AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824530 MtrunA17_Chr5g0445311 95.073 548 24 1 1 548 1 545 0.0 1075
Msa0824530 MtrunA17_Chr3g0101131 67.474 578 138 8 15 548 24 595 0.0 752
Msa0824530 MtrunA17_Chr3g0079691 44.068 472 166 12 41 433 109 561 2.80e-97 310
Msa0824530 MtrunA17_Chr3g0079691 48.148 81 39 2 203 280 495 575 7.66e-14 74.3
Msa0824530 MtrunA17_Chr5g0432161 42.986 442 155 12 45 431 86 485 1.39e-88 284
Msa0824530 MtrunA17_Chr5g0432161 50.704 71 21 2 203 259 421 491 1.40e-12 70.5
Msa0824530 MtrunA17_Chr3g0106491 44.389 401 187 9 39 431 57 429 1.69e-87 279
Msa0824530 MtrunA17_Chr7g0218081 40.839 453 205 12 29 462 95 503 4.84e-87 278
Msa0824530 MtrunA17_Chr5g0418191 51.557 289 122 7 202 481 150 429 1.64e-81 261
Msa0824530 MtrunA17_Chr7g0243891 40.678 413 178 10 51 432 63 439 1.32e-79 259
Msa0824530 MtrunA17_Chr7g0249311 48.621 290 94 3 196 433 172 458 1.92e-78 259
Msa0824530 MtrunA17_Chr4g0004911 41.026 390 181 12 47 429 51 398 6.71e-74 243
Msa0824530 MtrunA17_Chr4g0042831 50.196 255 90 5 185 436 127 347 3.49e-73 238
Msa0824530 MtrunA17_Chr4g0042831 36.232 138 77 3 367 503 145 272 1.19e-13 72.8
Msa0824530 MtrunA17_Chr7g0263531 46.125 271 137 4 164 426 151 420 1.49e-71 235
Msa0824530 MtrunA17_Chr5g0447701 42.742 248 130 5 202 445 91 330 6.00e-52 182
Msa0824530 MtrunA17_Chr5g0447701 50.000 64 31 1 365 428 90 152 1.36e-12 69.7
Msa0824530 MtrunA17_Chr4g0074001 41.322 242 123 6 202 429 185 421 2.46e-49 178
Msa0824530 MtrunA17_Chr4g0074001 53.731 67 30 1 202 267 358 424 5.70e-15 77.8
Msa0824530 MtrunA17_Chr7g0249301 78.049 82 18 0 348 429 273 354 4.39e-41 152
Msa0824530 MtrunA17_Chr7g0249301 53.774 106 46 2 196 299 55 159 1.14e-26 111
Msa0824530 MtrunA17_Chr7g0249301 59.016 61 24 1 366 426 61 120 9.08e-15 76.3
Msa0824530 MtrunA17_Chr7g0249301 55.000 60 26 1 203 261 292 351 1.06e-12 69.7
Msa0824530 MtrunA17_Chr5g0447711 32.534 292 142 6 163 434 41 297 4.18e-37 139
Msa0824530 MtrunA17_Chr1g0188941 69.737 76 23 0 351 426 35 110 1.36e-33 123
Msa0824530 MtrunA17_Chr1g0188941 50.000 62 30 1 203 263 51 112 1.22e-15 73.2
Msa0824530 MtrunA17_Chr8g0335811 61.250 80 31 0 344 423 131 210 6.21e-30 117
Msa0824530 MtrunA17_Chr8g0335811 49.367 79 39 1 188 265 139 217 4.17e-15 74.7
Msa0824530 MtrunA17_Chr3g0129361 63.514 74 27 0 350 423 127 200 1.38e-29 116
Msa0824530 MtrunA17_Chr3g0129361 46.835 79 38 2 188 265 129 204 1.48e-13 70.1
Msa0824530 MtrunA17_Chr7g0270191 59.770 87 35 0 351 437 129 215 1.31e-28 115
Msa0824530 MtrunA17_Chr7g0270191 41.096 146 79 5 204 345 146 288 1.91e-18 86.3
Msa0824530 MtrunA17_Chr5g0418781 57.292 96 37 2 348 442 105 197 4.45e-28 113
Msa0824530 MtrunA17_Chr5g0418781 62.500 56 20 1 204 258 125 180 1.67e-14 73.9
Msa0824530 MtrunA17_Chr2g0294231 57.609 92 39 0 351 442 187 278 5.33e-28 115
Msa0824530 MtrunA17_Chr2g0294231 51.282 78 37 1 188 264 188 265 2.40e-15 78.2
Msa0824530 MtrunA17_Chr8g0383351 61.333 75 28 1 350 423 142 216 5.77e-28 112
Msa0824530 MtrunA17_Chr8g0383351 53.125 64 26 2 203 265 160 220 1.33e-13 70.5
Msa0824530 MtrunA17_Chr1g0194481 58.140 86 36 0 347 432 138 223 1.06e-27 113
Msa0824530 MtrunA17_Chr1g0194481 50.000 84 41 1 188 270 143 226 1.12e-16 81.3
Msa0824530 MtrunA17_Chr4g0051881 63.158 76 28 0 353 428 164 239 1.92e-27 113
Msa0824530 MtrunA17_Chr4g0051881 59.322 59 23 1 204 261 179 237 6.29e-15 76.3
Msa0824530 MtrunA17_Chr5g0443131 61.333 75 29 0 353 427 143 217 8.28e-27 110
Msa0824530 MtrunA17_Chr5g0443131 57.627 59 24 1 204 261 158 216 2.86e-13 70.9
Msa0824530 MtrunA17_Chr1g0150801 59.211 76 30 1 348 423 84 158 1.44e-26 105
Msa0824530 MtrunA17_Chr1g0150801 50.000 58 28 1 203 259 102 159 2.39e-11 62.4
Msa0824530 MtrunA17_Chr7g0270831 48.039 102 48 2 331 431 184 281 1.97e-25 108
Msa0824530 MtrunA17_Chr8g0386241 53.571 84 39 0 348 431 84 167 2.68e-25 102
Msa0824530 MtrunA17_Chr8g0386241 56.897 58 24 1 203 259 103 160 7.71e-16 75.9
Msa0824530 MtrunA17_Chr7g0224801 63.235 68 25 0 358 425 84 151 5.18e-25 101
Msa0824530 MtrunA17_Chr7g0224801 48.485 66 33 1 203 267 93 158 1.99e-15 74.3
Msa0824530 MtrunA17_Chr8g0383251 47.191 89 47 0 354 442 95 183 1.23e-24 101
Msa0824530 MtrunA17_Chr2g0288871 55.128 78 34 1 350 426 288 365 7.84e-24 105
Msa0824530 MtrunA17_Chr2g0288871 34.091 132 64 4 133 261 254 365 3.46e-13 72.0
Msa0824530 MtrunA17_Chr4g0075201 55.000 80 35 1 350 428 250 329 1.07e-23 104
Msa0824530 MtrunA17_Chr4g0075201 50.820 61 28 2 203 261 267 327 7.40e-12 67.8
Msa0824530 MtrunA17_Chr2g0322391 55.000 80 35 1 350 428 332 411 1.29e-23 105
Msa0824530 MtrunA17_Chr3g0099641 52.564 78 36 1 350 426 234 311 1.58e-23 103
Msa0824530 MtrunA17_Chr4g0060271 44.167 120 65 2 309 426 196 315 2.13e-23 104
Msa0824530 MtrunA17_Chr4g0060271 50.820 61 28 2 203 261 255 315 3.50e-11 65.9
Msa0824530 MtrunA17_Chr3g0129321 53.333 75 35 0 353 427 104 178 6.06e-23 97.1
Msa0824530 MtrunA17_Chr3g0129321 50.000 60 29 1 203 261 118 177 4.82e-12 65.5
Msa0824530 MtrunA17_Chr4g0025061 48.889 90 45 1 340 428 333 422 9.12e-23 102
Msa0824530 MtrunA17_Chr5g0401821 48.958 96 37 2 331 425 174 258 1.01e-22 98.2
Msa0824530 MtrunA17_Chr4g0051181 55.000 80 35 1 349 427 225 304 1.05e-22 101
Msa0824530 MtrunA17_Chr4g0051181 52.459 61 27 2 203 261 243 303 7.03e-12 67.8
Msa0824530 MtrunA17_Chr4g0068541 40.580 138 76 3 351 487 192 324 1.09e-22 100
Msa0824530 MtrunA17_Chr4g0068541 61.667 60 22 1 203 261 208 267 3.32e-15 77.8
Msa0824530 MtrunA17_Chr1g0189391 38.686 137 80 2 291 423 18 154 1.10e-22 99.4
Msa0824530 MtrunA17_Chr4g0053281 45.545 101 43 2 332 431 242 331 2.96e-22 98.2
Msa0824530 MtrunA17_Chr7g0248721 57.692 78 32 1 346 423 120 196 3.02e-22 95.5
Msa0824530 MtrunA17_Chr7g0248721 56.897 58 23 2 203 259 141 197 7.66e-14 70.9
Msa0824530 MtrunA17_Chr6g0485431 34.667 150 94 2 281 426 65 214 6.34e-22 97.4
Msa0824530 MtrunA17_Chr1g0147881 52.381 84 36 2 346 428 244 324 1.90e-21 95.9
Msa0824530 MtrunA17_Chr7g0216891 39.370 127 75 2 307 431 158 284 2.67e-21 97.8
Msa0824530 MtrunA17_Chr7g0216891 52.542 59 26 2 203 259 219 277 3.15e-11 65.9
Msa0824530 MtrunA17_Chr5g0432071 42.593 108 52 2 174 271 65 172 3.69e-21 92.0
Msa0824530 MtrunA17_Chr5g0432071 51.613 62 29 1 367 428 104 164 1.46e-14 72.8
Msa0824530 MtrunA17_Chr2g0302391 50.633 79 38 1 351 428 195 273 7.67e-21 95.1
Msa0824530 MtrunA17_Chr3g0136961 61.017 59 22 1 366 423 137 195 1.93e-20 92.0
Msa0824530 MtrunA17_Chr4g0025051 53.333 75 34 1 354 427 322 396 2.20e-20 94.7
Msa0824530 MtrunA17_Chr7g0238921 63.158 57 21 0 367 423 124 180 2.57e-20 92.0
Msa0824530 MtrunA17_Chr7g0238921 57.895 57 23 1 203 258 124 180 3.35e-13 70.9
Msa0824530 MtrunA17_Chr2g0333851 57.812 64 26 1 365 427 167 230 1.03e-19 90.1
Msa0824530 MtrunA17_Chr2g0333851 46.269 67 31 3 204 265 170 236 2.11e-11 65.5
Msa0824530 MtrunA17_Chr1g0150281 57.895 57 23 1 368 423 141 197 2.99e-19 88.2
Msa0824530 MtrunA17_Chr4g0071521 52.703 74 34 1 351 423 229 302 4.68e-19 88.2
Msa0824530 MtrunA17_Chr4g0001361 57.143 63 26 1 365 426 160 222 1.65e-18 86.7
Msa0824530 MtrunA17_Chr4g0001361 50.000 60 28 2 204 261 163 222 5.59e-12 67.0
Msa0824530 MtrunA17_Chr1g0184691 59.016 61 24 1 364 423 290 350 2.06e-18 87.0
Msa0824530 MtrunA17_Chr1g0150271 41.414 99 47 4 331 426 71 161 6.13e-18 84.0
Msa0824530 MtrunA17_Chr8g0379461 48.485 66 33 1 368 432 77 142 3.05e-17 81.6
Msa0824530 MtrunA17_Chr7g0228941 52.459 61 28 1 364 423 49 109 5.68e-17 77.4
Msa0824530 MtrunA17_Chr3g0139021 48.000 75 38 1 351 424 298 372 1.40e-16 82.0
Msa0824530 MtrunA17_Chr7g0270051 50.000 70 34 1 368 436 54 123 1.82e-16 79.7
