 2 11 134 34 155 3.10e-32 119
Msa0820940 MtrunA17_Chr6g0453751 63.333 90 25 1 11 92 21 110 4.18e-32 115
Msa0820940 MtrunA17_Chr3g0088461 51.456 103 49 1 11 113 23 124 4.33e-32 120
Msa0820940 MtrunA17_Chr8g0342541 47.748 111 57 1 3 113 5 114 5.25e-32 120
Msa0820940 MtrunA17_Chr7g0271241 55.102 98 43 1 11 108 13 109 6.80e-32 120
Msa0820940 MtrunA17_Chr4g0044421 46.491 114 59 2 9 121 11 123 7.88e-32 116
Msa0820940 MtrunA17_Chr7g0264641 50.467 107 51 2 8 113 10 115 8.55e-32 118
Msa0820940 MtrunA17_Chr7g0261281 48.544 103 52 1 11 113 13 114 8.97e-32 118
Msa0820940 MtrunA17_Chr2g0323351 49.515 103 51 1 11 113 13 114 1.07e-31 117
Msa0820940 MtrunA17_Chr4g0068061 49.515 103 51 1 11 113 13 114 1.09e-31 119
Msa0820940 MtrunA17_Chr4g0072751 53.398 103 46 2 8 109 10 111 1.20e-31 119
Msa0820940 MtrunA17_Chr8g0343831 47.788 113 57 2 6 117 4 115 1.43e-31 117
Msa0820940 MtrunA17_Chr4g0057031 49.123 114 56 2 10 122 12 124 1.66e-31 117
Msa0820940 MtrunA17_Chr4g0022911 48.624 109 52 2 11 119 14 118 1.84e-31 117
Msa0820940 MtrunA17_Chr5g0397231 47.664 107 55 1 3 109 5 110 1.90e-31 119
Msa0820940 MtrunA17_Chr5g0417821 46.721 122 63 2 5 125 2 122 1.96e-31 117
Msa0820940 MtrunA17_Chr1g0193901 67.021 94 30 1 3 95 4 97 2.26e-31 112
Msa0820940 MtrunA17_Chr1g0193891 67.021 94 30 1 3 95 4 97 2.26e-31 112
Msa0820940 MtrunA17_Chr1g0193871 67.021 94 30 1 3 95 4 97 2.26e-31 112
Msa0820940 MtrunA17_Chr1g0193881 67.021 94 30 1 3 95 4 97 2.26e-31 112
Msa0820940 MtrunA17_Chr8g0387421 45.690 116 61 2 3 117 5 119 4.20e-31 117
Msa0820940 MtrunA17_Chr1g0180391 46.847 111 58 1 3 113 12 121 5.55e-31 115
Msa0820940 MtrunA17_Chr4g0022891 45.794 107 57 1 10 116 12 117 5.59e-31 115
Msa0820940 MtrunA17_Chr1g0186061 49.057 106 53 1 11 116 21 125 6.68e-31 115
Msa0820940 MtrunA17_Chr4g0060721 48.598 107 53 2 11 116 14 119 8.41e-31 117
Msa0820940 MtrunA17_Chr1g0194291 46.296 108 57 1 10 117 21 127 1.01e-30 115
Msa0820940 MtrunA17_Chr3g0121241 42.975 121 67 2 6 125 38 157 1.86e-30 115
Msa0820940 MtrunA17_Chr4g0055981 47.959 98 50 1 12 109 57 153 1.90e-30 113
Msa0820940 MtrunA17_Chr2g0293911 46.154 117 62 1 1 117 15 130 3.65e-30 115
Msa0820940 MtrunA17_Chr4g0068921 46.552 116 61 1 1 116 15 129 4.00e-30 111
Msa0820940 MtrunA17_Chr6g0453211 48.000 100 51 1 10 109 12 110 5.64e-30 114
Msa0820940 MtrunA17_Chr7g0217221 41.481 135 77 2 10 143 12 145 6.29e-30 113
Msa0820940 MtrunA17_Chr4g0013361 49.533 107 52 2 11 116 11 116 8.70e-30 113
Msa0820940 MtrunA17_Chr8g0346561 47.170 106 55 1 12 117 14 118 9.41e-30 113
Msa0820940 MtrunA17_Chr3g0092401 38.889 144 70 2 10 153 13 138 1.08e-29 113
Msa0820940 MtrunA17_Chr2g0311221 50.485 103 50 1 8 110 12 113 2.04e-29 113
Msa0820940 MtrunA17_Chr8g0334881 47.222 108 55 2 10 116 10 116 2.41e-29 112
Msa0820940 MtrunA17_Chr4g0070641 48.980 98 49 1 12 109 14 110 2.42e-29 108
Msa0820940 MtrunA17_Chr7g0254411 42.857 140 72 4 11 148 13 146 2.56e-29 113
Msa0820940 MtrunA17_Chr1g0203441 37.059 170 83 3 11 160 14 179 2.81e-29 111
Msa0820940 MtrunA17_Chr7g0275911 45.192 104 56 1 6 109 8 110 3.04e-29 111
Msa0820940 MtrunA17_Chr8g0342481 46.429 112 58 2 3 113 5 115 3.32e-29 114
Msa0820940 MtrunA17_Chr1g0168661 44.643 112 58 2 11 122 22 129 3.64e-29 110
Msa0820940 MtrunA17_Chr4g0070611 48.980 98 49 1 12 109 14 110 4.67e-29 112
Msa0820940 MtrunA17_Chr6g0487491 44.737 114 55 2 8 113 10 123 6.03e-29 110
Msa0820940 MtrunA17_Chr6g0470971 42.857 126 66 2 11 136 15 134 1.17e-28 110
Msa0820940 MtrunA17_Chr7g0269831 52.525 99 46 1 11 109 13 110 1.48e-28 111
Msa0820940 MtrunA17_Chr3g0099141 55.294 85 37 1 8 92 38 121 3.63e-28 105
Msa0820940 MtrunA17_Chr7g0240821 40.000 135 72 2 15 149 6 131 6.75e-28 107
Msa0820940 MtrunA17_Chr2g0327821 45.714 105 56 1 9 113 5 108 1.28e-27 106
Msa0820940 MtrunA17_Chr5g0434931 45.192 104 56 1 10 113 35 137 1.73e-27 107
Msa0820940 MtrunA17_Chr8g0360111 44.231 104 57 1 6 109 21 123 1.95e-27 106
Msa0820940 MtrunA17_Chr7g0220341 31.439 264 159 11 2 249 17 274 2.08e-27 106
Msa0820940 MtrunA17_Chr5g0434911 42.857 112 63 1 2 113 13 123 3.12e-27 106
Msa0820940 MtrunA17_Chr4g0030881 42.623 122 59 3 10 121 7 127 5.36e-27 105
Msa0820940 MtrunA17_Chr4g0008551 41.727 139 76 4 12 148 38 173 2.71e-26 105
Msa0820940 MtrunA17_Chr3g0133601 45.536 112 59 2 9 120 34 143 3.41e-26 102
Msa0820940 MtrunA17_Chr7g0247131 51.852 81 37 2 42 121 10 89 4.41e-26 103
Msa0820940 MtrunA17_Chr5g0434841 45.631 103 55 1 11 113 21 122 1.09e-25 103
Msa0820940 MtrunA17_Chr3g0117511 44.737 114 59 3 12 123 183 294 1.73e-25 104
Msa0820940 MtrunA17_Chr5g0401731 49.057 106 51 3 9 113 12 115 2.83e-25 102
Msa0820940 MtrunA17_Chr7g0228991 43.269 104 58 1 10 113 29 131 3.44e-25 100
Msa0820940 MtrunA17_Chr5g0434831 44.660 103 56 1 11 113 8 109 3.69e-25 98.6
Msa0820940 MtrunA17_Chr6g0454921 48.515 101 48 3 9 108 12 109 7.51e-25 98.6
Msa0820940 MtrunA17_Chr4g0058991 45.631 103 52 3 12 113 209 308 2.94e-24 100
