AlfalfaGEDB | Msa0825890

M. sativa cultivar zhongmu-4 / Msa0825890

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825890	AES62949.2	75.733	989	166	13	1	944	1	960	0.0	1418

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825890	sp\|Q9SSE9\|JMJ25_ARATH	53.333	495	214	4	419	909	415	896	7.38e-167	524
Msa0825890	sp\|Q9SSE9\|JMJ25_ARATH	34.437	302	181	4	120	405	32	332	2.66e-46	185

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825890	G7IE64	75.733	989	166	13	1	944	1	960	0.0	1418

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0825890	TR	Jumonji

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825890	MtrunA17_Chr1g0211661	76.794	892	135	12	1	847	1	865	0.0	1303
Msa0825890	MtrunA17_Chr1g0211711	68.346	774	209	7	164	907	284	1051	0.0	1087
Msa0825890	MtrunA17_Chr1g0183311	59.065	877	288	9	98	907	10	882	0.0	1001
Msa0825890	MtrunA17_Chr5g0426961	66.948	711	208	4	216	905	129	833	0.0	980
Msa0825890	MtrunA17_Chr1g0211691	52.898	949	289	21	1	795	1	945	0.0	868
Msa0825890	MtrunA17_Chr5g0448301	77.365	539	117	2	284	817	93	631	0.0	846
Msa0825890	MtrunA17_Chr5g0448301	73.936	188	46	1	60	244	1	188	4.95e-72	253
Msa0825890	MtrunA17_Chr5g0420361	60.310	645	205	8	291	888	139	779	0.0	775
Msa0825890	MtrunA17_Chr6g0472441	55.656	663	208	12	291	900	81	710	0.0	710
Msa0825890	MtrunA17_Chr2g0289121	45.299	702	324	11	226	904	155	819	0.0	578

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825890	AT1G11950.1	47.000	700	325	11	227	904	193	868	0.0	621
Msa0825890	AT1G11950.3	47.000	700	325	11	227	904	193	868	0.0	621
Msa0825890	AT1G62310.1	47.222	684	325	9	227	888	209	878	0.0	616
Msa0825890	AT1G11950.2	45.340	633	300	11	227	837	193	801	8.16e-173	530
Msa0825890	AT3G07610.1	53.333	495	214	4	419	909	415	896	7.50e-168	524
Msa0825890	AT3G07610.1	34.437	302	181	4	120	405	32	332	2.70e-47	185
Msa0825890	AT3G07610.3	51.167	514	218	5	419	909	415	918	9.85e-160	503
Msa0825890	AT3G07610.3	34.437	302	181	4	120	405	32	332	2.50e-47	185
Msa0825890	AT4G00990.3	44.639	513	259	10	226	723	79	581	4.82e-129	414
Msa0825890	AT4G00990.3	61.053	95	37	0	759	853	684	778	3.46e-31	132

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 238 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAATATAAAACCGG+CGG	0.642191	5_3:+65992373	Msa0825890:CDS
AAATACCTCAAACTTGTCCT+TGG	0.506309	5_3:-65995703	None:intergenic
AAATCTTCACGTGGAATTCG+AGG	0.510477	5_3:+65997228	Msa0825890:CDS
AAATGAAGAAGTGAAGAGTT+TGG	0.384795	5_3:+65998876	Msa0825890:CDS
AAATGGTCTGATCATGAATG+GGG	0.669524	5_3:-65994980	None:intergenic
AACACGCTCAAAAGCTGATC+CGG	0.481380	5_3:-65997311	None:intergenic
AACAGACTCTTCTGTTTCTG+CGG	0.571229	5_3:-65991223	None:intergenic
AACAGATTCTTCTGCTACTG+CGG	0.546201	5_3:-65991340	None:intergenic
AACCGGAGAGAAAGAAACGC+GGG	0.621363	5_3:+65991598	Msa0825890:CDS
AACTCGGAGATGCAATTCGG+AGG	0.675073	5_3:-65992781	None:intergenic