Msa0824530 MtrunA17_Chr7g0270051 51.667 60 27 2 204 261 54 113 4.36e-12 66.6
Msa0824530 MtrunA17_Chr2g0289181 47.297 74 38 1 356 428 3 76 2.43e-16 78.6
Msa0824530 MtrunA17_Chr2g0284321 45.679 81 39 2 354 429 18 98 2.82e-16 78.2
Msa0824530 MtrunA17_Chr2g0284321 32.867 143 87 4 204 343 36 172 8.76e-14 70.9
Msa0824530 MtrunA17_Chr2g0319961 50.000 64 31 1 368 430 81 144 3.27e-16 79.0
Msa0824530 MtrunA17_Chr8g0387501 49.254 67 33 1 366 431 128 194 5.16e-16 78.6
Msa0824530 MtrunA17_Chr8g0387501 45.714 70 35 3 204 271 130 198 2.44e-11 64.7
Msa0824530 MtrunA17_Chr1g0188961 64.000 50 18 0 387 436 3 52 1.14e-15 71.6
Msa0824530 MtrunA17_Chr4g0024391 42.500 80 45 1 350 428 212 291 1.86e-15 79.0
Msa0824530 MtrunA17_Chr8g0348311 50.769 65 31 1 368 431 156 220 3.17e-15 77.0
Msa0824530 MtrunA17_Chr7g0248691 39.048 105 47 3 328 431 131 219 3.57e-15 77.0
Msa0824530 MtrunA17_Chr2g0293481 39.583 96 46 3 368 454 268 360 5.78e-15 77.4
Msa0824530 MtrunA17_Chr6g0468181 51.351 74 35 1 213 285 12 85 1.04e-14 70.9
Msa0824530 MtrunA17_Chr1g0202461 46.479 71 34 2 368 437 262 329 9.35e-14 73.2
Msa0824530 MtrunA17_Chr4g0009881 50.847 59 28 1 204 262 18 75 1.69e-13 67.0
Msa0824530 MtrunA17_Chr3g0126391 50.847 59 26 1 366 421 132 190 8.54e-13 69.7
Msa0824530 MtrunA17_Chr3g0126391 48.529 68 29 3 193 256 125 190 2.43e-11 65.5
Msa0824530 MtrunA17_Chr5g0419241 54.348 46 21 0 350 395 60 105 1.51e-12 64.3
Msa0824530 MtrunA17_Chr8g0387981 50.000 58 26 1 367 421 132 189 6.51e-12 67.4
Msa0824530 MtrunA17_Chr8g0387981 52.632 57 23 2 204 256 133 189 8.17e-11 63.9
Msa0824530 MtrunA17_Chr8g0347251 47.143 70 31 3 191 256 126 193 1.46e-11 66.2
Msa0824530 MtrunA17_Chr7g0275531 47.458 59 28 1 366 421 117 175 1.60e-11 65.9
Msa0824530 MtrunA17_Chr7g0275531 43.038 79 39 3 194 266 109 187 3.27e-11 64.7
Msa0824530 MtrunA17_Chr1g0188971 62.162 37 14 0 351 387 46 82 8.19e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824530 AT4G26640.2 54.927 548 195 15 27 548 36 557 2.53e-179 517
Msa0824530 AT4G26640.7 54.512 543 195 15 32 548 1 517 1.98e-175 505
Msa0824530 AT4G26640.1 52.964 506 186 15 69 548 6 485 6.13e-155 452
Msa0824530 AT4G26640.5 60.647 371 99 12 202 548 34 381 2.16e-141 414
Msa0824530 AT4G26640.6 60.647 371 99 12 202 548 34 381 2.16e-141 414
Msa0824530 AT4G26640.4 60.647 371 99 12 202 548 34 381 2.16e-141 414
Msa0824530 AT4G26640.3 60.647 371 99 12 202 548 34 381 2.16e-141 414
Msa0824530 AT5G56270.1 43.400 447 190 8 41 429 108 549 7.44e-92 296
Msa0824530 AT2G03340.1 41.289 419 191 13 28 435 109 483 2.81e-84 271
Msa0824530 AT1G13960.1 40.000 440 179 16 15 426 86 468 2.75e-78 255
Msa0824530 AT2G38470.1 52.852 263 104 5 189 433 168 428 7.84e-78 254
Msa0824530 AT1G13960.2 53.279 244 92 5 202 426 75 315 5.18e-76 245
Msa0824530 AT4G26440.1 39.954 438 164 12 39 443 77 448 8.62e-75 248
Msa0824530 AT4G26440.1 38.136 118 61 3 367 473 178 294 1.72e-13 73.6
Msa0824530 AT4G26440.1 50.000 78 36 1 203 277 372 449 2.19e-12 70.1
Msa0824530 AT5G07100.1 39.461 408 128 11 23 429 7 296 4.15e-73 235
Msa0824530 AT5G07100.1 39.167 120 57 3 335 441 77 193 1.70e-17 84.0
Msa0824530 AT5G07100.2 51.082 231 64 4 200 429 21 203 1.11e-70 226
Msa0824530 AT5G07100.2 41.000 100 46 2 355 441 1 100 6.39e-16 77.4
Msa0824530 AT5G07100.2 46.250 80 42 1 185 263 123 202 1.56e-12 67.4
Msa0824530 AT5G07100.4 51.082 231 64 4 200 429 21 203 1.11e-70 226
Msa0824530 AT5G07100.4 41.000 100 46 2 355 441 1 100 6.39e-16 77.4
Msa0824530 AT5G07100.4 46.250 80 42 1 185 263 123 202 1.56e-12 67.4
Msa0824530 AT5G07100.5 51.082 231 64 4 200 429 21 203 1.11e-70 226
Msa0824530 AT5G07100.5 41.000 100 46 2 355 441 1 100 6.39e-16 77.4
Msa0824530 AT5G07100.5 46.250 80 42 1 185 263 123 202 1.56e-12 67.4
Msa0824530 AT5G07100.3 51.082 231 64 4 200 429 21 203 1.11e-70 226
Msa0824530 AT5G07100.3 41.000 100 46 2 355 441 1 100 6.39e-16 77.4
Msa0824530 AT5G07100.3 46.250 80 42 1 185 263 123 202 1.56e-12 67.4
Msa0824530 AT2G30250.1 52.814 231 103 3 200 428 163 389 1.35e-70 232
Msa0824530 AT3G01080.2 55.556 225 75 4 202 426 204 403 7.15e-70 232
Msa0824530 AT3G01080.1 55.556 225 75 4 202 426 166 365 9.30e-70 230
Msa0824530 AT2G04880.2 48.387 248 100 4 204 433 112 349 1.91e-67 226
Msa0824530 AT2G04880.1 44.610 269 103 4 204 433 112 373 8.90e-65 219
Msa0824530 AT2G37260.3 45.420 262 101 6 195 425 77 327 4.04e-58 197
Msa0824530 AT2G37260.3 55.738 61 26 1 368 428 86 145 8.75e-15 76.3
Msa0824530 AT2G37260.2 45.420 262 101 6 195 425 75 325 4.48e-58 197
Msa0824530 AT2G37260.2 55.738 61 26 1 368 428 84 143 9.42e-15 76.3
Msa0824530 AT2G37260.1 45.420 262 101 6 195 425 157 407 2.22e-57 198
Msa0824530 AT2G37260.1 55.738 61 26 1 368 428 166 225 1.20e-14 76.6
Msa0824530 AT4G30935.1 39.847 261 129 7 202 446 167 415 4.98e-48 174
Msa0824530 AT4G12020.6 45.000 200 101 4 197 387 462 661 1.41e-40 158
Msa0824530 AT4G12020.6 38.679 106 50 4 366 457 467 571 1.08e-12 71.6
Msa0824530 AT4G12020.8 45.000 200 101 4 197 387 462 661 1.41e-40 158
Msa0824530 AT4G12020.8 38.679 106 50 4 366 457 467 571 1.08e-12 71.6
Msa0824530 AT4G12020.10 45.000 200 101 4 197 387 462 661 1.55e-40 158
Msa0824530 AT4G12020.10 38.679 106 50 4 366 457 467 571 1.06e-12 71.6
Msa0824530 AT4G12020.7 45.000 200 101 4 197 387 462 661 1.59e-40 158
Msa0824530 AT4G12020.7 38.679 106 50 4 366 457 467 571 1.11e-12 71.6
Msa0824530 AT4G12020.1 45.000 200 101 4 197 387 462 661 1.59e-40 158
Msa0824530 AT4G12020.1 38.679 106 50 4 366 457 467 571 1.10e-12 71.6
Msa0824530 AT4G12020.9 45.000 200 101 4 197 387 462 661 1.59e-40 158
Msa0824530 AT4G12020.9 38.679 106 50 4 366 457 467 571 1.10e-12 71.6
Msa0824530 AT4G12020.3 45.000 200 101 4 197 387 462 661 1.78e-40 157
Msa0824530 AT4G12020.3 38.679 106 50 4 366 457 467 571 1.06e-12 71.6
Msa0824530 AT4G12020.4 45.000 200 101 4 197 387 462 661 1.80e-40 157
Msa0824530 AT4G12020.4 38.679 106 50 4 366 457 467 571 1.07e-12 71.6
Msa0824530 AT4G12020.2 45.000 200 101 4 197 387 462 661 1.87e-40 157
Msa0824530 AT4G12020.2 38.679 106 50 4 366 457 467 571 1.11e-12 71.6
Msa0824530 AT4G12020.11 45.000 200 101 4 197 387 462 661 2.02e-40 157
Msa0824530 AT4G12020.11 38.679 106 50 4 366 457 467 571 1.55e-12 71.2
Msa0824530 AT4G12020.5 45.000 200 101 4 197 387 395 594 2.33e-40 157
Msa0824530 AT4G12020.5 38.679 106 50 4 366 457 400 504 1.32e-12 71.6
Msa0824530 AT2G44745.1 57.143 91 38 1 344 434 122 211 9.76e-31 119
Msa0824530 AT2G44745.1 51.389 72 34 1 188 258 130 201 8.32e-15 74.3
Msa0824530 AT4G18170.1 42.135 178 66 4 317 472 127 289 4.82e-30 120
Msa0824530 AT4G18170.1 57.627 59 24 1 204 261 173 231 2.44e-14 74.7
Msa0824530 AT4G39410.1 63.158 76 28 0 348 423 204 279 3.42e-29 117
Msa0824530 AT4G39410.1 41.111 90 49 2 188 276 208 294 8.10e-12 67.0
Msa0824530 AT1G29860.1 62.821 78 29 0 351 428 120 197 3.95e-28 114
Msa0824530 AT1G29860.1 59.322 59 23 1 204 261 137 195 2.18e-14 74.3
Msa0824530 AT1G69310.4 64.474 76 27 0 348 423 128 203 1.33e-27 112
Msa0824530 AT1G69310.4 60.714 56 21 1 204 258 148 203 7.13e-14 72.8
Msa0824530 AT1G69310.2 64.474 76 27 0 348 423 128 203 1.33e-27 112
Msa0824530 AT1G69310.2 60.714 56 21 1 204 258 148 203 7.13e-14 72.8
Msa0824530 AT1G69310.1 64.474 76 27 0 348 423 128 203 1.33e-27 112
Msa0824530 AT1G69310.1 60.714 56 21 1 204 258 148 203 7.13e-14 72.8
Msa0824530 AT5G26170.1 62.857 70 26 0 354 423 100 169 2.05e-27 108
Msa0824530 AT5G26170.1 49.123 57 28 1 203 258 113 169 3.93e-11 62.4
Msa0824530 AT3G01080.3 68.000 75 22 1 202 276 204 276 4.63e-27 112