Msa0820940 MtrunA17_Chr5g0429661 44.860 107 55 3 12 117 122 225 4.25e-24 99.4
Msa0820940 MtrunA17_Chr5g0437321 46.602 103 53 2 7 109 14 114 2.86e-23 95.9
Msa0820940 MtrunA17_Chr6g0480581 39.048 105 62 2 12 116 4 106 3.93e-23 94.7
Msa0820940 MtrunA17_Chr4g0053431 48.113 106 52 3 9 113 2 105 5.39e-23 95.1
Msa0820940 MtrunA17_Chr6g0460661 37.719 114 69 2 12 125 16 127 6.42e-23 92.0
Msa0820940 MtrunA17_Chr5g0397841 47.573 103 52 2 6 108 104 204 1.90e-22 95.9
Msa0820940 MtrunA17_Chr3g0125801 39.716 141 73 6 3 134 4 141 4.72e-22 92.8
Msa0820940 MtrunA17_Chr7g0228401 40.000 130 52 3 9 114 252 379 1.38e-21 93.6
Msa0820940 MtrunA17_Chr7g0228531 44.118 102 54 3 12 113 220 318 2.42e-21 92.4
Msa0820940 MtrunA17_Chr2g0323321 50.000 74 37 0 11 84 12 85 2.68e-21 86.3
Msa0820940 MtrunA17_Chr5g0395221 45.349 86 45 1 1 84 1 86 4.27e-21 85.1
Msa0820940 MtrunA17_Chr8g0342511 47.561 82 43 0 3 84 5 86 6.78e-21 84.7
Msa0820940 MtrunA17_Chr7g0238651 33.939 165 83 4 12 174 7 147 7.90e-21 90.5
Msa0820940 MtrunA17_Chr1g0157731 41.176 102 58 2 12 113 91 190 1.03e-20 91.7
Msa0820940 MtrunA17_Chr1g0157731 37.374 99 61 1 10 108 37 134 4.56e-15 75.1
Msa0820940 MtrunA17_Chr3g0139671 41.176 102 58 2 12 113 85 184 1.11e-20 91.3
Msa0820940 MtrunA17_Chr3g0139671 37.374 99 61 1 10 108 31 128 1.55e-15 76.3
Msa0820940 MtrunA17_Chr4g0042611 47.297 74 39 0 11 84 13 86 1.80e-20 83.2
Msa0820940 MtrunA17_Chr7g0228481 42.453 106 58 3 12 117 220 322 5.01e-20 89.0
Msa0820940 MtrunA17_Chr5g0417621 41.441 111 58 4 7 113 129 236 9.52e-20 88.2
Msa0820940 MtrunA17_Chr7g0238631 35.374 147 84 5 12 149 113 257 9.90e-20 88.6
Msa0820940 MtrunA17_Chr7g0238631 36.082 97 61 1 12 108 61 156 1.73e-13 70.1
Msa0820940 MtrunA17_Chr8g0342531 47.561 82 43 0 3 84 5 86 1.03e-19 83.6
Msa0820940 MtrunA17_Chr4g0042501 42.453 106 54 4 12 113 105 207 1.36e-19 87.4
Msa0820940 MtrunA17_Chr2g0294811 43.210 81 46 0 4 84 6 86 3.05e-19 80.9
Msa0820940 MtrunA17_Chr7g0233061 37.931 116 62 4 5 117 173 281 5.06e-19 85.5
Msa0820940 MtrunA17_Chr8g0342461 48.193 83 42 1 3 84 5 87 5.79e-19 80.9
Msa0820940 MtrunA17_Chr7g0254261 36.957 138 78 4 12 142 89 224 6.13e-19 85.1
Msa0820940 MtrunA17_Chr8g0342471 48.193 83 42 1 3 84 5 87 1.26e-18 80.1
Msa0820940 MtrunA17_Chr1g0177901 43.434 99 54 2 22 120 4 100 3.19e-18 80.9
Msa0820940 MtrunA17_Chr6g0460671 31.214 173 103 4 12 170 99 269 3.98e-18 82.8
Msa0820940 MtrunA17_Chr3g0093811 41.053 95 51 3 35 125 4 97 5.32e-16 75.9
Msa0820940 MtrunA17_Chr5g0434901 46.269 67 35 1 46 112 9 74 7.04e-16 72.0
Msa0820940 MtrunA17_Chr7g0229131 39.326 89 53 1 42 130 4 91 1.22e-15 72.8
Msa0820940 MtrunA17_Chr7g0229101 45.070 71 38 1 42 112 4 73 2.29e-15 72.8
Msa0820940 MtrunA17_Chr5g0416341 36.275 102 63 2 15 116 29 128 3.85e-14 71.6
Msa0820940 MtrunA17_Chr8g0362231 34.314 102 65 2 15 116 25 124 6.00e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820940 AT2G26960.1 47.468 158 71 3 12 158 22 178 7.90e-44 154
Msa0820940 AT2G32460.2 44.138 145 72 2 11 155 7 142 9.77e-41 146
Msa0820940 AT2G32460.1 44.138 145 72 2 11 155 19 154 1.04e-40 147
Msa0820940 AT5G55020.1 52.542 118 55 1 11 128 27 143 2.39e-40 146
Msa0820940 AT3G11440.2 44.099 161 82 3 11 165 42 200 2.20e-39 142
Msa0820940 AT3G11440.3 44.099 161 82 3 11 165 42 200 4.78e-39 143
Msa0820940 AT3G11440.4 44.099 161 82 3 11 165 42 200 4.78e-39 143
Msa0820940 AT3G11440.1 44.099 161 82 3 11 165 42 200 4.78e-39 143
Msa0820940 AT5G06100.1 52.586 116 54 1 11 126 33 147 6.08e-39 141
Msa0820940 AT5G06100.5 52.586 116 54 1 11 126 33 147 1.39e-38 141
Msa0820940 AT5G06100.2 52.586 116 54 1 11 126 33 147 1.39e-38 141
Msa0820940 AT5G06100.3 52.586 116 54 1 11 126 33 147 1.39e-38 141
Msa0820940 AT5G06100.4 52.586 116 54 1 11 126 33 147 1.39e-38 141
Msa0820940 AT5G56110.1 51.695 118 55 2 9 125 11 127 2.80e-38 137
Msa0820940 AT4G26930.1 46.617 133 66 2 11 143 20 147 3.81e-38 138
Msa0820940 AT4G38620.1 46.207 145 74 3 8 149 10 153 4.60e-37 132
Msa0820940 AT2G26950.1 51.304 115 55 1 12 126 18 131 8.92e-37 134
Msa0820940 AT4G09460.1 44.371 151 79 4 8 155 10 158 1.50e-36 130
Msa0820940 AT3G27810.1 35.751 193 116 4 6 194 16 204 3.05e-36 129
Msa0820940 AT3G12720.1 49.167 120 59 2 10 128 22 140 7.56e-36 130
Msa0820940 AT4G01680.3 46.715 137 69 3 11 144 13 148 9.57e-36 128
Msa0820940 AT1G35515.1 50.435 115 55 2 8 121 10 123 1.04e-35 127
Msa0820940 AT4G21440.1 52.679 112 51 2 11 121 13 123 1.28e-35 130
Msa0820940 AT5G40350.1 38.889 162 94 3 8 165 15 175 1.35e-35 127
Msa0820940 AT5G26660.1 50.407 123 59 2 11 132 13 134 1.94e-35 130
Msa0820940 AT5G54230.1 50.877 114 54 2 10 122 12 124 2.60e-35 129
Msa0820940 AT1G22640.1 46.970 132 68 2 8 138 10 140 3.44e-35 127
Msa0820940 AT3G61250.1 49.107 112 55 2 11 121 13 123 5.02e-35 127
Msa0820940 AT5G65230.1 48.438 128 64 2 4 130 6 132 5.97e-35 127
Msa0820940 AT1G57560.2 52.586 116 53 2 11 125 13 127 6.12e-35 127
