AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0825770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825770 MtrunA17_Chr5g0447701 93.112 392 21 2 1 387 1 391 0.0 731
Msa0825770 MtrunA17_Chr5g0447711 54.259 317 128 4 1 317 1 300 2.24e-109 323
Msa0825770 MtrunA17_Chr7g0243891 45.652 230 121 4 85 310 208 437 2.05e-54 188
Msa0825770 MtrunA17_Chr3g0101131 42.915 247 116 5 84 309 235 477 3.43e-54 188
Msa0825770 MtrunA17_Chr3g0106491 41.288 264 128 5 80 323 185 441 1.36e-53 185
Msa0825770 MtrunA17_Chr5g0445311 42.105 247 128 4 91 325 199 442 7.76e-52 181
Msa0825770 MtrunA17_Chr5g0432161 43.750 240 113 5 93 310 245 484 5.83e-51 179
Msa0825770 MtrunA17_Chr7g0249311 37.179 312 134 7 89 338 176 487 7.49e-50 178
Msa0825770 MtrunA17_Chr4g0004911 40.927 259 131 6 86 329 176 427 3.64e-49 173
Msa0825770 MtrunA17_Chr5g0418191 38.889 288 137 7 52 309 104 382 8.13e-49 171
Msa0825770 MtrunA17_Chr5g0418191 48.485 66 33 1 90 154 318 383 1.40e-11 65.9
Msa0825770 MtrunA17_Chr7g0263531 38.956 249 128 5 75 306 179 420 2.71e-45 161
Msa0825770 MtrunA17_Chr7g0263531 35.714 126 69 3 248 370 190 306 1.35e-15 78.2
Msa0825770 MtrunA17_Chr7g0263531 40.659 91 48 2 70 154 334 424 4.70e-12 67.0
Msa0825770 MtrunA17_Chr4g0042831 39.910 223 110 4 88 309 141 340 1.84e-44 158
Msa0825770 MtrunA17_Chr7g0218081 36.678 289 127 7 84 327 220 497 3.87e-44 160
Msa0825770 MtrunA17_Chr4g0074001 34.646 254 116 6 93 312 187 424 2.37e-35 135
Msa0825770 MtrunA17_Chr4g0009881 55.238 105 46 1 76 180 1 104 3.27e-31 115
Msa0825770 MtrunA17_Chr3g0079691 57.000 100 42 1 210 309 459 557 4.05e-29 119
Msa0825770 MtrunA17_Chr3g0079691 50.000 88 37 1 91 171 279 366 4.81e-20 92.0
Msa0825770 MtrunA17_Chr3g0079691 46.465 99 40 4 215 306 246 338 2.36e-14 74.7
Msa0825770 MtrunA17_Chr3g0079691 50.000 64 31 1 90 152 493 556 6.57e-12 67.0
Msa0825770 MtrunA17_Chr7g0249301 50.526 95 47 0 234 328 279 373 7.30e-28 113
Msa0825770 MtrunA17_Chr7g0249301 55.263 76 31 1 89 161 59 134 1.13e-19 89.7
Msa0825770 MtrunA17_Chr7g0249301 37.143 105 64 2 202 306 18 120 7.91e-13 69.3
Msa0825770 MtrunA17_Chr7g0249301 51.562 64 30 1 90 152 290 353 2.70e-12 67.8
Msa0825770 MtrunA17_Chr1g0150801 62.857 70 26 0 234 303 89 158 2.80e-25 100
Msa0825770 MtrunA17_Chr3g0099641 41.379 116 65 3 202 315 207 321 2.99e-23 100
Msa0825770 MtrunA17_Chr3g0099641 47.619 63 31 2 90 150 249 311 5.64e-11 63.9
Msa0825770 MtrunA17_Chr2g0322391 52.439 82 38 1 226 306 328 409 1.12e-22 100
Msa0825770 MtrunA17_Chr7g0270831 48.837 86 42 2 232 315 201 286 1.21e-22 99.0
Msa0825770 MtrunA17_Chr7g0270831 38.532 109 56 5 55 155 176 281 3.12e-12 67.8
Msa0825770 MtrunA17_Chr4g0075201 49.474 95 41 3 221 308 236 330 1.70e-22 99.0
Msa0825770 MtrunA17_Chr1g0188941 49.367 79 40 0 229 307 33 111 4.91e-22 90.5
Msa0825770 MtrunA17_Chr7g0270191 57.333 75 32 0 232 306 130 204 7.12e-22 94.7
Msa0825770 MtrunA17_Chr7g0270191 50.000 60 29 1 92 150 145 204 5.48e-11 63.2
Msa0825770 MtrunA17_Chr4g0051181 52.500 80 37 1 230 308 226 305 7.24e-22 97.1
Msa0825770 MtrunA17_Chr4g0051881 55.056 89 36 2 234 321 165 250 8.06e-22 95.5
Msa0825770 MtrunA17_Chr4g0051881 51.515 66 23 2 92 152 178 239 2.67e-12 67.4
Msa0825770 MtrunA17_Chr2g0288871 43.000 100 55 2 209 306 267 366 8.07e-22 97.1
Msa0825770 MtrunA17_Chr2g0288871 47.619 63 31 2 90 150 303 365 5.24e-11 64.3
Msa0825770 MtrunA17_Chr8g0383251 48.387 93 46 1 216 306 75 167 9.84e-22 91.7
Msa0825770 MtrunA17_Chr5g0443131 57.692 78 32 1 234 310 144 221 2.15e-21 93.6
Msa0825770 MtrunA17_Chr8g0335811 52.703 74 35 0 232 305 139 212 4.80e-21 90.9
Msa0825770 MtrunA17_Chr8g0335811 49.254 67 32 2 90 154 152 218 2.55e-11 63.2
Msa0825770 MtrunA17_Chr4g0025061 48.315 89 40 2 226 308 334 422 4.87e-21 95.1
Msa0825770 MtrunA17_Chr2g0294231 55.263 76 34 0 232 307 188 263 8.17e-21 93.2
Msa0825770 MtrunA17_Chr2g0294231 52.542 59 27 1 93 150 204 262 5.37e-12 66.6
Msa0825770 MtrunA17_Chr5g0418781 53.409 88 37 1 234 317 111 198 1.27e-20 90.9
Msa0825770 MtrunA17_Chr5g0418781 54.386 57 25 1 92 147 124 180 1.56e-11 64.3
Msa0825770 MtrunA17_Chr3g0129361 51.351 74 36 0 232 305 129 202 1.40e-20 89.4
Msa0825770 MtrunA17_Chr1g0150271 43.564 101 43 4 234 320 86 186 2.89e-20 89.4
Msa0825770 MtrunA17_Chr1g0194481 55.263 76 34 0 232 307 143 218 4.55e-20 90.1
Msa0825770 MtrunA17_Chr1g0194481 40.659 91 49 2 92 177 158 248 1.49e-12 68.2
Msa0825770 MtrunA17_Chr8g0386241 39.175 97 57 1 207 303 65 159 5.15e-20 86.7
Msa0825770 MtrunA17_Chr8g0386241 45.946 74 37 2 90 162 101 172 5.82e-13 67.0
Msa0825770 MtrunA17_Chr3g0136961 52.703 74 32 3 233 303 122 195 6.03e-20 89.4
Msa0825770 MtrunA17_Chr7g0224801 55.224 67 30 0 237 303 83 149 6.07e-20 86.3
Msa0825770 MtrunA17_Chr7g0224801 48.333 60 30 1 90 148 91 150 2.43e-12 64.7
Msa0825770 MtrunA17_Chr4g0068541 49.333 75 38 0 233 307 194 268 2.32e-19 89.4
Msa0825770 MtrunA17_Chr4g0025051 42.000 100 56 2 218 315 306 405 2.38e-19 89.7
Msa0825770 MtrunA17_Chr4g0060271 50.000 76 37 1 232 306 240 315 2.56e-19 89.7
Msa0825770 MtrunA17_Chr1g0150281 53.425 73 31 2 234 303 125 197 2.63e-19 87.4
Msa0825770 MtrunA17_Chr3g0129321 52.055 73 35 0 234 306 105 177 2.70e-19 85.5
Msa0825770 MtrunA17_Chr3g0129321 42.667 75 42 1 89 162 115 189 1.85e-11 63.2
Msa0825770 MtrunA17_Chr6g0485431 37.008 127 79 1 182 307 89 215 4.27e-19 87.8
Msa0825770 MtrunA17_Chr2g0302391 40.708 113 61 3 218 328 182 290 4.89e-19 88.2
Msa0825770 MtrunA17_Chr7g0216891 52.113 71 33 1 234 303 206 276 8.04e-19 88.2
Msa0825770 MtrunA17_Chr7g0238921 57.377 61 26 0 244 304 121 181 1.03e-18 86.3