Msa0824530 AT3G01080.3 55.556 63 27 1 367 429 205 266 3.52e-16 80.1
Msa0824530 AT2G47260.1 63.158 76 28 0 351 426 158 233 8.41e-27 111
Msa0824530 AT2G47260.1 50.000 78 38 1 204 280 175 252 2.13e-14 75.1
Msa0824530 AT5G46350.1 58.750 80 33 0 353 432 169 248 1.40e-26 110
Msa0824530 AT5G46350.1 53.731 67 28 2 204 269 184 248 5.30e-14 73.6
Msa0824530 AT5G49520.1 61.842 76 29 0 351 426 205 280 1.92e-26 112
Msa0824530 AT5G13080.1 61.111 72 28 0 354 425 54 125 5.09e-26 103
Msa0824530 AT5G13080.1 53.448 58 26 1 203 259 67 124 9.90e-15 72.0
Msa0824530 AT3G01970.1 53.933 89 41 0 354 442 52 140 5.93e-26 103
Msa0824530 AT3G01970.1 50.000 66 32 1 203 267 65 130 2.46e-14 70.9
Msa0824530 AT1G55600.1 62.667 75 28 0 354 428 294 368 7.65e-26 111
Msa0824530 AT1G55600.1 56.667 60 25 1 203 261 307 366 1.73e-14 76.6
Msa0824530 AT5G41570.1 60.563 71 28 0 353 423 84 154 5.00e-25 102
Msa0824530 AT5G41570.1 51.724 58 27 1 203 259 98 155 3.50e-13 68.6
Msa0824530 AT4G04450.2 57.500 80 33 1 350 428 181 260 1.06e-24 107
Msa0824530 AT1G64000.1 60.000 70 28 0 354 423 101 170 1.43e-24 101
Msa0824530 AT1G64000.1 51.724 58 27 1 203 259 114 171 1.06e-13 70.5
Msa0824530 AT5G64810.1 56.338 71 31 0 354 424 97 167 3.33e-24 100
Msa0824530 AT4G04450.1 57.500 80 33 1 350 428 275 354 4.93e-24 106
Msa0824530 AT2G46130.1 56.579 76 33 0 348 423 11 86 6.69e-24 97.1
Msa0824530 AT2G46130.1 46.154 78 41 1 183 259 10 87 6.66e-16 74.3
Msa0824530 AT1G62300.1 56.410 78 33 1 350 426 295 372 1.81e-23 104
Msa0824530 AT1G62300.1 38.000 100 56 3 168 261 273 372 7.65e-12 68.2
Msa0824530 AT4G22070.4 56.410 78 33 1 350 426 280 357 2.43e-23 104
Msa0824530 AT4G22070.3 56.410 78 33 1 350 426 280 357 2.43e-23 104
Msa0824530 AT4G22070.2 56.410 78 33 1 350 426 280 357 2.43e-23 104
Msa0824530 AT4G22070.1 56.410 78 33 1 350 426 280 357 2.43e-23 104
Msa0824530 AT1G69310.3 60.526 76 26 1 348 423 128 199 7.42e-23 99.4
Msa0824530 AT3G62340.1 59.459 74 30 0 353 426 104 177 1.83e-22 97.8
Msa0824530 AT3G62340.1 56.667 60 25 1 203 261 118 177 9.21e-14 72.4
Msa0824530 AT1G68150.1 55.128 78 34 1 351 427 219 296 2.68e-22 99.4
Msa0824530 AT1G68150.1 52.459 61 27 2 203 261 235 295 4.68e-12 68.2
Msa0824530 AT4G01720.1 54.430 79 35 1 349 426 221 299 4.20e-22 100
Msa0824530 AT5G15130.2 48.193 83 42 1 350 431 168 250 5.55e-22 99.8
Msa0824530 AT5G15130.2 50.820 61 28 2 203 261 185 245 6.10e-11 65.5
Msa0824530 AT5G15130.1 48.193 83 42 1 350 431 210 292 6.87e-22 99.8
Msa0824530 AT5G15130.1 50.820 61 28 2 203 261 227 287 7.04e-11 65.1
Msa0824530 AT1G18860.1 52.564 78 36 1 350 426 222 299 1.47e-21 98.6
Msa0824530 AT1G18860.1 52.459 61 27 2 203 261 239 299 7.77e-11 65.1
Msa0824530 AT2G21900.1 43.878 98 50 2 336 428 73 170 7.63e-21 91.3
Msa0824530 AT2G21900.1 50.000 60 29 1 203 261 109 168 3.86e-13 68.9
Msa0824530 AT2G23320.1 51.250 80 38 1 347 425 220 299 2.70e-20 92.4
Msa0824530 AT4G31550.1 56.000 75 32 1 351 424 230 304 2.78e-20 92.4
Msa0824530 AT4G31550.2 56.000 75 32 1 351 424 229 303 2.90e-20 92.4
Msa0824530 AT4G31800.2 37.097 124 61 3 366 485 110 220 6.75e-20 89.7
Msa0824530 AT4G31800.1 37.097 124 61 3 366 485 175 285 1.64e-19 90.1
Msa0824530 AT4G24240.1 51.852 81 35 2 346 425 263 340 1.98e-19 90.5
Msa0824530 AT2G46130.2 52.632 76 32 1 348 423 11 82 2.51e-19 84.0
Msa0824530 AT2G46130.2 42.308 78 40 2 183 259 10 83 2.41e-11 61.2
Msa0824530 AT1G80840.1 41.346 104 50 2 346 438 115 218 3.35e-19 89.0
Msa0824530 AT1G80840.1 25.792 221 121 6 57 261 13 206 3.79e-12 67.8
Msa0824530 AT5G28650.1 41.346 104 49 2 331 433 237 329 3.44e-19 89.4
Msa0824530 AT5G43290.1 41.228 114 47 3 330 423 57 170 4.44e-19 87.8
Msa0824530 AT5G43290.1 47.872 94 43 3 166 258 82 170 2.31e-14 73.9
Msa0824530 AT2G30590.1 54.054 74 33 1 351 423 297 370 6.63e-19 89.4
Msa0824530 AT3G04670.1 41.346 104 49 2 331 433 237 329 7.05e-19 88.6
Msa0824530 AT4G23550.1 46.753 77 40 1 356 431 129 205 7.54e-19 87.8
Msa0824530 AT2G24570.1 55.405 74 32 1 351 423 227 300 9.10e-19 87.8
Msa0824530 AT2G25000.2 51.562 64 30 1 366 428 102 165 1.40e-18 85.5
Msa0824530 AT2G25000.4 51.562 64 30 1 366 428 102 165 1.40e-18 85.5
Msa0824530 AT2G25000.3 51.562 64 30 1 366 428 124 187 3.27e-18 84.7
Msa0824530 AT2G25000.1 51.562 64 30 1 366 428 145 208 4.52e-18 85.1
Msa0824530 AT1G69810.2 44.444 90 46 3 350 437 128 215 3.07e-17 83.6
Msa0824530 AT1G69810.2 41.892 74 40 2 201 271 143 216 1.26e-11 66.6
Msa0824530 AT1G69810.1 44.444 90 46 3 350 437 186 273 4.17e-17 84.0
Msa0824530 AT1G69810.1 41.892 74 40 2 201 271 201 274 1.34e-11 67.0
Msa0824530 AT1G29280.1 49.231 65 32 1 368 431 75 139 1.82e-16 80.1
Msa0824530 AT1G29280.1 30.909 165 107 5 191 352 66 226 2.70e-12 67.8
Msa0824530 AT4G01250.1 53.846 65 29 1 368 431 129 193 2.18e-16 80.5
Msa0824530 AT3G58710.1 49.275 69 32 2 368 433 72 140 2.75e-15 76.6
Msa0824530 AT3G58710.2 49.275 69 32 2 368 433 71 139 2.92e-15 76.6
Msa0824530 AT5G52830.1 42.683 82 45 2 351 431 150 230 3.81e-15 77.4
Msa0824530 AT5G52830.1 48.387 62 30 2 202 261 164 225 7.80e-11 64.3
Msa0824530 AT2G34830.1 47.692 65 33 1 368 431 216 280 7.50e-15 77.4
Msa0824530 AT2G34830.2 47.692 65 33 1 368 431 225 289 7.56e-15 77.4
Msa0824530 AT1G30650.1 47.692 65 33 1 368 431 218 282 1.19e-14 76.6
Msa0824530 AT5G45050.4 47.692 65 33 1 368 431 1042 1106 1.25e-13 74.7
Msa0824530 AT5G45050.2 47.692 65 33 1 368 431 1153 1217 1.27e-13 74.7
Msa0824530 AT5G45050.1 47.692 65 33 1 368 431 1181 1245 1.27e-13 74.7
Msa0824530 AT4G23810.1 50.794 63 25 3 198 256 155 215 1.07e-12 69.7
Msa0824530 AT2G46400.1 35.922 103 53 2 322 421 69 161 1.74e-12 68.9
Msa0824530 AT2G40740.1 47.059 68 29 3 193 256 166 230 1.65e-11 65.9
Msa0824530 AT2G40740.1 43.056 72 35 2 367 432 173 244 1.86e-11 65.5
Msa0824530 AT4G11070.2 36.134 119 63 5 142 256 57 166 1.94e-11 65.5
Msa0824530 AT2G40740.3 43.056 72 35 2 367 432 182 253 2.12e-11 65.5
Msa0824530 AT2G40740.3 47.059 68 29 3 193 256 175 239 2.20e-11 65.5
Msa0824530 AT3G56400.1 34.615 104 55 3 362 452 115 218 2.63e-11 65.1
Msa0824530 AT4G11070.1 36.134 119 63 5 142 256 89 198 3.23e-11 65.1
Msa0824530 AT5G24110.1 48.276 58 26 2 203 256 113 170 4.24e-11 64.7
Msa0824530 AT1G66560.1 48.276 58 27 1 367 421 103 160 4.58e-11 63.9

Find 175 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTATACAGAAGAATT+TGG 0.181653 5_3:-63856500 None:intergenic
TCGACAGACAAGAATAAAAT+TGG 0.229290 5_3:+63855929 Msa0824530:CDS
CGGTTGCTTGGTTGAGGTTT+AGG 0.244830 5_3:-63854790 None:intergenic
AAATGCTGCTATCCGAATTT+AGG 0.269734 5_3:+63856030 Msa0824530:CDS
TTCAATACCAGCACTGTTAA+TGG 0.270744 5_3:+63854196 Msa0824530:CDS
GGATACAATTGGCGAAAGTA+TGG 0.277636 5_3:+63854628 Msa0824530:CDS
CGATAACAGGGCATCTTCTT+TGG 0.279235 5_3:+63854855 Msa0824530:CDS
AACTGATTGCTCTGGACTAT+TGG 0.284827 5_3:-63854998 None:intergenic
TCAAGCTTTAAACTGTTCTA+TGG 0.285827 5_3:+63854132 Msa0824530:CDS
AATCACTGAGATAATATATA+AGG 0.289665 5_3:+63854753 Msa0824530:CDS
CACAAAGGCAACACTGCTAA+TGG 0.304713 5_3:+63854586 Msa0824530:CDS
CTCTCCACGTGTTTCCTAAC+GGG 0.326561 5_3:-63855795 None:intergenic
TTGATTGCTATTCCTAAATT+CGG 0.328818 5_3:-63856042 None:intergenic
TCGAGAGTTAAGATAGAGAT+AGG 0.328824 5_3:-63852247 None:intergenic
CATTAGCAGTGTTGCCTTTG+TGG 0.336033 5_3:-63854585 None:intergenic
TATGAGCGAAGTTGATATAT+TGG 0.356592 5_3:+63855270 Msa0824530:CDS
AAGGAGAGAGATCCGATAAC+AGG 0.368713 5_3:+63854842 Msa0824530:CDS
CCCATTGATCCGAATCGAAC+TGG 0.370192 5_3:+63852322 Msa0824530:CDS
GCAGTGTTGCCTTTGTGGTT+AGG 0.370912 5_3:-63854580 None:intergenic
ATTATGAACAAACTTGAAAC+TGG 0.377335 5_3:-63856081 None:intergenic
