AlfalfaGEDB | Msa0827440

M. sativa cultivar zhongmu-4 / Msa0827440

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	AET00566.2	66.225	151	43	1	34	176	1	151	7.17e-52	187
Msa0827440	AET00566.2	91.883	308	25	0	1	308	130	437	0.0	579

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	sp\|Q6P819\|CNOT9_XENTR	53.846	260	119	1	43	301	28	287	2.25e-89	271

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	G7K8L3	66.225	151	43	1	34	176	1	151	3.42e-52	187
Msa0827440	G7K8L3	91.883	308	25	0	1	308	130	437	0.0	579

TFs/TRs:

Gene ID	Type	Classification
Msa0827440	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	MtrunA17_Chr5g0444621	82.960	223	38	0	59	281	42	264	1.10e-132	377
Msa0827440	MtrunA17_Chr7g0224601	65.894	302	98	2	12	308	2	303	3.06e-128	367
Msa0827440	MtrunA17_Chr8g0392781	54.706	340	118	3	5	308	5	344	1.42e-114	335
Msa0827440	MtrunA17_Chr3g0099561	60.662	272	106	1	38	308	26	297	9.82e-110	320
Msa0827440	MtrunA17_Chr1g0177151	57.977	257	103	2	1	256	1	253	2.11e-98	290
Msa0827440	MtrunA17_Chr6g0477171	65.445	191	66	0	64	254	51	241	2.72e-78	239
Msa0827440	MtrunA17_Chr3g0083821	67.368	95	31	0	79	173	36	130	2.13e-37	129
Msa0827440	MtrunA17_Chr3g0083811	54.310	116	53	0	185	300	1	116	4.08e-35	123
Msa0827440	MtrunA17_Chr5g0444631	73.585	53	14	0	111	163	4	56	5.45e-19	79.3
Msa0827440	MtrunA17_Chr6g0477181	60.000	60	24	0	1	60	1	60	7.76e-15	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827440	AT3G20800.1	58.333	276	114	1	34	308	35	310	1.60e-105	310
Msa0827440	AT5G12980.1	54.167	264	120	1	38	300	35	298	1.44e-93	280
Msa0827440	AT2G32550.3	30.204	245	163	3	61	297	37	281	6.54e-28	109
Msa0827440	AT2G32550.2	29.577	284	188	6	26	297	37	320	1.28e-27	109
Msa0827440	AT2G32550.1	29.204	226	152	3	80	297	1	226	3.37e-23	95.9

Find 54 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAGACAATTGATGAAAT+TGG	0.182381	5_3:-68685111	None:intergenic
ATTTCAGATGACGTCATTTC+AGG	0.232530	5_3:+68682394	Msa0827440:intron
CCTTTATTGTGGAATTCTTT+TGG	0.239207	5_3:+68682425	Msa0827440:CDS
TATGAGCAGTGGTGCTAAAC+TGG	0.287121	5_3:-68681479	None:intergenic
TCCACTATGCTTGGGTTGTA+TGG	0.297190	5_3:+68684580	Msa0827440:CDS
CGATGTTCTTGCGCTACTTC+TGG	0.299500	5_3:+68683217	Msa0827440:CDS
AAGGAAACTCATGACTTCTT+TGG	0.319816	5_3:-68684540	None:intergenic
CTTGGTAGTCTTGGAGTCAT+TGG	0.346879	5_3:+68683776	Msa0827440:CDS
CTTCATTTGTAGCTCCTCTC+AGG	0.352750	5_3:+68681448	Msa0827440:CDS
CCAAAAGAATTCCACAATAA+AGG	0.356330	5_3:-68682425	None:intergenic
AGAGCATTTGCTCTTAGATC+TGG	0.364235	5_3:-68681543	None:intergenic
TGAAATAATTCCACTATGCT+TGG	0.366345	5_3:+68684571	Msa0827440:CDS
TTGGAATCTTTGAGAATGTC+TGG	0.372338	5_3:-68685092	None:intergenic
TTAAATTACTTGTCGTTTGA+AGG	0.381214	5_3:-68683733	None:intergenic
AGGAATGACATCTTTGTATC+CGG	0.390087	5_3:-68683404	None:intergenic
AAAATGTTGTTAGACGTTGA+TGG	0.395577	5_3:+68684798	Msa0827440:CDS
TCTTGGAGTCATTGGTGCTT+TGG	0.402629	5_3:+68683784	Msa0827440:CDS
TTACTTGTCGTTTGAAGGAA+TGG	0.412465	5_3:-68683728	None:intergenic