Msa0825770 MtrunA17_Chr8g0383351 50.667 75 36 1 232 305 144 218 1.20e-18 84.3
Msa0825770 MtrunA17_Chr4g0001361 36.478 159 82 6 233 379 146 297 3.21e-18 84.7
Msa0825770 MtrunA17_Chr4g0001361 44.444 63 33 2 90 150 160 222 3.81e-11 63.5
Msa0825770 MtrunA17_Chr1g0189391 40.000 95 56 1 212 305 62 156 3.89e-18 84.7
Msa0825770 MtrunA17_Chr2g0333851 50.000 78 36 2 233 307 153 230 2.33e-17 82.0
Msa0825770 MtrunA17_Chr7g0248721 52.857 70 32 1 234 303 128 196 3.11e-17 80.1
Msa0825770 MtrunA17_Chr7g0248721 50.000 60 28 2 90 148 139 197 4.49e-11 62.4
Msa0825770 MtrunA17_Chr4g0053281 54.386 57 25 1 248 303 267 323 2.34e-16 79.3
Msa0825770 MtrunA17_Chr1g0147881 49.296 71 35 1 234 303 249 319 3.80e-16 79.0
Msa0825770 MtrunA17_Chr5g0401821 47.887 71 36 1 234 303 186 256 5.83e-16 77.4
Msa0825770 MtrunA17_Chr7g0270051 39.130 115 57 4 195 308 13 115 2.21e-15 75.5
Msa0825770 MtrunA17_Chr1g0184691 55.172 58 25 1 248 304 294 351 2.74e-15 76.6
Msa0825770 MtrunA17_Chr4g0071521 46.479 71 37 1 234 303 232 302 4.89e-15 75.5
Msa0825770 MtrunA17_Chr2g0319961 42.857 91 45 2 226 315 65 149 1.10e-14 73.6
Msa0825770 MtrunA17_Chr8g0379461 50.000 64 31 1 247 309 76 139 1.49e-14 72.8
Msa0825770 MtrunA17_Chr8g0387501 47.222 72 37 1 239 309 121 192 1.65e-14 73.2
Msa0825770 MtrunA17_Chr5g0432071 31.579 152 83 2 1 152 34 164 2.30e-14 71.6
Msa0825770 MtrunA17_Chr5g0432071 39.785 93 48 4 217 307 77 163 6.44e-13 67.4
Msa0825770 MtrunA17_Chr4g0024391 44.595 74 40 1 226 298 208 281 4.86e-14 73.6
Msa0825770 MtrunA17_Chr2g0289181 45.205 73 39 1 236 307 3 75 5.59e-14 70.9
Msa0825770 MtrunA17_Chr2g0289181 51.471 68 31 2 88 153 10 77 1.42e-13 69.7
Msa0825770 MtrunA17_Chr1g0202461 43.038 79 43 2 232 309 247 324 6.64e-14 72.8
Msa0825770 MtrunA17_Chr5g0419241 53.448 58 22 1 221 273 46 103 7.79e-14 67.4
Msa0825770 MtrunA17_Chr8g0348311 48.485 66 33 1 245 309 153 218 1.49e-13 71.2
Msa0825770 MtrunA17_Chr2g0284321 50.820 61 28 2 248 306 36 96 2.76e-13 68.6
Msa0825770 MtrunA17_Chr7g0248691 33.094 139 70 4 245 360 152 290 4.28e-13 69.7
Msa0825770 MtrunA17_Chr7g0228941 49.123 57 28 1 248 303 53 109 9.80e-13 64.7
Msa0825770 MtrunA17_Chr2g0293481 49.206 63 31 1 248 309 268 330 1.71e-12 68.6
Msa0825770 MtrunA17_Chr3g0139021 43.836 73 40 1 232 303 299 371 4.01e-12 67.4
Msa0825770 MtrunA17_Chr8g0347251 44.615 65 33 1 240 301 129 193 4.56e-11 63.5
Msa0825770 MtrunA17_Chr3g0126391 45.902 61 30 1 244 301 130 190 4.66e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825770 AT2G04880.2 45.113 266 110 7 76 314 94 350 6.74e-66 216
Msa0825770 AT2G04880.1 44.128 281 115 7 76 314 94 374 8.37e-65 214
Msa0825770 AT4G26640.5 41.017 295 128 8 83 344 30 311 1.62e-53 182
Msa0825770 AT4G26640.5 50.725 69 33 1 238 306 26 93 4.58e-14 73.6
Msa0825770 AT4G26640.6 41.017 295 128 8 83 344 30 311 1.62e-53 182
Msa0825770 AT4G26640.6 50.725 69 33 1 238 306 26 93 4.58e-14 73.6
Msa0825770 AT4G26640.4 41.017 295 128 8 83 344 30 311 1.62e-53 182
Msa0825770 AT4G26640.4 50.725 69 33 1 238 306 26 93 4.58e-14 73.6
Msa0825770 AT4G26640.3 41.017 295 128 8 83 344 30 311 1.62e-53 182
Msa0825770 AT4G26640.3 50.725 69 33 1 238 306 26 93 4.58e-14 73.6
Msa0825770 AT4G26640.1 41.017 295 128 8 83 344 134 415 1.24e-52 182
Msa0825770 AT4G26640.7 41.017 295 128 8 83 344 166 447 2.08e-52 182
Msa0825770 AT4G26640.2 41.017 295 128 8 83 344 206 487 3.64e-52 182
Msa0825770 AT2G30250.1 42.979 235 123 6 83 308 157 389 9.26e-50 172
Msa0825770 AT2G38470.1 43.621 243 112 5 92 310 184 425 1.29e-49 175
Msa0825770 AT2G38470.1 51.562 64 30 1 90 152 360 423 4.46e-12 67.8
Msa0825770 AT5G07100.2 41.441 222 90 3 89 309 21 203 1.27e-47 161
Msa0825770 AT5G07100.4 41.441 222 90 3 89 309 21 203 1.27e-47 161
Msa0825770 AT5G07100.5 41.441 222 90 3 89 309 21 203 1.27e-47 161
Msa0825770 AT5G07100.3 41.441 222 90 3 89 309 21 203 1.27e-47 161
Msa0825770 AT5G07100.1 41.441 222 90 3 89 309 114 296 3.32e-47 163
Msa0825770 AT3G01080.1 40.639 219 114 3 88 306 163 365 4.68e-45 160
Msa0825770 AT3G01080.1 56.250 64 27 1 246 309 166 228 1.03e-14 75.9
Msa0825770 AT4G30935.1 36.513 304 167 10 33 312 95 396 5.98e-45 161
Msa0825770 AT3G01080.2 40.741 216 112 3 88 303 201 400 7.61e-45 161
Msa0825770 AT3G01080.2 56.250 64 27 1 246 309 204 266 1.33e-14 75.5
Msa0825770 AT3G01080.2 50.000 62 30 1 90 150 342 403 8.79e-11 63.9
Msa0825770 AT4G26440.1 34.783 322 156 6 35 309 120 434 8.95e-45 163
Msa0825770 AT2G37260.2 36.940 268 114 8 93 316 84 340 6.09e-40 145
Msa0825770 AT2G37260.3 36.940 268 114 8 93 316 86 342 6.16e-40 145
Msa0825770 AT2G37260.1 36.940 268 114 8 93 316 166 422 1.42e-39 146
Msa0825770 AT5G56270.1 55.000 100 45 0 210 309 450 549 8.10e-30 121
Msa0825770 AT5G56270.1 55.932 59 25 1 248 306 274 331 5.09e-15 77.4
Msa0825770 AT5G56270.1 53.968 63 29 0 91 153 272 334 8.35e-15 76.6
Msa0825770 AT5G56270.1 50.000 64 31 1 90 152 485 548 2.65e-11 65.9
Msa0825770 AT1G13960.2 60.000 75 30 0 232 306 241 315 1.01e-26 109
Msa0825770 AT1G13960.1 61.111 72 28 0 232 303 394 465 1.83e-26 111
Msa0825770 AT2G03340.1 57.692 78 33 0 232 309 400 477 6.16e-26 109
Msa0825770 AT2G03340.1 56.250 64 28 0 88 151 246 309 2.75e-17 84.0
Msa0825770 AT2G03340.1 56.923 65 27 1 246 310 249 312 7.65e-17 82.4
Msa0825770 AT2G03340.1 48.485 66 33 1 90 154 413 478 5.88e-12 67.4
Msa0825770 AT4G12020.6 35.354 198 110 3 88 267 464 661 1.46e-23 103
Msa0825770 AT4G12020.6 34.483 116 70 3 246 356 467 581 1.21e-12 70.1
Msa0825770 AT4G12020.8 35.354 198 110 3 88 267 464 661 1.46e-23 103
Msa0825770 AT4G12020.8 34.483 116 70 3 246 356 467 581 1.21e-12 70.1