CCCAGTTCGATTCGGATCAA+TGG 0.381738 5_3:-63852323 None:intergenic
CAAAGAAGATGCCCTGTTAT+CGG 0.382806 5_3:-63854854 None:intergenic
TTGAAGCATGCAGAAGTTAC+AGG 0.389514 5_3:-63854178 None:intergenic
TTTGAACAGGTGATGATGAT+AGG 0.389808 5_3:-63854510 None:intergenic
AACCATGGGAAGAATACTAA+TGG 0.391787 5_3:+63856220 Msa0824530:CDS
TAAACCACAAGATAGAAATA+TGG 0.401369 5_3:+63854243 Msa0824530:CDS
AACTGTTCTATGGCTTCTGC+TGG 0.409079 5_3:+63854142 Msa0824530:CDS
TATGTTGTAATTACAGCTTT+CGG 0.411726 5_3:-63855831 None:intergenic
TCTACTCAAGTGGAAGGTTC+AGG 0.415708 5_3:+63854418 Msa0824530:CDS
GATCCGAATCGAACTGGGTC+GGG 0.420694 5_3:+63852328 Msa0824530:CDS
ACCATGGGAAGAATACTAAT+GGG 0.424995 5_3:+63856221 Msa0824530:CDS
CACTCCCGTCGATGTCAATT+CGG 0.427810 5_3:+63854552 Msa0824530:CDS
AACAGTTTAAAGCTTGAAGA+AGG 0.428892 5_3:-63854126 None:intergenic
TATCCATCATTTGATGATTG+AGG 0.434013 5_3:-63854610 None:intergenic
ATCTTCTCCATTAAATGAAA+AGG 0.439104 5_3:+63854459 Msa0824530:CDS
CTTCCCATGGTTTGTGAGCA+AGG 0.441194 5_3:-63856209 None:intergenic
CCCCATTAGTATTCTTCCCA+TGG 0.444938 5_3:-63856222 None:intergenic
GAGTATCGGTTGCTTGGTTG+AGG 0.444969 5_3:-63854796 None:intergenic
ATCATCATCACCTGTTCAAA+TGG 0.445905 5_3:+63854513 Msa0824530:CDS
ACAAAGGCAACACTGCTAAT+GGG 0.447362 5_3:+63854587 Msa0824530:CDS
TTCATGTTTGAAAGAAGAAC+CGG 0.449237 5_3:-63852463 None:intergenic
CTCGAGATCGGAAGCTTCGC+CGG 0.450239 5_3:-63852385 None:intergenic
GGATACCGCTGGCGTAAATA+CGG 0.450672 5_3:+63855298 Msa0824530:CDS
GCGAGGATATACCTTGGGTT+AGG 0.451755 5_3:-63855343 None:intergenic
TGACCCGACCCAGTTCGATT+CGG 0.453678 5_3:-63852331 None:intergenic
ATCACTGAGATAATATATAA+GGG 0.454298 5_3:+63854754 Msa0824530:CDS
CAAATGCTGGTTGCCCCGTT+AGG 0.456890 5_3:+63855781 Msa0824530:CDS
CGAGAGTTAAGATAGAGATA+GGG 0.456970 5_3:-63852246 None:intergenic
TATCCGAGAGCCACGGGTTG+TGG 0.458528 5_3:+63855240 Msa0824530:CDS
GGGTGTCCCTTCGCCGGAGT+TGG 0.461210 5_3:-63852302 None:intergenic
CATCAAATGATGGATACAAT+TGG 0.461233 5_3:+63854617 Msa0824530:CDS
GACACAAATCCAGCACCCTC+TGG 0.465364 5_3:-63855042 None:intergenic
GTTGCCACAACTGATTGCTC+TGG 0.469396 5_3:-63855006 None:intergenic
TGTCCCTTCGCCGGAGTTGG+TGG 0.471029 5_3:-63852299 None:intergenic
GTATAGTCCGACGTCGTTGT+TGG 0.471201 5_3:+63852435 Msa0824530:CDS
ATCAACCCCATCGTTTGTCC+TGG 0.471839 5_3:-63855067 None:intergenic
CCAGTTCGATTCGGATCAAT+GGG 0.472051 5_3:-63852322 None:intergenic
AACAGGGCATCTTCTTTGGC+TGG 0.474402 5_3:+63854859 Msa0824530:CDS
TCTTCTTTGGCTGGCCGAGA+TGG 0.475333 5_3:+63854868 Msa0824530:CDS
ATTGTCTTCTTTGTCAGAGA+TGG 0.478079 5_3:-63852205 None:intergenic
TATTACAAATGTACAAATGC+TGG 0.478805 5_3:+63855768 Msa0824530:CDS
CCAGCAGAGTATCGGTTGCT+TGG 0.481275 5_3:-63854802 None:intergenic
ACCACCACCAACTCCGGCGA+AGG 0.482330 5_3:+63852295 Msa0824530:CDS
GGTTCTTCTTTCAAACATGA+AGG 0.483334 5_3:+63852465 Msa0824530:CDS
AATAACGGTTCAAATCCGTT+TGG 0.484421 5_3:+63856137 Msa0824530:CDS
ATACTATTAGTCTTGACCTT+GGG 0.486591 5_3:+63855961 Msa0824530:CDS
ATGGGAATCAGCTCCACGGC+TGG 0.488519 5_3:+63855984 Msa0824530:CDS
GACGTCGTTGTTGGAGTCTC+CGG 0.489196 5_3:+63852444 Msa0824530:CDS
CCCTTCGCCGGAGTTGGTGG+TGG 0.489782 5_3:-63852296 None:intergenic
CTGGAACTAACCATTTGAAC+AGG 0.490509 5_3:-63854523 None:intergenic
AGATAGAGATAGGGGTATAA+TGG 0.492748 5_3:-63852237 None:intergenic
ATCAATGGGTGTCCCTTCGC+CGG 0.493461 5_3:-63852308 None:intergenic
GTTGAGCCTTCACCGACTAC+AGG 0.494072 5_3:+63854100 Msa0824530:CDS
ACATGGTTGTTGAAGTCTGC+AGG 0.496515 5_3:-63854385 None:intergenic
TCTAGAGAAAATAGAAATGA+TGG 0.497207 5_3:+63856161 Msa0824530:CDS
GCTGTAATTACAACATATGA+AGG 0.501085 5_3:+63855837 Msa0824530:CDS
ATTACCATATTTCTATCTTG+TGG 0.504868 5_3:-63854247 None:intergenic
AATGGAGAAGATCGAAATGA+TGG 0.509457 5_3:-63854448 None:intergenic
GATCTTAGTCCAGAGGGTGC+TGG 0.510709 5_3:+63855033 Msa0824530:CDS
TTTAGAACACCGTAGTATAC+CGG 0.512392 5_3:-63856116 None:intergenic
GATACTATTAGTCTTGACCT+TGG 0.514318 5_3:+63855960 Msa0824530:CDS
TCTCTCCACGTGTTTCCTAA+CGG 0.516675 5_3:-63855796 None:intergenic
GAAGCAACCACCACCAACTC+CGG 0.517386 5_3:+63852289 Msa0824530:CDS
ATCATACCTTTGCTTCGAGA+AGG 0.520139 5_3:-63855100 None:intergenic
CAACGACGTCGGACTATACC+CGG 0.520778 5_3:-63852431 None:intergenic
TGGCGGGTATATAGCTTCAA+AGG 0.528848 5_3:+63856292 Msa0824530:intron
ATTAGTCTTGACCTTGGGAT+GGG 0.529726 5_3:+63855966 Msa0824530:CDS
GAGAGTTAAGATAGAGATAG+GGG 0.531870 5_3:-63852245 None:intergenic
CAAGTGGAAGGTTCAGGAAA+CGG 0.532286 5_3:+63854424 Msa0824530:CDS
TATTAGTCTTGACCTTGGGA+TGG 0.534330 5_3:+63855965 Msa0824530:CDS
GTACCACAACCCGTGGCTCT+CGG 0.534490 5_3:-63855243 None:intergenic
TACTACGGTGTTCTAAATAA+CGG 0.535215 5_3:+63856122 Msa0824530:CDS
AGTAGTAGCCATGACATGGC+AGG 0.536137 5_3:+63855891 Msa0824530:CDS
GGGCCTCAATCATCAAATGA+TGG 0.539104 5_3:+63854607 Msa0824530:CDS
AATTAGATTGAAAGTCAACC+TGG 0.539594 5_3:-63856419 None:intergenic
ACGGCTGGAAATAGATCGAA+TGG 0.543020 5_3:+63855999 Msa0824530:CDS
ATTCGATCTATTTCCAGCCG+TGG 0.544228 5_3:-63855997 None:intergenic
TATAGTAGTAGTATTGATAG+TGG 0.547018 5_3:+63856394 Msa0824530:three_prime_UTR
GGTGGTTGCTTCCATTGTGA+CGG 0.547944 5_3:-63852278 None:intergenic
ATGCACGGCGACCTCGAGAT+CGG 0.549767 5_3:-63852397 None:intergenic
ACAACCCGTGGCTCTCGGAT+AGG 0.549884 5_3:-63855238 None:intergenic
CCATTGATCCGAATCGAACT+GGG 0.550113 5_3:+63852323 Msa0824530:CDS
CCAAGCAACCGATACTCTGC+TGG 0.551219 5_3:+63854802 Msa0824530:CDS
AACCCCATCGTTTGTCCTGG+TGG 0.551369 5_3:-63855064 None:intergenic
TCATACCTTTGCTTCGAGAA+GGG 0.551523 5_3:-63855099 None:intergenic
TAAGCCTATCCGAGAGCCAC+GGG 0.556300 5_3:+63855234 Msa0824530:CDS
AACAAATGATCTTAGTCCAG+AGG 0.561426 5_3:+63855026 Msa0824530:CDS
TATAATTGTTATCATCAGCA+TGG 0.565083 5_3:+63856468 Msa0824530:three_prime_UTR
GAAGTTGATATATTGGATGA+TGG 0.565114 5_3:+63855277 Msa0824530:CDS
GTGCTGGATTTGTGTCCACC+AGG 0.566635 5_3:+63855049 Msa0824530:CDS
TCATAATACTACCTCAGCTC+CGG 0.566675 5_3:+63856097 Msa0824530:CDS
TCATCCGAATTGACATCGAC+GGG 0.567171 5_3:-63854556 None:intergenic
AGGGACCCTGTAGTCGGTGA+AGG 0.567986 5_3:-63854106 None:intergenic
GATACAATTGGCGAAAGTAT+GGG 0.568812 5_3:+63854629 Msa0824530:CDS
ACAGTTTAAAGCTTGAAGAA+GGG 0.569142 5_3:-63854125 None:intergenic
TGTCCACCAGGACAAACGAT+GGG 0.571215 5_3:+63855061 Msa0824530:CDS
CGATAACATCGCCGTCACAA+TGG 0.574088 5_3:+63852267 Msa0824530:exon
GATACCGCTGGCGTAAATAC+GGG 0.574441 5_3:+63855299 Msa0824530:CDS
ATGATCCCTTCTCGAAGCAA+AGG 0.575270 5_3:+63855094 Msa0824530:CDS
AAGATACAAGCTGATGTCGC+CGG 0.575531 5_3:+63852366 Msa0824530:CDS
TGTCAGAGATGGTGAGAGAG+TGG 0.576790 5_3:-63852194 None:intergenic
CCACCACCAACTCCGGCGAA+GGG 0.580167 5_3:+63852296 Msa0824530:CDS
ACCTCAGCTCCGGTATACTA+CGG 0.581112 5_3:+63856107 Msa0824530:CDS
TGGGTCGGGTCAAAATTCAA+TGG 0.582215 5_3:+63852342 Msa0824530:CDS
GGAAATAGATCGAATGGGCA+AGG 0.582572 5_3:+63856005 Msa0824530:CDS
GTAGTATTGATAGTGGCTCC+AGG 0.587040 5_3:+63856401 Msa0824530:three_prime_UTR
TCTAGCCAGTATTACCATCT+CGG 0.587124 5_3:-63854882 None:intergenic
TCTCGGATAGGCTTAACTAC+AGG 0.589498 5_3:-63855226 None:intergenic
ATCGACGGGAGTGCTAGTGC+TGG 0.589916 5_3:-63854542 None:intergenic
TAACAGAACCAGCAGAGTAT+CGG 0.592680 5_3:-63854810 None:intergenic
CTGGCGTAAATACGGGCAGA+AGG 0.599746 5_3:+63855306 Msa0824530:CDS
GTATCCTTGCTCACAAACCA+TGG 0.602087 5_3:+63856205 Msa0824530:CDS
TTGAGCCTTCACCGACTACA+GGG 0.605193 5_3:+63854101 Msa0824530:CDS
CCGTGCATCACAATACCCGC+CGG 0.606013 5_3:+63852412 Msa0824530:CDS
GGTTTGTGAGCAAGGATACA+CGG 0.607172 5_3:-63856201 None:intergenic
TGGAGCTGATTCCCATCCCA+AGG 0.608733 5_3:-63855977 None:intergenic
