Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824900 | XP_039690127.1 | 85.305 | 279 | 33 | 2 | 1 | 279 | 1 | 271 | 5.90e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824900 | G7K4J6 | 85.305 | 279 | 33 | 2 | 1 | 279 | 1 | 271 | 2.82e-170 | 481 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0824900 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824900 | MtrunA17_Chr5g0445971 | 86.310 | 168 | 20 | 2 | 1 | 168 | 1 | 165 | 8.37e-102 | 294 |
| Msa0824900 | MtrunA17_Chr5g0435401 | 62.810 | 242 | 85 | 3 | 34 | 271 | 44 | 284 | 4.32e-95 | 286 |
| Msa0824900 | MtrunA17_Chr5g0435401 | 63.462 | 104 | 33 | 2 | 177 | 279 | 264 | 363 | 1.38e-32 | 124 |
| Msa0824900 | MtrunA17_Chr1g0192841 | 60.345 | 116 | 37 | 2 | 166 | 272 | 44 | 159 | 3.68e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAACTGCTTTGTTTATA+TGG | 0.157345 | 5_3:-64611833 | Msa0824900:three_prime_UTR |
| ATTCCTTCTTGAGGAATATT+TGG | 0.163911 | 5_3:+64612386 | None:intergenic |
| AGTAAAACAGGTACAAGTTT+AGG | 0.215844 | 5_3:+64613829 | None:intergenic |
| CTTTCTAAGGTCCAGTTAAA+AGG | 0.247346 | 5_3:-64613123 | Msa0824900:intron |
| GGTGTAGCTGTCAAATATTC+TGG | 0.274965 | 5_3:-64614350 | Msa0824900:five_prime_UTR |
| ACATAAGAGTGACACGTATT+TGG | 0.322703 | 5_3:-64614371 | Msa0824900:five_prime_UTR |
| TTGAGTTGTCTTGTTGTTAG+AGG | 0.323549 | 5_3:+64614284 | None:intergenic |
| AATTTGACTAGAGTAGTTCT+TGG | 0.346592 | 5_3:+64613030 | None:intergenic |
| TATGAAAGTCCATACAAATA+AGG | 0.353156 | 5_3:-64614327 | Msa0824900:five_prime_UTR |
| GATGTCGAACATTGATAAAA+AGG | 0.361840 | 5_3:-64612293 | Msa0824900:intron |
| GTAAAACAGGTACAAGTTTA+GGG | 0.365515 | 5_3:+64613830 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5_3:-64613367 | Msa0824900:CDS |
| TTCTTGCTTTCCTCTACATA+TGG | 0.365771 | 5_3:+64612152 | None:intergenic |
| AACTACTCTAGTCAAATTAC+AGG | 0.369281 | 5_3:-64613025 | Msa0824900:intron |
| TGGTAACCACTTTGGTTCCT+TGG | 0.370453 | 5_3:+64612406 | None:intergenic |
| AGGTTGGCCATGAAAAGAAA+TGG | 0.384383 | 5_3:-64613395 | Msa0824900:CDS |
| CAACAATGCAGCAGTGGACT+TGG | 0.400057 | 5_3:-64611985 | Msa0824900:three_prime_UTR |
| TTGAGAAATTGTACTTCTAC+AGG | 0.406380 | 5_3:-64613281 | Msa0824900:CDS |
| AGAGGAAAGCAAGAAAATAA+AGG | 0.412073 | 5_3:-64612144 | Msa0824900:CDS |
| TAGAAGGTCTCCAAGTCATT+AGG | 0.425705 | 5_3:+64614175 | None:intergenic |
| TTGTGACCTCCAAGTAAAAC+AGG | 0.431064 | 5_3:+64613817 | None:intergenic |
| ACATTGGTGAGTTGTGTGTT+TGG | 0.432104 | 5_3:+64614229 | None:intergenic |
| AGAGCACTCAAGATCTTAAG+AGG | 0.439435 | 5_3:-64612082 | Msa0824900:CDS |
| GGAATATTTGGTAACCACTT+TGG | 0.442677 | 5_3:+64612398 | None:intergenic |
| CTCACCAATGTTGTCGTGTC+CGG | 0.446758 | 5_3:-64614217 | Msa0824900:CDS |
| TCGACTGACAGCTGATCATC+AGG | 0.462610 | 5_3:-64612359 | Msa0824900:CDS |
| GGTTGGCCATGAAAAGAAAT+GGG | 0.467471 | 5_3:-64613394 | Msa0824900:CDS |