Msa0825770 AT4G12020.7 35.354 198 110 3 88 267 464 661 1.52e-23 103
Msa0825770 AT4G12020.7 34.483 116 70 3 246 356 467 581 1.17e-12 70.5
Msa0825770 AT4G12020.3 35.354 198 110 3 88 267 464 661 1.55e-23 103
Msa0825770 AT4G12020.3 34.483 116 70 3 246 356 467 581 1.37e-12 70.1
Msa0825770 AT4G12020.2 35.354 198 110 3 88 267 464 661 1.55e-23 103
Msa0825770 AT4G12020.2 34.483 116 70 3 246 356 467 581 1.35e-12 70.1
Msa0825770 AT4G12020.10 35.354 198 110 3 88 267 464 661 1.65e-23 103
Msa0825770 AT4G12020.10 50.820 61 29 1 246 306 467 526 1.32e-12 70.1
Msa0825770 AT4G12020.4 35.354 198 110 3 88 267 464 661 1.70e-23 103
Msa0825770 AT4G12020.4 34.483 116 70 3 246 356 467 581 1.36e-12 70.1
Msa0825770 AT4G12020.1 35.354 198 110 3 88 267 464 661 1.70e-23 103
Msa0825770 AT4G12020.1 34.483 116 70 3 246 356 467 581 1.22e-12 70.1
Msa0825770 AT4G12020.9 35.354 198 110 3 88 267 464 661 1.70e-23 103
Msa0825770 AT4G12020.9 34.483 116 70 3 246 356 467 581 1.22e-12 70.1
Msa0825770 AT4G12020.11 35.354 198 110 3 88 267 464 661 1.79e-23 103
Msa0825770 AT4G12020.11 34.483 116 70 3 246 356 467 581 1.22e-12 70.1
Msa0825770 AT4G12020.5 35.354 198 110 3 88 267 397 594 1.88e-23 103
Msa0825770 AT4G12020.5 34.483 116 70 3 246 356 400 514 1.43e-12 70.1
Msa0825770 AT5G26170.1 57.143 70 30 0 234 303 100 169 2.23e-23 96.3
Msa0825770 AT4G04450.2 42.735 117 63 4 225 337 176 292 6.30e-23 100
Msa0825770 AT4G04450.2 47.619 63 31 2 90 150 196 258 1.89e-11 65.9
Msa0825770 AT4G22070.4 49.425 87 42 2 222 306 272 358 9.76e-23 100
Msa0825770 AT4G22070.4 47.619 63 31 2 90 150 295 357 4.27e-11 64.7
Msa0825770 AT4G22070.3 49.425 87 42 2 222 306 272 358 9.76e-23 100
Msa0825770 AT4G22070.3 47.619 63 31 2 90 150 295 357 4.27e-11 64.7
Msa0825770 AT4G22070.2 49.425 87 42 2 222 306 272 358 9.76e-23 100
Msa0825770 AT4G22070.2 47.619 63 31 2 90 150 295 357 4.27e-11 64.7
Msa0825770 AT4G22070.1 49.425 87 42 2 222 306 272 358 9.76e-23 100
Msa0825770 AT4G22070.1 47.619 63 31 2 90 150 295 357 4.27e-11 64.7
Msa0825770 AT5G64810.1 57.143 70 30 0 234 303 97 166 1.50e-22 94.7
Msa0825770 AT4G04450.1 42.735 117 63 4 225 337 270 386 1.59e-22 99.8
Msa0825770 AT4G04450.1 47.619 63 31 2 90 150 290 352 3.52e-11 65.1
Msa0825770 AT2G47260.1 57.333 75 32 0 232 306 159 233 1.99e-22 97.4
Msa0825770 AT1G68150.1 52.500 80 37 1 230 308 218 297 2.82e-22 97.4
Msa0825770 AT1G62300.1 47.059 102 49 3 210 306 272 373 7.28e-22 97.8
Msa0825770 AT1G62300.1 47.619 63 31 2 90 150 310 372 5.02e-11 64.7
Msa0825770 AT1G29860.1 57.500 80 33 1 232 310 121 200 7.32e-22 94.7
Msa0825770 AT1G29860.1 50.000 60 29 1 92 150 136 195 9.47e-11 62.8
Msa0825770 AT1G55600.1 49.412 85 43 0 222 306 282 366 7.40e-22 97.4
Msa0825770 AT1G55600.1 43.421 76 34 2 76 150 299 366 7.62e-11 63.9
Msa0825770 AT2G44745.1 52.703 74 35 0 232 305 130 203 1.34e-21 92.4
Msa0825770 AT2G44745.1 46.479 71 37 1 90 159 143 213 9.67e-12 64.7
Msa0825770 AT4G18170.1 60.526 76 30 0 232 307 157 232 1.38e-21 94.7
Msa0825770 AT4G18170.1 51.667 60 28 1 92 150 172 231 3.70e-11 64.3
Msa0825770 AT4G01720.1 55.844 77 32 2 232 306 224 300 2.19e-21 95.9
Msa0825770 AT5G49520.1 56.250 80 34 1 232 310 206 285 2.80e-21 95.1
Msa0825770 AT5G49520.1 50.847 59 28 1 93 150 222 280 5.68e-11 63.9
Msa0825770 AT2G46130.1 55.714 70 31 0 234 303 17 86 5.11e-21 87.8
Msa0825770 AT2G46130.1 43.750 80 43 2 90 167 28 107 7.35e-14 67.8
Msa0825770 AT5G46350.1 57.895 76 32 0 234 309 170 245 7.11e-21 92.8
Msa0825770 AT5G13080.1 42.105 95 55 0 209 303 29 123 1.21e-20 87.8
Msa0825770 AT5G13080.1 48.438 64 32 1 90 152 65 128 1.18e-12 65.5
Msa0825770 AT4G39410.1 54.054 74 34 0 232 305 208 281 2.30e-20 90.9
Msa0825770 AT5G41570.1 37.671 146 75 3 158 303 25 154 3.30e-20 87.8
Msa0825770 AT5G41570.1 43.333 90 43 3 90 177 96 179 9.66e-14 69.3
Msa0825770 AT1G64000.1 51.429 70 34 0 234 303 101 170 4.87e-20 87.8
Msa0825770 AT1G64000.1 43.902 82 44 2 88 167 110 191 2.97e-14 71.2
Msa0825770 AT5G15130.1 52.000 75 35 1 233 306 213 287 7.54e-20 91.7
Msa0825770 AT5G15130.2 52.000 75 35 1 233 306 171 245 7.86e-20 91.7
Msa0825770 AT1G69310.4 57.143 70 30 0 234 303 134 203 3.49e-19 87.4
Msa0825770 AT1G69310.4 52.632 57 26 1 92 147 147 203 7.09e-11 63.2
Msa0825770 AT1G69310.2 57.143 70 30 0 234 303 134 203 3.49e-19 87.4
Msa0825770 AT1G69310.2 52.632 57 26 1 92 147 147 203 7.09e-11 63.2
Msa0825770 AT1G69310.1 57.143 70 30 0 234 303 134 203 3.49e-19 87.4
Msa0825770 AT1G69310.1 52.632 57 26 1 92 147 147 203 7.09e-11 63.2
Msa0825770 AT3G01970.1 50.704 71 35 0 233 303 51 121 5.32e-19 83.6
Msa0825770 AT3G62340.1 57.143 70 30 0 234 303 105 174 1.66e-18 85.1
Msa0825770 AT3G62340.1 52.542 59 27 1 93 150 119 177 1.74e-11 64.7
Msa0825770 AT4G31800.2 49.275 69 34 1 239 306 103 171 2.04e-18 84.3
Msa0825770 AT1G18860.1 50.000 76 37 1 232 306 224 299 2.23e-18 87.0
Msa0825770 AT4G31800.1 47.887 71 36 1 239 308 168 238 2.59e-18 85.1
Msa0825770 AT5G43290.1 32.836 134 80 1 243 376 110 233 1.15e-17 82.8
Msa0825770 AT2G25000.2 53.226 62 28 1 246 306 102 163 1.95e-17 81.3
Msa0825770 AT2G25000.4 53.226 62 28 1 246 306 102 163 1.95e-17 81.3
Msa0825770 AT2G25000.3 36.567 134 74 4 243 372 121 247 3.17e-17 80.9
Msa0825770 AT2G25000.1 36.567 134 74 4 243 372 142 268 3.48e-17 81.3
Msa0825770 AT2G21900.1 48.485 66 34 0 242 307 104 169 4.70e-17 79.3
Msa0825770 AT2G21900.1 40.000 80 47 1 72 150 89 168 7.74e-12 64.7
Msa0825770 AT2G23320.1 41.121 107 45 3 215 303 191 297 5.66e-17 81.6
Msa0825770 AT1G69810.2 50.649 77 36 2 232 306 130 206 5.95e-17 81.6