Msa0820940 AT4G01680.1 46.715 137 69 3 11 144 13 148 6.48e-35 128
Msa0820940 AT1G57560.1 47.436 156 76 4 11 163 13 165 7.94e-35 127
Msa0820940 AT4G28110.1 51.754 114 53 2 10 122 12 124 8.33e-35 127
Msa0820940 AT1G09540.1 53.571 112 50 2 11 121 13 123 8.45e-35 129
Msa0820940 AT1G18570.1 49.138 116 57 2 11 125 14 128 9.30e-35 128
Msa0820940 AT5G10280.1 49.167 120 59 2 11 129 13 131 1.44e-34 127
Msa0820940 AT4G05100.1 53.097 113 51 2 11 122 14 125 1.97e-34 127
Msa0820940 AT5G16770.4 46.667 120 62 2 11 129 13 131 4.15e-34 125
Msa0820940 AT5G16770.3 46.667 120 62 2 11 129 13 131 4.15e-34 125
Msa0820940 AT3G49690.1 55.140 107 46 2 8 113 10 115 7.30e-34 125
Msa0820940 AT5G16770.1 46.667 120 62 2 11 129 13 131 7.36e-34 125
Msa0820940 AT5G16770.2 46.667 120 62 2 11 129 13 131 7.36e-34 125
Msa0820940 AT4G37780.1 51.786 112 50 3 10 118 12 122 1.57e-33 124
Msa0820940 AT3G23250.1 50.000 106 51 2 11 115 13 117 1.66e-33 123
Msa0820940 AT4G34990.1 43.151 146 79 3 10 154 12 154 1.74e-33 123
Msa0820940 AT5G15310.4 46.457 127 64 3 11 136 13 136 2.27e-33 122
Msa0820940 AT3G01140.2 43.382 136 74 3 8 142 10 143 2.33e-33 124
Msa0820940 AT2G16720.1 50.450 111 53 2 12 121 14 123 2.45e-33 122
Msa0820940 AT3G01140.1 43.382 136 74 3 8 142 53 186 2.47e-33 125
Msa0820940 AT1G74080.1 48.276 116 58 2 11 125 13 127 3.10e-33 124
Msa0820940 AT5G15310.1 46.457 127 64 3 11 136 13 136 5.39e-33 123
Msa0820940 AT5G15310.2 46.457 127 64 3 11 136 13 136 6.59e-33 122
Msa0820940 AT5G65790.1 55.140 107 46 2 8 113 10 115 7.47e-33 124
Msa0820940 AT3G27920.1 51.456 103 49 1 11 113 15 116 7.78e-33 120
Msa0820940 AT3G12820.1 36.574 216 119 7 8 216 12 216 9.09e-33 120
Msa0820940 AT5G12870.1 49.565 115 57 1 3 117 11 124 1.02e-32 121
Msa0820940 AT3G01530.1 51.456 103 49 1 8 110 23 124 1.04e-32 119
Msa0820940 AT3G02940.2 45.833 120 63 2 11 129 13 131 1.08e-32 122
Msa0820940 AT1G56160.1 50.962 104 50 1 10 113 14 116 1.13e-32 121
Msa0820940 AT5G14750.1 50.000 110 49 2 5 109 6 114 1.33e-32 119
Msa0820940 AT5G61420.2 46.552 116 60 2 11 125 13 127 1.44e-32 122
Msa0820940 AT4G17785.1 50.000 114 55 2 10 122 13 125 1.81e-32 122
Msa0820940 AT3G02940.1 45.833 120 63 2 11 129 13 131 1.91e-32 121
Msa0820940 AT3G02940.3 45.833 120 63 2 11 129 13 131 1.91e-32 121
Msa0820940 AT4G17785.2 50.000 114 55 2 10 122 13 125 1.97e-32 122
Msa0820940 AT5G57620.1 53.571 112 49 3 8 117 10 120 2.23e-32 121
Msa0820940 AT1G79180.1 42.759 145 76 3 10 148 14 157 2.86e-32 120
Msa0820940 AT3G13890.2 50.000 104 51 1 10 113 12 114 3.88e-32 121
Msa0820940 AT2G47190.1 47.706 109 56 1 8 116 18 125 4.21e-32 119
Msa0820940 AT3G08500.1 50.485 103 50 1 11 113 31 132 4.37e-32 121
Msa0820940 AT5G40330.1 48.544 103 52 1 11 113 13 114 4.61e-32 117
Msa0820940 AT1G74430.1 44.248 113 61 2 11 122 13 124 6.20e-32 119
Msa0820940 AT1G16490.1 50.000 104 51 1 10 113 14 116 6.22e-32 119
Msa0820940 AT5G07690.1 47.414 116 59 2 11 125 13 127 7.26e-32 120
Msa0820940 AT1G34670.1 49.558 113 55 2 11 122 13 124 7.88e-32 120
Msa0820940 AT5G16600.1 46.094 128 67 2 11 137 13 139 7.89e-32 120
Msa0820940 AT5G07700.1 46.552 116 60 2 11 125 13 127 8.10e-32 120
Msa0820940 AT5G07700.2 46.552 116 60 2 11 125 13 127 8.10e-32 120
Msa0820940 AT1G66230.1 48.276 116 58 2 11 125 13 127 1.04e-31 118
Msa0820940 AT3G28470.1 50.980 102 49 1 8 109 10 110 1.07e-31 119
Msa0820940 AT4G01680.2 42.953 149 69 4 11 144 13 160 1.17e-31 120
Msa0820940 AT1G68320.1 46.729 107 56 1 11 117 20 125 1.62e-31 118
Msa0820940 AT5G14340.1 41.791 134 74 3 11 143 25 155 1.68e-31 118
Msa0820940 AT1G48000.1 47.222 108 56 1 9 116 31 137 2.07e-31 117
Msa0820940 AT1G18710.1 42.982 114 63 2 11 123 13 125 2.18e-31 117
Msa0820940 AT5G60890.1 46.552 116 60 2 11 125 13 127 2.26e-31 118
Msa0820940 AT5G52600.1 44.118 136 65 3 10 135 12 146 2.31e-31 115
Msa0820940 AT3G13540.1 39.259 135 80 2 11 144 24 157 2.35e-31 117
Msa0820940 AT2G31180.1 44.348 115 63 1 10 124 12 125 2.40e-31 117
Msa0820940 AT1G06180.1 50.485 103 50 1 11 113 13 114 2.68e-31 116
Msa0820940 AT5G23000.1 53.333 105 47 2 10 113 12 115 2.77e-31 118
Msa0820940 AT1G25340.1 45.455 110 59 1 8 117 16 124 3.06e-31 117
Msa0820940 AT1G63910.1 47.826 115 58 2 3 116 5 118 3.75e-31 119
Msa0820940 AT2G36890.1 47.009 117 60 2 8 123 10 125 5.16e-31 117
Msa0820940 AT4G22680.1 41.176 153 87 3 10 160 12 163 8.05e-31 115
Msa0820940 AT5G62320.1 49.580 119 51 3 11 121 14 131 1.03e-30 115
Msa0820940 AT2G36890.2 47.009 117 60 2 8 123 51 166 1.17e-30 117
Msa0820940 AT1G74650.1 46.667 105 55 1 9 113 11 114 1.76e-30 116
Msa0820940 AT3G28910.1 49.074 108 53 2 10 116 12 118 3.01e-30 115
Msa0820940 AT1G08810.1 49.533 107 52 2 11 116 13 118 5.90e-30 114
Msa0820940 AT3G47600.1 48.148 108 54 2 10 116 12 118 6.32e-30 115
Msa0820940 AT4G13480.1 50.000 106 52 1 11 116 7 111 6.91e-30 113
Msa0820940 AT2G47460.1 49.524 105 51 2 11 114 13 116 8.81e-30 115
