AlfalfaGEDB | Msa0827440

M. sativa cultivar zhongmu-4 / Msa0827440

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	AET00566.2	66.225	151	43	1	34	176	1	151	7.17e-52	187
Msa0827440	AET00566.2	91.883	308	25	0	1	308	130	437	0.0	579

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	sp\|Q6P819\|CNOT9_XENTR	53.846	260	119	1	43	301	28	287	2.25e-89	271

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	G7K8L3	66.225	151	43	1	34	176	1	151	3.42e-52	187
Msa0827440	G7K8L3	91.883	308	25	0	1	308	130	437	0.0	579

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0827440	TR	Rcd1-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	MtrunA17_Chr5g0444621	82.960	223	38	0	59	281	42	264	1.10e-132	377
Msa0827440	MtrunA17_Chr7g0224601	65.894	302	98	2	12	308	2	303	3.06e-128	367
Msa0827440	MtrunA17_Chr8g0392781	54.706	340	118	3	5	308	5	344	1.42e-114	335
Msa0827440	MtrunA17_Chr3g0099561	60.662	272	106	1	38	308	26	297	9.82e-110	320
Msa0827440	MtrunA17_Chr1g0177151	57.977	257	103	2	1	256	1	253	2.11e-98	290
Msa0827440	MtrunA17_Chr6g0477171	65.445	191	66	0	64	254	51	241	2.72e-78	239
Msa0827440	MtrunA17_Chr3g0083821	67.368	95	31	0	79	173	36	130	2.13e-37	129
Msa0827440	MtrunA17_Chr3g0083811	54.310	116	53	0	185	300	1	116	4.08e-35	123
Msa0827440	MtrunA17_Chr5g0444631	73.585	53	14	0	111	163	4	56	5.45e-19	79.3
Msa0827440	MtrunA17_Chr6g0477181	60.000	60	24	0	1	60	1	60	7.76e-15	69.3

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	AT3G20800.1	58.333	276	114	1	34	308	35	310	1.60e-105	310
Msa0827440	AT5G12980.1	54.167	264	120	1	38	300	35	298	1.44e-93	280
Msa0827440	AT2G32550.3	30.204	245	163	3	61	297	37	281	6.54e-28	109
Msa0827440	AT2G32550.2	29.577	284	188	6	26	297	37	320	1.28e-27	109
Msa0827440	AT2G32550.1	29.204	226	152	3	80	297	1	226	3.37e-23	95.9

Showing 1 to 5 of 5 entries

Previous1Next

Find 54 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTATGAAAATCTT+GGG	0.445862	5_3:+68685898	Msa0827440:CDS
AAAATGTTGTTAGACGTTGA+TGG	0.395577	5_3:+68684798	Msa0827440:CDS
AACGCCTTGTTATTGAACTT+AGG	0.532607	5_3:+68681517	Msa0827440:CDS
AACTGGGTAGAAGCCCTGAG+AGG	0.696390	5_3:-68681462	None:intergenic
AAGGAAACTCATGACTTCTT+TGG	0.319816	5_3:-68684540	None:intergenic
ACAAAGATGTCATTCCTCAA+TGG	0.552200	5_3:+68683410	Msa0827440:CDS
AGAGCATTTGCTCTTAGATC+TGG	0.364235	5_3:-68681543	None:intergenic
AGATTTAGTGGTGAAAGAGT+AGG	0.532575	5_3:-68683167	None:intergenic
AGGAAGATTCAACAACTTGG+AGG	0.584872	5_3:+68685868	Msa0827440:intron
AGGAATGACATCTTTGTATC+CGG	0.390087	5_3:-68683404	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATTCCTAAGTTCAATAACA+AGG	-	chr5_3:68681524-68681543	None:intergenic	30.0%
ACAAGTAAACCAAATCCTTA+GGG	+	chr5_3:68681640-68681659	Msa0827440:intron	30.0%
TTGAATCTATGTTGACATAG+AGG	-	chr5_3:68681707-68681726	None:intergenic	30.0%
CTAAACTATGCAACTTAGAT+CGG	-	chr5_3:68682253-68682272	None:intergenic	30.0%
CCAAAAGAATTCCACAATAA+AGG	-	chr5_3:68682428-68682447	None:intergenic	30.0%
ATAGATCTTTACTACCTGTT+AGG	+	chr5_3:68682557-68682576	Msa0827440:intron	30.0%
TGCATGTGTCTTACTTATAT+TGG	+	chr5_3:68682607-68682626	Msa0827440:intron	30.0%
GAAAATTGACATTACCATTG+AGG	-	chr5_3:68683427-68683446	None:intergenic	30.0%
GTAGACCGTTATATTAAGAA+TGG	+	chr5_3:68683612-68683631	Msa0827440:intron	30.0%
AGATCAGTTTATATTCATCG+TGG	+	chr5_3:68684368-68684387	Msa0827440:intron	30.0%