Msa0825770 AT1G69810.1 50.649 77 36 2 232 306 188 264 7.91e-17 81.6
Msa0825770 AT5G28650.1 57.895 57 23 1 248 303 263 319 2.07e-16 80.1
Msa0825770 AT3G01080.3 51.562 64 31 0 88 151 201 264 2.55e-16 79.7
Msa0825770 AT3G01080.3 56.250 64 27 1 246 309 204 266 5.39e-15 75.9
Msa0825770 AT1G80840.1 43.590 78 41 2 233 307 130 207 2.61e-16 79.3
Msa0825770 AT2G46130.2 51.429 70 30 1 234 303 17 82 2.93e-16 74.3
Msa0825770 AT5G52830.1 41.593 113 63 3 230 340 149 260 3.83e-16 79.3
Msa0825770 AT5G52830.1 45.588 68 35 2 85 150 158 225 1.05e-11 66.2
Msa0825770 AT2G24570.1 56.140 57 24 1 248 303 244 300 6.10e-16 78.6
Msa0825770 AT3G04670.1 57.895 57 23 1 248 303 263 319 6.60e-16 78.6
Msa0825770 AT4G24240.1 47.222 72 37 1 234 304 268 339 7.96e-16 78.6
Msa0825770 AT4G31550.2 54.386 57 25 1 248 303 246 302 4.60e-15 75.9
Msa0825770 AT4G31550.1 54.386 57 25 1 248 303 247 303 4.73e-15 75.9
Msa0825770 AT4G23550.1 45.333 75 40 1 236 309 129 203 9.54e-15 74.7
Msa0825770 AT2G30590.1 54.386 57 25 1 248 303 314 370 1.31e-14 75.1
Msa0825770 AT1G69310.3 52.857 70 29 1 234 303 134 199 1.83e-14 73.6
Msa0825770 AT1G29280.1 50.820 61 29 1 247 306 74 134 4.70e-14 72.0
Msa0825770 AT3G58710.2 40.566 106 56 2 203 307 32 131 2.98e-13 69.7
Msa0825770 AT3G58710.1 44.578 83 39 2 226 307 56 132 1.09e-12 68.2
Msa0825770 AT4G01250.1 48.438 64 32 1 247 309 128 191 1.50e-12 68.2
Msa0825770 AT2G34830.2 49.206 63 31 1 248 309 225 287 1.66e-12 68.9
Msa0825770 AT2G34830.1 49.206 63 31 1 248 309 216 278 1.71e-12 68.9
Msa0825770 AT5G01900.1 43.243 74 38 2 90 159 108 181 3.31e-12 66.6
Msa0825770 AT5G45260.1 34.211 114 58 3 41 150 1170 1270 1.02e-11 67.4
Msa0825770 AT1G30650.1 47.619 63 32 1 248 309 218 280 1.10e-11 66.6
Msa0825770 AT1G30650.1 50.769 65 30 2 88 150 213 277 4.18e-11 64.7
Msa0825770 AT2G46400.1 42.254 71 38 1 234 301 91 161 4.20e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACAATTATTTACTATAT+TGG 0.188794 5_3:+65823551 Msa0825770:three_prime_UTR
GGTGGTACGGTGTTCGATTC+AGG 0.214848 5_3:-65822365 None:intergenic
TTCCAACTATTTATAATCTT+TGG 0.238690 5_3:-65823403 None:intergenic
TTAAGGGGAGTGAATTTAAA+AGG 0.256917 5_3:+65822231 Msa0825770:CDS
TACGGTCAGAAAATGGTTAA+AGG 0.320262 5_3:+65822853 Msa0825770:CDS
GGTATCCGTGCTTCATAGTT+TGG 0.336564 5_3:+65821498 Msa0825770:five_prime_UTR
CTTATATATCAAAAGGAAAT+AGG 0.345765 5_3:-65821883 None:intergenic
AAAACATTGCAATTCAGCTT+TGG 0.349332 5_3:-65823361 None:intergenic
GGCTATAAATGGCGAAAGTA+TGG 0.352648 5_3:+65822197 Msa0825770:CDS
TACGGTGTTCGATTCAGGTT+TGG 0.354133 5_3:-65822360 None:intergenic
CACATCAGCAAAAGAGGATT+GGG 0.369608 5_3:-65822426 None:intergenic
TCACAAAAGATGGCTATAAA+TGG 0.370905 5_3:+65822186 Msa0825770:CDS
ACGGTGTTCGATTCAGGTTT+GGG 0.376118 5_3:-65822359 None:intergenic
GCGCAAATACGGTCAGAAAA+TGG 0.379435 5_3:+65822846 Msa0825770:CDS
AAACATTGCAATTCAGCTTT+GGG 0.379702 5_3:-65823360 None:intergenic
ATCGCTGATAGTATCTTCTT+TGG 0.380400 5_3:-65823249 None:intergenic
GCAACAGATGTTGTTGTACT+AGG 0.386843 5_3:-65823329 None:intergenic
TTGTGAGTTTGTGTTGTGTT+TGG 0.391062 5_3:-65820106 None:intergenic
TAGGTTATACTTATATATTA+TGG 0.392121 5_3:+65823432 Msa0825770:three_prime_UTR
CAATTCATGCGAAGGAGTCT+TGG 0.392943 5_3:-65822114 None:intergenic
TACCAAAGATTATAAATAGT+TGG 0.394205 5_3:+65823401 Msa0825770:three_prime_UTR
TGATGCTATGGCTTGTGAAT+TGG 0.396331 5_3:+65822049 Msa0825770:CDS
AATTCATGCGAAGGAGTCTT+GGG 0.399844 5_3:-65822113 None:intergenic
TGTTCTTCCTGTTGTTGAAA+AGG 0.414481 5_3:+65822397 Msa0825770:CDS
GTTCTTCCTGTTGTTGAAAA+GGG 0.420197 5_3:+65822398 Msa0825770:CDS
GGAAGGATGGTCGCTCGAAT+TGG 0.420254 5_3:-65823167 None:intergenic
AACTGTCATAACTACCTATG+AGG 0.422219 5_3:+65823079 Msa0825770:CDS
GGAAAAGAGAAGGTTAGAAT+AGG 0.424199 5_3:-65823477 None:intergenic
ACCTTCCACATCAGCAAAAG+AGG 0.424951 5_3:-65822432 None:intergenic
GGGGCTCTGTGAATGTTGCT+CGG 0.428148 5_3:-65822093 None:intergenic
CCACTTACTTATATATCAAA+AGG 0.436550 5_3:-65821890 None:intergenic
TACTATCGATGCTCGAGTCC+CGG 0.444280 5_3:+65823011 Msa0825770:CDS
CGTGAAAAGGTCACAAAAGA+TGG 0.457293 5_3:+65822176 Msa0825770:CDS
CCACATCAGCAAAAGAGGAT+TGG 0.467103 5_3:-65822427 None:intergenic
AGAGAAGGTTAGAATAGGAA+TGG 0.468695 5_3:-65823472 None:intergenic
GTTCGAACTACAAGTGAGTC+TGG 0.468907 5_3:+65822799 Msa0825770:CDS
TTTCAACCTCAATTTCTTCG+TGG 0.470012 5_3:+65820197 Msa0825770:five_prime_UTR
GAATTGCCTCCGATGCAATC+TGG 0.477882 5_3:+65822131 Msa0825770:CDS
GGGTATCGCTGGCGCAAATA+CGG 0.478104 5_3:+65822835 Msa0825770:CDS
GGGCTCTGTGAATGTTGCTC+GGG 0.482480 5_3:-65822092 None:intergenic
AACACGATCAACCGGTGGTA+CGG 0.488236 5_3:-65822378 None:intergenic
GAGAAGGTTAGAATAGGAAT+GGG 0.488308 5_3:-65823471 None:intergenic
ACCCTCCATAATACGTGAAA+AGG 0.489089 5_3:+65822163 Msa0825770:CDS
ACAGGAAGAACACGATCAAC+CGG 0.492427 5_3:-65822386 None:intergenic
CTCTGTGAATGTTGCTCGGG+CGG 0.495254 5_3:-65822089 None:intergenic
ATGATCATGTTGACCCTCAT+AGG 0.497230 5_3:-65823093 None:intergenic
AAGACCCTGGTTAGGAAGGA+TGG 0.500400 5_3:-65823180 None:intergenic
GAGTTTGTGTTGTGTTTGGA+TGG 0.506025 5_3:-65820102 None:intergenic
AATAGTAACAACGATGCGAC+TGG 0.513117 5_3:+65822742 Msa0825770:CDS
GCATTACCACGAAGAAATTG+AGG 0.514715 5_3:-65820203 None:intergenic
CATGTACCTCCCACTGGAAG+AGG 0.517977 5_3:+65823113 Msa0825770:CDS
GTATGAATCTGTGCCTCGAC+AGG 0.524519 5_3:+65822559 Msa0825770:CDS
TTTGCTGATGTGGAAGGTCA+AGG 0.525864 5_3:+65822437 Msa0825770:CDS
ATTTGCATATTTAGTCAACC+TGG 0.525934 5_3:-65823530 None:intergenic
AGCGACCATCCTTCCTAACC+AGG 0.527054 5_3:+65823175 Msa0825770:CDS
TGAATCGAACACCGTACCAC+CGG 0.534719 5_3:+65822367 Msa0825770:CDS
