AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0825500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825500 MtrunA17_Chr5g0447381 97.933 387 8 0 92 478 6 392 0.0 776
Msa0825500 MtrunA17_Chr5g0447371 91.139 79 6 1 18 95 19 97 2.68e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825500 AT5G35770.1 46.136 440 214 8 43 475 20 443 4.14e-114 343

Find 138 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCTTCTATACATTTAT+TGG 0.108359 5_3:-65357300 Msa0825500:CDS
TTATTAGGGTGCATGAATTT+AGG 0.164199 5_3:-65357488 Msa0825500:CDS
GTCTACATTGCTATTATTAA+TGG 0.164360 5_3:-65358010 Msa0825500:CDS
TCATGGTTAAGAGGTTTATT+AGG 0.167477 5_3:-65357503 Msa0825500:CDS
TGCCATCCTTGAACCGTTTC+AGG 0.195196 5_3:+65357791 None:intergenic
CCTTCTCCATCATCTCTTAC+AGG 0.225560 5_3:+65357380 None:intergenic
GCGTGAGTAGGTTTAGATTA+AGG 0.227131 5_3:-65357529 Msa0825500:CDS
GGGTATGTTATAACATATTC+TGG 0.276633 5_3:-65357467 Msa0825500:CDS
TCCGTTTCGGGAATTGTAAT+TGG 0.284357 5_3:-65358070 Msa0825500:CDS
TATTAGGGTGCATGAATTTA+GGG 0.289123 5_3:-65357487 Msa0825500:CDS
AATGTTGCTGCTGACATTCC+TGG 0.294438 5_3:-65362230 Msa0825500:CDS
TATATGCTGGCCACGCGGGC+GGG 0.295067 5_3:-65357877 Msa0825500:CDS
GTGCGCATGTTAGCACATTT+TGG 0.306100 5_3:-65358129 Msa0825500:CDS
GAAGAAGATGAAGGAGGTTC+AGG 0.311212 5_3:+65362188 None:intergenic
CGTGAGTAGGTTTAGATTAA+GGG 0.323549 5_3:-65357528 Msa0825500:CDS
CATGGTTAAGAGGTTTATTA+GGG 0.328702 5_3:-65357502 Msa0825500:CDS
CTCGCCTTCGCGAGATTAGA+TGG 0.334905 5_3:-65358037 Msa0825500:CDS
GCAGGAATGGGCCCGGGTAT+TGG 0.339605 5_3:+65357980 None:intergenic
TCTACATTGCTATTATTAAT+GGG 0.340728 5_3:-65358009 Msa0825500:CDS
TCCAACCATGGTCTTCTATT+CGG 0.353047 5_3:-65358106 Msa0825500:CDS
ACATCACGTAATAGAATCTC+TGG 0.371896 5_3:+65357662 None:intergenic
ATAACATATTCTGGTGGGTC+TGG 0.372539 5_3:-65357458 Msa0825500:CDS
GGCAGCGGCAGATGAGGTTT+TGG 0.378783 5_3:+65358224 None:intergenic
ACGGAACAGCGCGTGTTTGT+TGG 0.386206 5_3:-65357830 Msa0825500:CDS
AGGATTCATTGTAGGATCAT+TGG 0.389444 5_3:-65357627 Msa0825500:CDS
AGCTACTACAAATTCTCTTT+CGG 0.392581 5_3:+65357724 None:intergenic
CGTGATGTAGTGTCCATAAC+AGG 0.395954 5_3:-65357647 Msa0825500:CDS
GGTTTAGATTAAGGGCTTCA+TGG 0.398867 5_3:-65357520 Msa0825500:CDS
AGCTTGCACAAGTGCAAGAT+TGG 0.405830 5_3:-65357705 Msa0825500:CDS
CACCGGGAGACATGCTTTAG+TGG 0.414725 5_3:-65358275 Msa0825500:CDS
CCCGAAACGGATTGTGAAAA+CGG 0.417479 5_3:+65358082 None:intergenic
ACCGACCGGTTCAACTAATT+CGG 0.424968 5_3:+65357760 None:intergenic
ATATGCTGGCCACGCGGGCG+GGG 0.425858 5_3:-65357876 Msa0825500:CDS
AGAGGCTCACGAGACGCATC+TGG 0.428365 5_3:-65358372 Msa0825500:CDS
GTAGCCAATGCTTCAACAAC+AGG 0.432980 5_3:+65362128 None:intergenic
TCCAATTACAATTCCCGAAA+CGG 0.436742 5_3:+65358069 None:intergenic
GGCTCTAGTCGTTGGTGGGT+TGG 0.439072 5_3:-65357902 Msa0825500:CDS
TTCATTAACCGATCCTGAAA+CGG 0.439652 5_3:-65357804 Msa0825500:CDS
TCCTACAATGAATCCTGTTA+TGG 0.441153 5_3:+65357634 None:intergenic
TCTCCCGGTGGTAAAGTTCC+TGG 0.441224 5_3:+65358288 None:intergenic
CCATTAATTGCCCGTCGTGC+AGG 0.443293 5_3:+65357962 None:intergenic
TTAAGGGCTTCATGGTTAAG+AGG 0.447013 5_3:-65357512 Msa0825500:CDS
AATTGCCCGTCGTGCAGGAA+TGG 0.458917 5_3:+65357967 None:intergenic
ATTGCCCGTCGTGCAGGAAT+GGG 0.459648 5_3:+65357968 None:intergenic
ATGGGCCCGGGTATTGGTCC+AGG 0.465999 5_3:+65357986 None:intergenic
TGGTGGGTTGGTTTATATGC+TGG 0.470180 5_3:-65357890 Msa0825500:CDS
TGAACCTGTTGTTGAAGCAT+TGG 0.473412 5_3:-65362132 Msa0825500:CDS
GTTAACCGAATTAGTTGAAC+CGG 0.476077 5_3:-65357765 Msa0825500:CDS
CAAATTCTCTTTCGGTGACT+CGG 0.479960 5_3:+65357732 None:intergenic
ATTGATGCTTCTCATTATCA+TGG 0.480019 5_3:-65362095 Msa0825500:CDS
TTGCCGGCTCTAGTCGTTGG+TGG 0.480637 5_3:-65357907 Msa0825500:CDS
TTATATGCTGGCCACGCGGG+CGG 0.480797 5_3:-65357878 Msa0825500:CDS
GAGGAAGAAGCAACATCATA+AGG 0.481607 5_3:+65362254 None:intergenic
GTCTGGTTTGTTGAGAGTGT+GGG 0.482663 5_3:-65357441 Msa0825500:CDS
TGCCGGCTCTAGTCGTTGGT+GGG 0.484033 5_3:-65357906 Msa0825500:CDS
ATGATAATGAGAAGCATCAA+TGG 0.484575 5_3:+65362097 None:intergenic
ATTGCTATTATTAATGGGCC+TGG 0.486088 5_3:-65358004 Msa0825500:CDS
CGACGAAGCCGCAGGCGAGG+TGG 0.487527 5_3:+65358185 None:intergenic
GGAGTATTAGTAGAATTTGC+CGG 0.490167 5_3:-65357923 Msa0825500:CDS
TCCTTGAACCGTTTCAGGAT+CGG 0.492892 5_3:+65357796 None:intergenic
ACCGATCCTGAAACGGTTCA+AGG 0.493310 5_3:-65357797 Msa0825500:CDS
ATCTAATCTCGCGAAGGCGA+GGG 0.494316 5_3:+65358039 None:intergenic
TCAAATATGGGACGCGCACA+CGG 0.496233 5_3:-65357849 Msa0825500:CDS
CCGAAACGGATTGTGAAAAC+GGG 0.497568 5_3:+65358083 None:intergenic
CATCTAATCTCGCGAAGGCG+AGG 0.498179 5_3:+65358038 None:intergenic
TGATCTCCTGGATCATATTG+TGG 0.499584 5_3:+65358250 None:intergenic
AACGTGCTATGAATGAAGTA+TGG 0.501621 5_3:-65362157 Msa0825500:CDS
GATGGAGAAGGACAAGTTCA+TGG 0.504139 5_3:-65357368 Msa0825500:CDS
GAACAGCGCGTGTTTGTTGG+CGG 0.505393 5_3:-65357827 Msa0825500:CDS
TGTCGGAGAGAGTGAGGCAG+CGG 0.506671 5_3:+65358209 None:intergenic
