AlfalfaGEDB | Msa0824900

M. sativa cultivar zhongmu-4 / Msa0824900

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0824900	XP_039690127.1	85.305	279	33	2	1	279	1	271	5.90e-170	481

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0824900	G7K4J6	85.305	279	33	2	1	279	1	271	2.82e-170	481

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0824900	TR	ARID

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0824900	MtrunA17_Chr5g0445971	86.310	168	20	2	1	168	1	165	8.37e-102	294
Msa0824900	MtrunA17_Chr5g0435401	62.810	242	85	3	34	271	44	284	4.32e-95	286
Msa0824900	MtrunA17_Chr5g0435401	63.462	104	33	2	177	279	264	363	1.38e-32	124
Msa0824900	MtrunA17_Chr1g0192841	60.345	116	37	2	166	272	44	159	3.68e-33	121

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 72 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAAGAAGAAACAGAG+AGG	0.700139	5_3:-64612433	Msa0824900:CDS
AACAAATGGCTATTGATACT+TGG	0.501313	5_3:-64612321	Msa0824900:CDS
AACTACTCTAGTCAAATTAC+AGG	0.369281	5_3:-64613025	Msa0824900:intron
AAGGTCCAGTTAAAAGGAAG+CGG	0.550807	5_3:-64613117	Msa0824900:CDS
AATGTTGAATGTTTATCGTA+CGG	0.547849	5_3:-64611952	Msa0824900:three_prime_UTR
AATTTGACTAGAGTAGTTCT+TGG	0.346592	5_3:+64613030	None:intergenic
ACAAGTTTAGGGATGTTTCT+CGG	0.498193	5_3:+64613841	None:intergenic
ACATAAGAGTGACACGTATT+TGG	0.322703	5_3:-64614371	Msa0824900:five_prime_UTR
ACATTGGTGAGTTGTGTGTT+TGG	0.432104	5_3:+64614229	None:intergenic
ACCAATGTTGTCGTGTCCGG+CGG	0.561143	5_3:-64614214	Msa0824900:CDS

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCGTGCATTCATATTCA+AGG	-	chr5_3:64612114-64612133	Msa0824900:CDS	30.0%
GTAAAACAGGTACAAGTTTA+GGG	+	chr5_3:64612331-64612350	None:intergenic	30.0%
AGTAAAACAGGTACAAGTTT+AGG	+	chr5_3:64612332-64612351	None:intergenic	30.0%
ATGTAACCAAACAATATACC+TGG	+	chr5_3:64612383-64612402	None:intergenic	30.0%
TTACAGGCACAACATATTTA+TGG	+	chr5_3:64612628-64612647	None:intergenic	30.0%
TTGTAAATTGAACATCTCTG+AGG	+	chr5_3:64612711-64612730	None:intergenic	30.0%
TTGAGAAATTGTACTTCTAC+AGG	-	chr5_3:64612877-64612896	Msa0824900:intron	30.0%
ACCTTAAATACTCCTTTCTA+AGG	-	chr5_3:64613022-64613041	Msa0824900:intron	30.0%
AATTTGACTAGAGTAGTTCT+TGG	+	chr5_3:64613131-64613150	None:intergenic	30.0%
AACTACTCTAGTCAAATTAC+AGG	-	chr5_3:64613133-64613152	Msa0824900:intron	30.0%