Showing 1 to 10 of 238 entries

Previous1 2 3 4 5…24Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAATAACGGTGAAAATT+CGG	+	chr5_3:65991296-65991315	Msa0825890:CDS	30.0%
GAAAAACAAGCTATGAATCT+TGG	+	chr5_3:65991372-65991391	Msa0825890:CDS	30.0%
GGATTCTTCTGAACTTAATT+TGG	-	chr5_3:65991691-65991710	None:intergenic	30.0%
TAAGATGCACAAAATGCAAA+CGG	+	chr5_3:65991754-65991773	Msa0825890:CDS	30.0%
ATTTCCTATAGTAAACCAGA+TGG	-	chr5_3:65992126-65992145	None:intergenic	30.0%
TTCTCTAAGTATATGCTGAA+AGG	+	chr5_3:65992186-65992205	Msa0825890:CDS	30.0%
TGAAGAACAAATGATTGAGA+AGG	+	chr5_3:65992236-65992255	Msa0825890:CDS	30.0%
AATATTCGGATGTGAATTAC+AGG	+	chr5_3:65992338-65992357	Msa0825890:intron	30.0%
ACCATGATGACATTCATTAT+CGG	-	chr5_3:65992737-65992756	None:intergenic	30.0%
AATTAAGCTTCAAGATGTAG+AGG	+	chr5_3:65992834-65992853	Msa0825890:CDS	30.0%

Showing 1 to 10 of 498 entries

Previous1 2 3 4 5…50Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	65991039	65999077	65991039	ID=Msa0825890;Name=Msa0825890
chr5_3	mRNA	65991039	65999077	65991039	ID=Msa0825890-mRNA-1;Parent=Msa0825890;Name=Msa0825890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.15\|0.07\|0.64\|1\|1\|14\|0\|1164
chr5_3	exon	65991039	65991808	65991039	ID=Msa0825890-mRNA-1:exon:20702;Parent=Msa0825890-mRNA-1
chr5_3	exon	65991956	65992055	65991956	ID=Msa0825890-mRNA-1:exon:20703;Parent=Msa0825890-mRNA-1
chr5_3	exon	65992141	65992279	65992141	ID=Msa0825890-mRNA-1:exon:20704;Parent=Msa0825890-mRNA-1
chr5_3	exon	65992360	65992423	65992360	ID=Msa0825890-mRNA-1:exon:20705;Parent=Msa0825890-mRNA-1
chr5_3	exon	65992507	65993185	65992507	ID=Msa0825890-mRNA-1:exon:20706;Parent=Msa0825890-mRNA-1
chr5_3	exon	65993684	65994013	65993684	ID=Msa0825890-mRNA-1:exon:20707;Parent=Msa0825890-mRNA-1
chr5_3	exon	65994414	65994713	65994414	ID=Msa0825890-mRNA-1:exon:20708;Parent=Msa0825890-mRNA-1
chr5_3	exon	65994972	65995044	65994972	ID=Msa0825890-mRNA-1:exon:20709;Parent=Msa0825890-mRNA-1
chr5_3	exon	65995133	65995218	65995133	ID=Msa0825890-mRNA-1:exon:20710;Parent=Msa0825890-mRNA-1
chr5_3	exon	65995600	65995719	65995600	ID=Msa0825890-mRNA-1:exon:20711;Parent=Msa0825890-mRNA-1
chr5_3	exon	65996168	65996226	65996168	ID=Msa0825890-mRNA-1:exon:20712;Parent=Msa0825890-mRNA-1
chr5_3	exon	65997186	65997333	65997186	ID=Msa0825890-mRNA-1:exon:20713;Parent=Msa0825890-mRNA-1
chr5_3	exon	65997826	65998081	65997826	ID=Msa0825890-mRNA-1:exon:20714;Parent=Msa0825890-mRNA-1
chr5_3	exon	65998707	65999077	65998707	ID=Msa0825890-mRNA-1:exon:20715;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65991039	65991808	65991039	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65991956	65992055	65991956	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65992141	65992279	65992141	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65992360	65992423	65992360	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65992507	65993185	65992507	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65993684	65994013	65993684	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65994414	65994713	65994414	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65994972	65995044	65994972	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65995133	65995218	65995133	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65995600	65995719	65995600	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65996168	65996226	65996168	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65997186	65997333	65997186	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65997826	65998081	65997826	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1
chr5_3	CDS	65998707	65999077	65998707	ID=Msa0825890-mRNA-1:cds;Parent=Msa0825890-mRNA-1