GTTGTTAGACGTTGATGGTT+TGG	0.426908	5_3:+68684803	Msa0827440:CDS
CTCGTTTGTCTGAACATAGC+AGG	0.439986	5_3:+68684946	Msa0827440:CDS
CACATTCGAGTTGATTGTGT+TGG	0.440645	5_3:-68683194	None:intergenic
GAAATAATTCCACTATGCTT+GGG	0.444586	5_3:+68684572	Msa0827440:CDS
AAAAGTTGTATGAAAATCTT+GGG	0.445862	5_3:+68685898	Msa0827440:CDS
CATAGTGGAATTATTTCACT+TGG	0.458939	5_3:-68684566	None:intergenic
TGGTTGAGGCTTGGTAGTCT+TGG	0.464688	5_3:+68683767	Msa0827440:CDS
TGTGTTGGAGTAAGATTTAG+TGG	0.471165	5_3:-68683179	None:intergenic
TGCTCTTCGTGTGCTTTCCA+AGG	0.477321	5_3:+68681560	Msa0827440:CDS
GAATTATTTCACTTGGAAGA+AGG	0.485164	5_3:-68684559	None:intergenic
TAACACAATATGAGTGGTTG+AGG	0.491507	5_3:+68683753	Msa0827440:CDS
TTCAGGAAGATTCAACAACT+TGG	0.491745	5_3:+68685865	Msa0827440:intron
GAAAATTGACATTACCATTG+AGG	0.492991	5_3:-68683424	None:intergenic
AGGAGCTTGCACCTTTATTG+TGG	0.506558	5_3:+68682414	Msa0827440:CDS
TTCATTTGTAGCTCCTCTCA+GGG	0.519648	5_3:+68681449	Msa0827440:CDS
AGATTTAGTGGTGAAAGAGT+AGG	0.532575	5_3:-68683167	None:intergenic
AACGCCTTGTTATTGAACTT+AGG	0.532607	5_3:+68681517	Msa0827440:CDS
CAATATGAGTGGTTGAGGCT+TGG	0.532866	5_3:+68683758	Msa0827440:CDS
CTCTTTGTTGACATCGATCG+TGG	0.537332	5_3:-68681420	None:intergenic
GTTGATGGTTTGGCTTATGT+TGG	0.552096	5_3:+68684813	Msa0827440:CDS
ACAAAGATGTCATTCCTCAA+TGG	0.552200	5_3:+68683410	Msa0827440:CDS
TCCATACAACCCAAGCATAG+TGG	0.555182	5_3:-68684581	None:intergenic
TAGCACCACTGCTCATATGA+TGG	0.556679	5_3:+68681485	Msa0827440:CDS
GGAATGACATCTTTGTATCC+GGG	0.558198	5_3:-68683403	None:intergenic
AGTCATTGGTGCTTTGGTGA+AGG	0.559413	5_3:+68683790	Msa0827440:CDS
AGGAAGATTCAACAACTTGG+AGG	0.584872	5_3:+68685868	Msa0827440:intron
TCTTTGTTTCTTCATCCACC+AGG	0.598490	5_3:-68685942	None:intergenic
ATGAGCAGTGGTGCTAAACT+GGG	0.605309	5_3:-68681478	None:intergenic
GTAATTTAACACAATATGAG+TGG	0.620131	5_3:+68683747	Msa0827440:CDS
GTCCACCATCATATGAGCAG+TGG	0.629949	5_3:-68681490	None:intergenic
CACCACTGCTCATATGATGG+TGG	0.655595	5_3:+68681488	Msa0827440:CDS
GATTCCTAAGTTCAATAACA+AGG	0.670050	5_3:-68681521	None:intergenic
ATAGTGTGTAGCATCTCACC+CGG	0.679113	5_3:+68683385	Msa0827440:intron
AACTGGGTAGAAGCCCTGAG+AGG	0.696390	5_3:-68681462	None:intergenic
GGGTTGTATGGAAATCGACA+AGG	0.706182	5_3:+68684592	Msa0827440:CDS
ATTATAAGCTTCAACAAACG+AGG	0.715153	5_3:-68684912	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATATTTTAAATTTTTAT+TGG	-	chr5_3:68685454-68685473	None:intergenic	0.0%
!!	ATATATAATATATATTAAAT+TGG	+	chr5_3:68685726-68685745	Msa0827440:intron	0.0%
!!!	GAAACTTTTATATTAAAAAT+TGG	+	chr5_3:68682311-68682330	Msa0827440:intron	10.0%
!!	AAGATCTATAAATATTTAAA+AGG	-	chr5_3:68682546-68682565	None:intergenic	10.0%
!!!	TATTTTCACAATTAAAAAAA+TGG	+	chr5_3:68682851-68682870	Msa0827440:intron	10.0%
!!!	ATTTTTTAATAATAAATCAG+TGG	-	chr5_3:68685330-68685349	None:intergenic	10.0%
!!!	TTCATTTTTTATTTGTTTCA+TGG	+	chr5_3:68681612-68681631	Msa0827440:intron	15.0%
!!!	TCATTTTTTATTTGTTTCAT+GGG	+	chr5_3:68681613-68681632	Msa0827440:intron	15.0%