TCCATAACAGGATTCATTGT+AGG 0.509536 5_3:-65357635 Msa0825500:CDS
GGAGTAATTGAAGGTGAAGA+TGG 0.509585 5_3:+65362275 None:intergenic
GGTCTGGTTTGTTGAGAGTG+TGG 0.510453 5_3:-65357442 Msa0825500:CDS
AACCCACCAACGACTAGAGC+CGG 0.516179 5_3:+65357904 None:intergenic
CTCGCCTGCGGCTTCGTCGA+CGG 0.523192 5_3:-65358181 Msa0825500:CDS
TGATGAGAAGTGCTAGGGCC+AGG 0.527006 5_3:+65362212 None:intergenic
GAGTGAGGCAGCGGCAGATG+AGG 0.527259 5_3:+65358218 None:intergenic
GTTCGGATCTACTGTGGCAG+AGG 0.528047 5_3:-65358390 Msa0825500:CDS
GACGAAGCCGCAGGCGAGGT+GGG 0.529764 5_3:+65358186 None:intergenic
CTTCTCCATCATCTCTTACA+GGG 0.532113 5_3:+65357381 None:intergenic
GGCGCAGAACATATAGATTG+AGG 0.532902 5_3:-65358351 Msa0825500:CDS
GGCAGTTAGAATACATCTAC+TGG 0.534095 5_3:-65358321 Msa0825500:CDS
GTGGTCCCACAATATGATCC+AGG 0.534362 5_3:-65358256 Msa0825500:CDS
GCCGCAGGCGAGGTGGGTGT+CGG 0.536831 5_3:+65358192 None:intergenic
ATGGAGAGAAGTGTCACGTT+CGG 0.540623 5_3:-65358407 Msa0825500:CDS
TGGTTGTGATGAAGAAGAAG+AGG 0.543717 5_3:+65362295 None:intergenic
GCGCAGAACATATAGATTGA+GGG 0.543876 5_3:-65358350 Msa0825500:CDS
GATCTCCTGGATCATATTGT+GGG 0.544786 5_3:+65358251 None:intergenic
CGTCGTGCAGGAATGGGCCC+GGG 0.546050 5_3:+65357974 None:intergenic
AATTTGCCGGCTCTAGTCGT+TGG 0.546832 5_3:-65357910 Msa0825500:CDS
GTGGTGGAAAGAAGTGGTGT+TGG 0.551066 5_3:-65357581 Msa0825500:CDS
ATGTTATAACATATTCTGGT+GGG 0.553968 5_3:-65357463 Msa0825500:CDS
TCAGGTTGATGAGAAGTGCT+AGG 0.553999 5_3:+65362206 None:intergenic
AATGGGCCTGGACCAATACC+CGG 0.556865 5_3:-65357992 Msa0825500:CDS
GCCGAATAGAAGACCATGGT+TGG 0.558339 5_3:+65358105 None:intergenic
ACATCATAAGGAGTAATTGA+AGG 0.563591 5_3:+65362266 None:intergenic
TCTACTGGCATCGAACGGCC+AGG 0.565427 5_3:-65358306 Msa0825500:CDS
TTTGTTGTGGTGGAAAGAAG+TGG 0.565574 5_3:-65357587 Msa0825500:CDS
TGGCGAGAGGAAGAAGATGA+AGG 0.567730 5_3:+65362179 None:intergenic
GAAGTGGTGTTGGAACTGTT+CGG 0.568741 5_3:-65357571 Msa0825500:CDS
GGTGGGTGTCGGAGAGAGTG+AGG 0.568818 5_3:+65358203 None:intergenic
CGTCGACGAAGCCGCAGGCG+AGG 0.570217 5_3:+65358182 None:intergenic
GGTTTATATGCTGGCCACGC+GGG 0.573762 5_3:-65357881 Msa0825500:CDS
ATGGGCCTGGACCAATACCC+GGG 0.577553 5_3:-65357991 Msa0825500:CDS
GTGACTCGGACTCGACCGAC+CGG 0.586956 5_3:+65357746 None:intergenic
GACCACTAAAGCATGTCTCC+CGG 0.592351 5_3:+65358273 None:intergenic
GCATGCAGGTTTGTTCAACA+TGG 0.597878 5_3:-65358426 Msa0825500:intron
AATGTCAGCAGCAACATTTG+AGG 0.598135 5_3:+65362235 None:intergenic
ATCCTGAAACGGTTCAAGGA+TGG 0.599732 5_3:-65357793 Msa0825500:CDS
ACTGCCGTCGACGAAGCCGC+AGG 0.600288 5_3:+65358177 None:intergenic
ACGGCCAGGAACTTTACCAC+CGG 0.601863 5_3:-65358292 Msa0825500:CDS
CGGCCAGGAACTTTACCACC+GGG 0.607000 5_3:-65358291 Msa0825500:CDS
CAGGTTGATGAGAAGTGCTA+GGG 0.609841 5_3:+65362207 None:intergenic
TGCTAACATGCGCACCGGTG+TGG 0.610945 5_3:+65358137 None:intergenic
TCCGACACCCACCTCGCCTG+CGG 0.615146 5_3:-65358193 Msa0825500:CDS
CCTGTAAGAGATGATGGAGA+AGG 0.615224 5_3:-65357380 Msa0825500:CDS
AAATGTGCTAACATGCGCAC+CGG 0.619108 5_3:+65358132 None:intergenic
ATCTCCATCTAATCTCGCGA+AGG 0.620003 5_3:+65358033 None:intergenic
TATGTTATAACATATTCTGG+TGG 0.621514 5_3:-65357464 Msa0825500:CDS
ATTCATAGCACGTTGGCGAG+AGG 0.622029 5_3:+65362166 None:intergenic
ACAAGTTCATGGTAATAGCA+TGG 0.622828 5_3:-65357357 Msa0825500:CDS
AATGGTGATGTTGTCAATAG+CGG 0.624686 5_3:-65357944 Msa0825500:CDS
ATCATTGGATGTTAGCCATG+AGG 0.625954 5_3:-65357612 Msa0825500:CDS
TGGTTTATATGCTGGCCACG+CGG 0.637470 5_3:-65357882 Msa0825500:CDS
CATCACGTAATAGAATCTCT+GGG 0.640810 5_3:+65357663 None:intergenic
CATATAGATTGAGGGACACG+TGG 0.643287 5_3:-65358342 Msa0825500:CDS
CGGTGTGGAGATCGAAGAGT+CGG 0.650728 5_3:+65358152 None:intergenic
CCGGGCCCATTCCTGCACGA+CGG 0.655323 5_3:-65357973 Msa0825500:CDS
ATACATCTACTGGCATCGAA+CGG 0.658565 5_3:-65358311 Msa0825500:CDS
CGAGAGGAAGAAGATGAAGG+AGG 0.662653 5_3:+65362182 None:intergenic
CGACTCTTCGATCTCCACAC+CGG 0.677791 5_3:-65358151 Msa0825500:CDS
ACCGAATTAGTTGAACCGGT+CGG 0.683053 5_3:-65357761 Msa0825500:CDS
TGTCACGTTCGGATCTACTG+TGG 0.685634 5_3:-65358396 Msa0825500:CDS
GTGGGACATACATGAACCTG+CGG 0.688958 5_3:-65357423 Msa0825500:CDS
CACTAAAGCATGTCTCCCGG+TGG 0.706707 5_3:+65358276 None:intergenic
GGTTGCTAATCAAACTCACG+TGG 0.706916 5_3:-65357336 Msa0825500:CDS
ACGGGCCGAATAGAAGACCA+TGG 0.711737 5_3:+65358101 None:intergenic
ATACTTCATTCATAGCACGT+TGG 0.720163 5_3:+65362159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTTAATATAATCAAAT+AGG - chr5_3:65357624-65357643 Msa0825500:CDS 10.0%
!!! TCTTATTATTTTTACATAAA+GGG + chr5_3:65357834-65357853 None:intergenic 10.0%
!!! TTCTTATTATTTTTACATAA+AGG + chr5_3:65357835-65357854 None:intergenic 10.0%
!!! TTTGAATTTTTTTTTTTTGA+AGG - chr5_3:65358863-65358882 Msa0825500:intron 10.0%
!!! AATAATACAAGAAATATTTT+AGG - chr5_3:65359034-65359053 Msa0825500:intron 10.0%
!!! AGAGTATTATAATTATATAA+TGG - chr5_3:65359454-65359473 Msa0825500:intron 10.0%
!!! AAACCTATTTTAAAATTAAA+TGG + chr5_3:65359647-65359666 None:intergenic 10.0%