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	68681405	68685953	68681405	ID=Msa0827440;Name=Msa0827440
chr5_3	mRNA	68681405	68685953	68681405	ID=Msa0827440-mRNA-1;Parent=Msa0827440;Name=Msa0827440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|1\|1\|9\|0\|308
chr5_3	exon	68681405	68681581	68681405	ID=Msa0827440-mRNA-1:exon:21577;Parent=Msa0827440-mRNA-1
chr5_3	exon	68682401	68682469	68682401	ID=Msa0827440-mRNA-1:exon:21578;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683149	68683238	68683149	ID=Msa0827440-mRNA-1:exon:21579;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683389	68683431	68683389	ID=Msa0827440-mRNA-1:exon:21580;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683705	68683811	68683705	ID=Msa0827440-mRNA-1:exon:21581;Parent=Msa0827440-mRNA-1
chr5_3	exon	68684533	68684628	68684533	ID=Msa0827440-mRNA-1:exon:21582;Parent=Msa0827440-mRNA-1
chr5_3	exon	68684777	68684967	68684777	ID=Msa0827440-mRNA-1:exon:21583;Parent=Msa0827440-mRNA-1
chr5_3	exon	68685064	68685133	68685064	ID=Msa0827440-mRNA-1:exon:21584;Parent=Msa0827440-mRNA-1
chr5_3	exon	68685870	68685953	68685870	ID=Msa0827440-mRNA-1:exon:21585;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68681405	68681581	68681405	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68682401	68682469	68682401	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683149	68683238	68683149	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683389	68683431	68683389	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683705	68683811	68683705	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68684533	68684628	68684533	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68684777	68684967	68684777	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68685064	68685133	68685064	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68685870	68685953	68685870	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1

Gene Sequence

>Msa0827440

ATTGAAAATTCTTCTCCACGATCGATGTCAACAAAGAGTGATGCTTCATTTGTAGCTCCTCTCAGGGCTTCTACCCAGTTTAGCACCACTGCTCATATGATGGTGGACATGAAACGCCTTGTTATTGAACTTAGGAATCCAGATCTAAGAGCAAATGCTCTTCGTGTGCTTTCCAAGATGACGTCATTTCAGGAGCTTGCACCTTTATTGTGGAATTCTTTTGGTACTATTACAATACTTGTGCAAGAAATAATTTCAATATATCCTACTCTTTCACCACTAAATCTTACTCCAACACAATCAACTCGAATGTGCGATGTTCTTGCGCTACTTCTGTGTGTAGCATCTCACCCGGATACAAAGATGTCATTCCTCAATGCTAACATGCACTTATATTTATATCCATTCCTTCAAACGACAAGTAATTTAACACAATATGAGTGGTTGAGGCTTGGTAGTCTTGGAGTCATTGGTGCTTTGGTGAAGGTTAACACCAAAGAAGTCATGAGTTTCCTTCTTCCAAGTGAAATAATTCCACTATGCTTGGGTTGTATGGAAATCGACAAGGAGCCATCAAAATCTGTTGGAACATTTATCATTCATAAAATGTTGTTAGACGTTGATGGTTTGGCTTATGTTGGTGATACAGCAGAGCAATTTTTTACAGTAGCTCGAGTTTTTGACATGATGCTGTCAAGTTTTGAGAATCAACATTCACCTCGTTTGTTGAAGCTTATAATTCGATGCTATTCTCGTTTGTCTGAACATAGCAGGGCTCGCAGTGCATTAACAAGTTGTCTTCCAGACATTCTCAAAGATTCCAATTTCATCAATTGTCTTCATGAAGATTCAACAACTTGGAGGTGCATAAAAAAGTTGTATGAAAATCTTGGGATGAATCAAGCTTTTTTAGTACCTGGTGGATGA

Protein sequence

>Msa0827440

IENSSPRSMSTKSDASFVAPLRASTQFSTTAHMMVDMKRLVIELRNPDLRANALRVLSKMTSFQELAPLLWNSFGTITILVQEIISIYPTLSPLNLTPTQSTRMCDVLALLLCVASHPDTKMSFLNANMHLYLYPFLQTTSNLTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPSEIIPLCLGCMEIDKEPSKSVGTFIIHKMLLDVDGLAYVGDTAEQFFTVARVFDMMLSSFENQHSPRLLKLIIRCYSRLSEHSRARSALTSCLPDILKDSNFINCLHEDSTTWRCIKKLYENLGMNQAFLVPGG*