Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825990 | XP_003618052.1 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 3.03e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825990 | G7K0M6 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 1.45e-174 | 491 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0825990 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825990 | MtrunA17_Chr5g0448221 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 2.79e-178 | 491 |
| Msa0825990 | MtrunA17_Chr2g0331601 | 30.374 | 214 | 94 | 8 | 18 | 207 | 105 | 287 | 1.12e-14 | 72.8 |
| Msa0825990 | MtrunA17_Chr1g0169561 | 32.039 | 206 | 84 | 9 | 44 | 202 | 14 | 210 | 1.46e-13 | 69.3 |
| Msa0825990 | MtrunA17_Chr1g0169521 | 31.282 | 195 | 85 | 7 | 49 | 202 | 24 | 210 | 3.18e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825990 | AT5G56200.1 | 44.048 | 84 | 41 | 1 | 60 | 137 | 77 | 160 | 1.07e-12 | 68.2 |
| Msa0825990 | AT2G26940.1 | 33.981 | 103 | 43 | 1 | 62 | 139 | 49 | 151 | 5.23e-12 | 65.1 |
Find 50 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTATTATCCTTATT+AGG | 0.131951 | 5_3:-66076035 | None:intergenic |
| ATACCCCTCCATTCCCTTTC+AGG | 0.172402 | 5_3:-66076008 | None:intergenic |
| GTGACCATGTAAAGCCTTAT+TGG | 0.177322 | 5_3:-66075973 | None:intergenic |
| ATCAAAAGATAATGTCTTAT+TGG | 0.200998 | 5_3:+66076400 | Msa0825990:CDS |
| ATCATCAATAACCAATTCTT+TGG | 0.220906 | 5_3:-66076105 | None:intergenic |
| CAATATTATTATCCTTATTA+GGG | 0.247792 | 5_3:-66076034 | None:intergenic |
| CATCAAACTTATTCTTCTTT+TGG | 0.256389 | 5_3:-66075544 | None:intergenic |
| AATAACCAATTCTTTGGAAT+TGG | 0.272420 | 5_3:-66076099 | None:intergenic |
| TCATCTTGATGATGATCCTT+TGG | 0.317224 | 5_3:-66075759 | None:intergenic |
| CGACAACTTCAATGAGGATT+TGG | 0.318999 | 5_3:+66076244 | Msa0825990:CDS |
| TTTAGGTGTGGAAAAGGATT+AGG | 0.327731 | 5_3:+66075831 | Msa0825990:CDS |
| TGCATCCAATTCCAAAGAAT+TGG | 0.334606 | 5_3:+66076094 | Msa0825990:CDS |
| CTTTCCCTAGAGCTTGACTA+TGG | 0.341322 | 5_3:-66075869 | None:intergenic |
| TTGATGATGAATCAAAATCT+TGG | 0.371768 | 5_3:+66076120 | Msa0825990:CDS |
| GAGGGGTATGAACCCTAATA+AGG | 0.375613 | 5_3:+66076022 | Msa0825990:CDS |
| TACCCCTCCATTCCCTTTCA+GGG | 0.375926 | 5_3:-66076007 | None:intergenic |
| AAAGAACTTCCAATCCAATA+AGG | 0.383910 | 5_3:+66075959 | Msa0825990:CDS |
| GTTGTCGTGTAAATGTTTAT+CGG | 0.409444 | 5_3:-66076228 | None:intergenic |
| TGATGATGAATCAAAATCTT+GGG | 0.427675 | 5_3:+66076121 | Msa0825990:CDS |
| CATGTAAAGCCTTATTGGAT+TGG | 0.438633 | 5_3:-66075968 | None:intergenic |
| TTTGGATGATGAGGATAAGA+AGG | 0.451348 | 5_3:+66076262 | Msa0825990:CDS |
| CAATCCAATAAGGCTTTACA+TGG | 0.457233 | 5_3:+66075969 | Msa0825990:CDS |
| GCTAATTGCAATTCTAATGA+TGG | 0.457837 | 5_3:+66075912 | Msa0825990:CDS |
| GCACGAAGATTGTTTAAAAC+CGG | 0.468350 | 5_3:+66076143 | Msa0825990:CDS |
| CCTAGTACTAGTGGTCTTGT+TGG | 0.468849 | 5_3:+66076296 | Msa0825990:CDS |