GAAATAGATCGAATGGGCAA+GGG 0.610553 5_3:+63856006 Msa0824530:CDS
TTAAGCCTATCCGAGAGCCA+CGG 0.611015 5_3:+63855233 Msa0824530:CDS
CGTGCATCACAATACCCGCC+GGG 0.611416 5_3:+63852413 Msa0824530:CDS
TTGCATGTCCTGCCATGTCA+TGG 0.612210 5_3:-63855899 None:intergenic
CGGCTGGAAATAGATCGAAT+GGG 0.612520 5_3:+63856000 Msa0824530:CDS
TTCATCCGAATTGACATCGA+CGG 0.614196 5_3:-63854557 None:intergenic
TGATCCGAATCGAACTGGGT+CGG 0.615553 5_3:+63852327 Msa0824530:CDS
TATTGGATGATGGATACCGC+TGG 0.617305 5_3:+63855287 Msa0824530:CDS
CGGCGAAGCTTCCGATCTCG+AGG 0.618256 5_3:+63852386 Msa0824530:CDS
AATACGGGCAGAAGGTTGTG+AGG 0.621518 5_3:+63855314 Msa0824530:CDS
ACAAATGATCTTAGTCCAGA+GGG 0.621953 5_3:+63855027 Msa0824530:CDS
TGGCTACTACTCCTTGCGGC+AGG 0.622630 5_3:-63855879 None:intergenic
TATCCTTGCTCACAAACCAT+GGG 0.626075 5_3:+63856206 Msa0824530:CDS
ATCATGATGTACCTGCCGCA+AGG 0.626676 5_3:+63855868 Msa0824530:CDS
ATACGGGCAGAAGGTTGTGA+GGG 0.627452 5_3:+63855315 Msa0824530:CDS
AGGAGAGAGATCCGATAACA+GGG 0.627701 5_3:+63854843 Msa0824530:CDS
GTGAGCAAGGATACACGGAA+TGG 0.628351 5_3:-63856196 None:intergenic
TAGTCCAGAGCAATCAGTTG+TGG 0.629779 5_3:+63855002 Msa0824530:CDS
TGAAGAAGGGACCCTGTAGT+CGG 0.633505 5_3:-63854112 None:intergenic
AAGGAGTAGTAGCCATGACA+TGG 0.636348 5_3:+63855887 Msa0824530:CDS
GTGTCCACCAGGACAAACGA+TGG 0.638806 5_3:+63855060 Msa0824530:CDS
CCGGCGGGTATTGTGATGCA+CGG 0.645844 5_3:-63852412 None:intergenic
ACCGTAGTATACCGGAGCTG+AGG 0.648503 5_3:-63856108 None:intergenic
TGAGGGGAAATCCTAACCCA+AGG 0.652567 5_3:+63855332 Msa0824530:CDS
GTCATGGCTACTACTCCTTG+CGG 0.655788 5_3:-63855883 None:intergenic
GACGTCGGACTATACCCGGC+GGG 0.657888 5_3:-63852427 None:intergenic
TCTCCACGTGTTTCCTAACG+GGG 0.666988 5_3:-63855794 None:intergenic
TGGGATGGGAATCAGCTCCA+CGG 0.679215 5_3:+63855980 Msa0824530:CDS
CCATGGGAAGAATACTAATG+GGG 0.691385 5_3:+63856222 Msa0824530:CDS
ATAGTCTGTACCACAACCCG+TGG 0.696081 5_3:-63855250 None:intergenic
GTCCACCAGGACAAACGATG+GGG 0.699479 5_3:+63855062 Msa0824530:CDS
TTGCCCCGTTAGGAAACACG+TGG 0.701445 5_3:+63855791 Msa0824530:CDS
TCGGATGAACCTAACCACAA+AGG 0.702575 5_3:+63854571 Msa0824530:CDS
GGAGACTCCAACAACGACGT+CGG 0.702898 5_3:-63852442 None:intergenic
TCTGCCCGTATTTACGCCAG+CGG 0.703027 5_3:-63855303 None:intergenic
TACGGGCAGAAGGTTGTGAG+GGG 0.703169 5_3:+63855316 Msa0824530:CDS
GGTTCTGTTATGTCTACACA+AGG 0.712252 5_3:+63854823 Msa0824530:CDS
CGACGTCGGACTATACCCGG+CGG 0.765121 5_3:-63852428 None:intergenic
GTACATTTGTAATAGCTGCG+CGG 0.802944 5_3:-63854679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGAAAATGAAAAA+TGG + chr5_3:63852547-63852566 Msa0824530:intron 10.0%
!! AAAAATTGAAAATGAAAAAT+GGG + chr5_3:63852548-63852567 Msa0824530:intron 10.0%
!! AAAAAGTAGAAAATAAAAAA+TGG + chr5_3:63852863-63852882 Msa0824530:intron 10.0%
!! AAAAGTAGAAAATAAAAAAT+GGG + chr5_3:63852864-63852883 Msa0824530:intron 10.0%
!! ATAAGAATTTATAACTTTAT+AGG - chr5_3:63853174-63853193 None:intergenic 10.0%
!! TGAAATAAGTAATATTAAAA+TGG - chr5_3:63854923-63854942 None:intergenic 10.0%
!! TTATTTCAAAGAAAATAATT+TGG + chr5_3:63854935-63854954 Msa0824530:intron 10.0%
!! AAAAATAAATTCTTTAACAA+AGG - chr5_3:63855448-63855467 None:intergenic 10.0%
!!! ATTTTTACTTATAAATTTCA+TGG - chr5_3:63856248-63856267 None:intergenic 10.0%
!! ATAGTAAAAAATATGTACTT+TGG + chr5_3:63852521-63852540 Msa0824530:intron 15.0%
!!! TAATAATCACTTTTTGTAAT+TGG + chr5_3:63852652-63852671 Msa0824530:intron 15.0%
!!! TGTTTTTTTACTTACAATAT+GGG + chr5_3:63852701-63852720 Msa0824530:intron 15.0%
!!! ATAAAAAGATTGTATTTTGA+GGG + chr5_3:63852798-63852817 Msa0824530:intron 15.0%
!! TAATTATCACTTTCTATAAA+TGG + chr5_3:63852981-63853000 Msa0824530:intron 15.0%
!!! ATTTATAACTTTATAGGTTT+TGG - chr5_3:63853168-63853187 None:intergenic 15.0%
!!! TTTGTTTGATTTTGTTTTAA+CGG + chr5_3:63853439-63853458 Msa0824530:intron 15.0%
!!! TTTCCTTTTTTATTTGAAAT+CGG - chr5_3:63853799-63853818 None:intergenic 15.0%
!!! ATAAAAAAGGAAATATTTTC+AGG + chr5_3:63853806-63853825 Msa0824530:intron 15.0%
!! ATCTTATTATCATTCTTATT+TGG + chr5_3:63855738-63855757 Msa0824530:intron 15.0%
!! ATAATTTATACAGAAGAATT+TGG - chr5_3:63856503-63856522 None:intergenic 15.0%
!! AAAACAAAACATTCTACTTA+TGG - chr5_3:63852594-63852613 None:intergenic 20.0%
!!! AAGTAGAATGTTTTGTTTTT+TGG + chr5_3:63852595-63852614 Msa0824530:intron 20.0%
!!! CTGTTTTTTTACTTACAATA+TGG + chr5_3:63852700-63852719 Msa0824530:intron 20.0%
!!! AAATACAATCTTTTTATGAC+TGG - chr5_3:63852795-63852814 None:intergenic 20.0%
!!! CATAAAAAGATTGTATTTTG+AGG + chr5_3:63852797-63852816 Msa0824530:intron 20.0%
!!! TTGTTTTTTGTTGCTAATTT+TGG + chr5_3:63852924-63852943 Msa0824530:intron 20.0%
!! AAGTGATAATTAACTCTAAT+GGG - chr5_3:63852973-63852992 None:intergenic 20.0%
!! AAAGTGATAATTAACTCTAA+TGG - chr5_3:63852974-63852993 None:intergenic 20.0%
!! TTTGATCCTTTATGTATTAA+TGG + chr5_3:63853254-63853273 Msa0824530:intron 20.0%
!!! TAATAAATCTTCCTTTTGAT+TGG + chr5_3:63853397-63853416 Msa0824530:intron 20.0%
!!! AACTTTTCCAAGATTTTTTT+TGG + chr5_3:63853701-63853720 Msa0824530:intron 20.0%
!! ATTCCGATTTCAAATAAAAA+AGG + chr5_3:63853793-63853812 Msa0824530:intron 20.0%
!!! TTTGAAATCAGTAATAACTA+TGG - chr5_3:63853947-63853966 None:intergenic 20.0%
!!! ATAGTTATTACTGATTTCAA+AGG + chr5_3:63853946-63853965 Msa0824530:intron 20.0%
!! ACACTTTGATGAAAATAAAT+TGG + chr5_3:63854281-63854300 Msa0824530:intron 20.0%
!! AATCACTGAGATAATATATA+AGG + chr5_3:63854753-63854772 Msa0824530:CDS 20.0%
!! ATCACTGAGATAATATATAA+GGG + chr5_3:63854754-63854773 Msa0824530:CDS 20.0%
!!! TTTTTTATTGAGCAGAAAAA+TGG + chr5_3:63855180-63855199 Msa0824530:intron 20.0%
!!! TGTTTTTTTTTTAAGGACAA+AGG - chr5_3:63855420-63855439 None:intergenic 20.0%
!!! GGACATATGTTTTTTTTTTA+AGG - chr5_3:63855427-63855446 None:intergenic 20.0%
!!! TCTTAATTTGTAGTGTTTAT+TGG + chr5_3:63855467-63855486 Msa0824530:intron 20.0%
!! GTATGTTTATAATCATTGAT+GGG - chr5_3:63855675-63855694 None:intergenic 20.0%
!! TGTATGTTTATAATCATTGA+TGG - chr5_3:63855676-63855695 None:intergenic 20.0%
!!! AAAAAATCTCATTTTCTGTA+AGG + chr5_3:63856317-63856336 Msa0824530:three_prime_UTR 20.0%
! GTAAAAAATATGTACTTTGG+AGG + chr5_3:63852524-63852543 Msa0824530:intron 25.0%
! AAGTGATTATTAACTCTAGT+GGG - chr5_3:63852644-63852663 None:intergenic 25.0%
! AAAGTGATTATTAACTCTAG+TGG - chr5_3:63852645-63852664 None:intergenic 25.0%
!!! TTTTTTACTTACAATATGGG+TGG + chr5_3:63852704-63852723 Msa0824530:intron 25.0%
! TTGTGTAATTGTGTTATCTT+AGG + chr5_3:63852838-63852857 Msa0824530:intron 25.0%
! AAACAACAACATTCTACTAA+TGG - chr5_3:63852910-63852929 None:intergenic 25.0%
! AGCAGCTAAAATTGTATATA+TGG + chr5_3:63853052-63853071 Msa0824530:intron 25.0%
! GCAGCTAAAATTGTATATAT+GGG + chr5_3:63853053-63853072 Msa0824530:intron 25.0%
! CAGCTAAAATTGTATATATG+GGG + chr5_3:63853054-63853073 Msa0824530:intron 25.0%
! TCCTTTATGTATTAATGGTT+AGG + chr5_3:63853259-63853278 Msa0824530:intron 25.0%
! ACCTAACCATTAATACATAA+AGG - chr5_3:63853263-63853282 None:intergenic 25.0%
! AAAATCAATCCACTAATCAT+TGG - chr5_3:63853536-63853555 None:intergenic 25.0%
! TGCTGAAAGAATATAGTATA+AGG + chr5_3:63853565-63853584 Msa0824530:intron 25.0%
! TGTCATAAAGATATGTGAAA+AGG + chr5_3:63853590-63853609 Msa0824530:intron 25.0%
! ATTCTGTGCTATATTCATAT+TGG + chr5_3:63853675-63853694 Msa0824530:intron 25.0%
! CTTGTAACCAAAAAAAATCT+TGG - chr5_3:63853711-63853730 None:intergenic 25.0%
! TTTGTTTATGCTCAATTGTA+GGG + chr5_3:63853842-63853861 Msa0824530:intron 25.0%
!!! AATCTATACTAGGTTGTTTT+TGG + chr5_3:63853889-63853908 Msa0824530:intron 25.0%
! TAATACTAAACTACAATGCT+CGG - chr5_3:63854060-63854079 None:intergenic 25.0%