Msa0820940 AT3G60460.1 46.789 109 56 2 9 116 10 117 1.00e-29 114
Msa0820940 AT5G62470.2 48.148 108 54 2 10 116 12 118 1.46e-29 114
Msa0820940 AT3G62610.1 48.571 105 52 2 11 114 13 116 1.65e-29 114
Msa0820940 AT3G24310.1 48.113 106 54 1 11 116 19 123 1.86e-29 112
Msa0820940 AT5G59780.3 47.368 114 56 2 11 121 9 121 2.13e-29 111
Msa0820940 AT3G13890.1 44.167 120 57 2 3 113 5 123 3.06e-29 114
Msa0820940 AT3G30210.1 43.846 130 68 3 11 140 28 152 4.59e-29 111
Msa0820940 AT5G49330.1 47.475 99 51 1 11 109 13 110 4.69e-29 112
Msa0820940 AT3G46130.1 46.491 114 57 2 11 121 10 122 7.40e-29 110
Msa0820940 AT5G62470.1 48.148 108 53 3 10 116 12 117 2.62e-28 111
Msa0820940 AT3G53200.1 48.544 103 52 1 11 113 10 111 3.49e-28 108
Msa0820940 AT5G35550.1 43.243 111 62 1 3 113 7 116 3.84e-28 108
Msa0820940 AT4G12350.1 47.788 113 57 2 10 121 12 123 4.13e-28 109
Msa0820940 AT4G18770.1 50.000 102 49 2 12 113 217 316 1.46e-27 110
Msa0820940 AT3G06490.1 48.624 109 55 1 9 117 18 125 1.61e-27 108
Msa0820940 AT1G25340.2 42.727 110 57 2 8 117 16 119 5.07e-27 106
Msa0820940 AT1G79180.2 35.393 178 75 4 10 148 14 190 5.97e-27 107
Msa0820940 AT1G25340.3 44.340 106 53 2 8 113 16 115 6.75e-27 106
Msa0820940 AT5G49620.1 46.789 109 57 1 9 117 25 132 7.05e-27 106
Msa0820940 AT5G40360.1 48.544 103 51 2 12 114 158 258 1.30e-26 106
Msa0820940 AT1G56650.1 39.844 128 67 2 5 123 3 129 3.00e-26 103
Msa0820940 AT3G27785.1 43.363 113 62 2 5 117 182 292 5.72e-26 105
Msa0820940 AT4G25560.1 46.602 103 54 1 11 113 11 112 5.77e-26 103
Msa0820940 AT5G52260.1 47.788 113 55 2 11 123 13 121 8.86e-26 102
Msa0820940 AT5G26660.2 50.549 91 43 2 43 132 14 103 1.07e-25 103
Msa0820940 AT1G66380.1 44.762 105 57 1 5 109 3 106 2.78e-25 97.8
Msa0820940 AT5G58850.1 48.624 109 52 3 6 113 99 204 3.19e-25 103
Msa0820940 AT3G48920.1 43.519 108 60 1 6 113 14 120 3.37e-25 100
Msa0820940 AT3G50060.1 45.133 113 60 2 8 120 2 112 3.59e-25 101
Msa0820940 AT5G49620.2 42.623 122 57 1 9 117 25 146 3.69e-25 102
Msa0820940 AT1G66370.1 43.434 99 55 1 11 109 9 106 1.30e-24 99.0
Msa0820940 AT1G66390.1 43.119 109 61 1 5 113 3 110 2.81e-24 98.2
Msa0820940 AT5G67300.1 48.598 107 52 3 8 113 2 106 7.44e-24 98.2
Msa0820940 AT4G37260.1 46.364 110 56 3 12 120 13 120 1.17e-23 98.2
Msa0820940 AT5G40350.2 36.434 129 77 3 41 165 3 130 2.98e-23 93.6
Msa0820940 AT3G27810.2 33.333 156 96 4 43 194 4 155 3.21e-23 93.6
Msa0820940 AT5G11050.1 47.573 103 50 3 12 113 105 204 3.31e-23 98.2
Msa0820940 AT2G23290.1 45.536 112 58 3 3 113 4 113 3.62e-23 96.7
Msa0820940 AT2G25230.1 44.915 118 60 4 8 123 22 136 6.63e-23 94.4
Msa0820940 AT5G17800.1 39.007 141 78 4 2 136 80 218 9.23e-23 95.5
Msa0820940 AT3G55730.1 46.078 102 53 2 12 113 56 155 1.02e-22 96.7
Msa0820940 AT3G09230.1 43.810 105 57 2 9 113 52 154 1.28e-22 96.3
Msa0820940 AT1G17950.1 41.379 116 59 4 12 120 5 118 2.28e-22 93.2
Msa0820940 AT3G53200.2 56.338 71 30 1 43 113 9 78 3.28e-22 91.7
Msa0820940 AT1G69560.2 42.453 106 57 3 5 109 116 218 4.42e-22 94.0
Msa0820940 AT1G69560.1 40.952 105 60 2 5 109 100 202 4.96e-22 93.6
Msa0820940 AT2G39880.1 48.039 102 51 2 12 113 50 149 6.80e-22 94.0
Msa0820940 AT3G12820.2 35.754 179 97 7 45 216 1 168 1.66e-21 89.4
Msa0820940 AT4G33450.1 39.669 121 63 4 1 113 3 121 2.38e-21 90.5
Msa0820940 AT4G32730.5 44.118 102 55 2 12 113 87 186 2.78e-21 93.6
Msa0820940 AT4G32730.5 34.906 106 68 1 3 108 26 130 3.53e-15 75.5
Msa0820940 AT4G32730.4 44.118 102 55 2 12 113 87 186 2.78e-21 93.6
Msa0820940 AT4G32730.4 34.906 106 68 1 3 108 26 130 3.53e-15 75.5
Msa0820940 AT4G32730.3 44.118 102 55 2 12 113 87 186 2.78e-21 93.6
Msa0820940 AT4G32730.3 34.906 106 68 1 3 108 26 130 3.53e-15 75.5
Msa0820940 AT4G32730.2 44.118 102 55 2 12 113 87 186 2.78e-21 93.6
Msa0820940 AT4G32730.2 34.906 106 68 1 3 108 26 130 3.53e-15 75.5
Msa0820940 AT4G32730.1 41.880 117 65 3 12 127 87 201 3.05e-21 93.6
Msa0820940 AT4G32730.1 34.906 106 68 1 3 108 26 130 4.03e-15 75.5
Msa0820940 AT1G73410.2 35.758 165 93 6 12 166 6 167 3.83e-21 89.0
Msa0820940 AT3G46130.3 50.000 84 38 2 41 121 8 90 5.29e-21 89.0
Msa0820940 AT2G37630.1 41.600 125 69 3 12 134 4 126 1.11e-20 90.5
Msa0820940 AT1G73410.1 35.758 165 93 6 12 166 6 167 1.21e-20 88.2
Msa0820940 AT5G59780.2 51.220 82 36 2 43 121 20 100 1.23e-20 87.8
Msa0820940 AT3G46130.4 51.220 82 36 2 43 121 20 100 2.21e-20 87.4
Msa0820940 AT1G26780.1 42.424 99 53 3 12 109 98 193 5.30e-20 87.4
Msa0820940 AT5G14750.3 49.275 69 34 1 45 113 17 84 5.59e-20 84.7
Msa0820940 AT3G09370.2 40.952 105 60 2 9 113 132 234 6.30e-20 89.4
Msa0820940 AT3G09370.2 39.175 97 58 1 12 108 83 178 2.21e-15 75.9
Msa0820940 AT5G11510.3 40.196 102 59 2 12 113 81 180 6.65e-20 89.7
Msa0820940 AT5G11510.3 33.019 106 70 1 3 108 20 124 4.51e-14 72.4
Msa0820940 AT5G11510.1 40.196 102 59 2 12 113 81 180 6.65e-20 89.7
Msa0820940 AT5G11510.1 33.019 106 70 1 3 108 20 124 4.51e-14 72.4