| TTGGATATCTTTGCCGCCAT+CGG | 0.472444 | 5_3:+64613049 | None:intergenic |
| TCGAGTGAGTTTGATATAGA+AGG | 0.472599 | 5_3:+64614159 | None:intergenic |
| CCTGCAACCGCCAATGCAAA+AGG | 0.477405 | 5_3:-64613252 | Msa0824900:intron |
| ATAAACAAAGCAGTTTAGCT+TGG | 0.493707 | 5_3:+64611837 | None:intergenic |
| ACAAGTTTAGGGATGTTTCT+CGG | 0.498193 | 5_3:+64613841 | None:intergenic |
| GTACGGTAGATTTGCTAACC+TGG | 0.501073 | 5_3:-64611935 | Msa0824900:three_prime_UTR |
| AACAAATGGCTATTGATACT+TGG | 0.501313 | 5_3:-64612321 | Msa0824900:CDS |
| CATACGCGTCCGAAAACAAA+TGG | 0.508342 | 5_3:-64612335 | Msa0824900:CDS |
| CTCAATGGAAGACAAGGAAA+TGG | 0.517620 | 5_3:-64614266 | Msa0824900:exon |
| TTGTCTTGTTGTTAGAGGAA+TGG | 0.525758 | 5_3:+64614289 | None:intergenic |
| TGAATGACTGTACTAGTTGT+TGG | 0.526633 | 5_3:-64611907 | Msa0824900:three_prime_UTR |
| TACTTGGAGGTCACAAGAAG+AGG | 0.530713 | 5_3:-64613810 | Msa0824900:CDS |
| GTATTCTTCTCCTAATGACT+TGG | 0.531995 | 5_3:-64614185 | Msa0824900:CDS |
| GTACAGTCATTCATATTCCC+AGG | 0.539258 | 5_3:+64611917 | None:intergenic |
| GAATGACTGTACTAGTTGTT+GGG | 0.543555 | 5_3:-64611906 | Msa0824900:three_prime_UTR |
| GTCGAGCACATTCCTTCTTG+AGG | 0.547295 | 5_3:+64612377 | None:intergenic |
| AATGTTGAATGTTTATCGTA+CGG | 0.547849 | 5_3:-64611952 | Msa0824900:three_prime_UTR |
| AAGGTCCAGTTAAAAGGAAG+CGG | 0.550807 | 5_3:-64613117 | Msa0824900:CDS |
| CTAACAACAAGACAACTCAA+TGG | 0.551952 | 5_3:-64614281 | Msa0824900:exon |
| CCAATGTTGTCGTGTCCGGC+GGG | 0.557640 | 5_3:-64614213 | Msa0824900:CDS |
| ACCAATGTTGTCGTGTCCGG+CGG | 0.561143 | 5_3:-64614214 | Msa0824900:CDS |
| GATTGAGATAAACTAGGGCA+TGG | 0.567259 | 5_3:+64613091 | None:intergenic |
| CCGTCGATTGAGATAAACTA+GGG | 0.572781 | 5_3:+64613086 | None:intergenic |
| AGGTCCAGTTAAAAGGAAGC+GGG | 0.574528 | 5_3:-64613116 | Msa0824900:CDS |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5_3:-64613363 | Msa0824900:CDS |
| TTACCAAATATTCCTCAAGA+AGG | 0.579179 | 5_3:-64612389 | Msa0824900:CDS |
| CCCGCCGGACACGACAACAT+TGG | 0.584078 | 5_3:+64614213 | None:intergenic |
| GGACGATGAAGATTATCCGA+TGG | 0.584176 | 5_3:-64613065 | Msa0824900:CDS |
| CCCTAGTTTATCTCAATCGA+CGG | 0.593570 | 5_3:-64613086 | Msa0824900:CDS |
| TTTGCATTGGCGGTTGCAGG+AGG | 0.593878 | 5_3:+64613255 | None:intergenic |
| TCCGTCGATTGAGATAAACT+AGG | 0.600008 | 5_3:+64613085 | None:intergenic |
| AGACAACTCAATGGAAGACA+AGG | 0.602364 | 5_3:-64614272 | Msa0824900:exon |
| TTGGAGGTCACAAGAAGAGG+AGG | 0.603112 | 5_3:-64613807 | Msa0824900:CDS |
| TACGGTAGATTTGCTAACCT+GGG | 0.603269 | 5_3:-64611934 | Msa0824900:three_prime_UTR |
| AGAAACAGAGAGGTGCTCCA+AGG | 0.610360 | 5_3:-64612423 | Msa0824900:CDS |
| TTTCATGTAGCCATATGTAG+AGG | 0.614803 | 5_3:-64612162 | Msa0824900:intron |
| ATTGAGATAAACTAGGGCAT+GGG | 0.620189 | 5_3:+64613092 | None:intergenic |
| GAGCACTCAAGATCTTAAGA+GGG | 0.640312 | 5_3:-64612081 | Msa0824900:CDS |
