Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820950 | AES92029.1 | 80.311 | 193 | 17 | 2 | 29 | 200 | 31 | 223 | 3.36e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820950 | G7JQ00 | 80.311 | 193 | 17 | 2 | 29 | 200 | 31 | 223 | 1.60e-107 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0820950 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820950 | MtrunA17_Chr5g0393501 | 32.308 | 195 | 108 | 4 | 29 | 199 | 45 | 239 | 8.37e-28 | 105 |
| Msa0820950 | MtrunA17_Chr4g0044671 | 27.222 | 180 | 110 | 2 | 29 | 187 | 28 | 207 | 4.26e-14 | 68.2 |
| Msa0820950 | MtrunA17_Chr4g0034781 | 26.667 | 180 | 111 | 2 | 29 | 187 | 22 | 201 | 1.53e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGCGATTTCCAATT+TGG | 0.147900 | 5_3:-58642433 | Msa0820950:CDS |
| GGGTAAGGGGTTTGCGATTT+GGG | 0.160938 | 5_3:-58642475 | Msa0820950:CDS |
| TCTCCTCCTCTTCCCCAAAT+TGG | 0.218227 | 5_3:+58642419 | None:intergenic |
| TGGGTAAGGGGTTTGCGATT+TGG | 0.259010 | 5_3:-58642476 | Msa0820950:CDS |
| AGATTTGCGATTTCCAATTT+GGG | 0.327058 | 5_3:-58642432 | Msa0820950:CDS |
| CAAATTGGAAATCGCAAATC+TGG | 0.332402 | 5_3:+58642434 | None:intergenic |
| AGGAATTTGCCGAAAGTATC+AGG | 0.335653 | 5_3:+58640278 | None:intergenic |
| AATCGTGATGTTTCACTCTA+AGG | 0.341127 | 5_3:+58640258 | None:intergenic |
| TAGGAACTACCTGATACTTT+CGG | 0.400617 | 5_3:-58640287 | Msa0820950:CDS |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 5_3:+58640172 | None:intergenic |
| ATCTACTTCCACCAAGGTAC+TGG | 0.428620 | 5_3:+58640539 | None:intergenic |
| CGATTTCCAATTTGGGGAAG+AGG | 0.437138 | 5_3:-58642425 | Msa0820950:CDS |
| GGGTTTGCGATTTGGGGAAG+AGG | 0.446038 | 5_3:-58642468 | Msa0820950:CDS |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 5_3:+58640173 | None:intergenic |
| GAGCAATGGCACTTGCTAGA+TGG | 0.455163 | 5_3:-58640679 | Msa0820950:CDS |
| TGCCGCACTCATGGAATGAT+AGG | 0.462626 | 5_3:+58640468 | None:intergenic |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 5_3:-58640132 | Msa0820950:CDS |
| TATGTTCCAGAATTTGGGTA+AGG | 0.469282 | 5_3:-58642490 | None:intergenic |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 5_3:-58640167 | Msa0820950:CDS |
| TAAATATTTGTACGAGCTAC+CGG | 0.476243 | 5_3:-58640701 | Msa0820950:CDS |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 5_3:-58640173 | Msa0820950:CDS |
| ACACGATGCTGCCGCACTCA+TGG | 0.487735 | 5_3:+58640459 | None:intergenic |
| TTTGCGATTTGGGGAAGAGG+TGG | 0.493792 | 5_3:-58642465 | Msa0820950:CDS |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 5_3:-58640131 | Msa0820950:CDS |
| ATTATTGCTTTCCAGTACCT+TGG | 0.503165 | 5_3:-58640550 | Msa0820950:CDS |
| TGTTCCAGAATTTGGGTAAG+GGG | 0.521801 | 5_3:-58642488 | None:intergenic |
| ACGGAAATGATATTGTCATA+AGG | 0.522697 | 5_3:+58640218 | None:intergenic |
| GGTAAGGGGTTTGCGATTTG+GGG | 0.534352 | 5_3:-58642474 | Msa0820950:CDS |
| TCTAGCAAGTGCCATTGCTC+CGG | 0.534587 | 5_3:+58640682 | None:intergenic |
| GATTTGCGATTTCCAATTTG+GGG | 0.537951 | 5_3:-58642431 | Msa0820950:CDS |
| TGATAGGGTGGATAATCAGC+TGG | 0.541144 | 5_3:+58640484 | None:intergenic |
| ATGTTCCAGAATTTGGGTAA+GGG | 0.545563 | 5_3:-58642489 | None:intergenic |
| AGTCAGCCGTTGTTGACAGA+TGG | 0.548377 | 5_3:-58640616 | Msa0820950:CDS |
| ATTGCTTTCCAGTACCTTGG+TGG | 0.549152 | 5_3:-58640547 | Msa0820950:CDS |
| AGCCGTTGTTGACAGATGGT+TGG | 0.550734 | 5_3:-58640612 | Msa0820950:CDS |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 5_3:+58640174 | None:intergenic |
| TTTCAAGTGCAAGTGCGTCA+TGG | 0.567746 | 5_3:-58640093 | Msa0820950:CDS |
| TTTCCAATTTGGGGAAGAGG+AGG | 0.577832 | 5_3:-58642422 | Msa0820950:CDS |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 5_3:+58640124 | None:intergenic |
| ATTTGGGGAAGAGGAGGAGA+AGG | 0.584196 | 5_3:-58642416 | Msa0820950:intron |
| GTCTGTATATTTGAGTCTCA+CGG | 0.587084 | 5_3:+58640199 | None:intergenic |
| TGGCACTTGCTAGATGGTGA+TGG | 0.587936 | 5_3:-58640673 | Msa0820950:CDS |
| ATTTGGGGAAGAGGTGGAGA+AGG | 0.588798 | 5_3:-58642459 | Msa0820950:CDS |
| TATCCAGATAGGAACTTCAA+AGG | 0.596572 | 5_3:+58640429 | None:intergenic |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 5_3:-58640163 | Msa0820950:CDS |
| GGCACTTGCTAGATGGTGAT+GGG | 0.608333 | 5_3:-58640672 | Msa0820950:CDS |
| TGTACGAGCTACCGGAGCAA+TGG | 0.612121 | 5_3:-58640693 | Msa0820950:CDS |
| GCCGCACTCATGGAATGATA+GGG | 0.629158 | 5_3:+58640469 | None:intergenic |