| CAAAAGAAGAATAAGTTTGA+TGG | 0.471977 | 5_3:+66075545 | Msa0825990:CDS |
| AGAATCCATAGTCAAGCTCT+AGG | 0.477759 | 5_3:+66075864 | Msa0825990:CDS |
| CATGAGATCTCACCCTGAAA+GGG | 0.502988 | 5_3:+66075995 | Msa0825990:CDS |
| CCAACAAGACCACTAGTACT+AGG | 0.509402 | 5_3:-66076296 | None:intergenic |
| TTGTTTAAAACCGGTAAAAG+AGG | 0.519380 | 5_3:+66076152 | Msa0825990:CDS |
| ACATGAGATCTCACCCTGAA+AGG | 0.521597 | 5_3:+66075994 | Msa0825990:CDS |
| AAGGATCATCATCAAGATGA+AGG | 0.523519 | 5_3:+66075762 | Msa0825990:CDS |
| TGATGGTGGTAGGATACATC+AGG | 0.528563 | 5_3:+66075562 | Msa0825990:CDS |
| TAGTCAAGCTCTAGGGAAAG+AGG | 0.530133 | 5_3:+66075872 | Msa0825990:CDS |
| AGAATGACAATAACAAAAGA+AGG | 0.532053 | 5_3:+66076342 | Msa0825990:CDS |
| AGGTGTGGAAAAGGATTAGG+TGG | 0.533754 | 5_3:+66075834 | Msa0825990:CDS |
| CAATGAGGATTTGGATGATG+AGG | 0.536568 | 5_3:+66076253 | Msa0825990:CDS |
| AGAATAAGTTTGATGGTGGT+AGG | 0.553715 | 5_3:+66075552 | Msa0825990:CDS |
| GATCTCACCCTGAAAGGGAA+TGG | 0.563550 | 5_3:+66076000 | Msa0825990:CDS |
| GAATCCATAGTCAAGCTCTA+GGG | 0.567403 | 5_3:+66075865 | Msa0825990:CDS |
| TCACCCTGAAAGGGAATGGA+GGG | 0.580204 | 5_3:+66076004 | Msa0825990:CDS |
| CTCACCCTGAAAGGGAATGG+AGG | 0.583418 | 5_3:+66076003 | Msa0825990:CDS |
| TAACAAAAGAAGGAAGAAGC+TGG | 0.586820 | 5_3:+66076352 | Msa0825990:CDS |
| GGTAAAAGAGGTCGTTCGAG+TGG | 0.603484 | 5_3:+66076164 | Msa0825990:CDS |
| AGTCAAGCTCTAGGGAAAGA+GGG | 0.609576 | 5_3:+66075873 | Msa0825990:CDS |
| TTTACACGACAACTTCAATG+AGG | 0.617038 | 5_3:+66076238 | Msa0825990:CDS |
| AAGAAGAATAAGTTTGATGG+TGG | 0.622051 | 5_3:+66075548 | Msa0825990:CDS |
| AATGTTGTACCTAGTACTAG+TGG | 0.625803 | 5_3:+66076287 | Msa0825990:CDS |
| CACCCTGAAAGGGAATGGAG+GGG | 0.655548 | 5_3:+66076005 | Msa0825990:CDS |
| AGAGGGTGAGTCGAAAGCAA+AGG | 0.661254 | 5_3:+66075890 | Msa0825990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTAACAAAATTTTT+AGG | + | chr5_3:66075814-66075833 | Msa0825990:CDS | 10.0% |
| !!! | AATTTTGTAACAAAATTTTT+AGG | + | chr5_3:66075814-66075833 | Msa0825990:CDS | 10.0% |
| !!! | TTTTCTTTTAATAGAATTCT+AGG | + | chr5_3:66075661-66075680 | Msa0825990:intron | 15.0% |
| !!! | TTTCTTTTAATAGAATTCTA+GGG | + | chr5_3:66075662-66075681 | Msa0825990:intron | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | - | chr5_3:66076037-66076056 | None:intergenic | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | - | chr5_3:66076038-66076057 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTAATAGAATTCT+AGG | + | chr5_3:66075661-66075680 | Msa0825990:intron | 15.0% |
| !!! | TTTCTTTTAATAGAATTCTA+GGG | + | chr5_3:66075662-66075681 | Msa0825990:intron | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | - | chr5_3:66076037-66076056 | None:intergenic | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | - | chr5_3:66076038-66076057 | None:intergenic | 15.0% |
| !! | TAAAGTTTATGAAAAACCAA+AGG | + | chr5_3:66075743-66075762 | Msa0825990:CDS | 20.0% |