| GAAAAGAAGCATATTGTGTG+TGG | 0.670867 | 5_3:-64612056 | Msa0824900:CDS |
| CAAGGAAATGGTGAAGACGA+CGG | 0.673865 | 5_3:-64614254 | Msa0824900:CDS |
| CGATGAAGATTATCCGATGG+CGG | 0.681671 | 5_3:-64613062 | Msa0824900:CDS |
| AGAAGAATACTGTTTCCCGC+CGG | 0.682409 | 5_3:+64614198 | None:intergenic |
| AAAGAAAAGAAGAAACAGAG+AGG | 0.700139 | 5_3:-64612433 | Msa0824900:CDS |
| GGTGCTCCAAGGAACCAAAG+TGG | 0.716106 | 5_3:-64612412 | Msa0824900:CDS |
| GTTGGCCATGAAAAGAAATG+GGG | 0.719191 | 5_3:-64613393 | Msa0824900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATTACATATAATTATT+TGG | - | chr5_3:64612233-64612252 | Msa0824900:intron | 10.0% |
| !! | GTTATTACATATAATTATTT+GGG | - | chr5_3:64612234-64612253 | Msa0824900:intron | 10.0% |
| !! | ATTAAAAGTTGAAAGATTTA+TGG | - | chr5_3:64613920-64613939 | Msa0824900:intron | 15.0% |
| !!! | TCTGAGGAATTTTTTTTATA+AGG | + | chr5_3:64612695-64612714 | None:intergenic | 20.0% |
| !!! | TTCAATTTACAACGTTTTTA+TGG | - | chr5_3:64612719-64612738 | Msa0824900:intron | 20.0% |
| !! | ATTATTTGGATGAGTTTAAA+GGG | - | chr5_3:64613435-64613454 | Msa0824900:intron | 20.0% |
| !! | ATTTCAAATAAACCAACTAT+AGG | + | chr5_3:64613958-64613977 | None:intergenic | 20.0% |
| ! | TATGAAAGTCCATACAAATA+AGG | - | chr5_3:64611831-64611850 | Msa0824900:three_prime_UTR | 25.0% |
| ! | TTGAAACTGCAAAATAGAAT+TGG | + | chr5_3:64612294-64612313 | None:intergenic | 25.0% |
| ! | ACATCATATATATGATGACA+TGG | - | chr5_3:64612399-64612418 | Msa0824900:CDS | 25.0% |
| ! | TCTTGACTAATTTAGATTAC+AGG | + | chr5_3:64612644-64612663 | None:intergenic | 25.0% |
| ! | TGTAATCTAAATTAGTCAAG+AGG | - | chr5_3:64612643-64612662 | Msa0824900:intron | 25.0% |
| ! | GTAATCTAAATTAGTCAAGA+GGG | - | chr5_3:64612644-64612663 | Msa0824900:intron | 25.0% |
| ! | TAATCTAAATTAGTCAAGAG+GGG | - | chr5_3:64612645-64612664 | Msa0824900:intron | 25.0% |
| ! | TGCTTAAGATAACCATAAAT+TGG | + | chr5_3:64612945-64612964 | None:intergenic | 25.0% |
| ! | TAGTCAAATTACAGGTAATA+AGG | - | chr5_3:64613141-64613160 | Msa0824900:intron | 25.0% |
| !! | GGATCTAGAATATTAATGAT+TGG | - | chr5_3:64613162-64613181 | Msa0824900:intron | 25.0% |
| ! | GGAAAATTGAATTCATTGAT+TGG | - | chr5_3:64613183-64613202 | Msa0824900:intron | 25.0% |
| !! | TTGGTAACTCAATGATTATT+TGG | - | chr5_3:64613421-64613440 | Msa0824900:intron | 25.0% |
| ! | GATTATTTGGATGAGTTTAA+AGG | - | chr5_3:64613434-64613453 | Msa0824900:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTACTTGA+GGG | + | chr5_3:64613716-64613735 | None:intergenic | 25.0% |
| !!! | TATCAATAGCCATTTGTTTT+CGG | + | chr5_3:64613835-64613854 | None:intergenic | 25.0% |
| ! | AATGTTGAATGTTTATCGTA+CGG | - | chr5_3:64614206-64614225 | Msa0824900:CDS | 25.0% |
| !!! | AAGTCTTTTTTTGGTTTTTG+AGG | - | chr5_3:64614276-64614295 | Msa0824900:exon | 25.0% |