ATTGCAATTCAGCTTTGGGC+AGG 0.538267 5_3:-65823356 None:intergenic
TTGTAAATGATGGGTATCGC+TGG 0.545679 5_3:+65822824 Msa0825770:CDS
TACGAAGATTGCAGTTACAT+TGG 0.556013 5_3:+65822323 Msa0825770:CDS
CGCAAAGGTGTGACCTGTCG+AGG 0.560873 5_3:-65822572 None:intergenic
GAGTCTGGAATTGTAAATGA+TGG 0.567590 5_3:+65822814 Msa0825770:CDS
TCTAAAATATTGTGATTCAT+CGG 0.567663 5_3:+65823597 Msa0825770:three_prime_UTR
AATTGAGGTTGAAATTGAAG+AGG 0.569183 5_3:-65820188 None:intergenic
TCATGTTCACTTAATCTGCA+TGG 0.576789 5_3:-65823302 None:intergenic
AGGGAGATTGCATTGTCACA+AGG 0.576933 5_3:+65821990 Msa0825770:CDS
TAAATAGTTGGAAGTGACGT+AGG 0.577128 5_3:+65823413 Msa0825770:three_prime_UTR
TTCATGGACACCTCTTCCAG+TGG 0.585110 5_3:-65823123 None:intergenic
ATATAAGTAAGTGGTTAACA+TGG 0.590129 5_3:+65821899 Msa0825770:exon
TCATGGACACCTCTTCCAGT+GGG 0.592212 5_3:-65823122 None:intergenic
CTGTCTTGACCAGATTGCAT+CGG 0.594317 5_3:-65822140 None:intergenic
GCAGCGAGTGAGTCCTCAGA+GGG 0.598264 5_3:+65821971 Msa0825770:CDS
TATTTGTAAGCTATGAAGCA+TGG 0.599377 5_3:+65821399 Msa0825770:five_prime_UTR
TCTTAAAAGTGAAACAAATG+AGG 0.601629 5_3:+65823199 Msa0825770:CDS
ATCGGAGGCAATTCATGCGA+AGG 0.602766 5_3:-65822122 None:intergenic
ACTGGAGCTGATGTGTCAAA+TGG 0.603473 5_3:+65822760 Msa0825770:CDS
TCTTGACCAGATTGCATCGG+AGG 0.603924 5_3:-65822137 None:intergenic
CATGATCATGTACCTCCCAC+TGG 0.604796 5_3:+65823107 Msa0825770:CDS
ACTGTCATAACTACCTATGA+GGG 0.609013 5_3:+65823080 Msa0825770:CDS
AGTGTCGGATTCTGATGCTA+TGG 0.614930 5_3:+65822037 Msa0825770:CDS
GGGAGATTGCATTGTCACAA+GGG 0.616469 5_3:+65821991 Msa0825770:CDS
GAAGGTGGATGGAAACGCAA+AGG 0.633047 5_3:-65822587 None:intergenic
AGTCTGGAATTGTAAATGAT+GGG 0.636147 5_3:+65822815 Msa0825770:CDS
ACTTACCAAACTATGAAGCA+CGG 0.646784 5_3:-65821503 None:intergenic
CGCGAACTGACGAGTCAAAG+CGG 0.647499 5_3:+65822618 Msa0825770:CDS
AGCAGCGAGTGAGTCCTCAG+AGG 0.650168 5_3:+65821970 Msa0825770:CDS
TTAAAGGCAACACAAATCCA+AGG 0.658587 5_3:+65822869 Msa0825770:CDS
GACAATGCAATCTCCCTCTG+AGG 0.667746 5_3:-65821984 None:intergenic
TTCAACGTAAGCATATGTGT+CGG 0.675963 5_3:-65821452 None:intergenic
ACATCAGCAAAAGAGGATTG+GGG 0.677148 5_3:-65822425 None:intergenic
ATTCATGCGAAGGAGTCTTG+GGG 0.682503 5_3:-65822112 None:intergenic
TGGACACCTCTTCCAGTGGG+AGG 0.683929 5_3:-65823119 None:intergenic
CGATGAATACATAGAAACGA+AGG 0.685071 5_3:-65821842 None:intergenic
GCGACCATCCTTCCTAACCA+GGG 0.690672 5_3:+65823176 Msa0825770:CDS
TCAGCAAAAGAGGATTGGGG+CGG 0.712005 5_3:-65822422 None:intergenic
GGAAGAACACGATCAACCGG+TGG 0.725841 5_3:-65822383 None:intergenic
CAATTTCAGATATCACACGA+TGG 0.729225 5_3:+65822296 Msa0825770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTAATTATCATTT+TGG + chr5_3:65820595-65820614 Msa0825770:intron 10.0%
!!! TGATATTTTTTAATTTTCAA+AGG - chr5_3:65820759-65820778 None:intergenic 10.0%
!!! ATTGATATTTTTTAATTTCA+GGG + chr5_3:65821104-65821123 Msa0825770:intron 10.0%
!! AATTAATATCTTTAATAAAC+AGG + chr5_3:65821275-65821294 Msa0825770:intron 10.0%
!!! ATATTTTCTCAAATTATTAT+CGG + chr5_3:65821477-65821496 Msa0825770:five_prime_UTR 10.0%
!! ACAAATTCATAAACTAAATT+GGG - chr5_3:65820445-65820464 None:intergenic 15.0%
!! AACAAATTCATAAACTAAAT+TGG - chr5_3:65820446-65820465 None:intergenic 15.0%
!!! AATTTAGTTTATGAATTTGT+TGG + chr5_3:65820445-65820464 Msa0825770:intron 15.0%
!!! ATTTAGTTTATGAATTTGTT+GGG + chr5_3:65820446-65820465 Msa0825770:intron 15.0%
!!! TTGAATGTTTTTTATGATTT+TGG + chr5_3:65820529-65820548 Msa0825770:intron 15.0%
!!! TGAATGTTTTTTATGATTTT+GGG + chr5_3:65820530-65820549 Msa0825770:intron 15.0%
!!! TTGTAGTAAATTTTTGAAAA+GGG - chr5_3:65820795-65820814 None:intergenic 15.0%
!!! ATTGTAGTAAATTTTTGAAA+AGG - chr5_3:65820796-65820815 None:intergenic 15.0%
!!! CATTGATATTTTTTAATTTC+AGG + chr5_3:65821103-65821122 Msa0825770:intron 15.0%
!!! TTTTTATCTTTGAAATTGTA+AGG - chr5_3:65821174-65821193 None:intergenic 15.0%
!!! TTAATTTTTCTTTTCTGTTT+TGG + chr5_3:65821322-65821341 Msa0825770:intron 15.0%
!! TATGAAAAAGATAAATAAGA+GGG - chr5_3:65821356-65821375 None:intergenic 15.0%
!! ATATGAAAAAGATAAATAAG+AGG - chr5_3:65821357-65821376 None:intergenic 15.0%
!! TAAAAAATTCTTACACTAAA+TGG - chr5_3:65821616-65821635 None:intergenic 15.0%
!!! TCTTAATATATTTTACTGTA+TGG + chr5_3:65822511-65822530 Msa0825770:intron 15.0%
!! TAGGTTATACTTATATATTA+TGG + chr5_3:65823432-65823451 Msa0825770:three_prime_UTR 15.0%
!! ATCACAATTATTTACTATAT+TGG + chr5_3:65823551-65823570 Msa0825770:three_prime_UTR 15.0%
!!! TATAGTAAAGTTTGTCATTT+TGG + chr5_3:65820269-65820288 Msa0825770:intron 20.0%
!! TAATCAAGTGTAAAGAAAAA+GGG - chr5_3:65820397-65820416 None:intergenic 20.0%
!! TTAATCAAGTGTAAAGAAAA+AGG - chr5_3:65820398-65820417 None:intergenic 20.0%
!! CAAATTCATAAACTAAATTG+GGG - chr5_3:65820444-65820463 None:intergenic 20.0%
!! TACAATTTCAAGACTAAAAT+GGG + chr5_3:65820654-65820673 Msa0825770:intron 20.0%
!!! TGTAGTAAATTTTTGAAAAG+GGG - chr5_3:65820794-65820813 None:intergenic 20.0%
!! TATCTATTTACTCACTAAAA+TGG + chr5_3:65821198-65821217 Msa0825770:intron 20.0%
!! TTTAGTAACATAACATTGTT+GGG - chr5_3:65821251-65821270 None:intergenic 20.0%
!! CTTATATATCAAAAGGAAAT+AGG - chr5_3:65821886-65821905 None:intergenic 20.0%
!!! ATTAAGAGTTTTTTCATGTA+AGG - chr5_3:65822498-65822517 None:intergenic 20.0%
!! TTTACAATATGATATCAAAC+AGG + chr5_3:65822710-65822729 Msa0825770:intron 20.0%
!! ATAAAATAATGCATCTTGAA+AGG - chr5_3:65822911-65822930 None:intergenic 20.0%
!! TACCAAAGATTATAAATAGT+TGG + chr5_3:65823401-65823420 Msa0825770:three_prime_UTR 20.0%
!! TTCCAACTATTTATAATCTT+TGG - chr5_3:65823406-65823425 None:intergenic 20.0%