!! TATAATACCAAATGAAAAAA+AGG + chr5_3:65358185-65358204 None:intergenic 15.0%
!!! TTAGTTTCTAAAAACATTTA+AGG - chr5_3:65358831-65358850 Msa0825500:intron 15.0%
!!! TTTCACTCAATTTTTTTTTA+GGG + chr5_3:65359159-65359178 None:intergenic 15.0%
!!! TTTTCACTCAATTTTTTTTT+AGG + chr5_3:65359160-65359179 None:intergenic 15.0%
!!! ACAAAAAAAAAAAGTGTATT+TGG + chr5_3:65359362-65359381 None:intergenic 15.0%
!! AATTATATAATGGCATAAAA+TGG - chr5_3:65359464-65359483 Msa0825500:intron 15.0%
!! ATCATACTATTTAATGTATT+GGG + chr5_3:65359600-65359619 None:intergenic 15.0%
!! TATCATACTATTTAATGTAT+TGG + chr5_3:65359601-65359620 None:intergenic 15.0%
!!! GATCCATTTAATTTTAAAAT+AGG - chr5_3:65359641-65359660 Msa0825500:intron 15.0%
!!! ATTAATATTACTTGTTAGTA+AGG + chr5_3:65359859-65359878 None:intergenic 15.0%
!! TTATACACAATATATTTACA+TGG - chr5_3:65360069-65360088 Msa0825500:intron 15.0%
!! AATGAAATATTAGTAAAACA+TGG + chr5_3:65360400-65360419 None:intergenic 15.0%
!! ATAAAATTTATGATATGATG+TGG + chr5_3:65360520-65360539 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_3:65360658-65360677 None:intergenic 15.0%
!!! GTCAATTTTCTATTTAATTT+TGG - chr5_3:65360974-65360993 Msa0825500:intron 15.0%
!!! TTTTTTTTTTTTGCATGATA+TGG - chr5_3:65361117-65361136 Msa0825500:intron 15.0%
!!! TTTTTTTTTTTGCATGATAT+GGG - chr5_3:65361118-65361137 Msa0825500:intron 15.0%
!! ACAAAATAATTCTTCATTGT+TGG + chr5_3:65357675-65357694 None:intergenic 20.0%
!! AAAATACTGTTCCTTAAAAA+CGG - chr5_3:65358067-65358086 Msa0825500:CDS 20.0%
!! CATTTGGTATTATATGAAAA+AGG - chr5_3:65358191-65358210 Msa0825500:CDS 20.0%
!! TATCTAATCTAATAAATCCA+TGG - chr5_3:65358293-65358312 Msa0825500:CDS 20.0%
!!! GATGTTTTTAGATAGAAAAA+AGG + chr5_3:65358323-65358342 None:intergenic 20.0%
!!! TTGTTTTCTTAAATAACACA+AGG - chr5_3:65358376-65358395 Msa0825500:CDS 20.0%
!!! CAATGAAAATGTACAATTTT+TGG - chr5_3:65358519-65358538 Msa0825500:intron 20.0%
!! ATAATAATATGAAACCAAAC+CGG + chr5_3:65358546-65358565 None:intergenic 20.0%
!! TTTCTACGAATAAAATCTTA+GGG + chr5_3:65358638-65358657 None:intergenic 20.0%
!! ATTTCTACGAATAAAATCTT+AGG + chr5_3:65358639-65358658 None:intergenic 20.0%
!!! GTTTGAATTGTTATTATTGT+TGG - chr5_3:65358895-65358914 Msa0825500:intron 20.0%
!!! AAGAACAATACCTTTTTTAA+GGG + chr5_3:65358954-65358973 None:intergenic 20.0%
!!! TAAGAACAATACCTTTTTTA+AGG + chr5_3:65358955-65358974 None:intergenic 20.0%
!!! TAGAATTGATTCTAATTGAA+GGG + chr5_3:65359272-65359291 None:intergenic 20.0%
!!! TTTTTTTTTAAGAAAGGAGA+CGG - chr5_3:65359429-65359448 Msa0825500:intron 20.0%
!!! TTTTAAATTGTTTCTTCCTT+TGG - chr5_3:65360100-65360119 Msa0825500:intron 20.0%
!!! TTTAAATTGTTTCTTCCTTT+GGG - chr5_3:65360101-65360120 Msa0825500:intron 20.0%
!! AAATGAAAGTGAAATATATG+TGG - chr5_3:65360341-65360360 Msa0825500:intron 20.0%
!! AATGAAAGTGAAATATATGT+GGG - chr5_3:65360342-65360361 Msa0825500:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_3:65360588-65360607 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr5_3:65360624-65360643 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr5_3:65360625-65360644 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr5_3:65360698-65360717 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG + chr5_3:65360722-65360741 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG + chr5_3:65360723-65360742 None:intergenic 20.0%
!!! TCTACATTGCTATTATTAAT+GGG - chr5_3:65361585-65361604 Msa0825500:intron 20.0%
! AAATGTGACCTGAAAAATAA+TGG + chr5_3:65357551-65357570 None:intergenic 25.0%
! AATCAAATAGGTCATGTTTA+AGG - chr5_3:65357636-65357655 Msa0825500:CDS 25.0%
! TCAGAAAATGGACAAATTAT+TGG - chr5_3:65357761-65357780 Msa0825500:CDS 25.0%
! ATTGAATGTACCAATGTATT+GGG + chr5_3:65357986-65358005 None:intergenic 25.0%
! AATTGAATGTACCAATGTAT+TGG + chr5_3:65357987-65358006 None:intergenic 25.0%
! GTACATTCAATTCAACTAAT+TGG - chr5_3:65357995-65358014 Msa0825500:CDS 25.0%
! TCAATTCAACTAATTGGATT+AGG - chr5_3:65358001-65358020 Msa0825500:CDS 25.0%
!! TTTAAGGAACAGTATTTTCT+AGG + chr5_3:65358065-65358084 None:intergenic 25.0%
! AATACCAAATGAAAAAAAGG+AGG + chr5_3:65358182-65358201 None:intergenic 25.0%
!!! ATTTTGATGTTTACCTTTCT+TGG - chr5_3:65358220-65358239 Msa0825500:CDS 25.0%
! TTAAAAAGCTCAGTCAAAAT+AGG + chr5_3:65358254-65358273 None:intergenic 25.0%
!! TTTTCTTAAATAACACAAGG+AGG - chr5_3:65358379-65358398 Msa0825500:CDS 25.0%
! TTTCTTAAATAACACAAGGA+GGG - chr5_3:65358380-65358399 Msa0825500:CDS 25.0%
!! TAAAACAGTAGAGTACTATA+TGG + chr5_3:65358450-65358469 None:intergenic 25.0%
!!! AAAATGTACAATTTTTGGTC+CGG - chr5_3:65358524-65358543 Msa0825500:intron 25.0%
! ATTCTGAATTCAAATCCAAA+AGG + chr5_3:65358701-65358720 None:intergenic 25.0%
! TGAGTAAAATGACATTATTC+AGG + chr5_3:65358753-65358772 None:intergenic 25.0%
! ATCTTCTAATCCCTTAAAAA+AGG - chr5_3:65358941-65358960 Msa0825500:intron 25.0%
! CACAGACAAAAAAAAAAGTT+GGG + chr5_3:65359099-65359118 None:intergenic 25.0%