!!	ATAATAATGTGATAGTTAAT+AGG	+	chr5_3:68682139-68682158	Msa0827440:intron	15.0%
!!!	TTCTTTATAGATAACTTTTT+TGG	-	chr5_3:68682187-68682206	None:intergenic	15.0%
!!	GAAAAATTTACCTTAAAAAT+AGG	+	chr5_3:68682207-68682226	Msa0827440:intron	15.0%
!!	TTCATAAACTAAAAAAAGAA+GGG	-	chr5_3:68682741-68682760	None:intergenic	15.0%
!!	ATTCATAAACTAAAAAAAGA+AGG	-	chr5_3:68682742-68682761	None:intergenic	15.0%
!!	ATATATTGAAATTATTTCCT+GGG	-	chr5_3:68683147-68683166	None:intergenic	15.0%
!!!	ATAAGTTTTTGAATTGTATT+TGG	+	chr5_3:68683258-68683277	Msa0827440:intron	15.0%
!!	AGTTATCAAATTAAATATTG+TGG	-	chr5_3:68683501-68683520	None:intergenic	15.0%
!!	AATTATCATTAATGATATGT+AGG	+	chr5_3:68683536-68683555	Msa0827440:intron	15.0%
!!	AATTCTTTATAATCAGATTT+AGG	+	chr5_3:68683577-68683596	Msa0827440:intron	15.0%
!!!	ACTATATTCTCTTTTTATTA+TGG	-	chr5_3:68683887-68683906	None:intergenic	15.0%
!!	ATAAAAAGAGAATATAGTTA+CGG	+	chr5_3:68683889-68683908	Msa0827440:intron	15.0%
!!!	ATTGACTATTTTAAAGTTTA+TGG	+	chr5_3:68684033-68684052	Msa0827440:intron	15.0%
!!!	AAGTTTTAATGGAAATTATA+AGG	-	chr5_3:68684126-68684145	None:intergenic	15.0%
!!!	ATTGTTGATAACAATTTTAA+TGG	+	chr5_3:68684178-68684197	Msa0827440:intron	15.0%
!!	ATTAAAAAGAAGAAATAGTT+AGG	-	chr5_3:68684408-68684427	None:intergenic	15.0%
!!	TGACAAATTATAGATAAATA+GGG	-	chr5_3:68684474-68684493	None:intergenic	15.0%
!!	TTGACAAATTATAGATAAAT+AGG	-	chr5_3:68684475-68684494	None:intergenic	15.0%
!!	AACTTCTTTCATATTAAAAT+AGG	+	chr5_3:68685042-68685061	Msa0827440:intron	15.0%
!!	ACTTCTTTCATATTAAAATA+GGG	+	chr5_3:68685043-68685062	Msa0827440:intron	15.0%
!!	ATTAAATACACATTTCATTT+AGG	+	chr5_3:68685154-68685173	Msa0827440:intron	15.0%
!!	ACTATTTCAGATATTTAAAT+TGG	+	chr5_3:68685775-68685794	Msa0827440:intron	15.0%
!!	AAGATGTTTAATCTAGAAAA+AGG	-	chr5_3:68681760-68681779	None:intergenic	20.0%
!!!	TTTTCTAGATTAAACATCTT+TGG	+	chr5_3:68681760-68681779	Msa0827440:intron	20.0%
!!!	ACATCTTTGGTTTAATTTTT+CGG	+	chr5_3:68681773-68681792	Msa0827440:intron	20.0%
!!	ATGAGTTTGAAAAACATTAT+AGG	-	chr5_3:68682344-68682363	None:intergenic	20.0%
!!	AAAAATTATCATTCTGCAAT+TGG	+	chr5_3:68682633-68682652	Msa0827440:intron	20.0%
!!	GGAAACACATAAATATAAAT+TGG	-	chr5_3:68682800-68682819	None:intergenic	20.0%
!!	TAAAAAAATGGACATGATTA+TGG	+	chr5_3:68682863-68682882	Msa0827440:intron	20.0%
!!	AAAAAAATGGACATGATTAT+GGG	+	chr5_3:68682864-68682883	Msa0827440:intron	20.0%
!!!	TTTTAAAATAATTGTCCAAG+AGG	+	chr5_3:68682933-68682952	Msa0827440:intron	20.0%
!!	GATATATTGAAATTATTTCC+TGG	-	chr5_3:68683148-68683167	None:intergenic	20.0%
!!!	TTTTCCCATTCTTAATATAA+CGG	-	chr5_3:68683620-68683639	None:intergenic	20.0%
!!!	GTGTGTTTAATAAGTTTTAA+TGG	+	chr5_3:68683855-68683874	Msa0827440:intron	20.0%
!!	AAAAAACTATTTACTTCTAC+CGG	+	chr5_3:68684074-68684093	Msa0827440:intron	20.0%
!!!	ATTTCCATTAAAACTTTTAG+TGG	+	chr5_3:68684130-68684149	Msa0827440:intron	20.0%
!!	ATCAACAATTAATTGATTGT+GGG	-	chr5_3:68684167-68684186	None:intergenic	20.0%
!!	TATCAACAATTAATTGATTG+TGG	-	chr5_3:68684168-68684187	None:intergenic	20.0%