| !! | ATCAAAAGATAATGTCTTAT+TGG | + | chr5_3:66076400-66076419 | Msa0825990:CDS | 20.0% |
| !! | TAAAGTTTATGAAAAACCAA+AGG | + | chr5_3:66075743-66075762 | Msa0825990:CDS | 20.0% |
| !! | ATCAAAAGATAATGTCTTAT+TGG | + | chr5_3:66076400-66076419 | Msa0825990:CDS | 20.0% |
| !! | TTATTCTTCTTTTGGTCATT+GGG | - | chr5_3:66075539-66075558 | None:intergenic | 25.0% |
| !! | CATCAAACTTATTCTTCTTT+TGG | - | chr5_3:66075547-66075566 | None:intergenic | 25.0% |
| ! | CAAAAGAAGAATAAGTTTGA+TGG | + | chr5_3:66075545-66075564 | Msa0825990:CDS | 25.0% |
| !! | TAAACTTTTCTTCTTCTCTA+TGG | - | chr5_3:66075703-66075722 | None:intergenic | 25.0% |
| !!! | TGTAACAAAATTTTTAGGTG+TGG | + | chr5_3:66075819-66075838 | Msa0825990:CDS | 25.0% |
| !!! | AAAATTTTTAGGTGTGGAAA+AGG | + | chr5_3:66075825-66075844 | Msa0825990:CDS | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | - | chr5_3:66076102-66076121 | None:intergenic | 25.0% |
| ! | ATCATCAATAACCAATTCTT+TGG | - | chr5_3:66076108-66076127 | None:intergenic | 25.0% |
| !!! | TTGATGATGAATCAAAATCT+TGG | + | chr5_3:66076120-66076139 | Msa0825990:CDS | 25.0% |
| !! | TGATGATGAATCAAAATCTT+GGG | + | chr5_3:66076121-66076140 | Msa0825990:CDS | 25.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | + | chr5_3:66076342-66076361 | Msa0825990:CDS | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | - | chr5_3:66076392-66076411 | None:intergenic | 25.0% |
| !! | TTATTCTTCTTTTGGTCATT+GGG | - | chr5_3:66075539-66075558 | None:intergenic | 25.0% |
| !! | CATCAAACTTATTCTTCTTT+TGG | - | chr5_3:66075547-66075566 | None:intergenic | 25.0% |
| ! | CAAAAGAAGAATAAGTTTGA+TGG | + | chr5_3:66075545-66075564 | Msa0825990:CDS | 25.0% |
| !! | TAAACTTTTCTTCTTCTCTA+TGG | - | chr5_3:66075703-66075722 | None:intergenic | 25.0% |
| !!! | TGTAACAAAATTTTTAGGTG+TGG | + | chr5_3:66075819-66075838 | Msa0825990:CDS | 25.0% |
| !!! | AAAATTTTTAGGTGTGGAAA+AGG | + | chr5_3:66075825-66075844 | Msa0825990:CDS | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | - | chr5_3:66076102-66076121 | None:intergenic | 25.0% |
| ! | ATCATCAATAACCAATTCTT+TGG | - | chr5_3:66076108-66076127 | None:intergenic | 25.0% |
| !!! | TTGATGATGAATCAAAATCT+TGG | + | chr5_3:66076120-66076139 | Msa0825990:CDS | 25.0% |
| !! | TGATGATGAATCAAAATCTT+GGG | + | chr5_3:66076121-66076140 | Msa0825990:CDS | 25.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | + | chr5_3:66076342-66076361 | Msa0825990:CDS | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | - | chr5_3:66076392-66076411 | None:intergenic | 25.0% |
| ! | CTTATTCTTCTTTTGGTCAT+TGG | - | chr5_3:66075540-66075559 | None:intergenic | 30.0% |
| AAGAAGAATAAGTTTGATGG+TGG | + | chr5_3:66075548-66075567 | Msa0825990:CDS | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | + | chr5_3:66075912-66075931 | Msa0825990:CDS | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | + | chr5_3:66075959-66075978 | Msa0825990:CDS | 30.0% | |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | + | chr5_3:66076152-66076171 | Msa0825990:CDS | 30.0% |
