AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828460 MtrunA17_Chr7g0220341 61.453 179 58 3 8 178 59 234 1.25e-71 218
Msa0828460 MtrunA17_Chr5g0434911 66.456 158 48 3 8 165 53 205 6.42e-58 183
Msa0828460 MtrunA17_Chr5g0434931 59.116 181 61 5 8 179 67 243 3.58e-56 179
Msa0828460 MtrunA17_Chr7g0229131 57.616 151 53 2 5 155 1 140 2.22e-52 165
Msa0828460 MtrunA17_Chr7g0228991 56.216 185 66 6 8 181 61 241 1.21e-50 164
Msa0828460 MtrunA17_Chr5g0434831 64.336 143 46 2 8 146 39 180 2.24e-50 161
Msa0828460 MtrunA17_Chr8g0360111 55.080 187 59 4 2 180 51 220 3.57e-50 162
Msa0828460 MtrunA17_Chr5g0434841 65.035 143 45 2 8 146 52 193 9.94e-49 160
Msa0828460 MtrunA17_Chr7g0229101 54.396 182 61 3 5 177 1 169 2.63e-48 156
Msa0828460 MtrunA17_Chr5g0434901 76.991 113 24 2 10 122 7 117 1.97e-46 148
Msa0828460 MtrunA17_Chr5g0434891 61.600 125 41 3 41 165 1 118 5.60e-43 140
Msa0828460 MtrunA17_Chr7g0240821 69.412 85 25 1 7 90 32 116 8.91e-37 127
Msa0828460 MtrunA17_Chr4g0055981 64.444 90 31 1 8 97 87 175 5.82e-34 120
Msa0828460 MtrunA17_Chr4g0070641 72.603 73 20 0 8 80 44 116 5.75e-33 115
Msa0828460 MtrunA17_Chr8g0343831 73.973 73 19 0 8 80 40 112 1.66e-32 117
Msa0828460 MtrunA17_Chr4g0070611 72.603 73 20 0 8 80 44 116 1.70e-32 118
Msa0828460 MtrunA17_Chr4g0022931 53.398 103 48 0 4 106 41 143 1.97e-32 117
Msa0828460 MtrunA17_Chr8g0346561 69.863 73 22 0 8 80 44 116 2.41e-31 115
Msa0828460 MtrunA17_Chr7g0275911 68.493 73 23 0 8 80 44 116 3.04e-31 114
Msa0828460 MtrunA17_Chr5g0435101 53.846 104 46 1 8 109 43 146 1.15e-30 111
Msa0828460 MtrunA17_Chr5g0400821 54.545 99 44 1 4 102 41 138 1.15e-30 113
Msa0828460 MtrunA17_Chr1g0187761 56.842 95 41 0 4 98 40 134 2.02e-30 112
Msa0828460 MtrunA17_Chr4g0022911 56.989 93 36 1 4 92 41 133 2.30e-30 112
Msa0828460 MtrunA17_Chr4g0022901 64.474 76 27 0 4 79 41 116 5.05e-30 111
Msa0828460 MtrunA17_Chr3g0121241 67.123 73 24 0 8 80 74 146 5.50e-30 111
Msa0828460 MtrunA17_Chr7g0274581 63.014 73 27 0 8 80 44 116 1.21e-29 108
Msa0828460 MtrunA17_Chr4g0037141 64.384 73 26 0 8 80 44 116 1.37e-29 110
Msa0828460 MtrunA17_Chr3g0131121 65.753 73 25 0 8 80 44 116 4.01e-29 109
Msa0828460 MtrunA17_Chr2g0323351 55.056 89 40 0 4 92 40 128 5.10e-29 108
Msa0828460 MtrunA17_Chr5g0410961 54.839 93 39 1 8 97 44 136 6.27e-29 109
Msa0828460 MtrunA17_Chr7g0261281 47.826 115 54 1 8 122 44 152 7.32e-29 108
Msa0828460 MtrunA17_Chr4g0044421 62.338 77 29 0 4 80 40 116 2.91e-28 104
Msa0828460 MtrunA17_Chr6g0452271 65.753 73 25 0 8 80 44 116 3.59e-28 107