!!! TCTAAAATATTGTGATTCAT+CGG + chr5_3:65823597-65823616 Msa0825770:three_prime_UTR 20.0%
!!! TTTATGAATTTGTTGGGATT+AGG + chr5_3:65820452-65820471 Msa0825770:intron 25.0%
! ACACAATTGACTAAACTATA+AGG + chr5_3:65820553-65820572 Msa0825770:intron 25.0%
!!! CATTTTAGTCTTGAAATTGT+AGG - chr5_3:65820655-65820674 None:intergenic 25.0%
! CTACAATTTCAAGACTAAAA+TGG + chr5_3:65820653-65820672 Msa0825770:intron 25.0%
!!! ACAATTTTGAAGACTGTTTA+AGG + chr5_3:65820811-65820830 Msa0825770:intron 25.0%
!!! CAATTTTGAAGACTGTTTAA+GGG + chr5_3:65820812-65820831 Msa0825770:intron 25.0%
!!! TGTCTAAAGAAATGTTTTGA+TGG + chr5_3:65821068-65821087 Msa0825770:intron 25.0%
!!! TAAAGAAATGTTTTGATGGA+GGG + chr5_3:65821072-65821091 Msa0825770:intron 25.0%
!!! TTGCTATTTTGTAAAGTTGA+AGG + chr5_3:65821133-65821152 Msa0825770:intron 25.0%
! TGGTTCTCTTAATATAGAAT+TGG + chr5_3:65821221-65821240 Msa0825770:intron 25.0%
! CTTTAGTAACATAACATTGT+TGG - chr5_3:65821252-65821271 None:intergenic 25.0%
!! GTATTGATGATTTCTGATAA+TGG + chr5_3:65821761-65821780 Msa0825770:intron 25.0%
!!! TAAGCTTTTTAATTGTTGTC+AGG + chr5_3:65821808-65821827 Msa0825770:intron 25.0%
! CCACTTACTTATATATCAAA+AGG - chr5_3:65821893-65821912 None:intergenic 25.0%
!! CCTTTTGATATATAAGTAAG+TGG + chr5_3:65821890-65821909 Msa0825770:five_prime_UTR 25.0%
! ATATAAGTAAGTGGTTAACA+TGG + chr5_3:65821899-65821918 Msa0825770:exon 25.0%
!! ATTTTGTAGGTGTATTTTCA+TGG - chr5_3:65823142-65823161 None:intergenic 25.0%
! TCTTAAAAGTGAAACAAATG+AGG + chr5_3:65823199-65823218 Msa0825770:CDS 25.0%
! CTAAAAATGAGCTAGAAAAA+GGG - chr5_3:65823501-65823520 None:intergenic 25.0%
! ACTAAAAATGAGCTAGAAAA+AGG - chr5_3:65823502-65823521 None:intergenic 25.0%
AATTGAGGTTGAAATTGAAG+AGG - chr5_3:65820191-65820210 None:intergenic 30.0%
!!! GTAAAGTTTGTCATTTTGGT+TGG + chr5_3:65820273-65820292 Msa0825770:intron 30.0%
GAAATTGAGGTATGAATTGT+GGG + chr5_3:65820295-65820314 Msa0825770:intron 30.0%
GTGTAAAGAAAAAGGGAAAA+GGG - chr5_3:65820390-65820409 None:intergenic 30.0%
AGTGTAAAGAAAAAGGGAAA+AGG - chr5_3:65820391-65820410 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr5_3:65821027-65821046 Msa0825770:intron 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr5_3:65821028-65821047 Msa0825770:intron 30.0%
!! TAGACATGCATATTGACTTA+GGG - chr5_3:65821054-65821073 None:intergenic 30.0%
!! TTAGACATGCATATTGACTT+AGG - chr5_3:65821055-65821074 None:intergenic 30.0%
!!! CTAAAGAAATGTTTTGATGG+AGG + chr5_3:65821071-65821090 Msa0825770:intron 30.0%
CTATTTACTCACTAAAATGG+TGG + chr5_3:65821201-65821220 Msa0825770:intron 30.0%
! GGTTTAGTTGAAATTAGCTT+CGG + chr5_3:65821296-65821315 Msa0825770:intron 30.0%
TATTTGTAAGCTATGAAGCA+TGG + chr5_3:65821399-65821418 Msa0825770:five_prime_UTR 30.0%
TGTAGCTAAAAATGAAGTGT+CGG + chr5_3:65822022-65822041 Msa0825770:CDS 30.0%
TCACAAAAGATGGCTATAAA+TGG + chr5_3:65822186-65822205 Msa0825770:CDS 30.0%
TTAAGGGGAGTGAATTTAAA+AGG + chr5_3:65822231-65822250 Msa0825770:CDS 30.0%
!! TCTGAAATTGTTTTCTTGCA+GGG - chr5_3:65822286-65822305 None:intergenic 30.0%
!! ATCTGAAATTGTTTTCTTGC+AGG - chr5_3:65822287-65822306 None:intergenic 30.0%
!!! TGACCATTTTCTAGAATTGT+TGG + chr5_3:65822653-65822672 Msa0825770:intron 30.0%
! ACTCCAACAATTCTAGAAAA+TGG - chr5_3:65822659-65822678 None:intergenic 30.0%
! AGTCTGGAATTGTAAATGAT+GGG + chr5_3:65822815-65822834 Msa0825770:CDS 30.0%
! GATAGTAATTTCTGGAAGAT+TGG - chr5_3:65822998-65823017 None:intergenic 30.0%
AAACATTGCAATTCAGCTTT+GGG - chr5_3:65823363-65823382 None:intergenic 30.0%
AAAACATTGCAATTCAGCTT+TGG - chr5_3:65823364-65823383 None:intergenic 30.0%
ATTTGCATATTTAGTCAACC+TGG - chr5_3:65823533-65823552 None:intergenic 30.0%
TTGTGAGTTTGTGTTGTGTT+TGG - chr5_3:65820109-65820128 None:intergenic 35.0%
TTTCAACCTCAATTTCTTCG+TGG + chr5_3:65820197-65820216 Msa0825770:five_prime_UTR 35.0%
!!! GTCATTTTGGTTGGAAATTG+AGG + chr5_3:65820282-65820301 Msa0825770:intron 35.0%
GGAAATTGAGGTATGAATTG+TGG + chr5_3:65820294-65820313 Msa0825770:intron 35.0%
TTTGTTGGGATTAGGCAATT+TGG + chr5_3:65820460-65820479 Msa0825770:intron 35.0%
! ATTGTAAGGATCTGTCGATT+TGG - chr5_3:65821160-65821179 None:intergenic 35.0%
! AGCATGGACACTTTTCAATT+AGG + chr5_3:65821415-65821434 Msa0825770:five_prime_UTR 35.0%
! TGGACACTTTTCAATTAGGT+CGG + chr5_3:65821419-65821438 Msa0825770:five_prime_UTR 35.0%
TTCAACGTAAGCATATGTGT+CGG - chr5_3:65821455-65821474 None:intergenic 35.0%
ACTTACCAAACTATGAAGCA+CGG - chr5_3:65821506-65821525 None:intergenic 35.0%
TACATTAGTCATGCTGTCAT+GGG - chr5_3:65821570-65821589 None:intergenic 35.0%
TTACATTAGTCATGCTGTCA+TGG - chr5_3:65821571-65821590 None:intergenic 35.0%
TGTGACACGTATGAATTGAA+GGG - chr5_3:65821642-65821661 None:intergenic 35.0%
CGATGAATACATAGAAACGA+AGG - chr5_3:65821845-65821864 None:intergenic 35.0%
! ACCTTTTCACGTATTATGGA+GGG - chr5_3:65822167-65822186 None:intergenic 35.0%
! TGTGACCTTTTCACGTATTA+TGG - chr5_3:65822171-65822190 None:intergenic 35.0%
TATGGCCAGAAAAACGTTAA+GGG + chr5_3:65822215-65822234 Msa0825770:CDS 35.0%
CAATTTCAGATATCACACGA+TGG + chr5_3:65822296-65822315 Msa0825770:CDS 35.0%
TACGAAGATTGCAGTTACAT+TGG + chr5_3:65822323-65822342 Msa0825770:CDS 35.0%
TGTTCTTCCTGTTGTTGAAA+AGG + chr5_3:65822397-65822416 Msa0825770:CDS 35.0%
GTTCTTCCTGTTGTTGAAAA+GGG + chr5_3:65822398-65822417 Msa0825770:CDS 35.0%
! TCAGTTCGCGAAATTTTTGA+AGG - chr5_3:65822608-65822627 None:intergenic 35.0%
! GAGTCTGGAATTGTAAATGA+TGG + chr5_3:65822814-65822833 Msa0825770:CDS 35.0%
TACGGTCAGAAAATGGTTAA+AGG + chr5_3:65822853-65822872 Msa0825770:CDS 35.0%