! ACACAGACAAAAAAAAAAGT+TGG + chr5_3:65359100-65359119 None:intergenic 25.0%
!!! CTTTTTTTTTTGTCTGTGTT+AGG - chr5_3:65359101-65359120 Msa0825500:intron 25.0%
!! GTAGAATTGATTCTAATTGA+AGG + chr5_3:65359273-65359292 None:intergenic 25.0%
!!! AGTGTATTTGGTTCTAATTT+TGG + chr5_3:65359350-65359369 None:intergenic 25.0%
! TATAAAAGCCAAAAATCACA+TGG - chr5_3:65359504-65359523 Msa0825500:intron 25.0%
! ATATGCATATATATGTGCTT+GGG + chr5_3:65359706-65359725 None:intergenic 25.0%
! AATATGCATATATATGTGCT+TGG + chr5_3:65359707-65359726 None:intergenic 25.0%
! TTTAAAAAGTGAACTACTCT+TGG - chr5_3:65359906-65359925 Msa0825500:intron 25.0%
! TTTCATTTCCAATAAAGGTA+TGG + chr5_3:65360329-65360348 None:intergenic 25.0%
! TTCACTTTCATTTCCAATAA+AGG + chr5_3:65360334-65360353 None:intergenic 25.0%
! ATGAAAGTGAAATATATGTG+GGG - chr5_3:65360343-65360362 Msa0825500:intron 25.0%
! ACTAGCATTAGATTAATATG+AGG + chr5_3:65360485-65360504 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_3:65360589-65360608 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr5_3:65360699-65360718 None:intergenic 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG + chr5_3:65360721-65360740 None:intergenic 25.0%
! GAAGATATTCTCAATCAAAA+AGG + chr5_3:65360839-65360858 None:intergenic 25.0%
! ATTCTTCCATAGATAAGATA+TGG + chr5_3:65360864-65360883 None:intergenic 25.0%
! AATAGAAAATTGACTGTTCA+AGG + chr5_3:65360968-65360987 None:intergenic 25.0%
! TAGAATATGCATATAGGTAT+AGG + chr5_3:65361002-65361021 None:intergenic 25.0%
! ACACTATAGAATATGCATAT+AGG + chr5_3:65361008-65361027 None:intergenic 25.0%
!! GTCTACATTGCTATTATTAA+TGG - chr5_3:65361584-65361603 Msa0825500:intron 25.0%
! TATGTTATAACATATTCTGG+TGG - chr5_3:65362130-65362149 Msa0825500:CDS 25.0%
! ATGTTATAACATATTCTGGT+GGG - chr5_3:65362131-65362150 Msa0825500:CDS 25.0%
! TGACTCTTCTATACATTTAT+TGG - chr5_3:65362294-65362313 Msa0825500:CDS 25.0%
ACATCATAAGGAGTAATTGA+AGG + chr5_3:65357331-65357350 None:intergenic 30.0%
!! ATGATAATGAGAAGCATCAA+TGG + chr5_3:65357500-65357519 None:intergenic 30.0%
ATTGATGCTTCTCATTATCA+TGG - chr5_3:65357499-65357518 Msa0825500:CDS 30.0%
! ATTTTCTGAACTGAAAAAGC+TGG + chr5_3:65357750-65357769 None:intergenic 30.0%
!!! AGCTTTTTCAGTTCAGAAAA+TGG - chr5_3:65357749-65357768 Msa0825500:CDS 30.0%
!!! CTTAAAAGTAGCCGTTTTTA+AGG + chr5_3:65358081-65358100 None:intergenic 30.0%
!!! CTTAAAAACGGCTACTTTTA+AGG - chr5_3:65358079-65358098 Msa0825500:CDS 30.0%
! CATTTACCCTTTTTGTGAAA+GGG + chr5_3:65358133-65358152 None:intergenic 30.0%
! ACATTTACCCTTTTTGTGAA+AGG + chr5_3:65358134-65358153 None:intergenic 30.0%
! TTTTCTTGTATGTTCTGTCT+TGG - chr5_3:65358155-65358174 Msa0825500:CDS 30.0%
!! GCTTTTTACTTTGTTTCAGA+AGG - chr5_3:65358352-65358371 Msa0825500:CDS 30.0%
! TAGAGTACTATATGGTAGAA+AGG + chr5_3:65358442-65358461 None:intergenic 30.0%
CTCTAACTAACTATGTAAAG+TGG + chr5_3:65358499-65358518 None:intergenic 30.0%
! TCAGAATAGTACTCACATTT+TGG - chr5_3:65358714-65358733 Msa0825500:intron 30.0%
! TGCTTAATTTTACCACGAAT+GGG + chr5_3:65358802-65358821 None:intergenic 30.0%
TTAAGGGATTAGAAGATCAA+TGG + chr5_3:65358938-65358957 None:intergenic 30.0%
!!! GTATTTGGTTCTAATTTTGG+AGG + chr5_3:65359347-65359366 None:intergenic 30.0%
ACATGTGTATTCAATTGACA+GGG + chr5_3:65359395-65359414 None:intergenic 30.0%
TACATGTGTATTCAATTGAC+AGG + chr5_3:65359396-65359415 None:intergenic 30.0%
! ATTGGAATCCATGTGATTTT+TGG + chr5_3:65359515-65359534 None:intergenic 30.0%
AACATAGGTACAAAAGGAAT+GGG + chr5_3:65359555-65359574 None:intergenic 30.0%
TAACATAGGTACAAAAGGAA+TGG + chr5_3:65359556-65359575 None:intergenic 30.0%
TATGCATATATATGTGCTTG+GGG + chr5_3:65359705-65359724 None:intergenic 30.0%
! TACAAAAGTGCATTTATCGA+AGG - chr5_3:65359812-65359831 Msa0825500:intron 30.0%
AAGTTTACTCTTAACACAGT+TGG - chr5_3:65359930-65359949 Msa0825500:intron 30.0%
AGTTTACTCTTAACACAGTT+GGG - chr5_3:65359931-65359950 Msa0825500:intron 30.0%
AATATTTCAATGCACACAAG+AGG + chr5_3:65360029-65360048 None:intergenic 30.0%
TGAGAATAACAAAAACCCAA+AGG + chr5_3:65360119-65360138 None:intergenic 30.0%
ATATTTGTCTTTAGGCTTGT+TGG - chr5_3:65360241-65360260 Msa0825500:intron 30.0%
!! AAGTTGATAGATTCTCTTGT+TGG - chr5_3:65360285-65360304 Msa0825500:intron 30.0%
TCTAATGCTAGTATAGACTA+TGG - chr5_3:65360493-65360512 Msa0825500:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr5_3:65360610-65360629 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr5_3:65360611-65360630 None:intergenic 30.0%
GATATTCTCAATCAAAAAGG+AGG + chr5_3:65360836-65360855 None:intergenic 30.0%
! ATGGGTCTTGATGTTTTATA+TGG - chr5_3:65361136-65361155 Msa0825500:intron 30.0%
! GTCTTGATGTTTTATATGGT+TGG - chr5_3:65361140-65361159 Msa0825500:intron 30.0%
AGCTACTACAAATTCTCTTT+CGG + chr5_3:65361873-65361892 None:intergenic 30.0%
TCATGGTTAAGAGGTTTATT+AGG - chr5_3:65362091-65362110 Msa0825500:CDS 30.0%
CATGGTTAAGAGGTTTATTA+GGG - chr5_3:65362092-65362111 Msa0825500:CDS 30.0%
TTATTAGGGTGCATGAATTT+AGG - chr5_3:65362106-65362125 Msa0825500:CDS 30.0%