| ACCCTATCATTCCATGAGTG+CGG | 0.640367 | 5_3:-58640470 | Msa0820950:CDS |
| GCACTCATGGAATGATAGGG+TGG | 0.649652 | 5_3:+58640472 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 5_3:+58640533 | None:intergenic |
| CTCCAACCATCTGTCAACAA+CGG | 0.713268 | 5_3:+58640610 | None:intergenic |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 5_3:-58640128 | Msa0820950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATCTTTTTTTAGTTA+AGG | - | chr5_3:58640388-58640407 | Msa0820950:intron | 10.0% |
| !!! | AATAATCTTTTTTTAGTTAA+GGG | - | chr5_3:58640389-58640408 | Msa0820950:intron | 10.0% |
| !!! | AAATAATCTTTTTTTAGTTA+AGG | - | chr5_3:58640388-58640407 | Msa0820950:intron | 10.0% |
| !!! | AATAATCTTTTTTTAGTTAA+GGG | - | chr5_3:58640389-58640408 | Msa0820950:intron | 10.0% |
| !!! | AAAAAACTTAAATGTTCTTT+TGG | - | chr5_3:58640207-58640226 | Msa0820950:CDS | 15.0% |
| !! | AAAATTCAAAAAAAACGTTA+GGG | + | chr5_3:58640309-58640328 | None:intergenic | 15.0% |
| !! | AAAAATTCAAAAAAAACGTT+AGG | + | chr5_3:58640310-58640329 | None:intergenic | 15.0% |
| !! | TAATACCAAAAATATAGTTA+AGG | - | chr5_3:58640419-58640438 | Msa0820950:intron | 15.0% |
| !! | AATACCAAAAATATAGTTAA+GGG | - | chr5_3:58640420-58640439 | Msa0820950:intron | 15.0% |
| !!! | TAAAATTCAATAATTTGTCT+AGG | - | chr5_3:58640738-58640757 | Msa0820950:intron | 15.0% |
| !!! | TAGTTCTTTTTTTTTTTTTG+AGG | - | chr5_3:58640817-58640836 | Msa0820950:intron | 15.0% |
| !! | TATATATGCTATGAAAAATA+GGG | + | chr5_3:58640994-58641013 | None:intergenic | 15.0% |
| !! | ATATATATGCTATGAAAAAT+AGG | + | chr5_3:58640995-58641014 | None:intergenic | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | - | chr5_3:58642202-58642221 | Msa0820950:intron | 15.0% |
| !!! | CAGATTTTTTTCTTTTTTTT+AGG | - | chr5_3:58642243-58642262 | Msa0820950:intron | 15.0% |
| !!! | AAAAAACTTAAATGTTCTTT+TGG | - | chr5_3:58640207-58640226 | Msa0820950:CDS | 15.0% |
| !! | AAAATTCAAAAAAAACGTTA+GGG | + | chr5_3:58640309-58640328 | None:intergenic | 15.0% |
| !! | AAAAATTCAAAAAAAACGTT+AGG | + | chr5_3:58640310-58640329 | None:intergenic | 15.0% |
| !! | TAATACCAAAAATATAGTTA+AGG | - | chr5_3:58640419-58640438 | Msa0820950:intron | 15.0% |
| !! | AATACCAAAAATATAGTTAA+GGG | - | chr5_3:58640420-58640439 | Msa0820950:intron | 15.0% |
| !!! | TAAAATTCAATAATTTGTCT+AGG | - | chr5_3:58640738-58640757 | Msa0820950:intron | 15.0% |
| !!! | TAGTTCTTTTTTTTTTTTTG+AGG | - | chr5_3:58640817-58640836 | Msa0820950:intron | 15.0% |
| !! | TATATATGCTATGAAAAATA+GGG | + | chr5_3:58640994-58641013 | None:intergenic | 15.0% |
| !! | ATATATATGCTATGAAAAAT+AGG | + | chr5_3:58640995-58641014 | None:intergenic | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | - | chr5_3:58642202-58642221 | Msa0820950:intron | 15.0% |
| !!! | CAGATTTTTTTCTTTTTTTT+AGG | - | chr5_3:58642243-58642262 | Msa0820950:intron | 15.0% |
| !! | GATACCAAATAAATACTTAA+GGG | + | chr5_3:58640234-58640253 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | - | chr5_3:58640328-58640347 | Msa0820950:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | - | chr5_3:58640329-58640348 | Msa0820950:intron | 20.0% |
| !!! | CTATATTTTTGGTATTACTT+TGG | + | chr5_3:58640416-58640435 | None:intergenic | 20.0% |
| !! | TAATTACACTCATTCAATTT+AGG | + | chr5_3:58640464-58640483 | None:intergenic | 20.0% |
| !!! | TGATAATCAAAGCTATATTT+TGG | - | chr5_3:58640544-58640563 | Msa0820950:CDS | 20.0% |
| !!! | ATATTTTGAAGTTTGTGAAA+AGG | - | chr5_3:58640627-58640646 | Msa0820950:CDS | 20.0% |
| !!! | GACAAATTATTGAATTTTAG+TGG | + | chr5_3:58640737-58640756 | None:intergenic | 20.0% |
| !! | ATTCTAGTCATATAAATCAT+TGG | - | chr5_3:58641085-58641104 | Msa0820950:intron | 20.0% |
| !! | TTCTAGTCATATAAATCATT+GGG | - | chr5_3:58641086-58641105 | Msa0820950:intron | 20.0% |
| !!! | GCTTTTATAATAAAGGATAA+GGG | + | chr5_3:58641131-58641150 | None:intergenic | 20.0% |
| !!! | AGCTTTTATAATAAAGGATA+AGG | + | chr5_3:58641132-58641151 | None:intergenic | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | + | chr5_3:58641138-58641157 | None:intergenic | 20.0% |
| !! | ATATCAAATGCAATTAAAGT+CGG | - | chr5_3:58641346-58641365 | Msa0820950:intron | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | + | chr5_3:58641593-58641612 | None:intergenic | 20.0% |
| !! | TTTCTATTTAAATACGATGA+AGG | - | chr5_3:58641674-58641693 | Msa0820950:intron | 20.0% |