!!!	TTGATAACAATTTTAATGGT+CGG	+	chr5_3:68684182-68684201	Msa0827440:intron	20.0%
!!	GTTCTATGAAAATTCATATA+AGG	+	chr5_3:68684317-68684336	Msa0827440:intron	20.0%
!!!	TGAAAATTCATATAAGGTTT+TGG	+	chr5_3:68684323-68684342	Msa0827440:intron	20.0%
!!	TGAATATCATGTATAACAAA+AGG	-	chr5_3:68684510-68684529	None:intergenic	20.0%
!!!	AAAATGCTCTAAAACTAAAT+TGG	-	chr5_3:68684659-68684678	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACA+TGG	+	chr5_3:68684677-68684696	Msa0827440:intron	20.0%
!!	AAAACATATTATGACATATC+AGG	-	chr5_3:68685192-68685211	None:intergenic	20.0%
!!!	TCAAAATATTCCTTTTTGTT+GGG	-	chr5_3:68685428-68685447	None:intergenic	20.0%
!!!	TTCAAAATATTCCTTTTTGT+TGG	-	chr5_3:68685429-68685448	None:intergenic	20.0%
!!!	TTTATAAATTTTATGCTAGC+AGG	-	chr5_3:68685549-68685568	None:intergenic	20.0%
!!!	GATATTGTTTTGATTTTTTC+AGG	+	chr5_3:68685848-68685867	Msa0827440:intron	20.0%
!!	AAAAAGTTGTATGAAAATCT+TGG	+	chr5_3:68685897-68685916	Msa0827440:CDS	20.0%
!!	AAAAGTTGTATGAAAATCTT+GGG	+	chr5_3:68685898-68685917	Msa0827440:CDS	20.0%
!	AAAATGAACAACAAACTGAA+AGG	-	chr5_3:68681600-68681619	None:intergenic	25.0%
!	GTTCATTAATTAGTGTATCA+CGG	+	chr5_3:68681837-68681856	Msa0827440:intron	25.0%
!	TTCATTAATTAGTGTATCAC+GGG	+	chr5_3:68681838-68681857	Msa0827440:intron	25.0%
!	CAAGAAAGAGATAATTAGAA+AGG	+	chr5_3:68682099-68682118	Msa0827440:intron	25.0%
!	ATGTGATAGTTAATAGGATT+TGG	+	chr5_3:68682145-68682164	Msa0827440:intron	25.0%
!	TTTACCTTAAAAATAGGACT+AGG	+	chr5_3:68682213-68682232	Msa0827440:intron	25.0%
!!	ATTAAATCTTGTTTCCTAAC+AGG	-	chr5_3:68682574-68682593	None:intergenic	25.0%
!	AAACTAAAAAAAGAAGGGAA+AGG	-	chr5_3:68682736-68682755	None:intergenic	25.0%
!	TCACATTGAAAAGTAAAAGT+TGG	-	chr5_3:68682821-68682840	None:intergenic	25.0%
!	AAAAAATGGACATGATTATG+GGG	+	chr5_3:68682865-68682884	Msa0827440:intron	25.0%
!!!	AGTTTAGTTTTGTAAGATCA+AGG	+	chr5_3:68682977-68682996	Msa0827440:intron	25.0%
!!!	GTTTAGTTTTGTAAGATCAA+GGG	+	chr5_3:68682978-68682997	Msa0827440:intron	25.0%
!	TATCAATTTACAATTGTACG+AGG	-	chr5_3:68683019-68683038	None:intergenic	25.0%
!	TAGACCGTTATATTAAGAAT+GGG	+	chr5_3:68683613-68683632	Msa0827440:intron	25.0%
!!	TTAAATTACTTGTCGTTTGA+AGG	-	chr5_3:68683736-68683755	None:intergenic	25.0%
!	GTAATTTAACACAATATGAG+TGG	+	chr5_3:68683747-68683766	Msa0827440:CDS	25.0%
!	TGTGAAACTAAATTTGACAA+TGG	+	chr5_3:68683938-68683957	Msa0827440:intron	25.0%
!	ATGGAAATTATAAGGAATGA+TGG	-	chr5_3:68684118-68684137	None:intergenic	25.0%
!	TTGTTATACATGATATTCAC+AGG	+	chr5_3:68684511-68684530	Msa0827440:intron	25.0%
!	ATAAAGTTGTATATCAATGC+AGG	+	chr5_3:68684755-68684774	Msa0827440:intron	25.0%
!	ATGAAGACAATTGATGAAAT+TGG	-	chr5_3:68685114-68685133	None:intergenic	25.0%
!!!	AAATTAAAGAAGTGTCACAT+AGG	+	chr5_3:68685656-68685675	Msa0827440:intron	25.0%
!!!	GGAATTCTAAGGTATTTAAT+TGG	+	chr5_3:68685688-68685707	Msa0827440:intron	25.0%
!	GGTCACATATTTGATTATAT+TGG	+	chr5_3:68685747-68685766	Msa0827440:intron	25.0%