| !! | AATGTTTTCACATTTCACTA+GGG | - | chr5_3:64614363-64614382 | Msa0824900:five_prime_UTR | 25.0% |
| !! | GAGCATTTTCCTTATTTGTA+TGG | + | chr5_3:64611843-64611862 | None:intergenic | 30.0% |
| ATTTCGTGCATTCATATTCA+AGG | - | chr5_3:64612114-64612133 | Msa0824900:CDS | 30.0% | |
| GTAAAACAGGTACAAGTTTA+GGG | + | chr5_3:64612331-64612350 | None:intergenic | 30.0% | |
| AGTAAAACAGGTACAAGTTT+AGG | + | chr5_3:64612332-64612351 | None:intergenic | 30.0% | |
| ! | AAACTTGTACCTGTTTTACT+TGG | - | chr5_3:64612332-64612351 | Msa0824900:CDS | 30.0% |
| ! | TTTTCACCAGGTATATTGTT+TGG | - | chr5_3:64612374-64612393 | Msa0824900:CDS | 30.0% |
| ATGTAACCAAACAATATACC+TGG | + | chr5_3:64612383-64612402 | None:intergenic | 30.0% | |
| !!! | TAGAAGCTACATTTTGGTTA+TGG | + | chr5_3:64612588-64612607 | None:intergenic | 30.0% |
| ! | TGCAAATAGAAGCTACATTT+TGG | + | chr5_3:64612594-64612613 | None:intergenic | 30.0% |
| TTACAGGCACAACATATTTA+TGG | + | chr5_3:64612628-64612647 | None:intergenic | 30.0% | |
| TTGTAAATTGAACATCTCTG+AGG | + | chr5_3:64612711-64612730 | None:intergenic | 30.0% | |
| !! | TTTTTCAACTTGAGCACATA+AGG | + | chr5_3:64612832-64612851 | None:intergenic | 30.0% |
| TTGAGAAATTGTACTTCTAC+AGG | - | chr5_3:64612877-64612896 | Msa0824900:intron | 30.0% | |
| ! | AAAAGGTTAACCTTTTGCAT+TGG | + | chr5_3:64612919-64612938 | None:intergenic | 30.0% |
| ! | ATGCAAAAGGTTAACCTTTT+AGG | - | chr5_3:64612919-64612938 | Msa0824900:intron | 30.0% |
| ! | TAACCTTTTAGGCCAATTTA+TGG | - | chr5_3:64612930-64612949 | Msa0824900:intron | 30.0% |
| ! | TAACCATAAATTGGCCTAAA+AGG | + | chr5_3:64612936-64612955 | None:intergenic | 30.0% |
| !!! | TGTTTCAGTTTGTTGCATTT+TGG | - | chr5_3:64612974-64612993 | Msa0824900:intron | 30.0% |
| ACCTTAAATACTCCTTTCTA+AGG | - | chr5_3:64613022-64613041 | Msa0824900:intron | 30.0% | |
| !! | ACCTTAGAAAGGAGTATTTA+AGG | + | chr5_3:64613026-64613045 | None:intergenic | 30.0% |
| AATTTGACTAGAGTAGTTCT+TGG | + | chr5_3:64613131-64613150 | None:intergenic | 30.0% | |
| AACTACTCTAGTCAAATTAC+AGG | - | chr5_3:64613133-64613152 | Msa0824900:intron | 30.0% | |
| ATTCACTAAAGTTCCAAAAC+CGG | - | chr5_3:64613349-64613368 | Msa0824900:CDS | 30.0% | |
| ATTGGATTCTTACTTAAAGC+AGG | - | chr5_3:64613653-64613672 | Msa0824900:intron | 30.0% | |
| !! | CTTCTTTTCTTTGTTACTTG+AGG | + | chr5_3:64613717-64613736 | None:intergenic | 30.0% |
| AAAGAAAAGAAGAAACAGAG+AGG | - | chr5_3:64613725-64613744 | Msa0824900:intron | 30.0% | |
| TTACCAAATATTCCTCAAGA+AGG | - | chr5_3:64613769-64613788 | Msa0824900:intron | 30.0% | |
| ATTCCTTCTTGAGGAATATT+TGG | + | chr5_3:64613775-64613794 | None:intergenic | 30.0% | |
| AACAAATGGCTATTGATACT+TGG | - | chr5_3:64613837-64613856 | Msa0824900:CDS | 30.0% | |
| GATGTCGAACATTGATAAAA+AGG | - | chr5_3:64613865-64613884 | Msa0824900:intron | 30.0% | |
| !! | TTTTGCAATTAGCCTATAGT+TGG | - | chr5_3:64613943-64613962 | Msa0824900:intron | 30.0% |