Gene Sequence

>Msa0825890

ATGGCGGAGGAAGAGAACAACGAAATTGTCACTTATAGAGTGAAAATCAAAGTCACACTCACTGTCCCAGACCCAGAAGAACCCATTCCTGACGATGAAACACTGCCTACTTTGAATGTTGGCGCCGCTGAAACTGCGTCATTGAATAACGGTGAAGGTTCGGTTGAAGCTGGTGATGTGGCAGCCGCAGAAACAGAAGAGTCTGTTCCTGATCGAGAAAAACAAGCTATGAATGGTGGCCCTGCTGAAACTGCGTCGTTGAATAACGGTGAAAATTCGGTTGAAGCTGGTGATGTGGCAGCCGCAGTAGCAGAAGAATCTGTTCCTGATCGAGAAAAACAAGCTATGAATCTTGGTGCCAATACGGTGGAGTCGCTGTTGACGGACGATGAAATGGCAGCTAGGGATTCTTCCTCGGTTAAAGCTGCTATGGAGATAATGAAACGCGGAAGAAAGAGTTTTGCAGAAATTCAGAAGAGGAAGATGGATGAAGAAGCGTTGTTAGTGAGCAGAATAAAGGAAGAAAGAGACGTGGTAGCCGGAGGCTCTTCATCATTTCAACCGGAGAGAAAGAAACGCGGGAGAAAGAGAAAAGCGGAGAAGGAATCCACCGAAAATGAGGTTCCACAAGTCCACAAGAAACTTAATACCAAATTAAGTTCAGAAGAATCCTTAGCGTGCCATCAATGTAAAAGAAGTGATAAGGGCAGGGTTATAAGATGCACAAAATGCAAACGGAGAAGATATTGCATACCCTGTTTGAACAAATGGTATCCTAAATTGAATGAGAGCGATGTTGCCGAAGCATGTCCTGTGTGCTGTGATAATTGCAATTGTAAAGCATGCTTGCGATCTTTTAAACTCATCAATGAAATGAAGTATAAGGTCGAAACCAACAATGATGAGGAAGTCGAGTTCTCTAAGTATATGCTGAAAGGACTTCTTCCACATTTAAGACGGTTGGATGAAGAACAAATGATTGAGAAGGAAAGAGAAGCCAAAATACAAGGCCTCTCACTCTCAAAGATAAATATAAAACCGGCGGATCATTCTAAAGATGAGCGTGTGATCTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACGAAATGCCGCTTTGACCTTTGTCTCCTCTGTTGTTGCGAGCTCCGTGATGGGAAGATTCTAGGTGGTGCAGATCCAATTGAGCTCGAGTATGTATCACACACTGAGGACGAGTCTACGACTCGTGAGTGGTCAAGATCTGGGTGGCATGCAAATGGCGATGGTAGCATTCCCTGTCCAAAAGCCGATAATGAATGTCATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCGAATTGCATCTCCGAGTTAGTATTTAAAGCAAACGAACTTGCAGAAACAATTAAGCTTCAAGATGTAGAGGAGACTTGTGATAATAGGTGTTCTTGCTTGAAACCTGTTAGTAACGCCGATGATATACACAATAACACAGGGAAGGCAGCTTTTCTTGAAAATTCAAGTGACAGATTTTTATACTGTCCTAGGGCAGTAGATCTACACCATGGAGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCAAAAGTCATGTGGCGTGCATTCCGTCAAAAAACCAATTCTAAATACGATGAAGTTTTGGATGTGAAGGCTGTTAATTGCATAGATTGGTGTGAGAGAGATATTAATATCCACCAATTCTTCACTGGTTACACAAGGGGTCGCAAGGATTGGCGCAATTGGCCTGAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACGTTTACCTCGTCATCATGCTGACTTCATAACTTCCTTGCCTTATAAAGAATATACAAATCCTTTTAGTGGTTCTCTCAACCTTGCTGTGAAGTTGCCGGATTATTGTTTAAAGCCTGACATGGGGCCAAAAACATATATTGCTTATGGATTTGCTCAGGATCTTGGACACGGGAATTCAGTCACTAAGCTCCATAGTAATGTGTTTGATGCAGTAAATGTGTTGACGCATATCGCTAAAGTGGAACTGAAACCTAAGGAAATTACTGCCATTAAGAAATTGAGACATAAGCACCTTGAGCAAGATAAGAGGGAGCTACATGGTTATGGGGAGGCGGTTGATATATTTCATCGACACTCTGACACTAATGATAGTGACCTGCTGGATGGAGGGGATCCCTTAGAAGGTGCTCTTTGGGATATTTTTCGGAAAGAAGATGTACCCAAATTGAAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCAATTGCAGTCCTTTAAAGCAGGTTATTGACCCCATTCATGATCAGACCATTTATTTGACTATGGAGCATAAGGTGAAACTCAGGGAGGAGTATGGAGTCGAACCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCCGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCCTGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGTGAGTGCTTTCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAGAACTGCCAAGGACAAGTTTGAGGTGAAGAAAATTGTCATACATGCTATGCTTGATGTGATTGAAAAATTAGAGAAAGAAAGGTTGCCATTAACTGTTTTTGAGGTCACTCTTGTGAAGGATAGAAATCTTCACGTGGAATTCGAGGTCATTCAACACAAATTACATTCAGCGATCAAAGAGCAGAGATCATTCGGTCTGTGTAAGTCCGGATCAGCTTTTGAGCGTGTTTTTGAAGCAATAACAACTGCTGCAAGTTGTTCCGGAATTATCAGCGACAGTTTATTTGCCATACTGTCCTGGAAATTTGCCAAACTCTCTTCCGTTGAAGGTGACGCAGCCGCATTATTAGAGGCGTTGAATCTTGCATCCAATAAAGGTTTTGACCGAGTTGTGTTTGAGAGTGATTCTCAAAGTTTAGTGAACGCAATTTTCTCGAATGCTCAAGGCATGAATTTTAGTGCTATTATTTATTGTATCGTTTCATCATTGTATTCTACTATAGTCAATACCTCTTCATTAACCACTTATGAAAACATTCAACATGTCCTCGGCAGTGAGAAGAGTTTCCGGTTCGAATTTTACATATCAGAATCAGAGATTACAGAATCAATTGATGGTGATAACCTTATGGAAAGTGAATCCCAAGCAGAAGAAAATGAAGAAGTGAAGAGTTTGGTGATAGTGGAACAAGAAAGTGTGATTATTGATGAAGATGAGACTGAGAAACTAAACAAAAAATGTGAGGATTTTATCAAAAAAATGAAAGCTGCTTTCTGTTCTGATTCAAGAGCTGAGAATAAGTTTTATTTTGATTATGATCAGAAATCAGAATCAGAAATCACTTGTGCTTGTTAA