! TAAACCACAAGATAGAAATA+TGG + chr5_3:63854243-63854262 Msa0824530:CDS 25.0%
!! ATTACCATATTTCTATCTTG+TGG - chr5_3:63854250-63854269 None:intergenic 25.0%
! TTAAAATGAGTGAATAGCAT+TGG - chr5_3:63854361-63854380 None:intergenic 25.0%
!! AATGCTATTCACTCATTTTA+AGG + chr5_3:63854360-63854379 Msa0824530:intron 25.0%
! ATCTTCTCCATTAAATGAAA+AGG + chr5_3:63854459-63854478 Msa0824530:CDS 25.0%
!! AAGCAAAGGTATGATAATTA+AGG + chr5_3:63855108-63855127 Msa0824530:intron 25.0%
! ACAAAGGACATATGTTAAAT+TGG - chr5_3:63855404-63855423 None:intergenic 25.0%
! TATAAACATACACTAACACA+TGG + chr5_3:63855684-63855703 Msa0824530:intron 25.0%
!! TATTATCATTCTTATTTGGC+AGG + chr5_3:63855742-63855761 Msa0824530:intron 25.0%
! TATTACAAATGTACAAATGC+TGG + chr5_3:63855768-63855787 Msa0824530:CDS 25.0%
! TATGTTGTAATTACAGCTTT+CGG - chr5_3:63855834-63855853 None:intergenic 25.0%
!! TTGATTGCTATTCCTAAATT+CGG - chr5_3:63856045-63856064 None:intergenic 25.0%
! ATTATGAACAAACTTGAAAC+TGG - chr5_3:63856084-63856103 None:intergenic 25.0%
! TCTAGAGAAAATAGAAATGA+TGG + chr5_3:63856161-63856180 Msa0824530:CDS 25.0%
!!! TATAGTAGTAGTATTGATAG+TGG + chr5_3:63856394-63856413 Msa0824530:three_prime_UTR 25.0%
! TATAATTGTTATCATCAGCA+TGG + chr5_3:63856468-63856487 Msa0824530:three_prime_UTR 25.0%
TTCATGTTTGAAAGAAGAAC+CGG - chr5_3:63852466-63852485 None:intergenic 30.0%
! TCAGTTTTCGAAGTGTAATT+TGG + chr5_3:63852488-63852507 Msa0824530:intron 30.0%
!! TTTTGAGGGAGAATTTTCAA+AGG + chr5_3:63852812-63852831 Msa0824530:intron 30.0%
! TTTGAGGGAGAATTTTCAAA+GGG + chr5_3:63852813-63852832 Msa0824530:intron 30.0%
CTAAAATTGTATATATGGGG+TGG + chr5_3:63853057-63853076 Msa0824530:intron 30.0%
CTTCCAAAAGATAACATTTG+AGG - chr5_3:63853092-63853111 None:intergenic 30.0%
! CTCAAATGTTATCTTTTGGA+AGG + chr5_3:63853090-63853109 Msa0824530:intron 30.0%
! TGTGCCTTAGAATTTTGTAT+TGG + chr5_3:63853292-63853311 Msa0824530:intron 30.0%
GCATCCAATACAAAATTCTA+AGG - chr5_3:63853299-63853318 None:intergenic 30.0%
GCTTAAACACTGTATTATGT+TGG + chr5_3:63853324-63853343 Msa0824530:intron 30.0%
TAGAAGAATCCAGATGTTAA+TGG + chr5_3:63853624-63853643 Msa0824530:intron 30.0%
ACAGATTAAGACCATTATTC+AGG - chr5_3:63853650-63853669 None:intergenic 30.0%
! CTTTGTTTATGCTCAATTGT+AGG + chr5_3:63853841-63853860 Msa0824530:intron 30.0%
CTTGCTGATAAATCTATACT+AGG + chr5_3:63853879-63853898 Msa0824530:intron 30.0%
! CAGATGATTTTGTATATGCT+CGG + chr5_3:63853918-63853937 Msa0824530:intron 30.0%
!! TCAATTGATTGCTGTTTGTT+TGG + chr5_3:63853969-63853988 Msa0824530:intron 30.0%
!! CAATTGATTGCTGTTTGTTT+GGG + chr5_3:63853970-63853989 Msa0824530:intron 30.0%
!! AATTGATTGCTGTTTGTTTG+GGG + chr5_3:63853971-63853990 Msa0824530:intron 30.0%
TATTTGTTTCATTGCTTTGC+AGG + chr5_3:63854078-63854097 Msa0824530:intron 30.0%
! ACAGTTTAAAGCTTGAAGAA+GGG - chr5_3:63854128-63854147 None:intergenic 30.0%
! AACAGTTTAAAGCTTGAAGA+AGG - chr5_3:63854129-63854148 None:intergenic 30.0%
!! TCAAGCTTTAAACTGTTCTA+TGG + chr5_3:63854132-63854151 Msa0824530:CDS 30.0%
! GCTATCTCCTTTTCATTTAA+TGG - chr5_3:63854469-63854488 None:intergenic 30.0%
! TATCCATCATTTGATGATTG+AGG - chr5_3:63854613-63854632 None:intergenic 30.0%
!! CATCAAATGATGGATACAAT+TGG + chr5_3:63854617-63854636 Msa0824530:CDS 30.0%
TATGGGCAAAAACATGTTAA+AGG + chr5_3:63854646-63854665 Msa0824530:CDS 30.0%
ATGGGCAAAAACATGTTAAA+GGG + chr5_3:63854647-63854666 Msa0824530:CDS 30.0%
!!! AGTTTTTTCACTTCACAGTT+AGG - chr5_3:63854709-63854728 None:intergenic 30.0%
ATAATTAAGGCCAAATGTCT+AGG + chr5_3:63855121-63855140 Msa0824530:intron 30.0%
TAATTAAGGCCAAATGTCTA+GGG + chr5_3:63855122-63855141 Msa0824530:intron 30.0%
!! TATGAGCGAAGTTGATATAT+TGG + chr5_3:63855270-63855289 Msa0824530:CDS 30.0%
!! GAAGTTGATATATTGGATGA+TGG + chr5_3:63855277-63855296 Msa0824530:CDS 30.0%
TTATTTCCTAATTTCATGCG+AGG - chr5_3:63855363-63855382 None:intergenic 30.0%
GCTGTAATTACAACATATGA+AGG + chr5_3:63855837-63855856 Msa0824530:CDS 30.0%
TCGACAGACAAGAATAAAAT+TGG + chr5_3:63855929-63855948 Msa0824530:CDS 30.0%
!! ATACTATTAGTCTTGACCTT+GGG + chr5_3:63855961-63855980 Msa0824530:CDS 30.0%
! TACTACGGTGTTCTAAATAA+CGG + chr5_3:63856122-63856141 Msa0824530:CDS 30.0%
!!! CTATTTTCTCTAGAACCAAA+CGG - chr5_3:63856155-63856174 None:intergenic 30.0%
!!! AGTAGCATTGTGTTGTTTTT+TGG + chr5_3:63856272-63856291 Msa0824530:intron 30.0%
AATTAGATTGAAAGTCAACC+TGG - chr5_3:63856422-63856441 None:intergenic 30.0%
ATTGTCTTCTTTGTCAGAGA+TGG - chr5_3:63852208-63852227 None:intergenic 35.0%
! AGATAGAGATAGGGGTATAA+TGG - chr5_3:63852240-63852259 None:intergenic 35.0%
GAGAGTTAAGATAGAGATAG+GGG - chr5_3:63852248-63852267 None:intergenic 35.0%
CGAGAGTTAAGATAGAGATA+GGG - chr5_3:63852249-63852268 None:intergenic 35.0%
TCGAGAGTTAAGATAGAGAT+AGG - chr5_3:63852250-63852269 None:intergenic 35.0%
GGTTCTTCTTTCAAACATGA+AGG + chr5_3:63852465-63852484 Msa0824530:CDS 35.0%
! TTTCGAAGTGTAATTTGGTG+AGG + chr5_3:63852493-63852512 Msa0824530:intron 35.0%
! TTCGAAGTGTAATTTGGTGA+GGG + chr5_3:63852494-63852513 Msa0824530:intron 35.0%
!! TGGTCTCAAATCTTAGCTTT+TGG + chr5_3:63852731-63852750 Msa0824530:intron 35.0%
!! GGTCTCAAATCTTAGCTTTT+GGG + chr5_3:63852732-63852751 Msa0824530:intron 35.0%
! TGGCCTCAAATGTTATCTTT+TGG + chr5_3:63853086-63853105 Msa0824530:intron 35.0%
!!! TCTTCCTTTTGATTGGTTTC+TGG + chr5_3:63853404-63853423 Msa0824530:intron 35.0%
!! TTGTTTTGTACTGCACTAAG+TGG + chr5_3:63853489-63853508 Msa0824530:intron 35.0%
AATGCTTTGCCAATGATTAG+TGG + chr5_3:63853524-63853543 Msa0824530:intron 35.0%
TTATTCAGGCCATTAACATC+TGG - chr5_3:63853636-63853655 None:intergenic 35.0%
GATGTTAATGGCCTGAATAA+TGG + chr5_3:63853636-63853655 Msa0824530:intron 35.0%
!! ATTGATTGCTGTTTGTTTGG+GGG + chr5_3:63853972-63853991 Msa0824530:intron 35.0%
TTCAATACCAGCACTGTTAA+TGG + chr5_3:63854196-63854215 Msa0824530:CDS 35.0%
! GAGTAGATTTTTCGCTTACA+TGG - chr5_3:63854405-63854424 None:intergenic 35.0%
AAGCGAAAAATCTACTCAAG+TGG + chr5_3:63854408-63854427 Msa0824530:CDS 35.0%
GAAAAATCTACTCAAGTGGA+AGG + chr5_3:63854412-63854431 Msa0824530:CDS 35.0%
AATGGAGAAGATCGAAATGA+TGG - chr5_3:63854451-63854470 None:intergenic 35.0%
! TTTGAACAGGTGATGATGAT+AGG - chr5_3:63854513-63854532 None:intergenic 35.0%
ATCATCATCACCTGTTCAAA+TGG + chr5_3:63854513-63854532 Msa0824530:CDS 35.0%
! GATACAATTGGCGAAAGTAT+GGG + chr5_3:63854629-63854648 Msa0824530:CDS 35.0%
AACAAATGATCTTAGTCCAG+AGG + chr5_3:63855026-63855045 Msa0824530:CDS 35.0%
ACAAATGATCTTAGTCCAGA+GGG + chr5_3:63855027-63855046 Msa0824530:CDS 35.0%
TTGAGCAGAAAAATGGAACT+CGG + chr5_3:63855187-63855206 Msa0824530:intron 35.0%
GTATATCCTCGCATGAAATT+AGG + chr5_3:63855354-63855373 Msa0824530:intron 35.0%
CAAGAGATTGTAACGCAAAT+TGG - chr5_3:63855515-63855534 None:intergenic 35.0%
TTGAAGCTTCAACAAAATCG+CGG + chr5_3:63855628-63855647 Msa0824530:intron 35.0%
!! TGATGGGTTTGACGAAATTA+CGG - chr5_3:63855659-63855678 None:intergenic 35.0%
!! GATACTATTAGTCTTGACCT+TGG + chr5_3:63855960-63855979 Msa0824530:CDS 35.0%
AAATGCTGCTATCCGAATTT+AGG + chr5_3:63856030-63856049 Msa0824530:CDS 35.0%
! TTTAGAACACCGTAGTATAC+CGG - chr5_3:63856119-63856138 None:intergenic 35.0%
AATAACGGTTCAAATCCGTT+TGG + chr5_3:63856137-63856156 Msa0824530:CDS 35.0%
AACCATGGGAAGAATACTAA+TGG + chr5_3:63856220-63856239 Msa0824530:CDS 35.0%
ACCATGGGAAGAATACTAAT+GGG + chr5_3:63856221-63856240 Msa0824530:CDS 35.0%
!!! AGCATTGTGTTGTTTTTTGG+CGG + chr5_3:63856275-63856294 Msa0824530:intron 35.0%
AATTCGACACGAGACTAAAC+AGG - chr5_3:63853203-63853222 None:intergenic 40.0%
GAAGCCAGAAACCAATCAAA+AGG - chr5_3:63853411-63853430 None:intergenic 40.0%