| AGAGGAAAGCAAGAAAATAA+AGG | - | chr5_3:64614014-64614033 | Msa0824900:intron | 30.0% | |
| GGAAAAAAACAAAGAAGCAA+TGG | - | chr5_3:64614035-64614054 | Msa0824900:intron | 30.0% | |
| ATAAACAAAGCAGTTTAGCT+TGG | + | chr5_3:64614324-64614343 | None:intergenic | 30.0% | |
| !! | GCTAAACTGCTTTGTTTATA+TGG | - | chr5_3:64614325-64614344 | Msa0824900:five_prime_UTR | 30.0% |
| ! | CAATGTTTTCACATTTCACT+AGG | - | chr5_3:64614362-64614381 | Msa0824900:five_prime_UTR | 30.0% |
| ACATAAGAGTGACACGTATT+TGG | - | chr5_3:64611787-64611806 | Msa0824900:three_prime_UTR | 35.0% | |
| !! | TTGTCTTGTTGTTAGAGGAA+TGG | + | chr5_3:64611872-64611891 | None:intergenic | 35.0% |
| !! | TTGAGTTGTCTTGTTGTTAG+AGG | + | chr5_3:64611877-64611896 | None:intergenic | 35.0% |
| CTAACAACAAGACAACTCAA+TGG | - | chr5_3:64611877-64611896 | Msa0824900:three_prime_UTR | 35.0% | |
| GTATTCTTCTCCTAATGACT+TGG | - | chr5_3:64611973-64611992 | Msa0824900:three_prime_UTR | 35.0% | |
| TCGAGTGAGTTTGATATAGA+AGG | + | chr5_3:64612002-64612021 | None:intergenic | 35.0% | |
| ! | TTTTAGACTTCGCTCGAAAA+CGG | - | chr5_3:64612023-64612042 | Msa0824900:three_prime_UTR | 35.0% |
| ! | TGTGTGTTTACTGCTTTGTT+TGG | - | chr5_3:64612081-64612100 | Msa0824900:CDS | 35.0% |
| GCAAAATAGAATTGGAACAG+AGG | + | chr5_3:64612286-64612305 | None:intergenic | 35.0% | |
| ACAAGTTTAGGGATGTTTCT+CGG | + | chr5_3:64612320-64612339 | None:intergenic | 35.0% | |
| GCAATGTCGAAAACTATATG+TGG | + | chr5_3:64612559-64612578 | None:intergenic | 35.0% | |
| TTCTCTTGAATGTTTCCTAC+AGG | - | chr5_3:64612743-64612762 | Msa0824900:intron | 35.0% | |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | - | chr5_3:64612791-64612810 | Msa0824900:intron | 35.0% |
| !! | GCTCAAGTTGAAAAACTCTA+TGG | - | chr5_3:64612837-64612856 | Msa0824900:intron | 35.0% |
| !! | CTTTTAACTGGACCTTAGAA+AGG | + | chr5_3:64613037-64613056 | None:intergenic | 35.0% |
| !! | CTTTCTAAGGTCCAGTTAAA+AGG | - | chr5_3:64613035-64613054 | Msa0824900:CDS | 35.0% |
| ATTGAGATAAACTAGGGCAT+GGG | + | chr5_3:64613069-64613088 | None:intergenic | 35.0% | |
| !! | AAAAGTAGCAAAACCGGTTT+TGG | + | chr5_3:64613365-64613384 | None:intergenic | 35.0% |
| AACTCGAAAAGTAGCAAAAC+CGG | + | chr5_3:64613371-64613390 | None:intergenic | 35.0% | |
| ! | CTGTGGACATGAGTTTATTT+TGG | - | chr5_3:64613402-64613421 | Msa0824900:intron | 35.0% |
| TGGATGAGTTTAAAGGGATT+TGG | - | chr5_3:64613441-64613460 | Msa0824900:intron | 35.0% | |
| ACAACCCAAATTCAGTTTAG+AGG | - | chr5_3:64613592-64613611 | Msa0824900:intron | 35.0% | |
| TTCTTACTTAAAGCAGGAGA+TGG | - | chr5_3:64613659-64613678 | Msa0824900:intron | 35.0% | |
| ! | GGAATATTTGGTAACCACTT+TGG | + | chr5_3:64613763-64613782 | None:intergenic | 35.0% |
| TTTCATGTAGCCATATGTAG+AGG | - | chr5_3:64613996-64614015 | Msa0824900:intron | 35.0% | |
| TTCTTGCTTTCCTCTACATA+TGG | + | chr5_3:64614009-64614028 | None:intergenic | 35.0% | |