	GATTCCTAAGTTCAATAACA+AGG	-	chr5_3:68681524-68681543	None:intergenic	30.0%
	ACAAGTAAACCAAATCCTTA+GGG	+	chr5_3:68681640-68681659	Msa0827440:intron	30.0%
	TTGAATCTATGTTGACATAG+AGG	-	chr5_3:68681707-68681726	None:intergenic	30.0%
!	TTTTATGAACTTGTGTTAGC+TGG	+	chr5_3:68681977-68681996	Msa0827440:intron	30.0%
!	TTGCACATTTTTATGCTTCT+TGG	-	chr5_3:68682082-68682101	None:intergenic	30.0%
!!!	TGATCCTAGTCCTATTTTTA+AGG	-	chr5_3:68682220-68682239	None:intergenic	30.0%
	CTAAACTATGCAACTTAGAT+CGG	-	chr5_3:68682253-68682272	None:intergenic	30.0%
	CCAAAAGAATTCCACAATAA+AGG	-	chr5_3:68682428-68682447	None:intergenic	30.0%
!	CCTTTATTGTGGAATTCTTT+TGG	+	chr5_3:68682425-68682444	Msa0827440:CDS	30.0%
	ATAGATCTTTACTACCTGTT+AGG	+	chr5_3:68682557-68682576	Msa0827440:intron	30.0%
	TGCATGTGTCTTACTTATAT+TGG	+	chr5_3:68682607-68682626	Msa0827440:intron	30.0%
	GAAAATTGACATTACCATTG+AGG	-	chr5_3:68683427-68683446	None:intergenic	30.0%
	GTAGACCGTTATATTAAGAA+TGG	+	chr5_3:68683612-68683631	Msa0827440:intron	30.0%
!!	AGCACCACTAAAAGTTTTAA+TGG	-	chr5_3:68684137-68684156	None:intergenic	30.0%
	AGATCAGTTTATATTCATCG+TGG	+	chr5_3:68684368-68684387	Msa0827440:intron	30.0%
	GATCAGTTTATATTCATCGT+GGG	+	chr5_3:68684369-68684388	Msa0827440:intron	30.0%
	GAATTATTTCACTTGGAAGA+AGG	-	chr5_3:68684562-68684581	None:intergenic	30.0%
!	CATAGTGGAATTATTTCACT+TGG	-	chr5_3:68684569-68684588	None:intergenic	30.0%
	TGAAATAATTCCACTATGCT+TGG	+	chr5_3:68684571-68684590	Msa0827440:CDS	30.0%
	GAAATAATTCCACTATGCTT+GGG	+	chr5_3:68684572-68684591	Msa0827440:CDS	30.0%
	TGGCAAAACAACAATAATAG+AGG	-	chr5_3:68684639-68684658	None:intergenic	30.0%
	AAAATGTTGTTAGACGTTGA+TGG	+	chr5_3:68684798-68684817	Msa0827440:CDS	30.0%
	ATTATAAGCTTCAACAAACG+AGG	-	chr5_3:68684915-68684934	None:intergenic	30.0%
	ATATGACAAGACCTGTTATA+TGG	+	chr5_3:68685247-68685266	Msa0827440:intron	30.0%
!	TCAATGGCTATTAGTTTAGA+AGG	+	chr5_3:68685350-68685369	Msa0827440:intron	30.0%
!	CAATGGCTATTAGTTTAGAA+GGG	+	chr5_3:68685351-68685370	Msa0827440:intron	30.0%
	TAAGTTTAGTGTTACACTTG+CGG	+	chr5_3:68685386-68685405	Msa0827440:intron	30.0%
!!	AGTCTTGTTTGAATATGAAG+AGG	+	chr5_3:68685626-68685645	Msa0827440:intron	30.0%
!!!	AATCAAGCTTTTTTAGTACC+TGG	+	chr5_3:68685924-68685943	Msa0827440:CDS	30.0%
!!	AACGCCTTGTTATTGAACTT+AGG	+	chr5_3:68681517-68681536	Msa0827440:CDS	35.0%
	AGGTAGATTAGTAAGAACCT+TGG	-	chr5_3:68681580-68681599	None:intergenic	35.0%
	CACAAGTAAACCAAATCCTT+AGG	+	chr5_3:68681639-68681658	Msa0827440:intron	35.0%
	ATTTCAGATGACGTCATTTC+AGG	+	chr5_3:68682394-68682413	Msa0827440:intron	35.0%
!	GAAAAATATGCTGGTAGTGT+GGG	+	chr5_3:68682657-68682676	Msa0827440:intron	35.0%
!	TTTTAGCCACTGTCCTTTAT+CGG	+	chr5_3:68682686-68682705	Msa0827440:intron	35.0%
!	CGAGTAATGATATTTTTCCC+AGG	+	chr5_3:68683127-68683146	Msa0827440:intron	35.0%
	AGATTTAGTGGTGAAAGAGT+AGG	-	chr5_3:68683170-68683189	None:intergenic	35.0%
	TGTGTTGGAGTAAGATTTAG+TGG	-	chr5_3:68683182-68683201	None:intergenic	35.0%
!!	ATATGAGAGAAGAGTGTTAG+AGG	-	chr5_3:68683358-68683377	None:intergenic	35.0%