TTGAAGCATGCAGAAGTTAC+AGG - chr5_3:63854181-63854200 None:intergenic 40.0%
! TTTTCTGCCATTAACAGTGC+TGG - chr5_3:63854206-63854225 None:intergenic 40.0%
CTGGAACTAACCATTTGAAC+AGG - chr5_3:63854526-63854545 None:intergenic 40.0%
TTCATCCGAATTGACATCGA+CGG - chr5_3:63854560-63854579 None:intergenic 40.0%
ACAAAGGCAACACTGCTAAT+GGG + chr5_3:63854587-63854606 Msa0824530:CDS 40.0%
GGATACAATTGGCGAAAGTA+TGG + chr5_3:63854628-63854647 Msa0824530:CDS 40.0%
GTACATTTGTAATAGCTGCG+CGG - chr5_3:63854682-63854701 None:intergenic 40.0%
! CTTTTTGAACGCTCTCATGA+TGG + chr5_3:63854727-63854746 Msa0824530:CDS 40.0%
TAACAGAACCAGCAGAGTAT+CGG - chr5_3:63854813-63854832 None:intergenic 40.0%
GGTTCTGTTATGTCTACACA+AGG + chr5_3:63854823-63854842 Msa0824530:CDS 40.0%
CAAAGAAGATGCCCTGTTAT+CGG - chr5_3:63854857-63854876 None:intergenic 40.0%
TCTAGCCAGTATTACCATCT+CGG - chr5_3:63854885-63854904 None:intergenic 40.0%
! AACTGATTGCTCTGGACTAT+TGG - chr5_3:63855001-63855020 None:intergenic 40.0%
TCATACCTTTGCTTCGAGAA+GGG - chr5_3:63855102-63855121 None:intergenic 40.0%
ATCATACCTTTGCTTCGAGA+AGG - chr5_3:63855103-63855122 None:intergenic 40.0%
CTGAAGAAACCCTAGACATT+TGG - chr5_3:63855134-63855153 None:intergenic 40.0%
TTCATGCGAGGATATACCTT+GGG - chr5_3:63855351-63855370 None:intergenic 40.0%
TTTCATGCGAGGATATACCT+TGG - chr5_3:63855352-63855371 None:intergenic 40.0%
!! TATTAGTCTTGACCTTGGGA+TGG + chr5_3:63855965-63855984 Msa0824530:CDS 40.0%
!! ATTAGTCTTGACCTTGGGAT+GGG + chr5_3:63855966-63855985 Msa0824530:CDS 40.0%
GAAATAGATCGAATGGGCAA+GGG + chr5_3:63856006-63856025 Msa0824530:CDS 40.0%
TCATAATACTACCTCAGCTC+CGG + chr5_3:63856097-63856116 Msa0824530:CDS 40.0%
TATCCTTGCTCACAAACCAT+GGG + chr5_3:63856206-63856225 Msa0824530:CDS 40.0%
CCATGGGAAGAATACTAATG+GGG + chr5_3:63856222-63856241 Msa0824530:CDS 40.0%
!!! GCATTGTGTTGTTTTTTGGC+GGG + chr5_3:63856276-63856295 Msa0824530:intron 40.0%
!! CCAGTTCGATTCGGATCAAT+GGG - chr5_3:63852325-63852344 None:intergenic 45.0%
CCATTGATCCGAATCGAACT+GGG + chr5_3:63852323-63852342 Msa0824530:CDS 45.0%
TGGGTCGGGTCAAAATTCAA+TGG + chr5_3:63852342-63852361 Msa0824530:CDS 45.0%
AAGATACAAGCTGATGTCGC+CGG + chr5_3:63852366-63852385 Msa0824530:CDS 45.0%
CTTACAATATGGGTGGTGAG+TGG + chr5_3:63852711-63852730 Msa0824530:intron 45.0%
TATATATGGGGTGGTGTGAG+TGG + chr5_3:63853066-63853085 Msa0824530:intron 45.0%
TTATCAGCAAGCAATGCGAG+CGG - chr5_3:63853870-63853889 None:intergenic 45.0%
! TGCTGTTTGTTTGGGGGTTT+AGG + chr5_3:63853978-63853997 Msa0824530:intron 45.0%
GCTGTTTGTTTGGGGGTTTA+GGG + chr5_3:63853979-63853998 Msa0824530:intron 45.0%
AACTGTTCTATGGCTTCTGC+TGG + chr5_3:63854142-63854161 Msa0824530:CDS 45.0%
ACATGGTTGTTGAAGTCTGC+AGG - chr5_3:63854388-63854407 None:intergenic 45.0%
TCTACTCAAGTGGAAGGTTC+AGG + chr5_3:63854418-63854437 Msa0824530:CDS 45.0%
CAAGTGGAAGGTTCAGGAAA+CGG + chr5_3:63854424-63854443 Msa0824530:CDS 45.0%
TCATCCGAATTGACATCGAC+GGG - chr5_3:63854559-63854578 None:intergenic 45.0%
TCGGATGAACCTAACCACAA+AGG + chr5_3:63854571-63854590 Msa0824530:CDS 45.0%
CATTAGCAGTGTTGCCTTTG+TGG - chr5_3:63854588-63854607 None:intergenic 45.0%
CACAAAGGCAACACTGCTAA+TGG + chr5_3:63854586-63854605 Msa0824530:CDS 45.0%
GGGCCTCAATCATCAAATGA+TGG + chr5_3:63854607-63854626 Msa0824530:CDS 45.0%
AAGGAGAGAGATCCGATAAC+AGG + chr5_3:63854842-63854861 Msa0824530:CDS 45.0%
AGGAGAGAGATCCGATAACA+GGG + chr5_3:63854843-63854862 Msa0824530:CDS 45.0%
! CGATAACAGGGCATCTTCTT+TGG + chr5_3:63854855-63854874 Msa0824530:CDS 45.0%
TAGTCCAGAGCAATCAGTTG+TGG + chr5_3:63855002-63855021 Msa0824530:CDS 45.0%
ATGATCCCTTCTCGAAGCAA+AGG + chr5_3:63855094-63855113 Msa0824530:CDS 45.0%
GTGTGCTTGCTTTCTCACAA+TGG + chr5_3:63855157-63855176 Msa0824530:intron 45.0%
TCTCGGATAGGCTTAACTAC+AGG - chr5_3:63855229-63855248 None:intergenic 45.0%
!! TATTGGATGATGGATACCGC+TGG + chr5_3:63855287-63855306 Msa0824530:CDS 45.0%
TGGGTTTGACGAAATTACGG+TGG - chr5_3:63855656-63855675 None:intergenic 45.0%
TCTCTCCACGTGTTTCCTAA+CGG - chr5_3:63855799-63855818 None:intergenic 45.0%
AAGGAGTAGTAGCCATGACA+TGG + chr5_3:63855887-63855906 Msa0824530:CDS 45.0%
ATTCGATCTATTTCCAGCCG+TGG - chr5_3:63856000-63856019 None:intergenic 45.0%
ACGGCTGGAAATAGATCGAA+TGG + chr5_3:63855999-63856018 Msa0824530:CDS 45.0%
CGGCTGGAAATAGATCGAAT+GGG + chr5_3:63856000-63856019 Msa0824530:CDS 45.0%
GGAAATAGATCGAATGGGCA+AGG + chr5_3:63856005-63856024 Msa0824530:CDS 45.0%
GGTTTGTGAGCAAGGATACA+CGG - chr5_3:63856204-63856223 None:intergenic 45.0%
GTATCCTTGCTCACAAACCA+TGG + chr5_3:63856205-63856224 Msa0824530:CDS 45.0%
CCCCATTAGTATTCTTCCCA+TGG - chr5_3:63856225-63856244 None:intergenic 45.0%
! TGGCGGGTATATAGCTTCAA+AGG + chr5_3:63856292-63856311 Msa0824530:intron 45.0%
!! GTAGTATTGATAGTGGCTCC+AGG + chr5_3:63856401-63856420 Msa0824530:three_prime_UTR 45.0%
TGTCAGAGATGGTGAGAGAG+TGG - chr5_3:63852197-63852216 None:intergenic 50.0%
CGATAACATCGCCGTCACAA+TGG + chr5_3:63852267-63852286 Msa0824530:exon 50.0%
GGTGGTTGCTTCCATTGTGA+CGG - chr5_3:63852281-63852300 None:intergenic 50.0%
CCCATTGATCCGAATCGAAC+TGG + chr5_3:63852322-63852341 Msa0824530:CDS 50.0%
!! CCCAGTTCGATTCGGATCAA+TGG - chr5_3:63852326-63852345 None:intergenic 50.0%
TGATCCGAATCGAACTGGGT+CGG + chr5_3:63852327-63852346 Msa0824530:CDS 50.0%
GTATAGTCCGACGTCGTTGT+TGG + chr5_3:63852435-63852454 Msa0824530:CDS 50.0%
! TTGAGCCTTCACCGACTACA+GGG + chr5_3:63854101-63854120 Msa0824530:CDS 50.0%
TGAAGAAGGGACCCTGTAGT+CGG - chr5_3:63854115-63854134 None:intergenic 50.0%
CACTCCCGTCGATGTCAATT+CGG + chr5_3:63854552-63854571 Msa0824530:CDS 50.0%
GCAGTGTTGCCTTTGTGGTT+AGG - chr5_3:63854583-63854602 None:intergenic 50.0%
CGGTTGCTTGGTTGAGGTTT+AGG - chr5_3:63854793-63854812 None:intergenic 50.0%
!! GAGTATCGGTTGCTTGGTTG+AGG - chr5_3:63854799-63854818 None:intergenic 50.0%
! AACAGGGCATCTTCTTTGGC+TGG + chr5_3:63854859-63854878 Msa0824530:CDS 50.0%
GTTGCCACAACTGATTGCTC+TGG - chr5_3:63855009-63855028 None:intergenic 50.0%
TGTCCACCAGGACAAACGAT+GGG + chr5_3:63855061-63855080 Msa0824530:CDS 50.0%
ATCAACCCCATCGTTTGTCC+TGG - chr5_3:63855070-63855089 None:intergenic 50.0%
TTAAGCCTATCCGAGAGCCA+CGG + chr5_3:63855233-63855252 Msa0824530:CDS 50.0%
ATAGTCTGTACCACAACCCG+TGG - chr5_3:63855253-63855272 None:intergenic 50.0%
GGATACCGCTGGCGTAAATA+CGG + chr5_3:63855298-63855317 Msa0824530:CDS 50.0%
GATACCGCTGGCGTAAATAC+GGG + chr5_3:63855299-63855318 Msa0824530:CDS 50.0%
AATACGGGCAGAAGGTTGTG+AGG + chr5_3:63855314-63855333 Msa0824530:CDS 50.0%
ATACGGGCAGAAGGTTGTGA+GGG + chr5_3:63855315-63855334 Msa0824530:CDS 50.0%
TGAGGGGAAATCCTAACCCA+AGG + chr5_3:63855332-63855351 Msa0824530:CDS 50.0%
GCGAGGATATACCTTGGGTT+AGG - chr5_3:63855346-63855365 None:intergenic 50.0%
ACATGCACTTAGTCAGCAGC+AGG - chr5_3:63855608-63855627 None:intergenic 50.0%
TCTCCACGTGTTTCCTAACG+GGG - chr5_3:63855797-63855816 None:intergenic 50.0%
CTCTCCACGTGTTTCCTAAC+GGG - chr5_3:63855798-63855817 None:intergenic 50.0%
ATCATGATGTACCTGCCGCA+AGG + chr5_3:63855868-63855887 Msa0824530:CDS 50.0%
GTCATGGCTACTACTCCTTG+CGG - chr5_3:63855886-63855905 None:intergenic 50.0%
AGTAGTAGCCATGACATGGC+AGG + chr5_3:63855891-63855910 Msa0824530:CDS 50.0%
TTGCATGTCCTGCCATGTCA+TGG - chr5_3:63855902-63855921 None:intergenic 50.0%
ACCTCAGCTCCGGTATACTA+CGG + chr5_3:63856107-63856126 Msa0824530:CDS 50.0%
GTGAGCAAGGATACACGGAA+TGG - chr5_3:63856199-63856218 None:intergenic 50.0%
! CTTCCCATGGTTTGTGAGCA+AGG - chr5_3:63856212-63856231 None:intergenic 50.0%
GAAGCAACCACCACCAACTC+CGG + chr5_3:63852289-63852308 Msa0824530:CDS 55.0%
ATCAATGGGTGTCCCTTCGC+CGG - chr5_3:63852311-63852330 None:intergenic 55.0%