Msa0820940 AT5G11510.4 40.196 102 59 2 12 113 81 180 6.65e-20 89.7
Msa0820940 AT5G11510.4 33.019 106 70 1 3 108 20 124 4.51e-14 72.4
Msa0820940 AT5G11510.2 40.196 102 59 2 12 113 81 180 6.95e-20 89.4
Msa0820940 AT5G11510.2 33.019 106 70 1 3 108 20 124 4.39e-14 72.4
Msa0820940 AT3G09370.3 40.952 105 60 2 9 113 140 242 7.11e-20 89.0
Msa0820940 AT3G09370.3 39.175 97 58 1 12 108 91 186 2.57e-15 75.9
Msa0820940 AT1G26780.2 40.952 105 57 3 12 113 98 200 7.24e-20 88.2
Msa0820940 AT3G09370.1 40.952 105 60 2 9 113 127 229 7.61e-20 89.0
Msa0820940 AT3G09370.1 39.175 97 58 1 12 108 78 173 2.53e-15 75.9
Msa0820940 AT5G11510.5 40.196 102 59 2 12 113 81 180 7.63e-20 89.4
Msa0820940 AT5G11510.5 33.019 106 70 1 3 108 20 124 4.64e-14 72.4
Msa0820940 AT5G02320.1 41.905 105 58 3 12 115 127 229 1.44e-19 88.2
Msa0820940 AT5G02320.1 38.144 97 59 1 12 108 75 170 1.16e-14 73.9
Msa0820940 AT5G02320.2 41.905 105 58 3 12 115 127 229 1.44e-19 88.2
Msa0820940 AT5G02320.2 38.144 97 59 1 12 108 75 170 1.16e-14 73.9
Msa0820940 AT5G02320.3 41.905 105 58 3 12 115 67 169 1.87e-19 87.8
Msa0820940 AT5G02320.3 38.144 97 59 1 12 108 15 110 1.34e-14 73.6
Msa0820940 AT5G40430.1 40.179 112 62 4 8 118 50 157 1.22e-18 83.2
Msa0820940 AT5G35550.2 50.704 71 34 1 43 113 50 119 1.60e-18 82.8
Msa0820940 AT3G29020.1 38.095 105 63 2 5 109 58 160 2.00e-18 82.0
Msa0820940 AT3G47600.2 49.333 75 36 2 43 116 39 112 2.44e-18 83.6
Msa0820940 AT3G29020.2 36.752 117 71 3 5 120 60 174 2.48e-18 83.2
Msa0820940 AT4G00540.2 40.909 110 59 4 11 116 102 209 6.41e-18 83.2
Msa0820940 AT4G00540.1 40.909 110 59 4 11 116 100 207 7.36e-18 83.2
Msa0820940 AT1G66380.2 47.761 67 35 0 6 72 4 70 2.01e-16 73.6
Msa0820940 AT1G66380.3 50.000 68 33 1 42 109 7 73 4.64e-16 72.4
Msa0820940 AT1G22640.3 43.373 83 45 2 57 138 2 83 9.92e-15 71.2
Msa0820940 AT3G18100.1 39.796 98 57 2 10 107 544 639 2.15e-14 73.2
Msa0820940 AT3G18100.3 39.796 98 57 2 10 107 496 591 2.26e-14 73.2
Msa0820940 AT3G18100.4 39.796 98 57 2 10 107 383 478 3.50e-14 72.4
Msa0820940 AT3G18100.2 39.796 98 57 2 10 107 331 426 3.63e-14 72.4
Msa0820940 AT1G18960.1 33.913 115 71 4 6 119 4 114 4.59e-14 71.2
Msa0820940 AT1G14350.2 35.294 102 64 2 15 116 28 127 9.89e-14 70.9
Msa0820940 AT1G14350.1 35.294 102 64 2 15 116 28 127 9.89e-14 70.9
Msa0820940 AT2G02820.2 34.314 102 65 2 15 116 33 132 5.52e-13 68.9
Msa0820940 AT2G02820.1 34.314 102 65 2 15 116 33 132 6.21e-13 68.6
Msa0820940 AT5G39700.1 36.364 99 61 2 11 109 55 151 7.70e-13 65.9
Msa0820940 AT2G02820.3 36.264 91 56 2 15 105 33 121 1.50e-12 67.0
Msa0820940 AT1G71030.2 35.354 99 60 3 49 146 5 100 5.85e-12 63.2
Msa0820940 AT1G71030.1 35.354 99 60 3 49 146 19 114 8.07e-12 63.2

Find 49 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATACCTCGTTCCAATTTC+TGG 0.107867 5_3:-58628257 None:intergenic
TAATATTTCATCTTCTTCTT+TGG 0.201233 5_3:-58628209 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5_3:+58628789 Msa0820940:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5_3:+58628336 Msa0820940:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5_3:+58629001 Msa0820940:CDS
TCAGTATCATGGTGAATTTA+TGG 0.290945 5_3:+58628893 Msa0820940:CDS
ATAATGACATCAAGAACTTT+TGG 0.308735 5_3:+58628580 Msa0820940:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.318952 5_3:-58628689 None:intergenic
AAAACCATGGAACCAGAAAT+TGG 0.371902 5_3:+58628245 Msa0820940:CDS
AAACCTCCTTGATGACTTCA+TGG 0.396227 5_3:+58628968 Msa0820940:CDS
ATGTCATTATCGCTTCTTCC+CGG 0.399929 5_3:-58628567 None:intergenic
CGTTCCAATTTCTGGTTCCA+TGG 0.417198 5_3:-58628249 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.417586 5_3:-58628648 None:intergenic
CTATAATTCAATTCATCATC+CGG 0.432697 5_3:-58628663 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5_3:+58628866 Msa0820940:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5_3:-58628846 None:intergenic
TGAAATATTAAAAGCATATG+TGG 0.459693 5_3:+58628222 Msa0820940:CDS
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5_3:-58628867 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5_3:+58628404 Msa0820940:CDS
TGGAACTTCTCATATACCTA+TGG 0.477216 5_3:+58628809 Msa0820940:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5_3:+58628837 Msa0820940:CDS
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5_3:+58628638 Msa0820940:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5_3:+58628305 Msa0820940:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5_3:+58629004 Msa0820940:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5_3:-58628643 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5_3:+58628644 Msa0820940:CDS
CAAATGGTCTAAGCTGGCTC+AGG 0.526373 5_3:+58628420 Msa0820940:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5_3:+58629020 Msa0820940:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5_3:-58628876 None:intergenic
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5_3:+58628414 Msa0820940:CDS