Msa0828460 MtrunA17_Chr4g0039971 49.074 108 52 1 4 108 41 148 4.10e-28 107
Msa0828460 MtrunA17_Chr1g0167691 61.644 73 28 0 8 80 44 116 1.01e-27 104
Msa0828460 MtrunA17_Chr1g0211161 58.108 74 31 0 7 80 44 117 2.26e-27 103
Msa0828460 MtrunA17_Chr1g0151941 61.644 73 28 0 8 80 45 117 2.59e-27 103
Msa0828460 MtrunA17_Chr4g0058631 46.364 110 48 1 8 106 44 153 3.59e-27 105
Msa0828460 MtrunA17_Chr1g0167661 49.000 100 51 0 8 107 44 143 4.44e-27 103
Msa0828460 MtrunA17_Chr3g0117091 59.459 74 30 0 7 80 43 116 4.95e-27 104
Msa0828460 MtrunA17_Chr3g0115821 58.442 77 32 0 4 80 40 116 5.10e-27 104
Msa0828460 MtrunA17_Chr1g0203411 58.750 80 33 0 8 87 44 123 5.75e-27 103
Msa0828460 MtrunA17_Chr7g0217221 63.889 72 26 0 9 80 45 116 6.85e-27 102
Msa0828460 MtrunA17_Chr4g0028311 61.039 77 30 0 4 80 41 117 6.90e-27 103
Msa0828460 MtrunA17_Chr5g0395281 58.442 77 32 0 4 80 40 116 8.06e-27 103
Msa0828460 MtrunA17_Chr2g0281071 60.274 73 29 0 8 80 45 117 8.43e-27 104
Msa0828460 MtrunA17_Chr2g0323411 61.644 73 28 0 8 80 44 116 8.95e-27 103
Msa0828460 MtrunA17_Chr3g0103281 59.459 74 30 0 8 81 44 117 1.14e-26 103
Msa0828460 MtrunA17_Chr4g0032401 51.648 91 33 1 1 80 31 121 1.19e-26 103
Msa0828460 MtrunA17_Chr4g0048511 60.274 73 29 0 8 80 45 117 1.23e-26 103
Msa0828460 MtrunA17_Chr2g0328771 57.534 73 31 0 8 80 52 124 1.41e-26 103
Msa0828460 MtrunA17_Chr3g0135311 62.500 72 27 0 9 80 46 117 1.50e-26 103
Msa0828460 MtrunA17_Chr7g0247131 56.757 74 32 0 7 80 9 82 2.12e-26 101
Msa0828460 MtrunA17_Chr7g0270891 58.904 73 30 0 8 80 44 116 2.19e-26 103
Msa0828460 MtrunA17_Chr1g0152011 55.952 84 36 1 9 92 46 128 2.93e-26 102
Msa0828460 MtrunA17_Chr7g0228891 52.128 94 42 1 7 97 43 136 3.50e-26 101
Msa0828460 MtrunA17_Chr8g0342481 58.108 74 31 0 7 80 44 117 4.38e-26 103
Msa0828460 MtrunA17_Chr2g0330041 59.459 74 30 0 7 80 43 116 4.38e-26 103
Msa0828460 MtrunA17_Chr4g0022891 59.459 74 30 0 4 77 40 113 4.49e-26 100
Msa0828460 MtrunA17_Chr1g0193371 58.108 74 31 0 7 80 43 116 4.56e-26 102
Msa0828460 MtrunA17_Chr3g0088461 57.534 73 31 0 8 80 54 126 4.96e-26 102
Msa0828460 MtrunA17_Chr8g0342521 55.405 74 33 0 7 80 43 116 5.71e-26 102
Msa0828460 MtrunA17_Chr8g0342541 56.757 74 32 0 7 80 43 116 6.14e-26 102
Msa0828460 MtrunA17_Chr8g0385321 54.545 77 35 0 4 80 40 116 8.51e-26 100
Msa0828460 MtrunA17_Chr4g0057031 60.811 74 29 0 7 80 43 116 8.65e-26 100
Msa0828460 MtrunA17_Chr4g0022881 57.333 75 32 0 4 78 40 114 1.12e-25 99.0
Msa0828460 MtrunA17_Chr8g0349261 57.143 77 33 0 4 80 42 118 1.28e-25 100
Msa0828460 MtrunA17_Chr8g0387421 57.534 73 31 0 8 80 44 116 1.81e-25 100