TTAAAGGCAACACAAATCCA+AGG + chr5_3:65822869-65822888 Msa0825770:CDS 35.0%
!! TTCTCAACATGCTTTTTGAC+GGG - chr5_3:65823041-65823060 None:intergenic 35.0%
!! CTTCTCAACATGCTTTTTGA+CGG - chr5_3:65823042-65823061 None:intergenic 35.0%
AACTGTCATAACTACCTATG+AGG + chr5_3:65823079-65823098 Msa0825770:CDS 35.0%
ACTGTCATAACTACCTATGA+GGG + chr5_3:65823080-65823099 Msa0825770:CDS 35.0%
! CGAATTGGAGTCAATTTTGT+AGG - chr5_3:65823155-65823174 None:intergenic 35.0%
!!! TTGTTTCACTTTTAAGACCC+TGG - chr5_3:65823196-65823215 None:intergenic 35.0%
ATCGCTGATAGTATCTTCTT+TGG - chr5_3:65823252-65823271 None:intergenic 35.0%
TCATGTTCACTTAATCTGCA+TGG - chr5_3:65823305-65823324 None:intergenic 35.0%
TAAATAGTTGGAAGTGACGT+AGG + chr5_3:65823413-65823432 Msa0825770:three_prime_UTR 35.0%
GAGAAGGTTAGAATAGGAAT+GGG - chr5_3:65823474-65823493 None:intergenic 35.0%
AGAGAAGGTTAGAATAGGAA+TGG - chr5_3:65823475-65823494 None:intergenic 35.0%
GGAAAAGAGAAGGTTAGAAT+AGG - chr5_3:65823480-65823499 None:intergenic 35.0%
CTAGAAAAAGGGAAAAGAGA+AGG - chr5_3:65823490-65823509 None:intergenic 35.0%
!!! CATTTTTAGTTGTCTGTTCC+AGG + chr5_3:65823512-65823531 Msa0825770:three_prime_UTR 35.0%
!!! CATCGGTGATTTTTGTTTTG+TGG + chr5_3:65823614-65823633 Msa0825770:three_prime_UTR 35.0%
GAGTTTGTGTTGTGTTTGGA+TGG - chr5_3:65820105-65820124 None:intergenic 40.0%
GCATTACCACGAAGAAATTG+AGG - chr5_3:65820206-65820225 None:intergenic 40.0%
! AGACTGTTTAAGGGCTTGTT+TGG + chr5_3:65820821-65820840 Msa0825770:intron 40.0%
! GTTTAAGGGCTTGTTTGGAT+TGG + chr5_3:65820826-65820845 Msa0825770:intron 40.0%
CTGTGACACGTATGAATTGA+AGG - chr5_3:65821643-65821662 None:intergenic 40.0%
!! GGTTTTGTCACAAGAAAGTG+CGG + chr5_3:65821920-65821939 Msa0825770:CDS 40.0%
! TGATGCTATGGCTTGTGAAT+TGG + chr5_3:65822049-65822068 Msa0825770:CDS 40.0%
AATTCATGCGAAGGAGTCTT+GGG - chr5_3:65822116-65822135 None:intergenic 40.0%
ACCCTCCATAATACGTGAAA+AGG + chr5_3:65822163-65822182 Msa0825770:CDS 40.0%
! GACCTTTTCACGTATTATGG+AGG - chr5_3:65822168-65822187 None:intergenic 40.0%
CGTGAAAAGGTCACAAAAGA+TGG + chr5_3:65822176-65822195 Msa0825770:CDS 40.0%
GGCTATAAATGGCGAAAGTA+TGG + chr5_3:65822197-65822216 Msa0825770:CDS 40.0%
GTATGGCCAGAAAAACGTTA+AGG + chr5_3:65822214-65822233 Msa0825770:CDS 40.0%
ATGGCCAGAAAAACGTTAAG+GGG + chr5_3:65822216-65822235 Msa0825770:CDS 40.0%
ACATCAGCAAAAGAGGATTG+GGG - chr5_3:65822428-65822447 None:intergenic 40.0%
CACATCAGCAAAAGAGGATT+GGG - chr5_3:65822429-65822448 None:intergenic 40.0%
!! GCGAAATTTTTGAAGGTGGA+TGG - chr5_3:65822601-65822620 None:intergenic 40.0%
!! GTTCGCGAAATTTTTGAAGG+TGG - chr5_3:65822605-65822624 None:intergenic 40.0%
AATAGTAACAACGATGCGAC+TGG + chr5_3:65822742-65822761 Msa0825770:CDS 40.0%
!! TTGTAAATGATGGGTATCGC+TGG + chr5_3:65822824-65822843 Msa0825770:CDS 40.0%
!! CGAGCATCGATAGTAATTTC+TGG - chr5_3:65823006-65823025 None:intergenic 40.0%
!! TCTCAACATGCTTTTTGACG+GGG - chr5_3:65823040-65823059 None:intergenic 40.0%
!! GACAGTTGTTGTGTTTTGAG+AGG - chr5_3:65823066-65823085 None:intergenic 40.0%
ATGATCATGTTGACCCTCAT+AGG - chr5_3:65823096-65823115 None:intergenic 40.0%
!!! TTTTAAGACCCTGGTTAGGA+AGG - chr5_3:65823187-65823206 None:intergenic 40.0%
!!! TCACTTTTAAGACCCTGGTT+AGG - chr5_3:65823191-65823210 None:intergenic 40.0%
GCAACAGATGTTGTTGTACT+AGG - chr5_3:65823332-65823351 None:intergenic 40.0%
!!! GGTGATTTTTGTTTTGTGGC+TGG + chr5_3:65823618-65823637 Msa0825770:three_prime_UTR 40.0%
GGATTAGGCAATTTGGTCTG+TGG + chr5_3:65820467-65820486 Msa0825770:intron 45.0%
GGTATCCGTGCTTCATAGTT+TGG + chr5_3:65821498-65821517 Msa0825770:five_prime_UTR 45.0%
TCATGCTGTCATGGGCATAT+GGG - chr5_3:65821562-65821581 None:intergenic 45.0%
GATCACTCATCAATAGCAGC+AGG - chr5_3:65821679-65821698 None:intergenic 45.0%
AGGGAGATTGCATTGTCACA+AGG + chr5_3:65821990-65822009 Msa0825770:CDS 45.0%
GGGAGATTGCATTGTCACAA+GGG + chr5_3:65821991-65822010 Msa0825770:CDS 45.0%
! AGTGTCGGATTCTGATGCTA+TGG + chr5_3:65822037-65822056 Msa0825770:CDS 45.0%
ATTCATGCGAAGGAGTCTTG+GGG - chr5_3:65822115-65822134 None:intergenic 45.0%
CAATTCATGCGAAGGAGTCT+TGG - chr5_3:65822117-65822136 None:intergenic 45.0%
CTGTCTTGACCAGATTGCAT+CGG - chr5_3:65822143-65822162 None:intergenic 45.0%
! CACTCCCCTTAACGTTTTTC+TGG - chr5_3:65822223-65822242 None:intergenic 45.0%
! ACGGTGTTCGATTCAGGTTT+GGG - chr5_3:65822362-65822381 None:intergenic 45.0%
! TACGGTGTTCGATTCAGGTT+TGG - chr5_3:65822363-65822382 None:intergenic 45.0%
ACAGGAAGAACACGATCAAC+CGG - chr5_3:65822389-65822408 None:intergenic 45.0%
CCACATCAGCAAAAGAGGAT+TGG - chr5_3:65822430-65822449 None:intergenic 45.0%
! CCAATCCTCTTTTGCTGATG+TGG + chr5_3:65822427-65822446 Msa0825770:CDS 45.0%
! TCCTCTTTTGCTGATGTGGA+AGG + chr5_3:65822431-65822450 Msa0825770:CDS 45.0%
ACCTTCCACATCAGCAAAAG+AGG - chr5_3:65822435-65822454 None:intergenic 45.0%
TTTGCTGATGTGGAAGGTCA+AGG + chr5_3:65822437-65822456 Msa0825770:CDS 45.0%
ACTGGAGCTGATGTGTCAAA+TGG + chr5_3:65822760-65822779 Msa0825770:CDS 45.0%
GTTCGAACTACAAGTGAGTC+TGG + chr5_3:65822799-65822818 Msa0825770:CDS 45.0%
GCGCAAATACGGTCAGAAAA+TGG + chr5_3:65822846-65822865 Msa0825770:CDS 45.0%
AATCCAAGGTACACACATCG+TGG + chr5_3:65822883-65822902 Msa0825770:intron 45.0%
!! ATTGCAATTCAGCTTTGGGC+AGG - chr5_3:65823359-65823378 None:intergenic 45.0%
GTCATGCTGTCATGGGCATA+TGG - chr5_3:65821563-65821582 None:intergenic 50.0%
GACAATGCAATCTCCCTCTG+AGG - chr5_3:65821987-65822006 None:intergenic 50.0%
ATCGGAGGCAATTCATGCGA+AGG - chr5_3:65822125-65822144 None:intergenic 50.0%
GAATTGCCTCCGATGCAATC+TGG + chr5_3:65822131-65822150 Msa0825770:CDS 50.0%