| ! | GAAAAGAAGCATATTGTGTG+TGG | - | chr5_3:64614102-64614121 | Msa0824900:intron | 35.0% |
| TGAATGACTGTACTAGTTGT+TGG | - | chr5_3:64614251-64614270 | Msa0824900:CDS | 35.0% | |
| GAATGACTGTACTAGTTGTT+GGG | - | chr5_3:64614252-64614271 | Msa0824900:CDS | 35.0% | |
| !!! | TTGTTGGGCAAGTCTTTTTT+TGG | - | chr5_3:64614267-64614286 | Msa0824900:exon | 35.0% |
| GGTGTAGCTGTCAAATATTC+TGG | - | chr5_3:64611808-64611827 | Msa0824900:three_prime_UTR | 40.0% | |
| AGACAACTCAATGGAAGACA+AGG | - | chr5_3:64611886-64611905 | Msa0824900:three_prime_UTR | 40.0% | |
| CTCAATGGAAGACAAGGAAA+TGG | - | chr5_3:64611892-64611911 | Msa0824900:three_prime_UTR | 40.0% | |
| ACATTGGTGAGTTGTGTGTT+TGG | + | chr5_3:64611932-64611951 | None:intergenic | 40.0% | |
| TAGAAGGTCTCCAAGTCATT+AGG | + | chr5_3:64611986-64612005 | None:intergenic | 40.0% | |
| GCAGTAAACACACATGCAAA+CGG | + | chr5_3:64612075-64612094 | None:intergenic | 40.0% | |
| ! | CTTGTACCTGTTTTACTTGG+AGG | - | chr5_3:64612335-64612354 | Msa0824900:CDS | 40.0% |
| TTGTGACCTCCAAGTAAAAC+AGG | + | chr5_3:64612344-64612363 | None:intergenic | 40.0% | |
| GTGGACATACATTCGAACTT+TGG | + | chr5_3:64612540-64612559 | None:intergenic | 40.0% | |
| CTTGAATGTTTCCTACAGGT+TGG | - | chr5_3:64612747-64612766 | Msa0824900:intron | 40.0% | |
| ! | AGGTTGGCCATGAAAAGAAA+TGG | - | chr5_3:64612763-64612782 | Msa0824900:intron | 40.0% |
| ! | GGTTGGCCATGAAAAGAAAT+GGG | - | chr5_3:64612764-64612783 | Msa0824900:intron | 40.0% |
| GTTGGCCATGAAAAGAAATG+GGG | - | chr5_3:64612765-64612784 | Msa0824900:intron | 40.0% | |
| ! | CTTCACCCCATTTCTTTTCA+TGG | + | chr5_3:64612773-64612792 | None:intergenic | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | - | chr5_3:64612795-64612814 | Msa0824900:intron | 40.0% |
| ! | AGGTTAACCTTTTGCATTGG+CGG | + | chr5_3:64612916-64612935 | None:intergenic | 40.0% |
| AAGGTCCAGTTAAAAGGAAG+CGG | - | chr5_3:64613041-64613060 | Msa0824900:CDS | 40.0% | |
| GATTGAGATAAACTAGGGCA+TGG | + | chr5_3:64613070-64613089 | None:intergenic | 40.0% | |
| ! | CCGTCGATTGAGATAAACTA+GGG | + | chr5_3:64613075-64613094 | None:intergenic | 40.0% |
| CCCTAGTTTATCTCAATCGA+CGG | - | chr5_3:64613072-64613091 | Msa0824900:CDS | 40.0% | |
| ! | TCCGTCGATTGAGATAAACT+AGG | + | chr5_3:64613076-64613095 | None:intergenic | 40.0% |
| CACAACTGCTCAATTCACTA+TGG | - | chr5_3:64613319-64613338 | Msa0824900:CDS | 40.0% | |
| GCTGCCTCTAAACTGAATTT+GGG | + | chr5_3:64613599-64613618 | None:intergenic | 40.0% | |
| AGCTGCCTCTAAACTGAATT+TGG | + | chr5_3:64613600-64613619 | None:intergenic | 40.0% | |
| GTGCTTATGCTGCAATACAT+TGG | - | chr5_3:64613635-64613654 | Msa0824900:intron | 40.0% | |
| ! | AGAGCACTCAAGATCTTAAG+AGG | - | chr5_3:64614076-64614095 | Msa0824900:intron | 40.0% |
| GAGCACTCAAGATCTTAAGA+GGG | - | chr5_3:64614077-64614096 | Msa0824900:intron | 40.0% | |