	AGGAATGACATCTTTGTATC+CGG	-	chr5_3:68683407-68683426	None:intergenic	35.0%
	ACAAAGATGTCATTCCTCAA+TGG	+	chr5_3:68683410-68683429	Msa0827440:CDS	35.0%
	ATATAAGTGCATGTTAGCTG+CGG	-	chr5_3:68683702-68683721	None:intergenic	35.0%
!	TTACTTGTCGTTTGAAGGAA+TGG	-	chr5_3:68683731-68683750	None:intergenic	35.0%
	TAACACAATATGAGTGGTTG+AGG	+	chr5_3:68683753-68683772	Msa0827440:CDS	35.0%
!!	TGAAGGTATTACATCTTTGC+TGG	+	chr5_3:68683807-68683826	Msa0827440:intron	35.0%
	GTAAATGCATGTGTAATTGC+CGG	-	chr5_3:68684096-68684115	None:intergenic	35.0%
!!	ATTTTAATGGTCGGTTGAGT+TGG	+	chr5_3:68684191-68684210	Msa0827440:intron	35.0%
	TTTCAATCTGATTGTGCTCT+TGG	+	chr5_3:68684259-68684278	Msa0827440:intron	35.0%
	AAGGAAACTCATGACTTCTT+TGG	-	chr5_3:68684543-68684562	None:intergenic	35.0%
!	GAGGAACTAACAGATTTTGA+TGG	-	chr5_3:68684620-68684639	None:intergenic	35.0%
	AGTTGTATATCAATGCAGGT+TGG	+	chr5_3:68684759-68684778	Msa0827440:intron	35.0%
!	TTGGAATCTTTGAGAATGTC+TGG	-	chr5_3:68685095-68685114	None:intergenic	35.0%
	GTCTTCATGTAAGTACTTCT+TGG	+	chr5_3:68685126-68685145	Msa0827440:intron	35.0%
!!	CTTTTAGGTACACAACCTAA+TGG	+	chr5_3:68685273-68685292	Msa0827440:intron	35.0%
	GCATGATACACAAATCCATT+AGG	-	chr5_3:68685291-68685310	None:intergenic	35.0%
	TACACTTGCGGTATTTGTAT+AGG	+	chr5_3:68685398-68685417	Msa0827440:intron	35.0%
	ACACTTGCGGTATTTGTATA+GGG	+	chr5_3:68685399-68685418	Msa0827440:intron	35.0%
!!	TTAAAGAAGTGTCACATAGG+TGG	+	chr5_3:68685659-68685678	Msa0827440:intron	35.0%
!!	TAAAGAAGTGTCACATAGGT+GGG	+	chr5_3:68685660-68685679	Msa0827440:intron	35.0%
	TTCAGGAAGATTCAACAACT+TGG	+	chr5_3:68685865-68685884	Msa0827440:intron	35.0%
	TTCATTTGTAGCTCCTCTCA+GGG	+	chr5_3:68681449-68681468	Msa0827440:CDS	40.0%
!	AGAGCATTTGCTCTTAGATC+TGG	-	chr5_3:68681546-68681565	None:intergenic	40.0%
	ATCACAACTCCCTAAGGATT+TGG	-	chr5_3:68681652-68681671	None:intergenic	40.0%
!	TAGAGTATCACAACTCCCTA+AGG	-	chr5_3:68681658-68681677	None:intergenic	40.0%
	GATTTGGATGAAAGCGACAA+TGG	+	chr5_3:68682161-68682180	Msa0827440:intron	40.0%
	CAAGATACTAACGCACAGAA+AGG	-	chr5_3:68682513-68682532	None:intergenic	40.0%
	GCAATTGGCGAAAAATATGC+TGG	+	chr5_3:68682648-68682667	Msa0827440:intron	40.0%
!	CGAAAAATATGCTGGTAGTG+TGG	+	chr5_3:68682656-68682675	Msa0827440:intron	40.0%
	GGAAAGGATGATAGTTACGA+AGG	-	chr5_3:68682720-68682739	None:intergenic	40.0%
	AAATGGACATGATTATGGGG+AGG	+	chr5_3:68682868-68682887	Msa0827440:intron	40.0%
	AATGGACATGATTATGGGGA+GGG	+	chr5_3:68682869-68682888	Msa0827440:intron	40.0%
	ATTGATGAGCTAGTACCTCT+TGG	-	chr5_3:68682951-68682970	None:intergenic	40.0%
!!	CACATTCGAGTTGATTGTGT+TGG	-	chr5_3:68683197-68683216	None:intergenic	40.0%
	GGAATGACATCTTTGTATCC+GGG	-	chr5_3:68683406-68683425	None:intergenic	40.0%
!!	GTTGTTAGACGTTGATGGTT+TGG	+	chr5_3:68684803-68684822	Msa0827440:CDS	40.0%
!!	GTTGATGGTTTGGCTTATGT+TGG	+	chr5_3:68684813-68684832	Msa0827440:CDS	40.0%
	TTTGTCTGAACATAGCAGGT+TGG	+	chr5_3:68684950-68684969	Msa0827440:intron	40.0%
	TGACAAGACCTGTTATATGG+TGG	+	chr5_3:68685250-68685269	Msa0827440:intron	40.0%