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	64611768	64614412	64611768	ID=Msa0824900;Name=Msa0824900
chr5_3	mRNA	64611768	64614412	64611768	ID=Msa0824900-mRNA-1;Parent=Msa0824900;Name=Msa0824900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=128\|0.8\|0.83\|1\|1\|1\|6\|278\|279
chr5_3	exon	64611768	64612174	64611768	ID=Msa0824900-mRNA-1:exon:20150;Parent=Msa0824900-mRNA-1
chr5_3	exon	64612294	64612505	64612294	ID=Msa0824900-mRNA-1:exon:20149;Parent=Msa0824900-mRNA-1
chr5_3	exon	64613026	64613136	64613026	ID=Msa0824900-mRNA-1:exon:20148;Parent=Msa0824900-mRNA-1
chr5_3	exon	64613253	64613415	64613253	ID=Msa0824900-mRNA-1:exon:20147;Parent=Msa0824900-mRNA-1
chr5_3	exon	64613797	64613872	64613797	ID=Msa0824900-mRNA-1:exon:20146;Parent=Msa0824900-mRNA-1
chr5_3	exon	64614136	64614412	64614136	ID=Msa0824900-mRNA-1:exon:20145;Parent=Msa0824900-mRNA-1
chr5_3	five_prime_UTR	64614285	64614412	64614285	ID=Msa0824900-mRNA-1:five_prime_utr;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64614136	64614284	64614136	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64613797	64613872	64613797	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64613253	64613415	64613253	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64613026	64613136	64613026	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64612294	64612505	64612294	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	CDS	64612046	64612174	64612046	ID=Msa0824900-mRNA-1:cds;Parent=Msa0824900-mRNA-1
chr5_3	three_prime_UTR	64611768	64612045	64611768	ID=Msa0824900-mRNA-1:three_prime_utr;Parent=Msa0824900-mRNA-1

Gene Sequence

>Msa0824900

ATGGAAGACAAGGAAATGGTGAAGACGACGGTTCCAAACACACAACTCACCAATGTTGTCGTGTCCGGCGGGAAACAGTATTCTTCTCCTAATGACTTGGAGACCTTCTATATCAAACTCACTCGACTTTTAGACTTCGCTCGAAAACGTTTCAATGTCCGAGAAACATCCCTAAACTTGTACCTGTTTTACTTGGAGGTCACAAGAAGAGGAGGTTTTCACCAGGTTGGCCATGAAAAGAAATGGGGTGAAGTTGTTTCTGCTCTAAAACTGGAAGGAAACAATGCAACCTTATGTGCTCAAGTTGAAAAACTCTATGGTCATCTTCTTTACGAATTTGAGAAATTGTACTTCTACAGGTCTCCTCCTGCAACCGCCAATGCAAAAGGTCCAGTTAAAAGGAAGCGGGACCCATGCCCTAGTTTATCTCAATCGACGGACGATGAAGATTATCCGATGGCGGCAAAGATATCCAAGAACTACTCTAGTCAAATTACAGGAGATGGATATCATGAATCTCAAGTGTTTCAACAAGCACCCTCAAGTAACAAAGAAAAGAAGAAACAGAGAGGTGCTCCAAGGAACCAAAGTGGTTACCAAATATTCCTCAAGAAGGAATGTGCTCGACTGACAGCTGATCATCAGGACATACGCGTCCGAAAACAAATGGCTATTGATACTTGGAAGAAGATGTCGAACATTGATAAAAAGCCATATGTAGAGGAAAGCAAGAAAATAAAGGAAAAAAACAAAGAAGCAATGGTCATTGACAATGAACAGAAGAGCACTCAAGATCTTAAGAGGGATGAAAAGAAGCATATTGTGTGTGGTGACTACTAA

Protein sequence

>Msa0824900

MEDKEMVKTTVPNTQLTNVVVSGGKQYSSPNDLETFYIKLTRLLDFARKRFNVRETSLNLYLFYLEVTRRGGFHQVGHEKKWGEVVSALKLEGNNATLCAQVEKLYGHLLYEFEKLYFYRSPPATANAKGPVKRKRDPCPSLSQSTDDEDYPMAAKISKNYSSQITGDGYHESQVFQQAPSSNKEKKKQRGAPRNQSGYQIFLKKECARLTADHQDIRVRKQMAIDTWKKMSNIDKKPYVEESKKIKEKNKEAMVIDNEQKSTQDLKRDEKKHIVCGDY*