| ! | TTTTGTCAACAATGCAGCAG+TGG | - | chr5_3:64614167-64614186 | Msa0824900:CDS | 40.0% |
| !! | TACGGTAGATTTGCTAACCT+GGG | - | chr5_3:64614224-64614243 | Msa0824900:CDS | 40.0% |
| GTACAGTCATTCATATTCCC+AGG | + | chr5_3:64614244-64614263 | None:intergenic | 40.0% | |
| CAAGGAAATGGTGAAGACGA+CGG | - | chr5_3:64611904-64611923 | Msa0824900:three_prime_UTR | 45.0% | |
| AGAAGAATACTGTTTCCCGC+CGG | + | chr5_3:64611963-64611982 | None:intergenic | 45.0% | |
| TACTTGGAGGTCACAAGAAG+AGG | - | chr5_3:64612348-64612367 | Msa0824900:CDS | 45.0% | |
| ! | AAGAAGAGGAGGTTTTCACC+AGG | - | chr5_3:64612362-64612381 | Msa0824900:CDS | 45.0% |
| AGCCTTCAACTTCAACCTAC+AGG | - | chr5_3:64612480-64612499 | Msa0824900:CDS | 45.0% | |
| GCCTTCAACTTCAACCTACA+GGG | - | chr5_3:64612481-64612500 | Msa0824900:CDS | 45.0% | |
| CCTTCAACTTCAACCTACAG+GGG | - | chr5_3:64612482-64612501 | Msa0824900:CDS | 45.0% | |
| TTGCTAGATTCAACCCCTGT+AGG | + | chr5_3:64612498-64612517 | None:intergenic | 45.0% | |
| ! | TCTTTTCATGGCCAACCTGT+AGG | + | chr5_3:64612761-64612780 | None:intergenic | 45.0% |
| AGGTCCAGTTAAAAGGAAGC+GGG | - | chr5_3:64613042-64613061 | Msa0824900:CDS | 45.0% | |
| GGACGATGAAGATTATCCGA+TGG | - | chr5_3:64613093-64613112 | Msa0824900:CDS | 45.0% | |
| CGATGAAGATTATCCGATGG+CGG | - | chr5_3:64613096-64613115 | Msa0824900:CDS | 45.0% | |
| TTGGATATCTTTGCCGCCAT+CGG | + | chr5_3:64613112-64613131 | None:intergenic | 45.0% | |
| CGAGTTTATTAGCTGCACTG+TGG | - | chr5_3:64613385-64613404 | Msa0824900:CDS | 45.0% | |
| GGTGGTTCAAACAAGATCTG+CGG | - | chr5_3:64613513-64613532 | Msa0824900:intron | 45.0% | |
| AAGCACATCGTCGTTCAATC+TGG | + | chr5_3:64613540-64613559 | None:intergenic | 45.0% | |
| ! | TGGTAACCACTTTGGTTCCT+TGG | + | chr5_3:64613755-64613774 | None:intergenic | 45.0% |
| CATACGCGTCCGAAAACAAA+TGG | - | chr5_3:64613823-64613842 | Msa0824900:CDS | 45.0% | |
| !! | GTACGGTAGATTTGCTAACC+TGG | - | chr5_3:64614223-64614242 | Msa0824900:CDS | 45.0% |
| CTCACCAATGTTGTCGTGTC+CGG | - | chr5_3:64611941-64611960 | Msa0824900:three_prime_UTR | 50.0% | |
| TTGGAGGTCACAAGAAGAGG+AGG | - | chr5_3:64612351-64612370 | Msa0824900:CDS | 50.0% | |
| ! | CCCCTGTAGGTTGAAGTTGA+AGG | + | chr5_3:64612485-64612504 | None:intergenic | 50.0% |
| TGTTTGAACCACCACCGATG+TGG | + | chr5_3:64613506-64613525 | None:intergenic | 50.0% | |
| !! | AGAAACAGAGAGGTGCTCCA+AGG | - | chr5_3:64613735-64613754 | Msa0824900:intron | 50.0% |
| GTCGAGCACATTCCTTCTTG+AGG | + | chr5_3:64613784-64613803 | None:intergenic | 50.0% | |
| TCGACTGACAGCTGATCATC+AGG | - | chr5_3:64613799-64613818 | Msa0824900:CDS | 50.0% | |
| ! | CAACAATGCAGCAGTGGACT+TGG | - | chr5_3:64614173-64614192 | Msa0824900:CDS | 50.0% |
| ACCAATGTTGTCGTGTCCGG+CGG | - | chr5_3:64611944-64611963 | Msa0824900:three_prime_UTR | 55.0% | |
| ! | TTTGCATTGGCGGTTGCAGG+AGG | + | chr5_3:64612906-64612925 | None:intergenic | 55.0% |