TATTAGGGTGCATGAATTTA+GGG - chr5_3:65362107-65362126 Msa0825500:CDS 30.0%
GGGTATGTTATAACATATTC+TGG - chr5_3:65362127-65362146 Msa0825500:CDS 30.0%
ATACTTCATTCATAGCACGT+TGG + chr5_3:65357438-65357457 None:intergenic 35.0%
AACGTGCTATGAATGAAGTA+TGG - chr5_3:65357437-65357456 Msa0825500:CDS 35.0%
!! TGCTCTTGCCATTATTTTTC+AGG - chr5_3:65357540-65357559 Msa0825500:CDS 35.0%
GAACTTTAGACCCAATACAT+TGG - chr5_3:65357973-65357992 Msa0825500:CDS 35.0%
!!! AAAAACGGCTACTTTTAAGG+CGG - chr5_3:65358082-65358101 Msa0825500:CDS 35.0%
AAAGGGACACACATTTAGTT+TGG + chr5_3:65358116-65358135 None:intergenic 35.0%
!!! TGGACCTCCTTTTTTTCATT+TGG - chr5_3:65358175-65358194 Msa0825500:CDS 35.0%
ATAGGATTTCATGCCAAGAA+AGG + chr5_3:65358236-65358255 None:intergenic 35.0%
! ACAGCTTTTCTCTAGCTAAT+TGG - chr5_3:65358607-65358626 Msa0825500:intron 35.0%
TATTCGTAGAAATCTGCAGT+TGG - chr5_3:65358646-65358665 Msa0825500:intron 35.0%
ATTCGTAGAAATCTGCAGTT+GGG - chr5_3:65358647-65358666 Msa0825500:intron 35.0%
CTGAATTCAAATCCAAAAGG+TGG + chr5_3:65358698-65358717 None:intergenic 35.0%
! GTGCTTAATTTTACCACGAA+TGG + chr5_3:65358803-65358822 None:intergenic 35.0%
AGGAAAGTCTGCACATAAAA+TGG - chr5_3:65359054-65359073 Msa0825500:intron 35.0%
! TTTGTCTGTGTTAGGTTTTG+CGG - chr5_3:65359109-65359128 Msa0825500:intron 35.0%
ACATAGGTACAAAAGGAATG+GGG + chr5_3:65359554-65359573 None:intergenic 35.0%
GCTTCTAACATAGGTACAAA+AGG + chr5_3:65359561-65359580 None:intergenic 35.0%
CTATGTTAGAAGCTCTCATT+GGG - chr5_3:65359568-65359587 Msa0825500:intron 35.0%
ATGCATATATATGTGCTTGG+GGG + chr5_3:65359704-65359723 None:intergenic 35.0%
TCTTAACACAGTTGGGTTTA+GGG - chr5_3:65359938-65359957 Msa0825500:intron 35.0%
! ATTGCTACTCCTTTAGAAGA+TGG - chr5_3:65360173-65360192 Msa0825500:intron 35.0%
! TTGCTACTCCTTTAGAAGAT+GGG - chr5_3:65360174-65360193 Msa0825500:intron 35.0%
ATGACCGGATATTTGTCTTT+AGG - chr5_3:65360233-65360252 Msa0825500:intron 35.0%
CAAGCCTAAAGACAAATATC+CGG + chr5_3:65360240-65360259 None:intergenic 35.0%
! TTCCAATAAAGGTATGGTCA+AGG + chr5_3:65360323-65360342 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr5_3:65360575-65360594 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG + chr5_3:65360714-65360733 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr5_3:65360744-65360763 Msa0825500:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr5_3:65360757-65360776 Msa0825500:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr5_3:65360758-65360777 Msa0825500:intron 35.0%
TCAATCAAAAAGGAGGTAGT+TGG + chr5_3:65360829-65360848 None:intergenic 35.0%
CTTCCACCATATCTTATCTA+TGG - chr5_3:65360855-65360874 Msa0825500:intron 35.0%
CTTCCATAGATAAGATATGG+TGG + chr5_3:65360861-65360880 None:intergenic 35.0%
TCCAATTACAATTCCCGAAA+CGG + chr5_3:65361528-65361547 None:intergenic 35.0%
! ATTGCTATTATTAATGGGCC+TGG - chr5_3:65361590-65361609 Msa0825500:intron 35.0%
! AATGGTGATGTTGTCAATAG+CGG - chr5_3:65361650-65361669 Msa0825500:intron 35.0%
! GGAGTATTAGTAGAATTTGC+CGG - chr5_3:65361671-65361690 Msa0825500:intron 35.0%
TTCATTAACCGATCCTGAAA+CGG - chr5_3:65361790-65361809 Msa0825500:intron 35.0%
GTTAACCGAATTAGTTGAAC+CGG - chr5_3:65361829-65361848 Msa0825500:intron 35.0%
CATCACGTAATAGAATCTCT+GGG + chr5_3:65361934-65361953 None:intergenic 35.0%
ACATCACGTAATAGAATCTC+TGG + chr5_3:65361935-65361954 None:intergenic 35.0%
TCCATAACAGGATTCATTGT+AGG - chr5_3:65361959-65361978 Msa0825500:intron 35.0%
TCCTACAATGAATCCTGTTA+TGG + chr5_3:65361963-65361982 None:intergenic 35.0%
AGGATTCATTGTAGGATCAT+TGG - chr5_3:65361967-65361986 Msa0825500:intron 35.0%
CGTGAGTAGGTTTAGATTAA+GGG - chr5_3:65362066-65362085 Msa0825500:CDS 35.0%
ACAAGTTCATGGTAATAGCA+TGG - chr5_3:65362237-65362256 Msa0825500:CDS 35.0%
TGGTTGTGATGAAGAAGAAG+AGG + chr5_3:65357302-65357321 None:intergenic 40.0%
GGAGTAATTGAAGGTGAAGA+TGG + chr5_3:65357322-65357341 None:intergenic 40.0%
GAGGAAGAAGCAACATCATA+AGG + chr5_3:65357343-65357362 None:intergenic 40.0%
AATGTCAGCAGCAACATTTG+AGG + chr5_3:65357362-65357381 None:intergenic 40.0%
TGAACCTGTTGTTGAAGCAT+TGG - chr5_3:65357462-65357481 Msa0825500:CDS 40.0%
!!! AAAACGGCTACTTTTAAGGC+GGG - chr5_3:65358083-65358102 Msa0825500:CDS 40.0%
TGTGTGTCCCTTTCACAAAA+AGG - chr5_3:65358123-65358142 Msa0825500:CDS 40.0%
GTGTGTCCCTTTCACAAAAA+GGG - chr5_3:65358124-65358143 Msa0825500:CDS 40.0%
GATAGAAAAAAGGCAAGCCA+TGG + chr5_3:65358313-65358332 None:intergenic 40.0%
!!! GTACAATTTTTGGTCCGGTT+TGG - chr5_3:65358529-65358548 Msa0825500:intron 40.0%
TCAATTGAGTGCAAAGTGTG+TGG - chr5_3:65358583-65358602 Msa0825500:intron 40.0%
! AAGTGGTTAGATCCACCTTT+TGG - chr5_3:65358683-65358702 Msa0825500:intron 40.0%
GTAGAATCATTACCCATTCG+TGG - chr5_3:65358787-65358806 Msa0825500:intron 40.0%
GGTATTGTCAAGGCAAGAAT+TGG + chr5_3:65359533-65359552 None:intergenic 40.0%
!! AAAGGAATGGGGTATTGTCA+AGG + chr5_3:65359543-65359562 None:intergenic 40.0%
CCAATGAGAGCTTCTAACAT+AGG + chr5_3:65359570-65359589 None:intergenic 40.0%