| GTTGTCGTGTAAATGTTTAT+CGG | - | chr5_3:66076231-66076250 | None:intergenic | 30.0% | |
| ! | CTTATTCTTCTTTTGGTCAT+TGG | - | chr5_3:66075540-66075559 | None:intergenic | 30.0% |
| AAGAAGAATAAGTTTGATGG+TGG | + | chr5_3:66075548-66075567 | Msa0825990:CDS | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | + | chr5_3:66075912-66075931 | Msa0825990:CDS | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | + | chr5_3:66075959-66075978 | Msa0825990:CDS | 30.0% | |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | + | chr5_3:66076152-66076171 | Msa0825990:CDS | 30.0% |
| GTTGTCGTGTAAATGTTTAT+CGG | - | chr5_3:66076231-66076250 | None:intergenic | 30.0% | |
| !! | AGAATAAGTTTGATGGTGGT+AGG | + | chr5_3:66075552-66075571 | Msa0825990:CDS | 35.0% |
| ! | CTTCTTCTCTATGGTTTTCA+TGG | - | chr5_3:66075694-66075713 | None:intergenic | 35.0% |
| !! | TCATCTTGATGATGATCCTT+TGG | - | chr5_3:66075762-66075781 | None:intergenic | 35.0% |
| AAGGATCATCATCAAGATGA+AGG | + | chr5_3:66075762-66075781 | Msa0825990:CDS | 35.0% | |
| TTTAGGTGTGGAAAAGGATT+AGG | + | chr5_3:66075831-66075850 | Msa0825990:CDS | 35.0% | |
| !! | CATGTAAAGCCTTATTGGAT+TGG | - | chr5_3:66075971-66075990 | None:intergenic | 35.0% |
| CAATCCAATAAGGCTTTACA+TGG | + | chr5_3:66075969-66075988 | Msa0825990:CDS | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | + | chr5_3:66076094-66076113 | Msa0825990:CDS | 35.0% | |
| ! | GCACGAAGATTGTTTAAAAC+CGG | + | chr5_3:66076143-66076162 | Msa0825990:CDS | 35.0% |
| TTTACACGACAACTTCAATG+AGG | + | chr5_3:66076238-66076257 | Msa0825990:CDS | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | + | chr5_3:66076262-66076281 | Msa0825990:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | + | chr5_3:66076287-66076306 | Msa0825990:CDS | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | + | chr5_3:66076352-66076371 | Msa0825990:CDS | 35.0% | |
| !! | AGAATAAGTTTGATGGTGGT+AGG | + | chr5_3:66075552-66075571 | Msa0825990:CDS | 35.0% |
| ! | CTTCTTCTCTATGGTTTTCA+TGG | - | chr5_3:66075694-66075713 | None:intergenic | 35.0% |
| !! | TCATCTTGATGATGATCCTT+TGG | - | chr5_3:66075762-66075781 | None:intergenic | 35.0% |
| AAGGATCATCATCAAGATGA+AGG | + | chr5_3:66075762-66075781 | Msa0825990:CDS | 35.0% | |
| TTTAGGTGTGGAAAAGGATT+AGG | + | chr5_3:66075831-66075850 | Msa0825990:CDS | 35.0% | |
| !! | CATGTAAAGCCTTATTGGAT+TGG | - | chr5_3:66075971-66075990 | None:intergenic | 35.0% |
| CAATCCAATAAGGCTTTACA+TGG | + | chr5_3:66075969-66075988 | Msa0825990:CDS | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | + | chr5_3:66076094-66076113 | Msa0825990:CDS | 35.0% | |
| ! | GCACGAAGATTGTTTAAAAC+CGG | + | chr5_3:66076143-66076162 | Msa0825990:CDS | 35.0% |