GATCCGAATCGAACTGGGTC+GGG + chr5_3:63852328-63852347 Msa0824530:CDS 55.0%
TGACCCGACCCAGTTCGATT+CGG - chr5_3:63852334-63852353 None:intergenic 55.0%
CAACGACGTCGGACTATACC+CGG - chr5_3:63852434-63852453 None:intergenic 55.0%
GGAGACTCCAACAACGACGT+CGG - chr5_3:63852445-63852464 None:intergenic 55.0%
GACGTCGTTGTTGGAGTCTC+CGG + chr5_3:63852444-63852463 Msa0824530:CDS 55.0%
! GTTGAGCCTTCACCGACTAC+AGG + chr5_3:63854100-63854119 Msa0824530:CDS 55.0%
!! CCAGCAGAGTATCGGTTGCT+TGG - chr5_3:63854805-63854824 None:intergenic 55.0%
CCAAGCAACCGATACTCTGC+TGG + chr5_3:63854802-63854821 Msa0824530:CDS 55.0%
! TCTTCTTTGGCTGGCCGAGA+TGG + chr5_3:63854868-63854887 Msa0824530:CDS 55.0%
GCTGGCCGAGATGGTAATAC+TGG + chr5_3:63854877-63854896 Msa0824530:intron 55.0%
! GATCTTAGTCCAGAGGGTGC+TGG + chr5_3:63855033-63855052 Msa0824530:CDS 55.0%
GACACAAATCCAGCACCCTC+TGG - chr5_3:63855045-63855064 None:intergenic 55.0%
GTGCTGGATTTGTGTCCACC+AGG + chr5_3:63855049-63855068 Msa0824530:CDS 55.0%
GTGTCCACCAGGACAAACGA+TGG + chr5_3:63855060-63855079 Msa0824530:CDS 55.0%
GTCCACCAGGACAAACGATG+GGG + chr5_3:63855062-63855081 Msa0824530:CDS 55.0%
AACCCCATCGTTTGTCCTGG+TGG - chr5_3:63855067-63855086 None:intergenic 55.0%
TAAGCCTATCCGAGAGCCAC+GGG + chr5_3:63855234-63855253 Msa0824530:CDS 55.0%
TCTGCCCGTATTTACGCCAG+CGG - chr5_3:63855306-63855325 None:intergenic 55.0%
CTGGCGTAAATACGGGCAGA+AGG + chr5_3:63855306-63855325 Msa0824530:CDS 55.0%
TACGGGCAGAAGGTTGTGAG+GGG + chr5_3:63855316-63855335 Msa0824530:CDS 55.0%
! CAAATGCTGGTTGCCCCGTT+AGG + chr5_3:63855781-63855800 Msa0824530:CDS 55.0%
TTGCCCCGTTAGGAAACACG+TGG + chr5_3:63855791-63855810 Msa0824530:CDS 55.0%
! TGGAGCTGATTCCCATCCCA+AGG - chr5_3:63855980-63855999 None:intergenic 55.0%
TGGGATGGGAATCAGCTCCA+CGG + chr5_3:63855980-63855999 Msa0824530:CDS 55.0%
ACCGTAGTATACCGGAGCTG+AGG - chr5_3:63856111-63856130 None:intergenic 55.0%
CTCGAGATCGGAAGCTTCGC+CGG - chr5_3:63852388-63852407 None:intergenic 60.0%
ATGCACGGCGACCTCGAGAT+CGG - chr5_3:63852400-63852419 None:intergenic 60.0%
! CCGGCGGGTATTGTGATGCA+CGG - chr5_3:63852415-63852434 None:intergenic 60.0%
CCGTGCATCACAATACCCGC+CGG + chr5_3:63852412-63852431 Msa0824530:CDS 60.0%
CGTGCATCACAATACCCGCC+GGG + chr5_3:63852413-63852432 Msa0824530:CDS 60.0%
AGGGACCCTGTAGTCGGTGA+AGG - chr5_3:63854109-63854128 None:intergenic 60.0%
!! ATCGACGGGAGTGCTAGTGC+TGG - chr5_3:63854545-63854564 None:intergenic 60.0%
ACAACCCGTGGCTCTCGGAT+AGG - chr5_3:63855241-63855260 None:intergenic 60.0%
! TATCCGAGAGCCACGGGTTG+TGG + chr5_3:63855240-63855259 Msa0824530:CDS 60.0%
GTACCACAACCCGTGGCTCT+CGG - chr5_3:63855246-63855265 None:intergenic 60.0%
TGGCTACTACTCCTTGCGGC+AGG - chr5_3:63855882-63855901 None:intergenic 60.0%
ATGGGAATCAGCTCCACGGC+TGG + chr5_3:63855984-63856003 Msa0824530:CDS 60.0%
ACCACCACCAACTCCGGCGA+AGG + chr5_3:63852295-63852314 Msa0824530:CDS 65.0%
CCACCACCAACTCCGGCGAA+GGG + chr5_3:63852296-63852315 Msa0824530:CDS 65.0%
TGTCCCTTCGCCGGAGTTGG+TGG - chr5_3:63852302-63852321 None:intergenic 65.0%
CGGCGAAGCTTCCGATCTCG+AGG + chr5_3:63852386-63852405 Msa0824530:CDS 65.0%
GACGTCGGACTATACCCGGC+GGG - chr5_3:63852430-63852449 None:intergenic 65.0%
CGACGTCGGACTATACCCGG+CGG - chr5_3:63852431-63852450 None:intergenic 65.0%
!! CCCTTCGCCGGAGTTGGTGG+TGG - chr5_3:63852299-63852318 None:intergenic 70.0%
GGGTGTCCCTTCGCCGGAGT+TGG - chr5_3:63852305-63852324 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 63852090 63856524 63852090 ID=Msa0824530;Name=Msa0824530
chr5_3 mRNA 63852090 63856524 63852090 ID=Msa0824530-mRNA-1;Parent=Msa0824530;Name=Msa0824530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=196|1|1|1|0.83|0.71|7|236|548
chr5_3 exon 63852090 63852486 63852090 ID=Msa0824530-mRNA-1:exon:19925;Parent=Msa0824530-mRNA-1
chr5_3 exon 63854100 63854264 63854100 ID=Msa0824530-mRNA-1:exon:19926;Parent=Msa0824530-mRNA-1
chr5_3 exon 63854382 63854889 63854382 ID=Msa0824530-mRNA-1:exon:19927;Parent=Msa0824530-mRNA-1
chr5_3 exon 63854989 63855115 63854989 ID=Msa0824530-mRNA-1:exon:19928;Parent=Msa0824530-mRNA-1
chr5_3 exon 63855195 63855353 63855195 ID=Msa0824530-mRNA-1:exon:19929;Parent=Msa0824530-mRNA-1
chr5_3 exon 63855764 63856259 63855764 ID=Msa0824530-mRNA-1:exon:19930;Parent=Msa0824530-mRNA-1
chr5_3 exon 63856298 63856524 63856298 ID=Msa0824530-mRNA-1:exon:19931;Parent=Msa0824530-mRNA-1
chr5_3 five_prime_UTR 63852090 63852285 63852090 ID=Msa0824530-mRNA-1:five_prime_utr;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63852286 63852486 63852286 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63854100 63854264 63854100 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63854382 63854889 63854382 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63854989 63855115 63854989 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63855195 63855353 63855195 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 CDS 63855764 63856250 63855764 ID=Msa0824530-mRNA-1:cds;Parent=Msa0824530-mRNA-1
chr5_3 three_prime_UTR 63856251 63856259 63856251 ID=Msa0824530-mRNA-1:three_prime_utr;Parent=Msa0824530-mRNA-1
chr5_3 three_prime_UTR 63856298 63856524 63856298 ID=Msa0824530-mRNA-1:three_prime_utr;Parent=Msa0824530-mRNA-1
Gene Sequence

>Msa0824530

ATGGAAGCAACCACCACCAACTCCGGCGAAGGGACACCCATTGATCCGAATCGAACTGGGTCGGGTCAAAATTCAATGGCAAGATACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACAATACCCGCCGGGTATAGTCCGACGTCGTTGTTGGAGTCTCCGGTTCTTCTTTCAAACATGAAGGTTGAGCCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTAAACTGTTCTATGGCTTCTGCTGGTTCTGCTACATTTCCTGTAACTTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATCAAGTTTCTTTGAGTTTAAACCACAAGATAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGCGAAAAATCTACTCAAGTGGAAGGTTCAGGAAACGGTCCATCATTTCGATCTTCTCCATTAAATGAAAAGGAGATAGCAGATCAATCTAATGAATTAAGCCTATCATCATCACCTGTTCAAATGGTTAGTTCCAGCACTAGCACTCCCGTCGATGTCAATTCGGATGAACCTAACCACAAAGGCAACACTGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAGTTTCCGCGCAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATATATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAACCGATACTCTGCTGGTTCTGTTATGTCTACACAAGGAGAGAGATCCGATAACAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGCATCCAATAGTCCAGAGCAATCAGTTGTGGCAACAAATGATCTTAGTCCAGAGGGTGCTGGATTTGTGTCCACCAGGACAAACGATGGGGTTGATGAAGATGATCCCTTCTCGAAGCAAAGAAAAATGGAACTCGGAAATGCTGACATCATTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTTGTGGTACAGACTATGAGCGAAGTTGATATATTGGATGATGGATACCGCTGGCGTAAATACGGGCAGAAGGTTGTGAGGGGAAATCCTAACCCAAGGAGTTATTACAAATGTACAAATGCTGGTTGCCCCGTTAGGAAACACGTGGAGAGAGCATCACATGATCCGAAAGCTGTAATTACAACATATGAAGGCAAACACAATCATGATGTACCTGCCGCAAGGAGTAGTAGCCATGACATGGCAGGACATGCAACTTCATTTCGACAGACAAGAATAAAATTGGAAGAAAATGATACTATTAGTCTTGACCTTGGGATGGGAATCAGCTCCACGGCTGGAAATAGATCGAATGGGCAAGGGAAAATGCTGCTATCCGAATTTAGGAATAGCAATCAAACTCACACAAGCAATTCCAGTTTCAAGTTTGTTCATAATACTACCTCAGCTCCGGTATACTACGGTGTTCTAAATAACGGTTCAAATCCGTTTGGTTCTAGAGAAAATAGAAATGATGGTTCGTCTTTAAACCATTCCGTGTATCCTTGCTCACAAACCATGGGAAGAATACTAATGGGGCCATGA
Protein sequence

>Msa0824530

MEATTTNSGEGTPIDPNRTGSGQNSMARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLLQALNCSMASAGSATFPVTSACFNTSTVNGRKSSFFEFKPQDRNMVPADFNNHVSEKSTQVEGSGNGPSFRSSPLNEKEIADQSNELSLSSSPVQMVSSSTSTPVDVNSDEPNHKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAGRDDKASNSPEQSVVATNDLSPEGAGFVSTRTNDGVDEDDPFSKQRKMELGNADIIPVVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGHATSFRQTRIKLEENDTISLDLGMGISSTAGNRSNGQGKMLLSEFRNSNQTHTSNSSFKFVHNTTSAPVYYGVLNNGSNPFGSRENRNDGSSLNHSVYPCSQTMGRILMGP*