	CCTAAAAGCCACCATATAAC+AGG	-	chr5_3:68685261-68685280	None:intergenic	40.0%
!	CCTGTTATATGGTGGCTTTT+AGG	+	chr5_3:68685258-68685277	Msa0827440:intron	40.0%
	CACTTGCGGTATTTGTATAG+GGG	+	chr5_3:68685400-68685419	Msa0827440:intron	40.0%
	AGGAAGATTCAACAACTTGG+AGG	+	chr5_3:68685868-68685887	Msa0827440:intron	40.0%
!!!	CAAGCTTTTTTAGTACCTGG+TGG	+	chr5_3:68685927-68685946	Msa0827440:CDS	40.0%
	CTCTTTGTTGACATCGATCG+TGG	-	chr5_3:68681423-68681442	None:intergenic	45.0%
	CTTCATTTGTAGCTCCTCTC+AGG	+	chr5_3:68681448-68681467	Msa0827440:CDS	45.0%
!	ATGAGCAGTGGTGCTAAACT+GGG	-	chr5_3:68681481-68681500	None:intergenic	45.0%
!	TATGAGCAGTGGTGCTAAAC+TGG	-	chr5_3:68681482-68681501	None:intergenic	45.0%
	TAGCACCACTGCTCATATGA+TGG	+	chr5_3:68681485-68681504	Msa0827440:CDS	45.0%
	AGGAGCTTGCACCTTTATTG+TGG	+	chr5_3:68682414-68682433	Msa0827440:CDS	45.0%
	TGTCATCCGATAAAGGACAG+TGG	-	chr5_3:68682695-68682714	None:intergenic	45.0%
!!	GAAGGAGTGTCATCCGATAA+AGG	-	chr5_3:68682702-68682721	None:intergenic	45.0%
	ATAGTGTGTAGCATCTCACC+CGG	+	chr5_3:68683385-68683404	Msa0827440:intron	45.0%
	CAATATGAGTGGTTGAGGCT+TGG	+	chr5_3:68683758-68683777	Msa0827440:CDS	45.0%
!	CTTGGTAGTCTTGGAGTCAT+TGG	+	chr5_3:68683776-68683795	Msa0827440:CDS	45.0%
!	TCTTGGAGTCATTGGTGCTT+TGG	+	chr5_3:68683784-68683803	Msa0827440:CDS	45.0%
!	AGTCATTGGTGCTTTGGTGA+AGG	+	chr5_3:68683790-68683809	Msa0827440:CDS	45.0%
!	TCCACTATGCTTGGGTTGTA+TGG	+	chr5_3:68684580-68684599	Msa0827440:CDS	45.0%
	TCCATACAACCCAAGCATAG+TGG	-	chr5_3:68684584-68684603	None:intergenic	45.0%
	GGGTTGTATGGAAATCGACA+AGG	+	chr5_3:68684592-68684611	Msa0827440:CDS	45.0%
	CTCGTTTGTCTGAACATAGC+AGG	+	chr5_3:68684946-68684965	Msa0827440:CDS	45.0%
	TATAGGGGAGCCCAACAAAA+AGG	+	chr5_3:68685415-68685434	Msa0827440:intron	45.0%
!	GGTGGGTTCAAGGAATTCTA+AGG	+	chr5_3:68685677-68685696	Msa0827440:intron	45.0%
!!	TTATAAAGAATTAATAATTA+GGG	-	chr5_3:68683569-68683588	None:intergenic	5.0%
!!	ATTATAAAGAATTAATAATT+AGG	-	chr5_3:68683570-68683589	None:intergenic	5.0%
!!	TTTATTATTAAAAAATTCAA+TGG	+	chr5_3:68685334-68685353	Msa0827440:intron	5.0%
!!!	TTTATAAATTTTATTATGTT+TGG	+	chr5_3:68685561-68685580	Msa0827440:intron	5.0%
	CACCACTGCTCATATGATGG+TGG	+	chr5_3:68681488-68681507	Msa0827440:CDS	50.0%
	GTCCACCATCATATGAGCAG+TGG	-	chr5_3:68681493-68681512	None:intergenic	50.0%
	TGCTCTTCGTGTGCTTTCCA+AGG	+	chr5_3:68681560-68681579	Msa0827440:CDS	50.0%
	CGATGTTCTTGCGCTACTTC+TGG	+	chr5_3:68683217-68683236	Msa0827440:CDS	50.0%
!	TGGTTGAGGCTTGGTAGTCT+TGG	+	chr5_3:68683767-68683786	Msa0827440:CDS	50.0%
!	GTGTCACATAGGTGGGTTCA+AGG	+	chr5_3:68685667-68685686	Msa0827440:intron	50.0%
	AACTGGGTAGAAGCCCTGAG+AGG	-	chr5_3:68681465-68681484	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	68681405	68685953	68681405	ID=Msa0827440;Name=Msa0827440
chr5_3	mRNA	68681405	68685953	68681405	ID=Msa0827440-mRNA-1;Parent=Msa0827440;Name=Msa0827440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|1\|1\|9\|0\|308