| TTTACACGACAACTTCAATG+AGG | + | chr5_3:66076238-66076257 | Msa0825990:CDS | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | + | chr5_3:66076262-66076281 | Msa0825990:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | + | chr5_3:66076287-66076306 | Msa0825990:CDS | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | + | chr5_3:66076352-66076371 | Msa0825990:CDS | 35.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | + | chr5_3:66075864-66075883 | Msa0825990:CDS | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | + | chr5_3:66075865-66075884 | Msa0825990:CDS | 40.0% | |
| ! | GTGACCATGTAAAGCCTTAT+TGG | - | chr5_3:66075976-66075995 | None:intergenic | 40.0% |
| CGACAACTTCAATGAGGATT+TGG | + | chr5_3:66076244-66076263 | Msa0825990:CDS | 40.0% | |
| CAATGAGGATTTGGATGATG+AGG | + | chr5_3:66076253-66076272 | Msa0825990:CDS | 40.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | + | chr5_3:66075864-66075883 | Msa0825990:CDS | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | + | chr5_3:66075865-66075884 | Msa0825990:CDS | 40.0% | |
| ! | GTGACCATGTAAAGCCTTAT+TGG | - | chr5_3:66075976-66075995 | None:intergenic | 40.0% |
| CGACAACTTCAATGAGGATT+TGG | + | chr5_3:66076244-66076263 | Msa0825990:CDS | 40.0% | |
| CAATGAGGATTTGGATGATG+AGG | + | chr5_3:66076253-66076272 | Msa0825990:CDS | 40.0% | |
| !! | TGATGGTGGTAGGATACATC+AGG | + | chr5_3:66075562-66075581 | Msa0825990:CDS | 45.0% |
| AGGTGTGGAAAAGGATTAGG+TGG | + | chr5_3:66075834-66075853 | Msa0825990:CDS | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | - | chr5_3:66075872-66075891 | None:intergenic | 45.0% | |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | + | chr5_3:66075872-66075891 | Msa0825990:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | + | chr5_3:66075873-66075892 | Msa0825990:CDS | 45.0% |
| ACATGAGATCTCACCCTGAA+AGG | + | chr5_3:66075994-66076013 | Msa0825990:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | + | chr5_3:66075995-66076014 | Msa0825990:CDS | 45.0% | |
| ! | GAGGGGTATGAACCCTAATA+AGG | + | chr5_3:66076022-66076041 | Msa0825990:CDS | 45.0% |
| ! | ACTCGAACGACCTCTTTTAC+CGG | - | chr5_3:66076165-66076184 | None:intergenic | 45.0% |
| CCAACAAGACCACTAGTACT+AGG | - | chr5_3:66076299-66076318 | None:intergenic | 45.0% | |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | + | chr5_3:66076296-66076315 | Msa0825990:CDS | 45.0% |
| !! | TGATGGTGGTAGGATACATC+AGG | + | chr5_3:66075562-66075581 | Msa0825990:CDS | 45.0% |
| AGGTGTGGAAAAGGATTAGG+TGG | + | chr5_3:66075834-66075853 | Msa0825990:CDS | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | - | chr5_3:66075872-66075891 | None:intergenic | 45.0% | |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | + | chr5_3:66075872-66075891 | Msa0825990:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | + | chr5_3:66075873-66075892 | Msa0825990:CDS | 45.0% |