| !! | TTCTATTTAAATACGATGAA+GGG | - | chr5_3:58641675-58641694 | Msa0820950:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+AGG | + | chr5_3:58641790-58641809 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | + | chr5_3:58642162-58642181 | None:intergenic | 20.0% |
| !! | GATACCAAATAAATACTTAA+GGG | + | chr5_3:58640234-58640253 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | - | chr5_3:58640328-58640347 | Msa0820950:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | - | chr5_3:58640329-58640348 | Msa0820950:intron | 20.0% |
| !!! | CTATATTTTTGGTATTACTT+TGG | + | chr5_3:58640416-58640435 | None:intergenic | 20.0% |
| !! | TAATTACACTCATTCAATTT+AGG | + | chr5_3:58640464-58640483 | None:intergenic | 20.0% |
| !!! | TGATAATCAAAGCTATATTT+TGG | - | chr5_3:58640544-58640563 | Msa0820950:CDS | 20.0% |
| !!! | ATATTTTGAAGTTTGTGAAA+AGG | - | chr5_3:58640627-58640646 | Msa0820950:CDS | 20.0% |
| !!! | GACAAATTATTGAATTTTAG+TGG | + | chr5_3:58640737-58640756 | None:intergenic | 20.0% |
| !! | ATTCTAGTCATATAAATCAT+TGG | - | chr5_3:58641085-58641104 | Msa0820950:intron | 20.0% |
| !! | TTCTAGTCATATAAATCATT+GGG | - | chr5_3:58641086-58641105 | Msa0820950:intron | 20.0% |
| !!! | GCTTTTATAATAAAGGATAA+GGG | + | chr5_3:58641131-58641150 | None:intergenic | 20.0% |
| !!! | AGCTTTTATAATAAAGGATA+AGG | + | chr5_3:58641132-58641151 | None:intergenic | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | + | chr5_3:58641138-58641157 | None:intergenic | 20.0% |
| !! | ATATCAAATGCAATTAAAGT+CGG | - | chr5_3:58641346-58641365 | Msa0820950:intron | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | + | chr5_3:58641593-58641612 | None:intergenic | 20.0% |
| !! | TTTCTATTTAAATACGATGA+AGG | - | chr5_3:58641674-58641693 | Msa0820950:intron | 20.0% |
| !! | TTCTATTTAAATACGATGAA+GGG | - | chr5_3:58641675-58641694 | Msa0820950:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+AGG | + | chr5_3:58641790-58641809 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | + | chr5_3:58642162-58642181 | None:intergenic | 20.0% |
| ! | CGATACCAAATAAATACTTA+AGG | + | chr5_3:58640235-58640254 | None:intergenic | 25.0% |
| !! | GTATTTATTTGGTATCGTTT+TGG | - | chr5_3:58640238-58640257 | Msa0820950:CDS | 25.0% |
| ! | TTGAATGAGTGTAATTATAG+AGG | - | chr5_3:58640467-58640486 | Msa0820950:CDS | 25.0% |
| !! | AGCAAATATTAGTCTCATTA+GGG | + | chr5_3:58640927-58640946 | None:intergenic | 25.0% |
| ! | TAATATTTGCTCAAGTACTT+CGG | - | chr5_3:58640936-58640955 | Msa0820950:intron | 25.0% |
| ! | TCATATAAATCATTGGGAAT+AGG | - | chr5_3:58641092-58641111 | Msa0820950:intron | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | + | chr5_3:58641223-58641242 | None:intergenic | 25.0% |
| ! | TTTGATTAGCAATTAGTGTA+GGG | + | chr5_3:58641381-58641400 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGCAATTAGTGT+AGG | + | chr5_3:58641382-58641401 | None:intergenic | 25.0% |
| !! | ATGTGCATGAAAATAACTTT+TGG | - | chr5_3:58641714-58641733 | Msa0820950:intron | 25.0% |
| !! | TTTTGATGCTATTCATTTAG+AGG | - | chr5_3:58642180-58642199 | Msa0820950:intron | 25.0% |
| ! | CGATACCAAATAAATACTTA+AGG | + | chr5_3:58640235-58640254 | None:intergenic | 25.0% |
| !! | GTATTTATTTGGTATCGTTT+TGG | - | chr5_3:58640238-58640257 | Msa0820950:CDS | 25.0% |
| ! | TTGAATGAGTGTAATTATAG+AGG | - | chr5_3:58640467-58640486 | Msa0820950:CDS | 25.0% |
| !! | AGCAAATATTAGTCTCATTA+GGG | + | chr5_3:58640927-58640946 | None:intergenic | 25.0% |
| ! | TAATATTTGCTCAAGTACTT+CGG | - | chr5_3:58640936-58640955 | Msa0820950:intron | 25.0% |
| ! | TCATATAAATCATTGGGAAT+AGG | - | chr5_3:58641092-58641111 | Msa0820950:intron | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | + | chr5_3:58641223-58641242 | None:intergenic | 25.0% |
| ! | TTTGATTAGCAATTAGTGTA+GGG | + | chr5_3:58641381-58641400 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGCAATTAGTGT+AGG | + | chr5_3:58641382-58641401 | None:intergenic | 25.0% |
| !! | ATGTGCATGAAAATAACTTT+TGG | - | chr5_3:58641714-58641733 | Msa0820950:intron | 25.0% |
| !! | TTTTGATGCTATTCATTTAG+AGG | - | chr5_3:58642180-58642199 | Msa0820950:intron | 25.0% |
| AGATTTGCGATTTCCAATTT+GGG | - | chr5_3:58640117-58640136 | Msa0820950:CDS | 30.0% | |
| TGGTCCCTTAAGTATTTATT+TGG | - | chr5_3:58640227-58640246 | Msa0820950:CDS | 30.0% | |
| ! | TGGTCCCTTAACTATATTTT+TGG | + | chr5_3:58640427-58640446 | None:intergenic | 30.0% |
| ! | TTTAGGCTTAAATGCGTTTT+TGG | + | chr5_3:58640447-58640466 | None:intergenic | 30.0% |