TTATAGTAGCCAACAAGTTG+AGG 0.552488 5_3:+58628680 Msa0820940:CDS
ATGGTCTAAGCTGGCTCAGG+AGG 0.563124 5_3:+58628423 Msa0820940:CDS
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5_3:-58628834 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5_3:+58628882 Msa0820940:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5_3:-58628882 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5_3:-58628825 None:intergenic
ATGGATCCATGAAGTCATCA+AGG 0.595005 5_3:-58628974 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5_3:-58628840 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5_3:-58628642 None:intergenic
AAAAGAAAACTTGAAAAGCG+TGG 0.617466 5_3:+58628612 Msa0820940:CDS
CTGAAGTCAATACATAGACA+TGG 0.618549 5_3:-58628993 None:intergenic
AAAGCATATGTGGAAAACCA+TGG 0.619332 5_3:+58628232 Msa0820940:CDS
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5_3:-58628647 None:intergenic
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5_3:+58629023 Msa0820940:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5_3:-58629039 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5_3:-58628879 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5_3:+58628283 Msa0820940:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5_3:-58628971 None:intergenic
TGGAACCAGAAATTGGAACG+AGG 0.771577 5_3:+58628252 Msa0820940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_3:58628732-58628751 None:intergenic 15.0%
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_3:58628732-58628751 None:intergenic 15.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_3:58628212-58628231 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_3:58628222-58628241 Msa0820940:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_3:58628391-58628410 Msa0820940:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_3:58628756-58628775 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_3:58628775-58628794 Msa0820940:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_3:58628776-58628795 Msa0820940:CDS 20.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_3:58628212-58628231 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_3:58628222-58628241 Msa0820940:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_3:58628391-58628410 Msa0820940:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_3:58628756-58628775 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_3:58628775-58628794 Msa0820940:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_3:58628776-58628795 Msa0820940:CDS 20.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG - chr5_3:58628188-58628207 None:intergenic 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_3:58628364-58628383 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_3:58628404-58628423 Msa0820940:CDS 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_3:58628505-58628524 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_3:58628580-58628599 Msa0820940:CDS 25.0%
! CTATAATTCAATTCATCATC+CGG - chr5_3:58628666-58628685 None:intergenic 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_3:58628777-58628796 Msa0820940:CDS 25.0%
!! AATTTATGGATCCAGATTTT+TGG + chr5_3:58628907-58628926 Msa0820940:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_3:58629001-58629020 Msa0820940:CDS 25.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG - chr5_3:58628188-58628207 None:intergenic 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_3:58628364-58628383 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_3:58628404-58628423 Msa0820940:CDS 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_3:58628505-58628524 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_3:58628580-58628599 Msa0820940:CDS 25.0%
! CTATAATTCAATTCATCATC+CGG - chr5_3:58628666-58628685 None:intergenic 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_3:58628777-58628796 Msa0820940:CDS 25.0%
!! AATTTATGGATCCAGATTTT+TGG + chr5_3:58628907-58628926 Msa0820940:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_3:58629001-58629020 Msa0820940:CDS 25.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG - chr5_3:58628185-58628204 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG + chr5_3:58628185-58628204 Msa0820940:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_3:58628489-58628508 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_3:58628612-58628631 Msa0820940:CDS 30.0%
TCAGTATCATGGTGAATTTA+TGG + chr5_3:58628893-58628912 Msa0820940:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_3:58629004-58629023 Msa0820940:CDS 30.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG - chr5_3:58628185-58628204 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG + chr5_3:58628185-58628204 Msa0820940:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_3:58628489-58628508 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_3:58628612-58628631 Msa0820940:CDS 30.0%