CCTATGTTAGAAGCTCTCAT+TGG - chr5_3:65359567-65359586 Msa0825500:intron 40.0%
TGCATATATATGTGCTTGGG+GGG + chr5_3:65359703-65359722 None:intergenic 40.0%
CTCTTAACACAGTTGGGTTT+AGG - chr5_3:65359937-65359956 Msa0825500:intron 40.0%
! TGCTACTCCTTTAGAAGATG+GGG - chr5_3:65360175-65360194 Msa0825500:intron 40.0%
CATGTAGCAAGAAAGATGAC+CGG - chr5_3:65360218-65360237 Msa0825500:intron 40.0%
!! TTTGTCTTTAGGCTTGTTGG+AGG - chr5_3:65360244-65360263 Msa0825500:intron 40.0%
!! TTGTCTTTAGGCTTGTTGGA+GGG - chr5_3:65360245-65360264 Msa0825500:intron 40.0%
AGCCTTGACCATACCTTTAT+TGG - chr5_3:65360318-65360337 Msa0825500:intron 40.0%
ATCAAAAGCTATAGCTAGCG+TGG + chr5_3:65360371-65360390 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr5_3:65360574-65360593 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr5_3:65360760-65360779 None:intergenic 40.0%
! CGGAGGGAGTATATGATAAT+AGG - chr5_3:65360782-65360801 Msa0825500:intron 40.0%
ATGTTGTGTTCCCATTCAGA+GGG + chr5_3:65360943-65360962 None:intergenic 40.0%
TATGGTTGGAAAATGCATGC+AGG - chr5_3:65361154-65361173 Msa0825500:intron 40.0%
GCGCAGAACATATAGATTGA+GGG - chr5_3:65361244-65361263 Msa0825500:intron 40.0%
GGCAGTTAGAATACATCTAC+TGG - chr5_3:65361273-65361292 Msa0825500:intron 40.0%
! ATACATCTACTGGCATCGAA+CGG - chr5_3:65361283-65361302 Msa0825500:intron 40.0%
GATCTCCTGGATCATATTGT+GGG + chr5_3:65361346-65361365 None:intergenic 40.0%
TGATCTCCTGGATCATATTG+TGG + chr5_3:65361347-65361366 None:intergenic 40.0%
TCCAACCATGGTCTTCTATT+CGG - chr5_3:65361488-65361507 Msa0825500:intron 40.0%
TCCGTTTCGGGAATTGTAAT+TGG - chr5_3:65361524-65361543 Msa0825500:intron 40.0%
CAAATTCTCTTTCGGTGACT+CGG + chr5_3:65361865-65361884 None:intergenic 40.0%
ATCATTGGATGTTAGCCATG+AGG - chr5_3:65361982-65362001 Msa0825500:intron 40.0%
! TAGCCATGAGGTTTTTGTTG+TGG - chr5_3:65361994-65362013 Msa0825500:intron 40.0%
! TTTGTTGTGGTGGAAAGAAG+TGG - chr5_3:65362007-65362026 Msa0825500:intron 40.0%
! ATAATTTTGAGCGCGTGAGT+AGG - chr5_3:65362053-65362072 Msa0825500:intron 40.0%
GCGTGAGTAGGTTTAGATTA+AGG - chr5_3:65362065-65362084 Msa0825500:CDS 40.0%
GGTTTAGATTAAGGGCTTCA+TGG - chr5_3:65362074-65362093 Msa0825500:CDS 40.0%
TTAAGGGCTTCATGGTTAAG+AGG - chr5_3:65362082-65362101 Msa0825500:CDS 40.0%
! ATAACATATTCTGGTGGGTC+TGG - chr5_3:65362136-65362155 Msa0825500:CDS 40.0%
CTTCTCCATCATCTCTTACA+GGG + chr5_3:65362216-65362235 None:intergenic 40.0%
AATGTTGCTGCTGACATTCC+TGG - chr5_3:65357364-65357383 Msa0825500:CDS 45.0%
!! CAGGTTGATGAGAAGTGCTA+GGG + chr5_3:65357390-65357409 None:intergenic 45.0%
!! TCAGGTTGATGAGAAGTGCT+AGG + chr5_3:65357391-65357410 None:intergenic 45.0%
GAAGAAGATGAAGGAGGTTC+AGG + chr5_3:65357409-65357428 None:intergenic 45.0%
GTAGCCAATGCTTCAACAAC+AGG + chr5_3:65357469-65357488 None:intergenic 45.0%
GTATCTGCGTATATCTCTGC+AGG + chr5_3:65357812-65357831 None:intergenic 45.0%
GTAGAAATCTGCAGTTGGGT+TGG - chr5_3:65358651-65358670 Msa0825500:intron 45.0%
!! AATCTGCAGTTGGGTTGGAT+CGG - chr5_3:65358656-65358675 Msa0825500:intron 45.0%
CCATCAACCCCATCTTCTAA+AGG + chr5_3:65360185-65360204 None:intergenic 45.0%
! CCTTTAGAAGATGGGGTTGA+TGG - chr5_3:65360182-65360201 Msa0825500:intron 45.0%
!! TGGGGTTGATGGTTTGTTAG+TGG - chr5_3:65360193-65360212 Msa0825500:intron 45.0%
!! TGTCTTTAGGCTTGTTGGAG+GGG - chr5_3:65360246-65360265 Msa0825500:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr5_3:65360762-65360781 Msa0825500:intron 45.0%
AAGGAGGTAGTTGGATGAGA+TGG + chr5_3:65360820-65360839 None:intergenic 45.0%
GATGTTGTGTTCCCATTCAG+AGG + chr5_3:65360944-65360963 None:intergenic 45.0%
! GCATGCAGGTTTGTTCAACA+TGG - chr5_3:65361168-65361187 Msa0825500:intron 45.0%
!! ATGGAGAGAAGTGTCACGTT+CGG - chr5_3:65361187-65361206 Msa0825500:intron 45.0%
GGCGCAGAACATATAGATTG+AGG - chr5_3:65361243-65361262 Msa0825500:intron 45.0%
CATATAGATTGAGGGACACG+TGG - chr5_3:65361252-65361271 Msa0825500:intron 45.0%
AAATGTGCTAACATGCGCAC+CGG + chr5_3:65361465-65361484 None:intergenic 45.0%
! GTGCGCATGTTAGCACATTT+TGG - chr5_3:65361465-65361484 Msa0825500:intron 45.0%
!! AGCACATTTTGGTCCAACCA+TGG - chr5_3:65361476-65361495 Msa0825500:intron 45.0%
!! CCGAAACGGATTGTGAAAAC+GGG + chr5_3:65361514-65361533 None:intergenic 45.0%
! CCCGTTTTCACAATCCGTTT+CGG - chr5_3:65361511-65361530 Msa0825500:intron 45.0%
!! CCCGAAACGGATTGTGAAAA+CGG + chr5_3:65361515-65361534 None:intergenic 45.0%
! CCGTTTTCACAATCCGTTTC+GGG - chr5_3:65361512-65361531 Msa0825500:intron 45.0%
ATCTCCATCTAATCTCGCGA+AGG + chr5_3:65361564-65361583 None:intergenic 45.0%
!! TGGTGGGTTGGTTTATATGC+TGG - chr5_3:65361704-65361723 Msa0825500:intron 45.0%
TCCTTGAACCGTTTCAGGAT+CGG + chr5_3:65361801-65361820 None:intergenic 45.0%
ATCCTGAAACGGTTCAAGGA+TGG - chr5_3:65361801-65361820 Msa0825500:intron 45.0%
ACCGAATTAGTTGAACCGGT+CGG - chr5_3:65361833-65361852 Msa0825500:intron 45.0%
! ACCGACCGGTTCAACTAATT+CGG + chr5_3:65361837-65361856 None:intergenic 45.0%
AGCTTGCACAAGTGCAAGAT+TGG - chr5_3:65361889-65361908 Msa0825500:intron 45.0%