| ATTTCTCTTTCCTCTTACTT+CGG | + | chr5_3:58640518-58640537 | None:intergenic | 30.0% | |
| !!! | AGCTATATTTTGGTGCAAAA+TGG | - | chr5_3:58640554-58640573 | Msa0820950:CDS | 30.0% |
| AGAAAATCTAGAGAGTCATA+GGG | + | chr5_3:58640879-58640898 | None:intergenic | 30.0% | |
| ! | AATATTAGTCTCATTAGGGA+GGG | + | chr5_3:58640923-58640942 | None:intergenic | 30.0% |
| ! | AAATATTAGTCTCATTAGGG+AGG | + | chr5_3:58640924-58640943 | None:intergenic | 30.0% |
| ! | GAGCAAATATTAGTCTCATT+AGG | + | chr5_3:58640928-58640947 | None:intergenic | 30.0% |
| TATGCTATGAAAAATAGGGA+TGG | + | chr5_3:58640990-58641009 | None:intergenic | 30.0% | |
| AATCATTGGGAATAGGAAAA+TGG | - | chr5_3:58641099-58641118 | Msa0820950:intron | 30.0% | |
| ! | TTATAAAAGCTAGACTTGCT+TGG | - | chr5_3:58641141-58641160 | Msa0820950:intron | 30.0% |
| TCATTAGTACATGTTTAGGA+GGG | + | chr5_3:58641219-58641238 | None:intergenic | 30.0% | |
| !! | ATTGTTAGGCTTTGAATCAA+CGG | + | chr5_3:58641290-58641309 | None:intergenic | 30.0% |
| !! | TATTATGAGAGAGCATTGTT+AGG | + | chr5_3:58641304-58641323 | None:intergenic | 30.0% |
| TTGATTAGCAATTAGTGTAG+GGG | + | chr5_3:58641380-58641399 | None:intergenic | 30.0% | |
| !!! | GTACGAAGAACACTTTTTTA+AGG | + | chr5_3:58641474-58641493 | None:intergenic | 30.0% |
| ATCTTCCTATCACTCTATTT+CGG | + | chr5_3:58641546-58641565 | None:intergenic | 30.0% | |
| ATAGGAAGATATGCGTTTAA+AGG | - | chr5_3:58641556-58641575 | Msa0820950:intron | 30.0% | |
| ! | GAACGAACATTTAACTTTAG+TGG | + | chr5_3:58641603-58641622 | None:intergenic | 30.0% |
| ! | GCATGAAAATAACTTTTGGT+TGG | - | chr5_3:58641718-58641737 | Msa0820950:intron | 30.0% |
| TAATACACTGTCTAACTTCT+TGG | - | chr5_3:58641795-58641814 | Msa0820950:intron | 30.0% | |
| TAAATATTTGTACGAGCTAC+CGG | - | chr5_3:58641848-58641867 | Msa0820950:intron | 30.0% | |
| ACGGAAATGATATTGTCATA+AGG | + | chr5_3:58642334-58642353 | None:intergenic | 30.0% | |
| AGATTTGCGATTTCCAATTT+GGG | - | chr5_3:58640117-58640136 | Msa0820950:CDS | 30.0% | |
| TGGTCCCTTAAGTATTTATT+TGG | - | chr5_3:58640227-58640246 | Msa0820950:CDS | 30.0% | |
| ! | TGGTCCCTTAACTATATTTT+TGG | + | chr5_3:58640427-58640446 | None:intergenic | 30.0% |
| ! | TTTAGGCTTAAATGCGTTTT+TGG | + | chr5_3:58640447-58640466 | None:intergenic | 30.0% |
| ATTTCTCTTTCCTCTTACTT+CGG | + | chr5_3:58640518-58640537 | None:intergenic | 30.0% | |
| !!! | AGCTATATTTTGGTGCAAAA+TGG | - | chr5_3:58640554-58640573 | Msa0820950:CDS | 30.0% |
| AGAAAATCTAGAGAGTCATA+GGG | + | chr5_3:58640879-58640898 | None:intergenic | 30.0% | |
| ! | AATATTAGTCTCATTAGGGA+GGG | + | chr5_3:58640923-58640942 | None:intergenic | 30.0% |
| ! | AAATATTAGTCTCATTAGGG+AGG | + | chr5_3:58640924-58640943 | None:intergenic | 30.0% |
| ! | GAGCAAATATTAGTCTCATT+AGG | + | chr5_3:58640928-58640947 | None:intergenic | 30.0% |
| TATGCTATGAAAAATAGGGA+TGG | + | chr5_3:58640990-58641009 | None:intergenic | 30.0% | |
| AATCATTGGGAATAGGAAAA+TGG | - | chr5_3:58641099-58641118 | Msa0820950:intron | 30.0% | |
| ! | TTATAAAAGCTAGACTTGCT+TGG | - | chr5_3:58641141-58641160 | Msa0820950:intron | 30.0% |
| TCATTAGTACATGTTTAGGA+GGG | + | chr5_3:58641219-58641238 | None:intergenic | 30.0% | |
| !! | ATTGTTAGGCTTTGAATCAA+CGG | + | chr5_3:58641290-58641309 | None:intergenic | 30.0% |
| !! | TATTATGAGAGAGCATTGTT+AGG | + | chr5_3:58641304-58641323 | None:intergenic | 30.0% |
| TTGATTAGCAATTAGTGTAG+GGG | + | chr5_3:58641380-58641399 | None:intergenic | 30.0% | |
| !!! | GTACGAAGAACACTTTTTTA+AGG | + | chr5_3:58641474-58641493 | None:intergenic | 30.0% |
| ATCTTCCTATCACTCTATTT+CGG | + | chr5_3:58641546-58641565 | None:intergenic | 30.0% | |
| ATAGGAAGATATGCGTTTAA+AGG | - | chr5_3:58641556-58641575 | Msa0820950:intron | 30.0% | |
| ! | GAACGAACATTTAACTTTAG+TGG | + | chr5_3:58641603-58641622 | None:intergenic | 30.0% |
| ! | GCATGAAAATAACTTTTGGT+TGG | - | chr5_3:58641718-58641737 | Msa0820950:intron | 30.0% |
| TAATACACTGTCTAACTTCT+TGG | - | chr5_3:58641795-58641814 | Msa0820950:intron | 30.0% | |
| TAAATATTTGTACGAGCTAC+CGG | - | chr5_3:58641848-58641867 | Msa0820950:intron | 30.0% | |
| ACGGAAATGATATTGTCATA+AGG | + | chr5_3:58642334-58642353 | None:intergenic | 30.0% | |
| CAAATTGGAAATCGCAAATC+TGG | + | chr5_3:58640118-58640137 | None:intergenic | 35.0% | |
| CAGATTTGCGATTTCCAATT+TGG | - | chr5_3:58640116-58640135 | Msa0820950:CDS | 35.0% | |
| GATTTGCGATTTCCAATTTG+GGG | - | chr5_3:58640118-58640137 | Msa0820950:CDS | 35.0% | |
| ! | TTTATCTCCGTTACCTGTTT+TGG | + | chr5_3:58640356-58640375 | None:intergenic | 35.0% |
| GAGAAAATCTAGAGAGTCAT+AGG | + | chr5_3:58640880-58640899 | None:intergenic | 35.0% | |
| ! | AACTTAAAGCTTTGGTCACT+TGG | - | chr5_3:58640963-58640982 | Msa0820950:intron | 35.0% |
| TTTAGGAGGGAAAAATGCTA+GGG | + | chr5_3:58641206-58641225 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | + | chr5_3:58641220-58641239 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | + | chr5_3:58641257-58641276 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | + | chr5_3:58641265-58641284 | None:intergenic | 35.0% | |
| !! | TTGTTAGGCTTTGAATCAAC+GGG | + | chr5_3:58641289-58641308 | None:intergenic | 35.0% |
| TCTCGGATAACACTTTCTAA+GGG | + | chr5_3:58641418-58641437 | None:intergenic | 35.0% | |
| ATCTCGGATAACACTTTCTA+AGG | + | chr5_3:58641419-58641438 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | - | chr5_3:58641999-58642018 | Msa0820950:intron | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | + | chr5_3:58642019-58642038 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | + | chr5_3:58642123-58642142 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | - | chr5_3:58642123-58642142 | Msa0820950:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | - | chr5_3:58642262-58642281 | Msa0820950:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | + | chr5_3:58642294-58642313 | None:intergenic | 35.0% | |
| GTCTGTATATTTGAGTCTCA+CGG | + | chr5_3:58642353-58642372 | None:intergenic | 35.0% | |
| CAAATTGGAAATCGCAAATC+TGG | + | chr5_3:58640118-58640137 | None:intergenic | 35.0% | |
| CAGATTTGCGATTTCCAATT+TGG | - | chr5_3:58640116-58640135 | Msa0820950:CDS | 35.0% | |
| GATTTGCGATTTCCAATTTG+GGG | - | chr5_3:58640118-58640137 | Msa0820950:CDS | 35.0% | |
| ! | TTTATCTCCGTTACCTGTTT+TGG | + | chr5_3:58640356-58640375 | None:intergenic | 35.0% |
| GAGAAAATCTAGAGAGTCAT+AGG | + | chr5_3:58640880-58640899 | None:intergenic | 35.0% | |
| ! | AACTTAAAGCTTTGGTCACT+TGG | - | chr5_3:58640963-58640982 | Msa0820950:intron | 35.0% |
| TTTAGGAGGGAAAAATGCTA+GGG | + | chr5_3:58641206-58641225 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | + | chr5_3:58641220-58641239 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | + | chr5_3:58641257-58641276 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | + | chr5_3:58641265-58641284 | None:intergenic | 35.0% | |
| !! | TTGTTAGGCTTTGAATCAAC+GGG | + | chr5_3:58641289-58641308 | None:intergenic | 35.0% |
| TCTCGGATAACACTTTCTAA+GGG | + | chr5_3:58641418-58641437 | None:intergenic | 35.0% | |
| ATCTCGGATAACACTTTCTA+AGG | + | chr5_3:58641419-58641438 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | - | chr5_3:58641999-58642018 | Msa0820950:intron | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | + | chr5_3:58642019-58642038 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | + | chr5_3:58642123-58642142 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | - | chr5_3:58642123-58642142 | Msa0820950:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | - | chr5_3:58642262-58642281 | Msa0820950:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | + | chr5_3:58642294-58642313 | None:intergenic | 35.0% | |
| GTCTGTATATTTGAGTCTCA+CGG | + | chr5_3:58642353-58642372 | None:intergenic | 35.0% | |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | - | chr5_3:58640251-58640270 | Msa0820950:CDS | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | - | chr5_3:58640252-58640271 | Msa0820950:CDS | 40.0% |
| ! | AACACACCAACCCAGATTTT+GGG | + | chr5_3:58640265-58640284 | None:intergenic | 40.0% |
| TTACTTCGGAGAAGATGAAG+GGG | + | chr5_3:58640504-58640523 | None:intergenic | 40.0% | |
| CTTACTTCGGAGAAGATGAA+GGG | + | chr5_3:58640505-58640524 | None:intergenic | 40.0% | |
| TCTTACTTCGGAGAAGATGA+AGG | + | chr5_3:58640506-58640525 | None:intergenic | 40.0% | |
| TTCATCTTCTCCGAAGTAAG+AGG | - | chr5_3:58640505-58640524 | Msa0820950:CDS | 40.0% | |
| TCGGTTGCAACTTAAAGCTT+TGG | - | chr5_3:58640955-58640974 | Msa0820950:intron | 40.0% | |
| TCTGAAGAGAAGAGAAGTGA+AGG | + | chr5_3:58641028-58641047 | None:intergenic | 40.0% | |
| GGGCAAAGAATGGTGAATTA+GGG | + | chr5_3:58641179-58641198 | None:intergenic | 40.0% | |