TCAGTATCATGGTGAATTTA+TGG + chr5_3:58628893-58628912 Msa0820940:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_3:58629004-58629023 Msa0820940:CDS 30.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_3:58628232-58628251 Msa0820940:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG + chr5_3:58628245-58628264 Msa0820940:CDS 35.0%
! GAACGAGGTATCAAAAAATG+CGG + chr5_3:58628267-58628286 Msa0820940:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_3:58628268-58628287 Msa0820940:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_3:58628305-58628324 Msa0820940:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_3:58628337-58628356 Msa0820940:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_3:58628414-58628433 Msa0820940:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_3:58628548-58628567 Msa0820940:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_3:58628549-58628568 Msa0820940:intron 35.0%
TTATAGTAGCCAACAAGTTG+AGG + chr5_3:58628680-58628699 Msa0820940:CDS 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_3:58628809-58628828 Msa0820940:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_3:58628921-58628940 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_3:58628996-58629015 None:intergenic 35.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_3:58628232-58628251 Msa0820940:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG + chr5_3:58628245-58628264 Msa0820940:CDS 35.0%
! GAACGAGGTATCAAAAAATG+CGG + chr5_3:58628267-58628286 Msa0820940:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_3:58628268-58628287 Msa0820940:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_3:58628305-58628324 Msa0820940:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_3:58628337-58628356 Msa0820940:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_3:58628414-58628433 Msa0820940:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_3:58628548-58628567 Msa0820940:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_3:58628549-58628568 Msa0820940:intron 35.0%
TTATAGTAGCCAACAAGTTG+AGG + chr5_3:58628680-58628699 Msa0820940:CDS 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_3:58628809-58628828 Msa0820940:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_3:58628921-58628940 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_3:58628996-58629015 None:intergenic 35.0%
TCATCCGCCGATACTAAAAA+AGG + chr5_3:58628178-58628197 Msa0820940:CDS 40.0%
TGATACCTCGTTCCAATTTC+TGG - chr5_3:58628260-58628279 None:intergenic 40.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_3:58628269-58628288 Msa0820940:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_3:58628339-58628358 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_3:58628336-58628355 Msa0820940:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_3:58628346-58628365 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG - chr5_3:58628570-58628589 None:intergenic 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_3:58628692-58628711 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_3:58628789-58628808 Msa0820940:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_3:58628968-58628987 Msa0820940:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_3:58628977-58628996 None:intergenic 40.0%
TCATCCGCCGATACTAAAAA+AGG + chr5_3:58628178-58628197 Msa0820940:CDS 40.0%
TGATACCTCGTTCCAATTTC+TGG - chr5_3:58628260-58628279 None:intergenic 40.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_3:58628269-58628288 Msa0820940:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_3:58628339-58628358 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_3:58628336-58628355 Msa0820940:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_3:58628346-58628365 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG - chr5_3:58628570-58628589 None:intergenic 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_3:58628692-58628711 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_3:58628789-58628808 Msa0820940:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_3:58628968-58628987 Msa0820940:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_3:58628977-58628996 None:intergenic 40.0%
!! CGTTCCAATTTCTGGTTCCA+TGG - chr5_3:58628252-58628271 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG + chr5_3:58628252-58628271 Msa0820940:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_3:58628837-58628856 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_3:58628837-58628856 Msa0820940:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_3:58628843-58628862 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_3:58628849-58628868 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_3:58628866-58628885 Msa0820940:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_3:58628870-58628889 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_3:58628882-58628901 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_3:58628885-58628904 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_3:58628882-58628901 Msa0820940:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_3:58628974-58628993 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_3:58629042-58629061 None:intergenic 45.0%