TCTTGACCAGATTGCATCGG+AGG - chr5_3:65822140-65822159 None:intergenic 50.0%
TGAATCGAACACCGTACCAC+CGG + chr5_3:65822367-65822386 Msa0825770:CDS 50.0%
AACACGATCAACCGGTGGTA+CGG - chr5_3:65822381-65822400 None:intergenic 50.0%
TCAGCAAAAGAGGATTGGGG+CGG - chr5_3:65822425-65822444 None:intergenic 50.0%
GTATGAATCTGTGCCTCGAC+AGG + chr5_3:65822559-65822578 Msa0825770:CDS 50.0%
GAAGGTGGATGGAAACGCAA+AGG - chr5_3:65822590-65822609 None:intergenic 50.0%
GATCCACGATGTGTGTACCT+TGG - chr5_3:65822889-65822908 None:intergenic 50.0%
TACTATCGATGCTCGAGTCC+CGG + chr5_3:65823011-65823030 Msa0825770:CDS 50.0%
!! ATGCTTTTTGACGGGGCATC+CGG - chr5_3:65823033-65823052 None:intergenic 50.0%
CATGATCATGTACCTCCCAC+TGG + chr5_3:65823107-65823126 Msa0825770:CDS 50.0%
TCATGGACACCTCTTCCAGT+GGG - chr5_3:65823125-65823144 None:intergenic 50.0%
TTCATGGACACCTCTTCCAG+TGG - chr5_3:65823126-65823145 None:intergenic 50.0%
AAGACCCTGGTTAGGAAGGA+TGG - chr5_3:65823183-65823202 None:intergenic 50.0%
GACTTAGGGCCCGTTTCGAT+TGG - chr5_3:65821040-65821059 None:intergenic 55.0%
CTCTGTGAATGTTGCTCGGG+CGG - chr5_3:65822092-65822111 None:intergenic 55.0%
GGGCTCTGTGAATGTTGCTC+GGG - chr5_3:65822095-65822114 None:intergenic 55.0%
GGGGCTCTGTGAATGTTGCT+CGG - chr5_3:65822096-65822115 None:intergenic 55.0%
GGTGGTACGGTGTTCGATTC+AGG - chr5_3:65822368-65822387 None:intergenic 55.0%
GGAAGAACACGATCAACCGG+TGG - chr5_3:65822386-65822405 None:intergenic 55.0%
! GGCGGTCCCTTTTCAACAAC+AGG - chr5_3:65822407-65822426 None:intergenic 55.0%
CGCGAACTGACGAGTCAAAG+CGG + chr5_3:65822618-65822637 Msa0825770:CDS 55.0%
! GGGTATCGCTGGCGCAAATA+CGG + chr5_3:65822835-65822854 Msa0825770:CDS 55.0%
!! TGCTTTTTGACGGGGCATCC+GGG - chr5_3:65823032-65823051 None:intergenic 55.0%
CATGTACCTCCCACTGGAAG+AGG + chr5_3:65823113-65823132 Msa0825770:CDS 55.0%
GGAAGGATGGTCGCTCGAAT+TGG - chr5_3:65823170-65823189 None:intergenic 55.0%
AGCGACCATCCTTCCTAACC+AGG + chr5_3:65823175-65823194 Msa0825770:CDS 55.0%
GCGACCATCCTTCCTAACCA+GGG + chr5_3:65823176-65823195 Msa0825770:CDS 55.0%
AGCAGCGAGTGAGTCCTCAG+AGG + chr5_3:65821970-65821989 Msa0825770:CDS 60.0%
GCAGCGAGTGAGTCCTCAGA+GGG + chr5_3:65821971-65821990 Msa0825770:CDS 60.0%
! CGCAAAGGTGTGACCTGTCG+AGG - chr5_3:65822575-65822594 None:intergenic 60.0%
TGGACACCTCTTCCAGTGGG+AGG - chr5_3:65823122-65823141 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 65820070 65823659 65820070 ID=Msa0825770;Name=Msa0825770
chr5_3 mRNA 65820070 65823659 65820070 ID=Msa0825770-mRNA-1;Parent=Msa0825770;Name=Msa0825770-mRNA-1;_AED=0.25;_eAED=0.25;_QI=376|1|1|1|0.6|0.5|6|289|387
chr5_3 exon 65820070 65820218 65820070 ID=Msa0825770-mRNA-1:exon:20650;Parent=Msa0825770-mRNA-1
chr5_3 exon 65821381 65821519 65821381 ID=Msa0825770-mRNA-1:exon:20651;Parent=Msa0825770-mRNA-1
chr5_3 exon 65821830 65822458 65821830 ID=Msa0825770-mRNA-1:exon:20652;Parent=Msa0825770-mRNA-1
chr5_3 exon 65822543 65822642 65822543 ID=Msa0825770-mRNA-1:exon:20653;Parent=Msa0825770-mRNA-1
chr5_3 exon 65822732 65822890 65822732 ID=Msa0825770-mRNA-1:exon:20654;Parent=Msa0825770-mRNA-1
chr5_3 exon 65823007 65823659 65823007 ID=Msa0825770-mRNA-1:exon:20655;Parent=Msa0825770-mRNA-1
chr5_3 five_prime_UTR 65820070 65820218 65820070 ID=Msa0825770-mRNA-1:five_prime_utr;Parent=Msa0825770-mRNA-1
chr5_3 five_prime_UTR 65821381 65821519 65821381 ID=Msa0825770-mRNA-1:five_prime_utr;Parent=Msa0825770-mRNA-1
chr5_3 five_prime_UTR 65821830 65821917 65821830 ID=Msa0825770-mRNA-1:five_prime_utr;Parent=Msa0825770-mRNA-1
chr5_3 CDS 65821918 65822458 65821918 ID=Msa0825770-mRNA-1:cds;Parent=Msa0825770-mRNA-1
chr5_3 CDS 65822543 65822642 65822543 ID=Msa0825770-mRNA-1:cds;Parent=Msa0825770-mRNA-1
chr5_3 CDS 65822732 65822890 65822732 ID=Msa0825770-mRNA-1:cds;Parent=Msa0825770-mRNA-1
chr5_3 CDS 65823007 65823370 65823007 ID=Msa0825770-mRNA-1:cds;Parent=Msa0825770-mRNA-1
chr5_3 three_prime_UTR 65823371 65823659 65823371 ID=Msa0825770-mRNA-1:three_prime_utr;Parent=Msa0825770-mRNA-1
Gene Sequence

>Msa0825770

ATGGTTTTGTCACAAGAAAGTGCGGATCACAACGTTTCTTCTGATAAAGTACAGCAGCGAGTGAGTCCTCAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGAATTGGTGTCGTCACACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCGCATGAATTGCCTCCGATGCAATCTGGTCAAGACAGACCCTCCATAATACGTGAAAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGAAAACAATTTCAGATATCACACGATGGAAACTACGAAGATTGCAGTTACATTGGTCAGCATAATCATCCCAAACCTGAATCGAACACCGTACCACCGGTTGATCGTGTTCTTCCTGTTGTTGAAAAGGGACCGCCCCAATCCTCTTTTGCTGATGTGGAAGGTCAAGAAAATTCATCTGTTGAGTATGAATCTGTGCCTCGACAGGTCACACCTTTGCGTTTCCATCCACCTTCAAAAATTTCGCGAACTGACGAGTCAAAGCGGCTGAAGAAAGACAATAGTAACAACGATGCGACTGGAGCTGATGTGTCAAATGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTAAATGATGGGTATCGCTGGCGCAAATACGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGAAATTACTATCGATGCTCGAGTCCCGGATGCCCCGTCAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGTACCTCCCACTGGAAGAGGTGTCCATGAAAATACACCTACAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGGGTCTTAAAAGTGAAACAAATGAGGAAGAGCAACAAAATGAAGATGCTAGTACCAAAGAAGATACTATCAGCGATGCGATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGATACTCCTAGTACAACAACATCTGTTGCAGAACCTGCCCAAAGCTGA
Protein sequence

>Msa0825770

MVLSQESADHNVSSDKVQQRVSPQREIALSQGIDDVAKNEVSDSDAMACELVSSHSSPPEQHSQSPKTPSHELPPMQSGQDRPSIIREKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQISHDGNYEDCSYIGQHNHPKPESNTVPPVDRVLPVVEKGPPQSSFADVEGQENSSVEYESVPRQVTPLRFHPPSKISRTDESKRLKKDNSNNDATGADVSNGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHVPPTGRGVHENTPTKLTPIRATILPNQGLKSETNEEEQQNEDASTKEDTISDAMIRDSSLKVPCRLSEHDTPSTTTSVAEPAQS*