chr5_3	exon	68681405	68681581	68681405	ID=Msa0827440-mRNA-1:exon:21577;Parent=Msa0827440-mRNA-1
chr5_3	exon	68682401	68682469	68682401	ID=Msa0827440-mRNA-1:exon:21578;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683149	68683238	68683149	ID=Msa0827440-mRNA-1:exon:21579;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683389	68683431	68683389	ID=Msa0827440-mRNA-1:exon:21580;Parent=Msa0827440-mRNA-1
chr5_3	exon	68683705	68683811	68683705	ID=Msa0827440-mRNA-1:exon:21581;Parent=Msa0827440-mRNA-1
chr5_3	exon	68684533	68684628	68684533	ID=Msa0827440-mRNA-1:exon:21582;Parent=Msa0827440-mRNA-1
chr5_3	exon	68684777	68684967	68684777	ID=Msa0827440-mRNA-1:exon:21583;Parent=Msa0827440-mRNA-1
chr5_3	exon	68685064	68685133	68685064	ID=Msa0827440-mRNA-1:exon:21584;Parent=Msa0827440-mRNA-1
chr5_3	exon	68685870	68685953	68685870	ID=Msa0827440-mRNA-1:exon:21585;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68681405	68681581	68681405	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68682401	68682469	68682401	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683149	68683238	68683149	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683389	68683431	68683389	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68683705	68683811	68683705	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68684533	68684628	68684533	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68684777	68684967	68684777	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68685064	68685133	68685064	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1
chr5_3	CDS	68685870	68685953	68685870	ID=Msa0827440-mRNA-1:cds;Parent=Msa0827440-mRNA-1

Gene Sequence

>Msa0827440

ATTGAAAATTCTTCTCCACGATCGATGTCAACAAAGAGTGATGCTTCATTTGTAGCTCCTCTCAGGGCTTCTACCCAGTTTAGCACCACTGCTCATATGATGGTGGACATGAAACGCCTTGTTATTGAACTTAGGAATCCAGATCTAAGAGCAAATGCTCTTCGTGTGCTTTCCAAGATGACGTCATTTCAGGAGCTTGCACCTTTATTGTGGAATTCTTTTGGTACTATTACAATACTTGTGCAAGAAATAATTTCAATATATCCTACTCTTTCACCACTAAATCTTACTCCAACACAATCAACTCGAATGTGCGATGTTCTTGCGCTACTTCTGTGTGTAGCATCTCACCCGGATACAAAGATGTCATTCCTCAATGCTAACATGCACTTATATTTATATCCATTCCTTCAAACGACAAGTAATTTAACACAATATGAGTGGTTGAGGCTTGGTAGTCTTGGAGTCATTGGTGCTTTGGTGAAGGTTAACACCAAAGAAGTCATGAGTTTCCTTCTTCCAAGTGAAATAATTCCACTATGCTTGGGTTGTATGGAAATCGACAAGGAGCCATCAAAATCTGTTGGAACATTTATCATTCATAAAATGTTGTTAGACGTTGATGGTTTGGCTTATGTTGGTGATACAGCAGAGCAATTTTTTACAGTAGCTCGAGTTTTTGACATGATGCTGTCAAGTTTTGAGAATCAACATTCACCTCGTTTGTTGAAGCTTATAATTCGATGCTATTCTCGTTTGTCTGAACATAGCAGGGCTCGCAGTGCATTAACAAGTTGTCTTCCAGACATTCTCAAAGATTCCAATTTCATCAATTGTCTTCATGAAGATTCAACAACTTGGAGGTGCATAAAAAAGTTGTATGAAAATCTTGGGATGAATCAAGCTTTTTTAGTACCTGGTGGATGA

Protein sequence

>Msa0827440

IENSSPRSMSTKSDASFVAPLRASTQFSTTAHMMVDMKRLVIELRNPDLRANALRVLSKMTSFQELAPLLWNSFGTITILVQEIISIYPTLSPLNLTPTQSTRMCDVLALLLCVASHPDTKMSFLNANMHLYLYPFLQTTSNLTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPSEIIPLCLGCMEIDKEPSKSVGTFIIHKMLLDVDGLAYVGDTAEQFFTVARVFDMMLSSFENQHSPRLLKLIIRCYSRLSEHSRARSALTSCLPDILKDSNFINCLHEDSTTWRCIKKLYENLGMNQAFLVPGG*