Msa0828460 MtrunA17_Chr4g0042671 51.579 95 43 1 8 99 44 138 1.94e-25 101
Msa0828460 MtrunA17_Chr4g0068061 57.534 73 31 0 8 80 44 116 1.97e-25 100
Msa0828460 MtrunA17_Chr1g0193801 56.164 73 32 0 8 80 44 116 2.68e-25 100
Msa0828460 MtrunA17_Chr2g0309911 56.757 74 32 0 7 80 42 115 4.88e-25 99.0
Msa0828460 MtrunA17_Chr7g0217741 59.459 74 30 0 8 81 44 117 5.15e-25 99.0
Msa0828460 MtrunA17_Chr1g0203441 50.000 88 40 1 8 95 45 128 6.99e-25 97.8
Msa0828460 MtrunA17_Chr6g0470971 36.250 160 82 4 8 166 46 186 1.01e-24 97.4
Msa0828460 MtrunA17_Chr2g0327821 40.179 112 66 1 2 113 32 142 1.03e-24 96.7
Msa0828460 MtrunA17_Chr3g0092401 61.644 73 28 0 8 80 45 117 1.26e-24 97.8
Msa0828460 MtrunA17_Chr3g0110351 59.459 74 30 0 7 80 43 116 2.18e-24 97.1
Msa0828460 MtrunA17_Chr7g0254411 60.274 73 29 0 8 80 44 116 3.02e-24 97.1
Msa0828460 MtrunA17_Chr5g0434571 59.459 74 30 0 7 80 79 152 3.51e-24 97.4
Msa0828460 MtrunA17_Chr4g0030881 53.659 82 36 1 5 84 41 122 3.75e-24 95.5
Msa0828460 MtrunA17_Chr4g0060721 52.439 82 39 0 8 89 45 126 4.15e-24 96.7
Msa0828460 MtrunA17_Chr6g0487491 56.098 82 28 1 8 81 45 126 4.45e-24 95.5
Msa0828460 MtrunA17_Chr7g0228231 48.889 90 46 0 2 91 40 129 4.97e-24 94.0
Msa0828460 MtrunA17_Chr7g0264641 57.534 73 31 0 8 80 45 117 5.93e-24 95.1
Msa0828460 MtrunA17_Chr7g0271241 62.687 67 25 0 7 73 43 109 7.20e-24 96.7
Msa0828460 MtrunA17_Chr4g0072751 63.636 66 24 0 9 74 46 111 8.83e-24 96.3
Msa0828460 MtrunA17_Chr2g0327351 59.155 71 29 0 4 74 41 111 1.63e-23 95.1
Msa0828460 MtrunA17_Chr1g0180391 49.398 83 42 0 4 86 47 129 2.62e-23 92.8
Msa0828460 MtrunA17_Chr6g0453471 58.904 73 30 0 8 80 44 116 2.63e-23 95.1
Msa0828460 MtrunA17_Chr1g0186061 53.846 78 36 0 2 79 46 123 3.76e-23 92.8
Msa0828460 MtrunA17_Chr4g0054391 52.941 85 38 1 9 93 46 128 4.35e-23 93.2
Msa0828460 MtrunA17_Chr5g0397231 58.209 67 28 0 8 74 44 110 4.74e-23 94.0
Msa0828460 MtrunA17_Chr6g0453211 63.636 66 24 0 9 74 45 110 5.30e-23 93.6
Msa0828460 MtrunA17_Chr1g0209661 55.128 78 35 0 2 79 53 130 6.18e-23 93.2
Msa0828460 MtrunA17_Chr1g0194951 53.425 73 34 0 8 80 44 116 1.04e-22 93.6
Msa0828460 MtrunA17_Chr6g0450101 53.165 79 37 0 2 80 40 118 1.34e-22 90.5
Msa0828460 MtrunA17_Chr1g0168661 53.846 78 36 0 2 79 47 124 1.37e-22 91.3
Msa0828460 MtrunA17_Chr3g0080861 52.778 72 34 0 8 79 69 140 2.49e-22 93.6
Msa0828460 MtrunA17_Chr1g0194301 53.846 78 36 0 2 79 59 136 2.58e-22 90.9
Msa0828460 MtrunA17_Chr2g0311221 54.930 71 32 0 4 74 42 112 4.20e-22 91.3
Msa0828460 MtrunA17_Chr5g0417821 54.795 73 33 0 8 80 39 111 1.45e-21 89.4