CGTGATGTAGTGTCCATAAC+AGG - chr5_3:65361947-65361966 Msa0825500:intron 45.0%
CCACCACAACAAAAACCTCA+TGG + chr5_3:65362000-65362019 None:intergenic 45.0%
!! CCATGAGGTTTTTGTTGTGG+TGG - chr5_3:65361997-65362016 Msa0825500:intron 45.0%
! GAAGTGGTGTTGGAACTGTT+CGG - chr5_3:65362023-65362042 Msa0825500:intron 45.0%
!! GTCTGGTTTGTTGAGAGTGT+GGG - chr5_3:65362153-65362172 Msa0825500:CDS 45.0%
CCTTCTCCATCATCTCTTAC+AGG + chr5_3:65362217-65362236 None:intergenic 45.0%
!! CCTGTAAGAGATGATGGAGA+AGG - chr5_3:65362214-65362233 Msa0825500:CDS 45.0%
GATGGAGAAGGACAAGTTCA+TGG - chr5_3:65362226-65362245 Msa0825500:CDS 45.0%
GGTTGCTAATCAAACTCACG+TGG - chr5_3:65362258-65362277 Msa0825500:CDS 45.0%
!!! TATAAAAATAATATTTCTTT+TGG - chr5_3:65357873-65357892 Msa0825500:CDS 5.0%
!!! AAATTAACAATTTTTTTTTT+TGG + chr5_3:65357925-65357944 None:intergenic 5.0%
!!! AATAATTTTTTTTTTAAGAA+AGG - chr5_3:65359423-65359442 Msa0825500:intron 5.0%
CGAGAGGAAGAAGATGAAGG+AGG + chr5_3:65357415-65357434 None:intergenic 50.0%
TGGCGAGAGGAAGAAGATGA+AGG + chr5_3:65357418-65357437 None:intergenic 50.0%
ATTCATAGCACGTTGGCGAG+AGG + chr5_3:65357431-65357450 None:intergenic 50.0%
!! ATCTGCAGTTGGGTTGGATC+GGG - chr5_3:65358657-65358676 Msa0825500:intron 50.0%
ATTGTATACTCCCTCCGTCC+CGG - chr5_3:65360553-65360572 Msa0825500:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr5_3:65360570-65360589 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG - chr5_3:65360766-65360785 Msa0825500:intron 50.0%
ATCATATACTCCCTCCGTCC+CGG + chr5_3:65360779-65360798 None:intergenic 50.0%
AATCGCACCTTCCCTCTGAA+TGG - chr5_3:65360929-65360948 Msa0825500:intron 50.0%
ATCGCACCTTCCCTCTGAAT+GGG - chr5_3:65360930-65360949 Msa0825500:intron 50.0%
TGTGTTCCCATTCAGAGGGA+AGG + chr5_3:65360939-65360958 None:intergenic 50.0%
TGTCACGTTCGGATCTACTG+TGG - chr5_3:65361198-65361217 Msa0825500:intron 50.0%
GACCACTAAAGCATGTCTCC+CGG + chr5_3:65361324-65361343 None:intergenic 50.0%
GTGGTCCCACAATATGATCC+AGG - chr5_3:65361338-65361357 Msa0825500:intron 50.0%
!!! AGGTTTTGGTGGTGATCTCC+TGG + chr5_3:65361359-65361378 None:intergenic 50.0%
GCCGAATAGAAGACCATGGT+TGG + chr5_3:65361492-65361511 None:intergenic 50.0%
ATCTAATCTCGCGAAGGCGA+GGG + chr5_3:65361558-65361577 None:intergenic 50.0%
!! AATTTGCCGGCTCTAGTCGT+TGG - chr5_3:65361684-65361703 Msa0825500:intron 50.0%
TGGTTTATATGCTGGCCACG+CGG - chr5_3:65361712-65361731 Msa0825500:intron 50.0%
! GGGCGGGGCTTTTCAAATAT+GGG - chr5_3:65361733-65361752 Msa0825500:intron 50.0%
TCAAATATGGGACGCGCACA+CGG - chr5_3:65361745-65361764 Msa0825500:intron 50.0%
ACCGATCCTGAAACGGTTCA+AGG - chr5_3:65361797-65361816 Msa0825500:intron 50.0%
TGCCATCCTTGAACCGTTTC+AGG + chr5_3:65361806-65361825 None:intergenic 50.0%
! GTGGTGGAAAGAAGTGGTGT+TGG - chr5_3:65362013-65362032 Msa0825500:intron 50.0%
!! GGTCTGGTTTGTTGAGAGTG+TGG - chr5_3:65362152-65362171 Msa0825500:CDS 50.0%
GTGGGACATACATGAACCTG+CGG - chr5_3:65362171-65362190 Msa0825500:CDS 50.0%
ACGCTCCCTGTAAGAGATGA+TGG - chr5_3:65362208-65362227 Msa0825500:CDS 50.0%
!! TGATGAGAAGTGCTAGGGCC+AGG + chr5_3:65357385-65357404 None:intergenic 55.0%
! TGGGTTGGATCGGGTAGAAG+TGG - chr5_3:65358666-65358685 Msa0825500:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr5_3:65360566-65360585 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr5_3:65360765-65360784 Msa0825500:intron 55.0%
GTTCGGATCTACTGTGGCAG+AGG - chr5_3:65361204-65361223 Msa0825500:intron 55.0%
ACGGCCAGGAACTTTACCAC+CGG - chr5_3:65361302-65361321 Msa0825500:intron 55.0%
TCTCCCGGTGGTAAAGTTCC+TGG + chr5_3:65361309-65361328 None:intergenic 55.0%
CACTAAAGCATGTCTCCCGG+TGG + chr5_3:65361321-65361340 None:intergenic 55.0%
CACCGGGAGACATGCTTTAG+TGG - chr5_3:65361319-65361338 Msa0825500:intron 55.0%
!! AGCGGCAGATGAGGTTTTGG+TGG + chr5_3:65361370-65361389 None:intergenic 55.0%
CGGTGTGGAGATCGAAGAGT+CGG + chr5_3:65361445-65361464 None:intergenic 55.0%
CGACTCTTCGATCTCCACAC+CGG - chr5_3:65361443-65361462 Msa0825500:intron 55.0%
ACGGGCCGAATAGAAGACCA+TGG + chr5_3:65361496-65361515 None:intergenic 55.0%
CATCTAATCTCGCGAAGGCG+AGG + chr5_3:65361559-65361578 None:intergenic 55.0%
CTCGCCTTCGCGAGATTAGA+TGG - chr5_3:65361557-65361576 Msa0825500:intron 55.0%
AATGGGCCTGGACCAATACC+CGG - chr5_3:65361602-65361621 Msa0825500:intron 55.0%
ATTGCCCGTCGTGCAGGAAT+GGG + chr5_3:65361629-65361648 None:intergenic 55.0%
AATTGCCCGTCGTGCAGGAA+TGG + chr5_3:65361630-65361649 None:intergenic 55.0%
CCATTAATTGCCCGTCGTGC+AGG + chr5_3:65361635-65361654 None:intergenic 55.0%
CCTGCACGACGGGCAATTAA+TGG - chr5_3:65361632-65361651 Msa0825500:intron 55.0%
AACCCACCAACGACTAGAGC+CGG + chr5_3:65361693-65361712 None:intergenic 55.0%
GGTTTATATGCTGGCCACGC+GGG - chr5_3:65361713-65361732 Msa0825500:intron 55.0%
! CGGGCGGGGCTTTTCAAATA+TGG - chr5_3:65361732-65361751 Msa0825500:intron 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr5_3:65360567-65360586 None:intergenic 60.0%
AGAGGCTCACGAGACGCATC+TGG - chr5_3:65361222-65361241 Msa0825500:intron 60.0%