| ACATGAGATCTCACCCTGAA+AGG | + | chr5_3:66075994-66076013 | Msa0825990:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | + | chr5_3:66075995-66076014 | Msa0825990:CDS | 45.0% | |
| ! | GAGGGGTATGAACCCTAATA+AGG | + | chr5_3:66076022-66076041 | Msa0825990:CDS | 45.0% |
| ! | ACTCGAACGACCTCTTTTAC+CGG | - | chr5_3:66076165-66076184 | None:intergenic | 45.0% |
| CCAACAAGACCACTAGTACT+AGG | - | chr5_3:66076299-66076318 | None:intergenic | 45.0% | |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | + | chr5_3:66076296-66076315 | Msa0825990:CDS | 45.0% |
| !! | AAAGAATATTAAATATAAAA+AGG | - | chr5_3:66075603-66075622 | None:intergenic | 5.0% |
| !! | AAAGAATATTAAATATAAAA+AGG | - | chr5_3:66075603-66075622 | None:intergenic | 5.0% |
| AGAGGGTGAGTCGAAAGCAA+AGG | + | chr5_3:66075890-66075909 | Msa0825990:CDS | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | + | chr5_3:66076000-66076019 | Msa0825990:CDS | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | + | chr5_3:66076004-66076023 | Msa0825990:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | - | chr5_3:66076010-66076029 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | - | chr5_3:66076011-66076030 | None:intergenic | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | + | chr5_3:66076164-66076183 | Msa0825990:CDS | 50.0% | |
| AGAGGGTGAGTCGAAAGCAA+AGG | + | chr5_3:66075890-66075909 | Msa0825990:CDS | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | + | chr5_3:66076000-66076019 | Msa0825990:CDS | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | + | chr5_3:66076004-66076023 | Msa0825990:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | - | chr5_3:66076010-66076029 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | - | chr5_3:66076011-66076030 | None:intergenic | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | + | chr5_3:66076164-66076183 | Msa0825990:CDS | 50.0% | |
| CTCACCCTGAAAGGGAATGG+AGG | + | chr5_3:66076003-66076022 | Msa0825990:CDS | 55.0% | |
| CACCCTGAAAGGGAATGGAG+GGG | + | chr5_3:66076005-66076024 | Msa0825990:CDS | 55.0% | |
| CTCACCCTGAAAGGGAATGG+AGG | + | chr5_3:66076003-66076022 | Msa0825990:CDS | 55.0% | |
| CACCCTGAAAGGGAATGGAG+GGG | + | chr5_3:66076005-66076024 | Msa0825990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 66075530 | 66076427 | 66075530 | ID=Msa0825990;Name=Msa0825990 |
| chr5_3 | mRNA | 66075530 | 66076427 | 66075530 | ID=Msa0825990-mRNA-1;Parent=Msa0825990;Name=Msa0825990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|268 |
| chr5_3 | exon | 66075530 | 66075583 | 66075530 | ID=Msa0825990-mRNA-1:exon:20697;Parent=Msa0825990-mRNA-1 |
| chr5_3 | exon | 66075675 | 66076427 | 66075675 | ID=Msa0825990-mRNA-1:exon:20698;Parent=Msa0825990-mRNA-1 |
| chr5_3 | CDS | 66075530 | 66075583 | 66075530 | ID=Msa0825990-mRNA-1:cds;Parent=Msa0825990-mRNA-1 |
| chr5_3 | CDS | 66075675 | 66076427 | 66075675 | ID=Msa0825990-mRNA-1:cds;Parent=Msa0825990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