Protein sequence

>Msa0825890

MAEEENNEIVTYRVKIKVTLTVPDPEEPIPDDETLPTLNVGAAETASLNNGEGSVEAGDVAAAETEESVPDREKQAMNGGPAETASLNNGENSVEAGDVAAAVAEESVPDREKQAMNLGANTVESLLTDDEMAARDSSSVKAAMEIMKRGRKSFAEIQKRKMDEEALLVSRIKEERDVVAGGSSSFQPERKKRGRKRKAEKESTENEVPQVHKKLNTKLSSEESLACHQCKRSDKGRVIRCTKCKRRRYCIPCLNKWYPKLNESDVAEACPVCCDNCNCKACLRSFKLINEMKYKVETNNDEEVEFSKYMLKGLLPHLRRLDEEQMIEKEREAKIQGLSLSKINIKPADHSKDERVICDNCKTSIFDYHRSCTKCRFDLCLLCCCELRDGKILGGADPIELEYVSHTEDESTTREWSRSGWHANGDGSIPCPKADNECHHGFLELRRILPPNCISELVFKANELAETIKLQDVEETCDNRCSCLKPVSNADDIHNNTGKAAFLENSSDRFLYCPRAVDLHHGDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPKVMWRAFRQKTNSKYDEVLDVKAVNCIDWCERDINIHQFFTGYTRGRKDWRNWPEVLKLKDWPPSDLFQERLPRHHADFITSLPYKEYTNPFSGSLNLAVKLPDYCLKPDMGPKTYIAYGFAQDLGHGNSVTKLHSNVFDAVNVLTHIAKVELKPKEITAIKKLRHKHLEQDKRELHGYGEAVDIFHRHSDTNDSDLLDGGDPLEGALWDIFRKEDVPKLKEYLKKHFREFRHVNCSPLKQVIDPIHDQTIYLTMEHKVKLREEYGVEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEEFRKLPINHRTAKDKFEVKKIVIHAMLDVIEKLEKERLPLTVFEVTLVKDRNLHVEFEVIQHKLHSAIKEQRSFGLCKSGSAFERVFEAITTAASCSGIISDSLFAILSWKFAKLSSVEGDAAALLEALNLASNKGFDRVVFESDSQSLVNAIFSNAQGMNFSAIIYCIVSSLYSTIVNTSSLTTYENIQHVLGSEKSFRFEFYISESEITESIDGDNLMESESQAEENEEVKSLVIVEQESVIIDEDETEKLNKKCEDFIKKMKAAFCSDSRAENKFYFDYDQKSESEITCAC*