| !! | CCTTTTGCATTGGCGGTTGC+AGG | + | chr5_3:64612909-64612928 | None:intergenic | 55.0% |
| CCTGCAACCGCCAATGCAAA+AGG | - | chr5_3:64612906-64612925 | Msa0824900:intron | 55.0% | |
| ! | GGGTCCCGCTTCCTTTTAAC+TGG | + | chr5_3:64613049-64613068 | None:intergenic | 55.0% |
| ! | CCGATGTGGTTGAAAGCGTG+CGG | + | chr5_3:64613492-64613511 | None:intergenic | 55.0% |
| CCGCACGCTTTCAACCACAT+CGG | - | chr5_3:64613489-64613508 | Msa0824900:intron | 55.0% | |
| CACGCTTTCAACCACATCGG+TGG | - | chr5_3:64613492-64613511 | Msa0824900:intron | 55.0% | |
| GCTTTCAACCACATCGGTGG+TGG | - | chr5_3:64613495-64613514 | Msa0824900:intron | 55.0% | |
| GGTGCTCCAAGGAACCAAAG+TGG | - | chr5_3:64613746-64613765 | Msa0824900:intron | 55.0% | |
| CCAATGTTGTCGTGTCCGGC+GGG | - | chr5_3:64611945-64611964 | Msa0824900:three_prime_UTR | 60.0% | |
| AGCGTGCGGTCACAGGATTG+TGG | + | chr5_3:64613478-64613497 | None:intergenic | 60.0% | |
| ! | GGTTGAAAGCGTGCGGTCAC+AGG | + | chr5_3:64613485-64613504 | None:intergenic | 60.0% |
| CCCGCCGGACACGACAACAT+TGG | + | chr5_3:64611948-64611967 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64611768 | 64614412 | 64611768 | ID=Msa0824900;Name=Msa0824900 |
| chr5_3 | mRNA | 64611768 | 64614412 | 64611768 | ID=Msa0824900-mRNA-1;Parent=Msa0824900;Name=Msa0824900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=128|0.8|0.83|1|1|1|6|278|279 |
| chr5_3 | exon | 64611768 | 64612174 | 64611768 | ID=Msa0824900-mRNA-1:exon:20150;Parent=Msa0824900-mRNA-1 |
| chr5_3 | exon | 64612294 | 64612505 | 64612294 | ID=Msa0824900-mRNA-1:exon:20149;Parent=Msa0824900-mRNA-1 |
| chr5_3 | exon | 64613026 | 64613136 | 64613026 | ID=Msa0824900-mRNA-1:exon:20148;Parent=Msa0824900-mRNA-1 |
| chr5_3 | exon | 64613253 | 64613415 | 64613253 | ID=Msa0824900-mRNA-1:exon:20147;Parent=Msa0824900-mRNA-1 |
| chr5_3 | exon | 64613797 | 64613872 | 64613797 | ID=Msa0824900-mRNA-1:exon:20146;Parent=Msa0824900-mRNA-1 |
| chr5_3 | exon | 64614136 | 64614412 | 64614136 | ID=Msa0824900-mRNA-1:exon:20145;Parent=Msa0824900-mRNA-1 |
| chr5_3 | five_prime_UTR | 64614285 | 64614412 | 64614285 | ID=Msa0824900-mRNA-1:five_prime_utr;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64614136 | 64614284 | 64614136 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64613797 | 64613872 | 64613797 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64613253 | 64613415 | 64613253 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64613026 | 64613136 | 64613026 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64612294 | 64612505 | 64612294 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | CDS | 64612046 | 64612174 | 64612046 | ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1 |
| chr5_3 | three_prime_UTR | 64611768 | 64612045 | 64611768 | ID=Msa0824900-mRNA-1:three_prime_utr;Parent=Msa0824900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