!! CGTTCCAATTTCTGGTTCCA+TGG - chr5_3:58628252-58628271 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG + chr5_3:58628252-58628271 Msa0820940:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_3:58628837-58628856 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_3:58628837-58628856 Msa0820940:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_3:58628843-58628862 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_3:58628849-58628868 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_3:58628866-58628885 Msa0820940:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_3:58628870-58628889 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_3:58628882-58628901 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_3:58628885-58628904 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_3:58628882-58628901 Msa0820940:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_3:58628974-58628993 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_3:58629042-58629061 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_3:58628283-58628302 Msa0820940:CDS 50.0%
! CAAATGGTCTAAGCTGGCTC+AGG + chr5_3:58628420-58628439 Msa0820940:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_3:58628645-58628664 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_3:58628644-58628663 Msa0820940:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_3:58628650-58628669 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_3:58628651-58628670 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_3:58628879-58628898 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_3:58629020-58629039 Msa0820940:CDS 50.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_3:58628283-58628302 Msa0820940:CDS 50.0%
! CAAATGGTCTAAGCTGGCTC+AGG + chr5_3:58628420-58628439 Msa0820940:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_3:58628645-58628664 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_3:58628644-58628663 Msa0820940:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_3:58628650-58628669 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_3:58628651-58628670 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_3:58628879-58628898 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_3:58629020-58629039 Msa0820940:CDS 50.0%
! ATGGTCTAAGCTGGCTCAGG+AGG + chr5_3:58628423-58628442 Msa0820940:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_3:58628638-58628657 Msa0820940:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_3:58628646-58628665 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_3:58628828-58628847 None:intergenic 55.0%
! ATGGTCTAAGCTGGCTCAGG+AGG + chr5_3:58628423-58628442 Msa0820940:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_3:58628638-58628657 Msa0820940:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_3:58628646-58628665 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_3:58628828-58628847 None:intergenic 55.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_3:58629023-58629042 Msa0820940:CDS 60.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_3:58629023-58629042 Msa0820940:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 58628163 58629082 58628163 ID=Msa0820940;Name=Msa0820940
chr5_3 mRNA 58628163 58629082 58628163 ID=Msa0820940-mRNA-1;Parent=Msa0820940;Name=Msa0820940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|266
chr5_3 exon 58628163 58628444 58628163 ID=Msa0820940-mRNA-1:exon:17810;Parent=Msa0820940-mRNA-1
chr5_3 exon 58628564 58629082 58628564 ID=Msa0820940-mRNA-1:exon:17811;Parent=Msa0820940-mRNA-1
chr5_3 CDS 58628163 58628444 58628163 ID=Msa0820940-mRNA-1:cds;Parent=Msa0820940-mRNA-1
chr5_3 CDS 58628564 58629082 58628564 ID=Msa0820940-mRNA-1:cds;Parent=Msa0820940-mRNA-1
Gene Sequence

>Msa0820940

ATGATGTCTTCATCATCATCCGCCGATACTAAAAAAGGAAAATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACCAGAAATTGGAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAAGAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCAGGAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAATTGAATTATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGAATTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>Msa0820940

MMSSSSSADTKKGKWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKRKVFEFYKKYGEFKWSKLAQELPGRSDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNYSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGEFMDPDFWLHNSSLDNDDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI*