Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822900 | XP_039684542.1 | 31.390 | 223 | 149 | 1 | 175 | 397 | 38 | 256 | 1.89e-33 | 136 |
| Msa0822900 | XP_039684542.1 | 81.905 | 105 | 19 | 0 | 1 | 105 | 145 | 249 | 8.22e-53 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822900 | G7JTM9 | 31.019 | 216 | 145 | 1 | 162 | 377 | 40 | 251 | 3.02e-24 | 116 |
| Msa0822900 | G7JTM9 | 78.495 | 93 | 20 | 0 | 1 | 93 | 160 | 252 | 9.46e-40 | 161 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0822900 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822900 | MtrunA17_Chr1g0206471 | 30.932 | 236 | 159 | 2 | 162 | 397 | 37 | 268 | 8.24e-41 | 145 |
| Msa0822900 | MtrunA17_Chr1g0206471 | 52.475 | 101 | 48 | 0 | 5 | 105 | 161 | 261 | 6.75e-27 | 108 |
| Msa0822900 | MtrunA17_Chr7g0270401 | 29.958 | 237 | 158 | 2 | 163 | 397 | 37 | 267 | 1.16e-34 | 129 |
| Msa0822900 | MtrunA17_Chr7g0270401 | 40.385 | 104 | 62 | 0 | 1 | 104 | 156 | 259 | 2.18e-22 | 95.9 |
| Msa0822900 | MtrunA17_Chr1g0193281 | 32.075 | 159 | 107 | 1 | 162 | 319 | 36 | 194 | 5.53e-21 | 90.1 |
| Msa0822900 | MtrunA17_Chr3g0123031 | 40.000 | 105 | 44 | 4 | 10 | 113 | 1 | 87 | 3.90e-16 | 73.2 |
| Msa0822900 | MtrunA17_Chr7g0234161 | 48.750 | 80 | 41 | 0 | 3 | 82 | 44 | 123 | 4.02e-16 | 74.3 |
| Msa0822900 | MtrunA17_Chr8g0359311 | 50.000 | 70 | 35 | 0 | 36 | 105 | 18 | 87 | 1.75e-15 | 71.6 |
| Msa0822900 | MtrunA17_Chr6g0473661 | 23.077 | 338 | 213 | 9 | 78 | 393 | 145 | 457 | 1.81e-15 | 78.2 |
| Msa0822900 | MtrunA17_Chr7g0228461 | 35.714 | 98 | 62 | 1 | 179 | 275 | 1 | 98 | 2.54e-15 | 73.2 |
| Msa0822900 | MtrunA17_Chr7g0237161 | 37.975 | 79 | 49 | 0 | 20 | 98 | 5 | 83 | 1.64e-13 | 65.9 |
| Msa0822900 | MtrunA17_Chr4g0075931 | 50.943 | 53 | 26 | 0 | 336 | 388 | 2 | 54 | 1.34e-12 | 63.9 |
| Msa0822900 | MtrunA17_Chr1g0207921 | 43.836 | 73 | 41 | 0 | 33 | 105 | 114 | 186 | 1.04e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 103 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTCCTTGGTATTTAT+TGG | 0.197880 | 5_3:-61442939 | None:intergenic |
| AAACTAAAATTGAAGTTATC+AGG | 0.253905 | 5_3:-61442738 | None:intergenic |
| GATACAATTGGTTCTGAGTT+AGG | 0.256142 | 5_3:+61442402 | Msa0822900:CDS |
| AATTCGTTTGGCAGTGAATA+AGG | 0.276324 | 5_3:-61442697 | None:intergenic |
| CCAAACGAATTATCCCTTAT+AGG | 0.293420 | 5_3:+61442709 | Msa0822900:CDS |
| TTATCAGGGTGATGCCTATA+AGG | 0.300191 | 5_3:-61442723 | None:intergenic |
| ACTTTCATATGACCCTGTTT+TGG | 0.315266 | 5_3:+61442905 | Msa0822900:CDS |
| AGAGGTATTGGTTGAGAGAA+AGG | 0.340490 | 5_3:+61442464 | Msa0822900:CDS |
| GGCATAACAGATTCCAAAAC+AGG | 0.341760 | 5_3:-61442918 | None:intergenic |
| GTACAGATTCTGTATTATCT+TGG | 0.348016 | 5_3:+61440737 | Msa0822900:intron |
| TTAAGCCGCAATGTGATTGC+GGG | 0.384335 | 5_3:+61443062 | Msa0822900:CDS |
| CCTCATTGCCCGGCACAAAC+TGG | 0.389495 | 5_3:-61440841 | None:intergenic |
| CGAGGCAGCAAAAGGTTATC+TGG | 0.393945 | 5_3:+61442782 | Msa0822900:CDS |
| TGGATTTGCTCAGATGTGTT+TGG | 0.402220 | 5_3:+61440757 | Msa0822900:CDS |
| TCCAAGTGAGGGATCGTTAT+GGG | 0.408480 | 5_3:+61442595 | Msa0822900:CDS |
| CCTATAAGGGATAATTCGTT+TGG | 0.411328 | 5_3:-61442709 | None:intergenic |
| CTCGTCAACACTTAACCATT+TGG | 0.422906 | 5_3:-61442763 | None:intergenic |
| TTATAATGAGATAGAGGTAT+TGG | 0.426836 | 5_3:+61442452 | Msa0822900:CDS |
| GCAGCTGATGTTGATTGGTT+GGG | 0.428655 | 5_3:+61442187 | Msa0822900:intron |
| AATAAGGCTGGTACACCAAC+TGG | 0.430177 | 5_3:-61442681 | None:intergenic |
| ATACAATTGGTTCTGAGTTA+GGG | 0.448544 | 5_3:+61442403 | Msa0822900:CDS |
| CGCAGCTGATGTTGATTGGT+TGG | 0.470953 | 5_3:+61442186 | Msa0822900:intron |
| CGAACCACACATACCTGCTT+GGG | 0.471725 | 5_3:-61442280 | None:intergenic |
| ATCCAAGTGAGGGATCGTTA+TGG | 0.474014 | 5_3:+61442594 | Msa0822900:CDS |
| TGGTTGATGAGCATGGAAAT+AGG | 0.477603 | 5_3:+61440804 | Msa0822900:CDS |
| AATGAGGCTCACTTTAAGAT+AGG | 0.480282 | 5_3:+61440857 | Msa0822900:CDS |
| ACCAAGGACTTCTATTTGAC+AGG | 0.481742 | 5_3:+61442948 | Msa0822900:CDS |
| TTAAGCTCGTCATGCACAAA+TGG | 0.483498 | 5_3:-61440574 | None:intergenic |
| ATGCACTCTCCAGTTTGTGC+CGG | 0.484757 | 5_3:+61440832 | Msa0822900:CDS |
| GTCTCATTTGAACCAACTCC+AGG | 0.485486 | 5_3:-61440947 | None:intergenic |
| TATCAGGGTGATGCCTATAA+GGG | 0.487970 | 5_3:-61442722 | None:intergenic |
| TGGTTAATGTGCAGCCGTCT+CGG | 0.490790 | 5_3:+61442565 | Msa0822900:CDS |
| CCCCATAACGATCCCTCACT+TGG | 0.491689 | 5_3:-61442596 | None:intergenic |
| GAGAGTATGTTTGCGATGGC+TGG | 0.493354 | 5_3:+61442223 | Msa0822900:CDS |
| ACCTCTATCTCATTATAAGC+AGG | 0.494280 | 5_3:-61442447 | None:intergenic |
| TGCACTCTCCAGTTTGTGCC+GGG | 0.495828 | 5_3:+61440833 | Msa0822900:CDS |
| TCTGCATTGTACAGTCTAAG+AGG | 0.497821 | 5_3:+61442064 | Msa0822900:CDS |
| TAATCGCAGCTGATGTTGAT+TGG | 0.503395 | 5_3:+61442182 | Msa0822900:intron |
| ATGTCGAAAGCCATTGATAG+AGG | 0.503796 | 5_3:-61442025 | None:intergenic |
| TTCTGAGTTAGGGAGATTTG+TGG | 0.506381 | 5_3:+61442413 | Msa0822900:CDS |
| GAACCGCACTACAAAATTGA+AGG | 0.508709 | 5_3:+61443020 | Msa0822900:CDS |
| AGTGTTGACGAGGCAGCAAA+AGG | 0.509439 | 5_3:+61442774 | Msa0822900:CDS |
| ACTTTAAGATAGGTGGTGGT+TGG | 0.509654 | 5_3:+61440867 | Msa0822900:CDS |
| GCGGGGTCATTCATCAGAAT+CGG | 0.513413 | 5_3:+61443080 | Msa0822900:CDS |
| TCCTGCTTATAATGAGATAG+AGG | 0.515008 | 5_3:+61442446 | Msa0822900:CDS |
| TTTAAGCCGCAATGTGATTG+CGG | 0.516214 | 5_3:+61443061 | Msa0822900:CDS |
| CCAGTTTGTGCCGGGCAATG+AGG | 0.520830 | 5_3:+61440841 | Msa0822900:CDS |
| TTAAAGTGAGCCTCATTGCC+CGG | 0.523371 | 5_3:-61440851 | None:intergenic |
| ACGAACCACACATACCTGCT+TGG | 0.527281 | 5_3:-61442281 | None:intergenic |
| CTCGGTTTGTTATCCAAGTG+AGG | 0.529202 | 5_3:+61442583 | Msa0822900:CDS |
| TATTCTGATGAGATGAATGA+TGG | 0.529840 | 5_3:+61440625 | Msa0822900:CDS |
| TTCAACACACATACGAGAAG+AGG | 0.530049 | 5_3:+61440599 | Msa0822900:CDS |
| ACTACAAAATTGAAGGTGAA+TGG | 0.531926 | 5_3:+61443027 | Msa0822900:CDS |
| TTGCGATGGCTGGACTGAAA+TGG | 0.532753 | 5_3:+61442233 | Msa0822900:CDS |
| GGGATTAAACTCAACGATGA+AGG | 0.534682 | 5_3:-61442260 | None:intergenic |
| CGTTTGGCAGTGAATAAGGC+TGG | 0.534772 | 5_3:-61442693 | None:intergenic |
| AGAATCGGTGCACCGAGTGT+TGG | 0.535004 | 5_3:+61443095 | Msa0822900:CDS |
| TGATTTAACTTAAAAGACAT+AGG | 0.538663 | 5_3:-61442648 | None:intergenic |
| CTTCTATTTGACAGGTGACA+CGG | 0.541677 | 5_3:+61442956 | Msa0822900:CDS |
| CGTTGAGTTTAATCCCAAGC+AGG | 0.541719 | 5_3:+61442267 | Msa0822900:CDS |
| GTGCTCTACGGCTTGAAGAA+TGG | 0.543766 | 5_3:+61442528 | Msa0822900:CDS |
| AGACATAGGAGGAACGTGAC+GGG | 0.544068 | 5_3:-61442634 | None:intergenic |
| ACCTGTCAAATAGAAGTCCT+TGG | 0.544786 | 5_3:-61442949 | None:intergenic |
| CAGCTGATGTTGATTGGTTG+GGG | 0.547368 | 5_3:+61442188 | Msa0822900:intron |
| CTTTGGAACGAACAAAAGCA+TGG | 0.547977 | 5_3:-61442998 | None:intergenic |
| TTCTATTTGACAGGTGACAC+GGG | 0.559448 | 5_3:+61442957 | Msa0822900:CDS |
| GCTCACTTTAAGATAGGTGG+TGG | 0.559544 | 5_3:+61440863 | Msa0822900:CDS |
| ATTGTATCTATCAAAAGTGA+TGG | 0.565871 | 5_3:-61442387 | None:intergenic |
| AACTAAAATTGAAGTTATCA+GGG | 0.566319 | 5_3:-61442737 | None:intergenic |
| TCGTCATGCACAAATGGAGC+AGG | 0.569381 | 5_3:-61440568 | None:intergenic |
| AATGAACTCAATGTGCTCTA+CGG | 0.571963 | 5_3:+61442516 | Msa0822900:CDS |
| ATTGAGATAAAGAACAACAT+AGG | 0.572790 | 5_3:-61441152 | None:intergenic |
| CTACAAACTCTAAAATTGCA+AGG | 0.573290 | 5_3:-61443141 | None:intergenic |
| TCTCATTTGAACCAACTCCA+GGG | 0.574158 | 5_3:-61440946 | None:intergenic |
| CATGGGTGCAACGCCAGACG+TGG | 0.579413 | 5_3:-61442980 | None:intergenic |
| TCGGTTTGTTATCCAAGTGA+GGG | 0.580775 | 5_3:+61442584 | Msa0822900:CDS |
| TGAGATGAATGATGGAGTCT+TGG | 0.580950 | 5_3:+61440633 | Msa0822900:CDS |
| CTGAAGTTGGTTGATGAGCA+TGG | 0.582601 | 5_3:+61440797 | Msa0822900:CDS |
| GACATAGGAGGAACGTGACG+GGG | 0.594376 | 5_3:-61442633 | None:intergenic |
| GAATGGTGGTGCGGTAACAT+TGG | 0.599612 | 5_3:+61442545 | Msa0822900:CDS |
| AAGGCTAGAGGACTTGAAGC+GGG | 0.603437 | 5_3:+61440902 | Msa0822900:CDS |
| TTTGGAACGAACAAAAGCAT+GGG | 0.605330 | 5_3:-61442997 | None:intergenic |
| CCAAGTGAGGGATCGTTATG+GGG | 0.612375 | 5_3:+61442596 | Msa0822900:CDS |
| TTTAACTTAAAAGACATAGG+AGG | 0.622219 | 5_3:-61442645 | None:intergenic |
| AACACAATGGTCAAGGCTAG+AGG | 0.623217 | 5_3:+61440890 | Msa0822900:CDS |
| TGTTATGCCAATAAATACCA+AGG | 0.633118 | 5_3:+61442932 | Msa0822900:CDS |
| CTCATTTGAACCAACTCCAG+GGG | 0.634306 | 5_3:-61440945 | None:intergenic |
| CAAGGCTAGAGGACTTGAAG+CGG | 0.635124 | 5_3:+61440901 | Msa0822900:CDS |
| CAAATGGTTAAGTGTTGACG+AGG | 0.635515 | 5_3:+61442764 | Msa0822900:CDS |
| GAAATATTAGCTCCAACACT+CGG | 0.635910 | 5_3:-61443107 | None:intergenic |
| TGGTTGGAACACAATGGTCA+AGG | 0.638321 | 5_3:+61440883 | Msa0822900:CDS |
| AAGACATAGGAGGAACGTGA+CGG | 0.639755 | 5_3:-61442635 | None:intergenic |
| GAGGCTCACTTTAAGATAGG+TGG | 0.645556 | 5_3:+61440860 | Msa0822900:CDS |
| CTCTACGGCTTGAAGAATGG+TGG | 0.645651 | 5_3:+61442531 | Msa0822900:CDS |
| TAAGCCGCAATGTGATTGCG+GGG | 0.649751 | 5_3:+61443063 | Msa0822900:CDS |
| TGATGAGAGTATGTTTGCGA+TGG | 0.651348 | 5_3:+61442219 | Msa0822900:CDS |
| CGGCTTGAAGAATGGTGGTG+CGG | 0.652815 | 5_3:+61442536 | Msa0822900:CDS |
| AGGTGGTGGTTGGAACACAA+TGG | 0.672265 | 5_3:+61440877 | Msa0822900:CDS |
| ATGACCCCGCAATCACATTG+CGG | 0.681733 | 5_3:-61443067 | None:intergenic |
| ACTTGGATAACAAACCGAGA+CGG | 0.695175 | 5_3:-61442579 | None:intergenic |
| ACATAGGAGGAACGTGACGG+GGG | 0.706248 | 5_3:-61442632 | None:intergenic |
| GCATAACAGATTCCAAAACA+GGG | 0.706918 | 5_3:-61442917 | None:intergenic |
| TTGATGAGCATGGAAATAGG+TGG | 0.756865 | 5_3:+61440807 | Msa0822900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAACTTATTATTTTATT+TGG | + | chr5_3:61440675-61440694 | Msa0822900:intron | 10.0% |
| !!! | TTAATTTGTCAGTTTTAAAA+TGG | + | chr5_3:61441195-61441214 | Msa0822900:intron | 15.0% |
| !!! | TTTAAAGTGTATTTTTTGAT+CGG | + | chr5_3:61441429-61441448 | Msa0822900:intron | 15.0% |
| !!! | TATATCCATATTTTAAATTG+CGG | - | chr5_3:61441562-61441581 | None:intergenic | 15.0% |
| !! | AATCACTTAATAATATATTG+CGG | - | chr5_3:61441613-61441632 | None:intergenic | 15.0% |
| !! | TATAGTTGTTATGTTATAAA+AGG | + | chr5_3:61441951-61441970 | Msa0822900:intron | 15.0% |
| !! | ATATATCAGAAGTTAAAAAA+GGG | - | chr5_3:61442820-61442839 | None:intergenic | 15.0% |
| !! | AATATATCAGAAGTTAAAAA+AGG | - | chr5_3:61442821-61442840 | None:intergenic | 15.0% |
| !! | TATATTATTAAGTGATTCAG+TGG | + | chr5_3:61441616-61441635 | Msa0822900:intron | 20.0% |
| !!! | TGATAGTGTAAACAATTTTA+GGG | - | chr5_3:61441688-61441707 | None:intergenic | 20.0% |
| !!! | AATGTTTTATAAGCATTTCA+GGG | + | chr5_3:61441988-61442007 | Msa0822900:intron | 20.0% |
| !! | CAACAAAAAAAAAAGAGATA+AGG | - | chr5_3:61442161-61442180 | None:intergenic | 20.0% |
| !!! | TGATTTAACTTAAAAGACAT+AGG | - | chr5_3:61442651-61442670 | None:intergenic | 20.0% |
| !! | AACTAAAATTGAAGTTATCA+GGG | - | chr5_3:61442740-61442759 | None:intergenic | 20.0% |
| !! | AAACTAAAATTGAAGTTATC+AGG | - | chr5_3:61442741-61442760 | None:intergenic | 20.0% |
| !! | TTTTGTTACAGCATTTAGTT+TGG | + | chr5_3:61441071-61441090 | Msa0822900:intron | 25.0% |
| ! | ATTGAGATAAAGAACAACAT+AGG | - | chr5_3:61441155-61441174 | None:intergenic | 25.0% |
| ! | ATGTTTATATCACGTGAAAA+TGG | - | chr5_3:61441263-61441282 | None:intergenic | 25.0% |
| !!! | ATATATAATTTGCTCGTTTG+TGG | - | chr5_3:61441319-61441338 | None:intergenic | 25.0% |
| ! | TATATATCATAGAATCCAGT+TGG | + | chr5_3:61441334-61441353 | Msa0822900:intron | 25.0% |
| !! | AATCACCGCAATTTAAAATA+TGG | + | chr5_3:61441554-61441573 | Msa0822900:intron | 25.0% |
| !!! | CAATTTTAGGGATACATAAA+TGG | - | chr5_3:61441676-61441695 | None:intergenic | 25.0% |
| !!! | GTGATAGTGTAAACAATTTT+AGG | - | chr5_3:61441689-61441708 | None:intergenic | 25.0% |
| ! | AATGTATTGTAACAGACATT+GGG | - | chr5_3:61441794-61441813 | None:intergenic | 25.0% |
| ! | AAATGTATTGTAACAGACAT+TGG | - | chr5_3:61441795-61441814 | None:intergenic | 25.0% |
| ! | ATGCTTATTAATATTCCCAA+TGG | + | chr5_3:61441928-61441947 | Msa0822900:intron | 25.0% |
| ! | AACATAACAACTATACCATT+GGG | - | chr5_3:61441946-61441965 | None:intergenic | 25.0% |
| ! | TAACATAACAACTATACCAT+TGG | - | chr5_3:61441947-61441966 | None:intergenic | 25.0% |
| !! | CAATGTTTTATAAGCATTTC+AGG | + | chr5_3:61441987-61442006 | Msa0822900:intron | 25.0% |
| ! | TCATCATAAACTTACTATCA+TGG | + | chr5_3:61442336-61442355 | Msa0822900:intron | 25.0% |
| ! | CTATCATGGTTAAATATACT+AGG | + | chr5_3:61442350-61442369 | Msa0822900:intron | 25.0% |
| ! | ATTGTATCTATCAAAAGTGA+TGG | - | chr5_3:61442390-61442409 | None:intergenic | 25.0% |
| !!! | TCACTTTTGATAGATACAAT+TGG | + | chr5_3:61442390-61442409 | Msa0822900:CDS | 25.0% |
| !! | TTATAATGAGATAGAGGTAT+TGG | + | chr5_3:61442452-61442471 | Msa0822900:CDS | 25.0% |
| !! | TTTAACTTAAAAGACATAGG+AGG | - | chr5_3:61442648-61442667 | None:intergenic | 25.0% |
| ! | AATCATGAAAAATTTCCAGT+TGG | + | chr5_3:61442666-61442685 | Msa0822900:CDS | 25.0% |
| !!! | TCAATTTTAGTTTCTCCAAA+TGG | + | chr5_3:61442748-61442767 | Msa0822900:CDS | 25.0% |
| TATTCTGATGAGATGAATGA+TGG | + | chr5_3:61440625-61440644 | Msa0822900:CDS | 30.0% | |
| GTACAGATTCTGTATTATCT+TGG | + | chr5_3:61440737-61440756 | Msa0822900:intron | 30.0% | |
| ! | TTAAAAAGTGCATATCCACA+TGG | - | chr5_3:61441499-61441518 | None:intergenic | 30.0% |
| TCTTAATGATGACTGTTCAT+AGG | + | chr5_3:61441816-61441835 | Msa0822900:intron | 30.0% | |
| AAGCATTAACTCTCCATTAT+GGG | - | chr5_3:61441914-61441933 | None:intergenic | 30.0% | |
| TAAGCATTAACTCTCCATTA+TGG | - | chr5_3:61441915-61441934 | None:intergenic | 30.0% | |
| ! | TGCATTTTTACCTCTATCAA+TGG | + | chr5_3:61442015-61442034 | Msa0822900:CDS | 30.0% |
| !! | ATACAATTGGTTCTGAGTTA+GGG | + | chr5_3:61442403-61442422 | Msa0822900:CDS | 30.0% |
| TGTTATGCCAATAAATACCA+AGG | + | chr5_3:61442932-61442951 | Msa0822900:CDS | 30.0% | |
| TAGAAGTCCTTGGTATTTAT+TGG | - | chr5_3:61442942-61442961 | None:intergenic | 30.0% | |
| ACTACAAAATTGAAGGTGAA+TGG | + | chr5_3:61443027-61443046 | Msa0822900:CDS | 30.0% | |
| !!! | AAGTTTTGTTGCTCTGAAGT+TGG | + | chr5_3:61440784-61440803 | Msa0822900:CDS | 35.0% |
| !! | AATGAGGCTCACTTTAAGAT+AGG | + | chr5_3:61440857-61440876 | Msa0822900:CDS | 35.0% |
| ! | CATTTTGCTGACAATTCTAC+TGG | + | chr5_3:61441033-61441052 | Msa0822900:intron | 35.0% |
| TAATTGCGGTGATCATATAG+CGG | - | chr5_3:61441462-61441481 | None:intergenic | 35.0% | |
| TTGCAAGACTCAGTTAATTG+CGG | - | chr5_3:61441476-61441495 | None:intergenic | 35.0% | |
| TATATTGCGGTGACTGTTAA+CGG | - | chr5_3:61441600-61441619 | None:intergenic | 35.0% | |
| TGTAACAGACATTGGGAAAA+AGG | - | chr5_3:61441787-61441806 | None:intergenic | 35.0% | |
| ATGACTGTTCATAGGTTCAA+TGG | + | chr5_3:61441824-61441843 | Msa0822900:intron | 35.0% | |
| TACCGCAACATTAACTGATT+GGG | - | chr5_3:61441885-61441904 | None:intergenic | 35.0% | |
| ATACCGCAACATTAACTGAT+TGG | - | chr5_3:61441886-61441905 | None:intergenic | 35.0% | |
| !! | GATACAATTGGTTCTGAGTT+AGG | + | chr5_3:61442402-61442421 | Msa0822900:CDS | 35.0% |
| TCCTGCTTATAATGAGATAG+AGG | + | chr5_3:61442446-61442465 | Msa0822900:CDS | 35.0% | |
| ACCTCTATCTCATTATAAGC+AGG | - | chr5_3:61442450-61442469 | None:intergenic | 35.0% | |
| AATGAACTCAATGTGCTCTA+CGG | + | chr5_3:61442516-61442535 | Msa0822900:CDS | 35.0% | |
| AATTCGTTTGGCAGTGAATA+AGG | - | chr5_3:61442700-61442719 | None:intergenic | 35.0% | |
| CCTATAAGGGATAATTCGTT+TGG | - | chr5_3:61442712-61442731 | None:intergenic | 35.0% | |
| CCAAACGAATTATCCCTTAT+AGG | + | chr5_3:61442709-61442728 | Msa0822900:CDS | 35.0% | |
| CAGAAGTTAAAAAAGGGTTG+TGG | - | chr5_3:61442814-61442833 | None:intergenic | 35.0% | |
| ! | ACTTTCATATGACCCTGTTT+TGG | + | chr5_3:61442905-61442924 | Msa0822900:CDS | 35.0% |
| GCATAACAGATTCCAAAACA+GGG | - | chr5_3:61442920-61442939 | None:intergenic | 35.0% | |
| ! | TTTGGAACGAACAAAAGCAT+GGG | - | chr5_3:61443000-61443019 | None:intergenic | 35.0% |
| ! | AATTTTGTAGTGCGGTTCTT+TGG | - | chr5_3:61443018-61443037 | None:intergenic | 35.0% |
| ! | TCACCTTCAATTTTGTAGTG+CGG | - | chr5_3:61443026-61443045 | None:intergenic | 35.0% |
| GAAATATTAGCTCCAACACT+CGG | - | chr5_3:61443110-61443129 | None:intergenic | 35.0% | |
| TTAAGCTCGTCATGCACAAA+TGG | - | chr5_3:61440577-61440596 | None:intergenic | 40.0% | |
| TTCAACACACATACGAGAAG+AGG | + | chr5_3:61440599-61440618 | Msa0822900:CDS | 40.0% | |
| ! | TGAGATGAATGATGGAGTCT+TGG | + | chr5_3:61440633-61440652 | Msa0822900:CDS | 40.0% |
| ! | TGGATTTGCTCAGATGTGTT+TGG | + | chr5_3:61440757-61440776 | Msa0822900:CDS | 40.0% |
| !! | TGGTTGATGAGCATGGAAAT+AGG | + | chr5_3:61440804-61440823 | Msa0822900:CDS | 40.0% |
| TTGATGAGCATGGAAATAGG+TGG | + | chr5_3:61440807-61440826 | Msa0822900:CDS | 40.0% | |
| !! | ACTTTAAGATAGGTGGTGGT+TGG | + | chr5_3:61440867-61440886 | Msa0822900:CDS | 40.0% |
| TCTCATTTGAACCAACTCCA+GGG | - | chr5_3:61440949-61440968 | None:intergenic | 40.0% | |
| TGAACGTATCAGAAACCAAC+TGG | - | chr5_3:61441352-61441371 | None:intergenic | 40.0% | |
| ACCGCAACATTAACTGATTG+GGG | - | chr5_3:61441884-61441903 | None:intergenic | 40.0% | |
| ATGTCGAAAGCCATTGATAG+AGG | - | chr5_3:61442028-61442047 | None:intergenic | 40.0% | |
| TCTGCATTGTACAGTCTAAG+AGG | + | chr5_3:61442064-61442083 | Msa0822900:CDS | 40.0% | |
| GAAGTCTGCAAAGAGAGTAA+AGG | - | chr5_3:61442139-61442158 | None:intergenic | 40.0% | |
| TAATCGCAGCTGATGTTGAT+TGG | + | chr5_3:61442182-61442201 | Msa0822900:intron | 40.0% | |
| ! | TGATGAGAGTATGTTTGCGA+TGG | + | chr5_3:61442219-61442238 | Msa0822900:CDS | 40.0% |
| GGGATTAAACTCAACGATGA+AGG | - | chr5_3:61442263-61442282 | None:intergenic | 40.0% | |
| TTCTGAGTTAGGGAGATTTG+TGG | + | chr5_3:61442413-61442432 | Msa0822900:CDS | 40.0% | |
| !! | AGAGGTATTGGTTGAGAGAA+AGG | + | chr5_3:61442464-61442483 | Msa0822900:CDS | 40.0% |
| ! | GAAGTAGTGTGCTTTTCTCA+TGG | + | chr5_3:61442489-61442508 | Msa0822900:CDS | 40.0% |
| ! | TAGTGTGCTTTTCTCATGGT+TGG | + | chr5_3:61442493-61442512 | Msa0822900:CDS | 40.0% |
| ACTTGGATAACAAACCGAGA+CGG | - | chr5_3:61442582-61442601 | None:intergenic | 40.0% | |
| !! | TCGGTTTGTTATCCAAGTGA+GGG | + | chr5_3:61442584-61442603 | Msa0822900:CDS | 40.0% |
| TATCAGGGTGATGCCTATAA+GGG | - | chr5_3:61442725-61442744 | None:intergenic | 40.0% | |
| TTATCAGGGTGATGCCTATA+AGG | - | chr5_3:61442726-61442745 | None:intergenic | 40.0% | |
| CTCGTCAACACTTAACCATT+TGG | - | chr5_3:61442766-61442785 | None:intergenic | 40.0% | |
| !! | CAAATGGTTAAGTGTTGACG+AGG | + | chr5_3:61442764-61442783 | Msa0822900:CDS | 40.0% |
| GGCATAACAGATTCCAAAAC+AGG | - | chr5_3:61442921-61442940 | None:intergenic | 40.0% | |
| ACCAAGGACTTCTATTTGAC+AGG | + | chr5_3:61442948-61442967 | Msa0822900:CDS | 40.0% | |
| ACCTGTCAAATAGAAGTCCT+TGG | - | chr5_3:61442952-61442971 | None:intergenic | 40.0% | |
| CTTCTATTTGACAGGTGACA+CGG | + | chr5_3:61442956-61442975 | Msa0822900:CDS | 40.0% | |
| TTCTATTTGACAGGTGACAC+GGG | + | chr5_3:61442957-61442976 | Msa0822900:CDS | 40.0% | |
| !! | CTTTGGAACGAACAAAAGCA+TGG | - | chr5_3:61443001-61443020 | None:intergenic | 40.0% |
| GAACCGCACTACAAAATTGA+AGG | + | chr5_3:61443020-61443039 | Msa0822900:CDS | 40.0% | |
| TTTAAGCCGCAATGTGATTG+CGG | + | chr5_3:61443061-61443080 | Msa0822900:CDS | 40.0% | |
| !! | CTGAAGTTGGTTGATGAGCA+TGG | + | chr5_3:61440797-61440816 | Msa0822900:CDS | 45.0% |
| TTAAAGTGAGCCTCATTGCC+CGG | - | chr5_3:61440854-61440873 | None:intergenic | 45.0% | |
| !! | GAGGCTCACTTTAAGATAGG+TGG | + | chr5_3:61440860-61440879 | Msa0822900:CDS | 45.0% |
| !! | GCTCACTTTAAGATAGGTGG+TGG | + | chr5_3:61440863-61440882 | Msa0822900:CDS | 45.0% |
| TGGTTGGAACACAATGGTCA+AGG | + | chr5_3:61440883-61440902 | Msa0822900:CDS | 45.0% | |
| AACACAATGGTCAAGGCTAG+AGG | + | chr5_3:61440890-61440909 | Msa0822900:CDS | 45.0% | |
| CTCATTTGAACCAACTCCAG+GGG | - | chr5_3:61440948-61440967 | None:intergenic | 45.0% | |
| GTCTCATTTGAACCAACTCC+AGG | - | chr5_3:61440950-61440969 | None:intergenic | 45.0% | |
| AACTGAGTCTTGCAACCATG+TGG | + | chr5_3:61441481-61441500 | Msa0822900:intron | 45.0% | |
| TGGGGGACGTGAATAATCAA+AGG | - | chr5_3:61441866-61441885 | None:intergenic | 45.0% | |
| CCGCAACATTAACTGATTGG+GGG | - | chr5_3:61441883-61441902 | None:intergenic | 45.0% | |
| CCCCCAATCAGTTAATGTTG+CGG | + | chr5_3:61441880-61441899 | Msa0822900:intron | 45.0% | |
| TGCGGTATATGTGCCCATAA+TGG | + | chr5_3:61441898-61441917 | Msa0822900:intron | 45.0% | |
| ! | GCAGCTGATGTTGATTGGTT+GGG | + | chr5_3:61442187-61442206 | Msa0822900:intron | 45.0% |
| ! | CAGCTGATGTTGATTGGTTG+GGG | + | chr5_3:61442188-61442207 | Msa0822900:intron | 45.0% |
| CGTTGAGTTTAATCCCAAGC+AGG | + | chr5_3:61442267-61442286 | Msa0822900:CDS | 45.0% | |
| TAATCCCAAGCAGGTATGTG+TGG | + | chr5_3:61442276-61442295 | Msa0822900:intron | 45.0% | |
| !! | CTCGGTTTGTTATCCAAGTG+AGG | + | chr5_3:61442583-61442602 | Msa0822900:CDS | 45.0% |
| ATCCAAGTGAGGGATCGTTA+TGG | + | chr5_3:61442594-61442613 | Msa0822900:CDS | 45.0% | |
| TCCAAGTGAGGGATCGTTAT+GGG | + | chr5_3:61442595-61442614 | Msa0822900:CDS | 45.0% | |
| AAGACATAGGAGGAACGTGA+CGG | - | chr5_3:61442638-61442657 | None:intergenic | 45.0% | |
| AATAAGGCTGGTACACCAAC+TGG | - | chr5_3:61442684-61442703 | None:intergenic | 45.0% | |
| TTAAGCCGCAATGTGATTGC+GGG | + | chr5_3:61443062-61443081 | Msa0822900:CDS | 45.0% | |
| TCGTCATGCACAAATGGAGC+AGG | - | chr5_3:61440571-61440590 | None:intergenic | 50.0% | |
| ATGCACTCTCCAGTTTGTGC+CGG | + | chr5_3:61440832-61440851 | Msa0822900:CDS | 50.0% | |
| ! | AGGTGGTGGTTGGAACACAA+TGG | + | chr5_3:61440877-61440896 | Msa0822900:CDS | 50.0% |
| CAAGGCTAGAGGACTTGAAG+CGG | + | chr5_3:61440901-61440920 | Msa0822900:CDS | 50.0% | |
| AAGGCTAGAGGACTTGAAGC+GGG | + | chr5_3:61440902-61440921 | Msa0822900:CDS | 50.0% | |
| !!! | GCGGGTGCAAGTGTTGTTTT+TGG | + | chr5_3:61440920-61440939 | Msa0822900:CDS | 50.0% |
| !!! | AGTGTTGTTTTTGGAGCCCC+TGG | + | chr5_3:61440929-61440948 | Msa0822900:CDS | 50.0% |
| ! | CGCAGCTGATGTTGATTGGT+TGG | + | chr5_3:61442186-61442205 | Msa0822900:intron | 50.0% |
| ! | GAGAGTATGTTTGCGATGGC+TGG | + | chr5_3:61442223-61442242 | Msa0822900:CDS | 50.0% |
| TTGCGATGGCTGGACTGAAA+TGG | + | chr5_3:61442233-61442252 | Msa0822900:CDS | 50.0% | |
| CGAACCACACATACCTGCTT+GGG | - | chr5_3:61442283-61442302 | None:intergenic | 50.0% | |
| ACGAACCACACATACCTGCT+TGG | - | chr5_3:61442284-61442303 | None:intergenic | 50.0% | |
| GTGCTCTACGGCTTGAAGAA+TGG | + | chr5_3:61442528-61442547 | Msa0822900:CDS | 50.0% | |
| CTCTACGGCTTGAAGAATGG+TGG | + | chr5_3:61442531-61442550 | Msa0822900:CDS | 50.0% | |
| ! | GAATGGTGGTGCGGTAACAT+TGG | + | chr5_3:61442545-61442564 | Msa0822900:CDS | 50.0% |
| TGGTTAATGTGCAGCCGTCT+CGG | + | chr5_3:61442565-61442584 | Msa0822900:CDS | 50.0% | |
| CCAAGTGAGGGATCGTTATG+GGG | + | chr5_3:61442596-61442615 | Msa0822900:CDS | 50.0% | |
| AGACATAGGAGGAACGTGAC+GGG | - | chr5_3:61442637-61442656 | None:intergenic | 50.0% | |
| CGTTTGGCAGTGAATAAGGC+TGG | - | chr5_3:61442696-61442715 | None:intergenic | 50.0% | |
| !! | AGTGTTGACGAGGCAGCAAA+AGG | + | chr5_3:61442774-61442793 | Msa0822900:CDS | 50.0% |
| CGAGGCAGCAAAAGGTTATC+TGG | + | chr5_3:61442782-61442801 | Msa0822900:CDS | 50.0% | |
| TAAGCCGCAATGTGATTGCG+GGG | + | chr5_3:61443063-61443082 | Msa0822900:CDS | 50.0% | |
| ATGACCCCGCAATCACATTG+CGG | - | chr5_3:61443070-61443089 | None:intergenic | 50.0% | |
| GCGGGGTCATTCATCAGAAT+CGG | + | chr5_3:61443080-61443099 | Msa0822900:CDS | 50.0% | |
| TGCACTCTCCAGTTTGTGCC+GGG | + | chr5_3:61440833-61440852 | Msa0822900:CDS | 55.0% | |
| !!! | GTTTTTGGAGCCCCTGGAGT+TGG | + | chr5_3:61440935-61440954 | Msa0822900:CDS | 55.0% |
| ! | CGGCTTGAAGAATGGTGGTG+CGG | + | chr5_3:61442536-61442555 | Msa0822900:CDS | 55.0% |
| CCCCATAACGATCCCTCACT+TGG | - | chr5_3:61442599-61442618 | None:intergenic | 55.0% | |
| ACATAGGAGGAACGTGACGG+GGG | - | chr5_3:61442635-61442654 | None:intergenic | 55.0% | |
| GACATAGGAGGAACGTGACG+GGG | - | chr5_3:61442636-61442655 | None:intergenic | 55.0% | |
| AGAATCGGTGCACCGAGTGT+TGG | + | chr5_3:61443095-61443114 | Msa0822900:CDS | 55.0% | |
| CCTCATTGCCCGGCACAAAC+TGG | - | chr5_3:61440844-61440863 | None:intergenic | 60.0% | |
| CCAGTTTGTGCCGGGCAATG+AGG | + | chr5_3:61440841-61440860 | Msa0822900:CDS | 60.0% | |
| CATGGGTGCAACGCCAGACG+TGG | - | chr5_3:61442983-61443002 | None:intergenic | 65.0% | |
| CAGGTGACACGGGCCACGTC+TGG | + | chr5_3:61442967-61442986 | Msa0822900:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 61440553 | 61443154 | 61440553 | ID=Msa0822900;Name=Msa0822900 |
| chr5_3 | mRNA | 61440553 | 61443154 | 61440553 | ID=Msa0822900-mRNA-1;Parent=Msa0822900;Name=Msa0822900-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.85|1|1|7|0|402 |
| chr5_3 | exon | 61440553 | 61440654 | 61440553 | ID=Msa0822900-mRNA-1:exon:18950;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61440743 | 61440956 | 61440743 | ID=Msa0822900-mRNA-1:exon:18951;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61441150 | 61441183 | 61441150 | ID=Msa0822900-mRNA-1:exon:18952;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61442009 | 61442085 | 61442009 | ID=Msa0822900-mRNA-1:exon:18953;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61442191 | 61442288 | 61442191 | ID=Msa0822900-mRNA-1:exon:18954;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61442372 | 61442803 | 61442372 | ID=Msa0822900-mRNA-1:exon:18955;Parent=Msa0822900-mRNA-1 |
| chr5_3 | exon | 61442903 | 61443154 | 61442903 | ID=Msa0822900-mRNA-1:exon:18956;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61440553 | 61440654 | 61440553 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61440743 | 61440956 | 61440743 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61441150 | 61441183 | 61441150 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61442009 | 61442085 | 61442009 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61442191 | 61442288 | 61442191 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61442372 | 61442803 | 61442372 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| chr5_3 | CDS | 61442903 | 61443154 | 61442903 | ID=Msa0822900-mRNA-1:cds;Parent=Msa0822900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