| AGGGCAAAGAATGGTGAATT+AGG | + | chr5_3:58641180-58641199 | None:intergenic | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | + | chr5_3:58641199-58641218 | None:intergenic | 40.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | + | chr5_3:58641200-58641219 | None:intergenic | 40.0% | |
| GTTTAGGAGGGAAAAATGCT+AGG | + | chr5_3:58641207-58641226 | None:intergenic | 40.0% | |
| GTTATCCGAGATAGAGTGAT+AGG | - | chr5_3:58641427-58641446 | Msa0820950:intron | 40.0% | |
| TTCCTCCTATCACTCTATCT+CGG | + | chr5_3:58641435-58641454 | None:intergenic | 40.0% | |
| GCTATCCGAAATAGAGTGAT+AGG | - | chr5_3:58641538-58641557 | Msa0820950:intron | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | - | chr5_3:58641625-58641644 | Msa0820950:intron | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | - | chr5_3:58642117-58642136 | Msa0820950:intron | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | + | chr5_3:58642274-58642293 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | + | chr5_3:58642378-58642397 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | + | chr5_3:58642379-58642398 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | - | chr5_3:58642376-58642395 | Msa0820950:intron | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | + | chr5_3:58642380-58642399 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | + | chr5_3:58642385-58642404 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | - | chr5_3:58642382-58642401 | Msa0820950:intron | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | - | chr5_3:58642386-58642405 | Msa0820950:intron | 40.0% | |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | - | chr5_3:58640251-58640270 | Msa0820950:CDS | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | - | chr5_3:58640252-58640271 | Msa0820950:CDS | 40.0% |
| ! | AACACACCAACCCAGATTTT+GGG | + | chr5_3:58640265-58640284 | None:intergenic | 40.0% |
| TTACTTCGGAGAAGATGAAG+GGG | + | chr5_3:58640504-58640523 | None:intergenic | 40.0% | |
| CTTACTTCGGAGAAGATGAA+GGG | + | chr5_3:58640505-58640524 | None:intergenic | 40.0% | |
| TCTTACTTCGGAGAAGATGA+AGG | + | chr5_3:58640506-58640525 | None:intergenic | 40.0% | |
| TTCATCTTCTCCGAAGTAAG+AGG | - | chr5_3:58640505-58640524 | Msa0820950:CDS | 40.0% | |
| TCGGTTGCAACTTAAAGCTT+TGG | - | chr5_3:58640955-58640974 | Msa0820950:intron | 40.0% | |
| TCTGAAGAGAAGAGAAGTGA+AGG | + | chr5_3:58641028-58641047 | None:intergenic | 40.0% | |
| GGGCAAAGAATGGTGAATTA+GGG | + | chr5_3:58641179-58641198 | None:intergenic | 40.0% | |
| AGGGCAAAGAATGGTGAATT+AGG | + | chr5_3:58641180-58641199 | None:intergenic | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | + | chr5_3:58641199-58641218 | None:intergenic | 40.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | + | chr5_3:58641200-58641219 | None:intergenic | 40.0% | |
| GTTTAGGAGGGAAAAATGCT+AGG | + | chr5_3:58641207-58641226 | None:intergenic | 40.0% | |
| GTTATCCGAGATAGAGTGAT+AGG | - | chr5_3:58641427-58641446 | Msa0820950:intron | 40.0% | |
| TTCCTCCTATCACTCTATCT+CGG | + | chr5_3:58641435-58641454 | None:intergenic | 40.0% | |
| GCTATCCGAAATAGAGTGAT+AGG | - | chr5_3:58641538-58641557 | Msa0820950:intron | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | - | chr5_3:58641625-58641644 | Msa0820950:intron | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | - | chr5_3:58642117-58642136 | Msa0820950:intron | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | + | chr5_3:58642274-58642293 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | + | chr5_3:58642378-58642397 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | + | chr5_3:58642379-58642398 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | - | chr5_3:58642376-58642395 | Msa0820950:intron | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | + | chr5_3:58642380-58642399 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | + | chr5_3:58642385-58642404 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | - | chr5_3:58642382-58642401 | Msa0820950:intron | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | - | chr5_3:58642386-58642405 | Msa0820950:intron | 40.0% | |
| CGATTTCCAATTTGGGGAAG+AGG | - | chr5_3:58640124-58640143 | Msa0820950:CDS | 45.0% | |
| TTTCCAATTTGGGGAAGAGG+AGG | - | chr5_3:58640127-58640146 | Msa0820950:CDS | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | - | chr5_3:58640256-58640275 | Msa0820950:CDS | 45.0% | |
| ! | CAACACACCAACCCAGATTT+TGG | + | chr5_3:58640266-58640285 | None:intergenic | 45.0% |