! TCTACTGGCATCGAACGGCC+AGG - chr5_3:65361288-65361307 Msa0825500:intron 60.0%
CGGCCAGGAACTTTACCACC+GGG - chr5_3:65361303-65361322 Msa0825500:intron 60.0%
! GGCAGCGGCAGATGAGGTTT+TGG + chr5_3:65361373-65361392 None:intergenic 60.0%
TGTCGGAGAGAGTGAGGCAG+CGG + chr5_3:65361388-65361407 None:intergenic 60.0%
! TGCTAACATGCGCACCGGTG+TGG + chr5_3:65361460-65361479 None:intergenic 60.0%
ATGGGCCTGGACCAATACCC+GGG - chr5_3:65361603-65361622 Msa0825500:intron 60.0%
!! TTGCCGGCTCTAGTCGTTGG+TGG - chr5_3:65361687-65361706 Msa0825500:intron 60.0%
!! TGCCGGCTCTAGTCGTTGGT+GGG - chr5_3:65361688-65361707 Msa0825500:intron 60.0%
! GGCTCTAGTCGTTGGTGGGT+TGG - chr5_3:65361692-65361711 Msa0825500:intron 60.0%
TTATATGCTGGCCACGCGGG+CGG - chr5_3:65361716-65361735 Msa0825500:intron 60.0%
GTGATACACAATCGCGCCGC+AGG + chr5_3:65362190-65362209 None:intergenic 60.0%
GAGTGAGGCAGCGGCAGATG+AGG + chr5_3:65361379-65361398 None:intergenic 65.0%
!! GGTGGGTGTCGGAGAGAGTG+AGG + chr5_3:65361394-65361413 None:intergenic 65.0%
!! ATGGGCCCGGGTATTGGTCC+AGG + chr5_3:65361611-65361630 None:intergenic 65.0%
GCAGGAATGGGCCCGGGTAT+TGG + chr5_3:65361617-65361636 None:intergenic 65.0%
TATATGCTGGCCACGCGGGC+GGG - chr5_3:65361717-65361736 Msa0825500:intron 65.0%
TTTGAAAAGCCCCGCCCGCG+TGG + chr5_3:65361730-65361749 None:intergenic 65.0%
! GTGACTCGGACTCGACCGAC+CGG + chr5_3:65361851-65361870 None:intergenic 65.0%
TCCGACACCCACCTCGCCTG+CGG - chr5_3:65361401-65361420 Msa0825500:intron 70.0%
GACGAAGCCGCAGGCGAGGT+GGG + chr5_3:65361411-65361430 None:intergenic 70.0%
CTCGCCTGCGGCTTCGTCGA+CGG - chr5_3:65361413-65361432 Msa0825500:intron 70.0%
ACTGCCGTCGACGAAGCCGC+AGG + chr5_3:65361420-65361439 None:intergenic 70.0%
CGTCGTGCAGGAATGGGCCC+GGG + chr5_3:65361623-65361642 None:intergenic 70.0%
CCGTCGTGCAGGAATGGGCC+CGG + chr5_3:65361624-65361643 None:intergenic 70.0%
CCGGGCCCATTCCTGCACGA+CGG - chr5_3:65361621-65361640 Msa0825500:intron 70.0%
CGGGCCCATTCCTGCACGAC+GGG - chr5_3:65361622-65361641 Msa0825500:intron 70.0%
ATATGCTGGCCACGCGGGCG+GGG - chr5_3:65361718-65361737 Msa0825500:intron 70.0%
GCCGCAGGCGAGGTGGGTGT+CGG + chr5_3:65361405-65361424 None:intergenic 75.0%
CGACGAAGCCGCAGGCGAGG+TGG + chr5_3:65361412-65361431 None:intergenic 75.0%
CGTCGACGAAGCCGCAGGCG+AGG + chr5_3:65361415-65361434 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 65357283 65362333 65357283 ID=Msa0825500;Name=Msa0825500
chr5_3 mRNA 65357283 65362333 65357283 ID=Msa0825500-mRNA-1;Parent=Msa0825500;Name=Msa0825500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|478
chr5_3 exon 65362055 65362333 65362055 ID=Msa0825500-mRNA-1:exon:20484;Parent=Msa0825500-mRNA-1
chr5_3 exon 65357283 65358440 65357283 ID=Msa0825500-mRNA-1:exon:20483;Parent=Msa0825500-mRNA-1
chr5_3 CDS 65362055 65362333 65362055 ID=Msa0825500-mRNA-1:cds;Parent=Msa0825500-mRNA-1
chr5_3 CDS 65357283 65358440 65357283 ID=Msa0825500-mRNA-1:cds;Parent=Msa0825500-mRNA-1
Gene Sequence

>Msa0825500

ATGTCTTCTTCTTCTTCCTCTTCTTCTTCATCACAACCATCTTCACCTTCAATTACTCCTTATGATGTTGCTTCTTCCTCAAATGTTGCTGCTGACATTCCTGGCCCTAGCACTTCTCATCAACCTGAACCTCCTTCATCTTCTTCCTCTCGCCAACGTGCTATGAATGAAGTATGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATGCTTCTCATTATCATGGTCGTCTTGCTGCTGCTTCTGCTCTTGCCATTATTTTTCAGGTTTGTTCAACATGGAGAGAAGTGTCACGTTCGGATCTACTGTGGCAGAGGCTCACGAGACGCATCTGGCGCAGAACATATAGATTGAGGGACACGTGGCAGTTAGAATACATCTACTGGCATCGAACGGCCAGGAACTTTACCACCGGGAGACATGCTTTAGTGGTCCCACAATATGATCCAGGAGATCACCACCAAAACCTCATCTGCCGCTGCCTCACTCTCTCCGACACCCACCTCGCCTGCGGCTTCGTCGACGGCAGTGTCCGACTCTTCGATCTCCACACCGGTGCGCATGTTAGCACATTTTGGTCCAACCATGGTCTTCTATTCGGCCCGTTTTCACAATCCGTTTCGGGAATTGTAATTGGAAGCTCTACCCTCGCCTTCGCGAGATTAGATGGAGATGTCTACATTGCTATTATTAATGGGCCTGGACCAATACCCGGGCCCATTCCTGCACGACGGGCAATTAATGGTGATGTTGTCAATAGCGGAGTATTAGTAGAATTTGCCGGCTCTAGTCGTTGGTGGGTTGGTTTATATGCTGGCCACGCGGGCGGGGCTTTTCAAATATGGGACGCGCACACGGAACAGCGCGTGTTTGTTGGCGGTTCATTAACCGATCCTGAAACGGTTCAAGGATGGCATATGTTAACCGAATTAGTTGAACCGGTCGGTCGAGTCCGAGTCACCGAAAGAGAATTTGTAGTAGCTTGCACAAGTGCAAGATTGGTTTGTTTCAACTTAAGAAACCCAGAGATTCTATTACGTGATGTAGTGTCCATAACAGGATTCATTGTAGGATCATTGGATGTTAGCCATGAGGTTTTTGTTGTGGTGGAAAGAAGTGGTGTTGGAACTGTTCGGCGCGTGAATAATTTTGAGCGCGTGAGTAGGTTTAGATTAAGGGCTTCATGGTTAAGAGGTTTATTAGGGTGCATGAATTTAGGGTATGTTATAACATATTCTGGTGGGTCTGGTTTGTTGAGAGTGTGGGACATACATGAACCTGCGGCGCGATTGTGTATCACGCTCCCTGTAAGAGATGATGGAGAAGGACAAGTTCATGGTAATAGCATGGTTGCTAATCAAACTCACGTGGCTATCTCATTTAATGACTCTTCTATACATTTATTGGATTTTAGTGTACAGTAA
Protein sequence

>Msa0825500

MSSSSSSSSSSQPSSPSITPYDVASSSNVAADIPGPSTSHQPEPPSSSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLAAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQNLICRCLTLSDTHLACGFVDGSVRLFDLHTGAHVSTFWSNHGLLFGPFSQSVSGIVIGSSTLAFARLDGDVYIAIINGPGPIPGPIPARRAINGDVVNSGVLVEFAGSSRWWVGLYAGHAGGAFQIWDAHTEQRVFVGGSLTDPETVQGWHMLTELVEPVGRVRVTEREFVVACTSARLVCFNLRNPEILLRDVVSITGFIVGSLDVSHEVFVVVERSGVGTVRRVNNFERVSRFRLRASWLRGLLGCMNLGYVITYSGGSGLLRVWDIHEPAARLCITLPVRDDGEGQVHGNSMVANQTHVAISFNDSSIHLLDFSVQ*