| TTAACGGAAGGGACCAAAAC+AGG | - | chr5_3:58640340-58640359 | Msa0820950:intron | 45.0% | |
| GAAGGGACCAAAACAGGTAA+CGG | - | chr5_3:58640346-58640365 | Msa0820950:intron | 45.0% | |
| ATCTAGAGAGTCATAGGGTG+TGG | + | chr5_3:58640874-58640893 | None:intergenic | 45.0% | |
| GGTCAAGTGAACAAAGCTTG+TGG | + | chr5_3:58640902-58640921 | None:intergenic | 45.0% | |
| CTAGGGATTAGGGCAAAGAA+TGG | + | chr5_3:58641189-58641208 | None:intergenic | 45.0% | |
| ATCCGAGATAGAGTGATAGG+AGG | - | chr5_3:58641430-58641449 | Msa0820950:intron | 45.0% | |
| CTCCAACCATCTGTCAACAA+CGG | + | chr5_3:58641942-58641961 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | - | chr5_3:58642002-58642021 | Msa0820950:intron | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | + | chr5_3:58642013-58642032 | None:intergenic | 45.0% | |
| TGATAGGGTGGATAATCAGC+TGG | + | chr5_3:58642068-58642087 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | - | chr5_3:58642079-58642098 | Msa0820950:intron | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | + | chr5_3:58642134-58642153 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | - | chr5_3:58642409-58642428 | Msa0820950:intron | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | - | chr5_3:58642417-58642436 | Msa0820950:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | - | chr5_3:58642418-58642437 | Msa0820950:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | - | chr5_3:58642456-58642475 | Msa0820950:CDS | 45.0% |
| CGATTTCCAATTTGGGGAAG+AGG | - | chr5_3:58640124-58640143 | Msa0820950:CDS | 45.0% | |
| TTTCCAATTTGGGGAAGAGG+AGG | - | chr5_3:58640127-58640146 | Msa0820950:CDS | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | - | chr5_3:58640256-58640275 | Msa0820950:CDS | 45.0% | |
| ! | CAACACACCAACCCAGATTT+TGG | + | chr5_3:58640266-58640285 | None:intergenic | 45.0% |
| TTAACGGAAGGGACCAAAAC+AGG | - | chr5_3:58640340-58640359 | Msa0820950:intron | 45.0% | |
| GAAGGGACCAAAACAGGTAA+CGG | - | chr5_3:58640346-58640365 | Msa0820950:intron | 45.0% | |
| ATCTAGAGAGTCATAGGGTG+TGG | + | chr5_3:58640874-58640893 | None:intergenic | 45.0% | |
| GGTCAAGTGAACAAAGCTTG+TGG | + | chr5_3:58640902-58640921 | None:intergenic | 45.0% | |
| CTAGGGATTAGGGCAAAGAA+TGG | + | chr5_3:58641189-58641208 | None:intergenic | 45.0% | |
| ATCCGAGATAGAGTGATAGG+AGG | - | chr5_3:58641430-58641449 | Msa0820950:intron | 45.0% | |
| CTCCAACCATCTGTCAACAA+CGG | + | chr5_3:58641942-58641961 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | - | chr5_3:58642002-58642021 | Msa0820950:intron | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | + | chr5_3:58642013-58642032 | None:intergenic | 45.0% | |
| TGATAGGGTGGATAATCAGC+TGG | + | chr5_3:58642068-58642087 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | - | chr5_3:58642079-58642098 | Msa0820950:intron | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | + | chr5_3:58642134-58642153 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | - | chr5_3:58642409-58642428 | Msa0820950:intron | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | - | chr5_3:58642417-58642436 | Msa0820950:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | - | chr5_3:58642418-58642437 | Msa0820950:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | - | chr5_3:58642456-58642475 | Msa0820950:CDS | 45.0% |
| !!! | ATTTTTTTGAATTTATTTAA+CGG | - | chr5_3:58640324-58640343 | Msa0820950:intron | 5.0% |
| !!! | ATTTTTTTGAATTTATTTAA+CGG | - | chr5_3:58640324-58640343 | Msa0820950:intron | 5.0% |
| TGGGTAAGGGGTTTGCGATT+TGG | - | chr5_3:58640073-58640092 | Msa0820950:CDS | 50.0% | |
| GGGTAAGGGGTTTGCGATTT+GGG | - | chr5_3:58640074-58640093 | Msa0820950:CDS | 50.0% | |
| GGTAAGGGGTTTGCGATTTG+GGG | - | chr5_3:58640075-58640094 | Msa0820950:CDS | 50.0% | |
| ! | TTTGCGATTTGGGGAAGAGG+TGG | - | chr5_3:58640084-58640103 | Msa0820950:CDS | 50.0% |
| ATTTGGGGAAGAGGTGGAGA+AGG | - | chr5_3:58640090-58640109 | Msa0820950:CDS | 50.0% | |
| TCTCCTCCTCTTCCCCAAAT+TGG | + | chr5_3:58640133-58640152 | None:intergenic | 50.0% | |
| ATTTGGGGAAGAGGAGGAGA+AGG | - | chr5_3:58640133-58640152 | Msa0820950:CDS | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | + | chr5_3:58641870-58641889 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | - | chr5_3:58641870-58641889 | Msa0820950:intron | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | - | chr5_3:58641876-58641895 | Msa0820950:intron | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | - | chr5_3:58641877-58641896 | Msa0820950:intron | 50.0% |
| AGTCAGCCGTTGTTGACAGA+TGG | - | chr5_3:58641933-58641952 | Msa0820950:intron | 50.0% | |
| AGCCGTTGTTGACAGATGGT+TGG | - | chr5_3:58641937-58641956 | Msa0820950:intron | 50.0% | |
| GCACTCATGGAATGATAGGG+TGG | + | chr5_3:58642080-58642099 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | + | chr5_3:58642083-58642102 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | + | chr5_3:58642084-58642103 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | - | chr5_3:58642143-58642162 | Msa0820950:intron | 50.0% | |
| TCGCAAACCCCTTACCCAAA+TGG | + | chr5_3:58640071-58640090 | None:intergenic | 50.0% | |
| TGGGTAAGGGGTTTGCGATT+TGG | - | chr5_3:58640073-58640092 | Msa0820950:CDS | 50.0% | |
| GGGTAAGGGGTTTGCGATTT+GGG | - | chr5_3:58640074-58640093 | Msa0820950:CDS | 50.0% | |
| GGTAAGGGGTTTGCGATTTG+GGG | - | chr5_3:58640075-58640094 | Msa0820950:CDS | 50.0% | |
| ! | TTTGCGATTTGGGGAAGAGG+TGG | - | chr5_3:58640084-58640103 | Msa0820950:CDS | 50.0% |
| ATTTGGGGAAGAGGTGGAGA+AGG | - | chr5_3:58640090-58640109 | Msa0820950:CDS | 50.0% | |
| TCTCCTCCTCTTCCCCAAAT+TGG | + | chr5_3:58640133-58640152 | None:intergenic | 50.0% | |
| ATTTGGGGAAGAGGAGGAGA+AGG | - | chr5_3:58640133-58640152 | Msa0820950:CDS | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | + | chr5_3:58641870-58641889 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | - | chr5_3:58641870-58641889 | Msa0820950:intron | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | - | chr5_3:58641876-58641895 | Msa0820950:intron | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | - | chr5_3:58641877-58641896 | Msa0820950:intron | 50.0% |
| AGTCAGCCGTTGTTGACAGA+TGG | - | chr5_3:58641933-58641952 | Msa0820950:intron | 50.0% | |
| AGCCGTTGTTGACAGATGGT+TGG | - | chr5_3:58641937-58641956 | Msa0820950:intron | 50.0% | |
| GCACTCATGGAATGATAGGG+TGG | + | chr5_3:58642080-58642099 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | + | chr5_3:58642083-58642102 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | + | chr5_3:58642084-58642103 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | - | chr5_3:58642143-58642162 | Msa0820950:intron | 50.0% | |
| ! | GGGTTTGCGATTTGGGGAAG+AGG | - | chr5_3:58640081-58640100 | Msa0820950:CDS | 55.0% |
| TGTACGAGCTACCGGAGCAA+TGG | - | chr5_3:58641856-58641875 | Msa0820950:intron | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | - | chr5_3:58642421-58642440 | Msa0820950:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | + | chr5_3:58642428-58642447 | None:intergenic | 55.0% | |
| ! | GGGTTTGCGATTTGGGGAAG+AGG | - | chr5_3:58640081-58640100 | Msa0820950:CDS | 55.0% |
| TGTACGAGCTACCGGAGCAA+TGG | - | chr5_3:58641856-58641875 | Msa0820950:intron | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | - | chr5_3:58642421-58642440 | Msa0820950:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | + | chr5_3:58642428-58642447 | None:intergenic | 55.0% | |
| ACACGATGCTGCCGCACTCA+TGG | + | chr5_3:58642093-58642112 | None:intergenic | 60.0% | |
| ACACGATGCTGCCGCACTCA+TGG | + | chr5_3:58642093-58642112 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 58640070 | 58642501 | 58640070 | ID=Msa0820950;Name=Msa0820950 |
| chr5_3 | mRNA | 58640070 | 58642501 | 58640070 | ID=Msa0820950-mRNA-1;Parent=Msa0820950;Name=Msa0820950-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.75|0|0|4|0|200 |
| chr5_3 | exon | 58642417 | 58642501 | 58642417 | ID=Msa0820950-mRNA-1:exon:17842;Parent=Msa0820950-mRNA-1 |
| chr5_3 | exon | 58640604 | 58640745 | 58640604 | ID=Msa0820950-mRNA-1:exon:17841;Parent=Msa0820950-mRNA-1 |
| chr5_3 | exon | 58640444 | 58640579 | 58640444 | ID=Msa0820950-mRNA-1:exon:17840;Parent=Msa0820950-mRNA-1 |
| chr5_3 | exon | 58640070 | 58640306 | 58640070 | ID=Msa0820950-mRNA-1:exon:17839;Parent=Msa0820950-mRNA-1 |
| chr5_3 | CDS | 58642417 | 58642501 | 58642417 | ID=Msa0820950-mRNA-1:cds;Parent=Msa0820950-mRNA-1 |
| chr5_3 | CDS | 58640604 | 58640745 | 58640604 | ID=Msa0820950-mRNA-1:cds;Parent=Msa0820950-mRNA-1 |
| chr5_3 | CDS | 58640444 | 58640579 | 58640444 | ID=Msa0820950-mRNA-1:cds;Parent=Msa0820950-mRNA-1 |
| chr5_3 | CDS | 58640070 | 58640306 | 58640070 | ID=Msa0820950-mRNA-1:cds;Parent=Msa0820950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