Msa0828460 MtrunA17_Chr1g0194291 55.128 78 35 0 2 79 47 124 1.47e-21 89.0
Msa0828460 MtrunA17_Chr3g0093811 50.649 77 38 0 5 81 11 87 1.73e-21 88.6
Msa0828460 MtrunA17_Chr3g0099131 48.611 72 37 0 8 79 73 144 2.16e-21 90.9
Msa0828460 MtrunA17_Chr4g0068921 49.485 97 48 1 2 98 50 145 1.09e-20 85.1
Msa0828460 MtrunA17_Chr8g0354661 47.436 78 41 0 2 79 63 140 1.10e-20 88.6
Msa0828460 MtrunA17_Chr5g0434871 81.818 44 8 0 38 81 2 45 1.52e-20 81.3
Msa0828460 MtrunA17_Chr1g0154031 47.436 78 41 0 2 79 102 179 3.87e-20 86.7
Msa0828460 MtrunA17_Chr1g0192411 50.685 73 36 0 10 82 46 118 4.20e-20 86.7
Msa0828460 MtrunA17_Chr2g0293911 55.844 77 34 0 2 78 50 126 3.23e-19 83.6
Msa0828460 MtrunA17_Chr7g0269831 54.795 73 33 0 8 80 44 116 1.05e-18 82.4
Msa0828460 MtrunA17_Chr5g0417621 47.826 69 36 0 12 80 167 235 2.59e-18 81.6
Msa0828460 MtrunA17_Chr6g0480581 53.968 63 29 0 12 74 37 99 4.00e-18 79.3
Msa0828460 MtrunA17_Chr2g0322521 47.436 78 41 0 2 79 55 132 1.12e-17 79.7
Msa0828460 MtrunA17_Chr3g0139671 46.667 75 38 1 6 80 114 186 2.40e-17 79.3
Msa0828460 MtrunA17_Chr4g0042501 45.588 68 37 0 12 79 138 205 2.72e-17 79.0
Msa0828460 MtrunA17_Chr1g0157731 46.667 75 38 1 6 80 120 192 4.08e-17 78.6
Msa0828460 MtrunA17_Chr5g0440781 44.872 78 40 2 8 82 44 121 4.08e-17 75.5
Msa0828460 MtrunA17_Chr6g0460661 47.619 63 33 0 12 74 49 111 6.59e-17 74.3
Msa0828460 MtrunA17_Chr4g0008551 43.038 79 44 1 2 79 60 138 7.86e-17 77.0
Msa0828460 MtrunA17_Chr5g0440761 44.872 78 40 2 8 82 44 121 1.42e-16 75.5
Msa0828460 MtrunA17_Chr5g0441141 44.872 78 40 2 8 82 44 121 1.74e-16 75.5
Msa0828460 MtrunA17_Chr7g0228531 49.315 73 36 1 12 84 253 324 2.42e-16 76.3
Msa0828460 MtrunA17_Chr3g0117511 35.714 98 59 1 12 109 216 309 3.41e-16 75.9
Msa0828460 MtrunA17_Chr5g0401731 34.286 105 69 0 12 116 48 152 4.06e-16 74.7
Msa0828460 MtrunA17_Chr7g0228401 46.970 66 35 0 12 77 312 377 5.21e-16 75.1
Msa0828460 MtrunA17_Chr7g0254261 29.508 183 105 4 6 181 118 283 8.44e-16 74.3
Msa0828460 MtrunA17_Chr5g0429661 31.618 136 73 3 12 147 155 270 9.09e-16 73.9
Msa0828460 MtrunA17_Chr4g0053431 42.105 76 44 0 4 79 30 105 1.21e-15 72.8
Msa0828460 MtrunA17_Chr6g0454921 45.070 71 39 0 11 81 47 117 1.87e-15 71.2
Msa0828460 MtrunA17_Chr8g0334881 34.078 179 87 8 10 173 44 206 2.15e-15 72.8
Msa0828460 MtrunA17_Chr3g0125801 46.753 77 38 1 12 88 49 122 2.28e-15 72.4
Msa0828460 MtrunA17_Chr4g0058991 41.558 77 43 1 5 81 237 311 4.60e-15 72.4
Msa0828460 MtrunA17_Chr1g0177901 41.772 79 44 1 1 77 14 92 5.56e-15 70.1
Msa0828460 MtrunA17_Chr5g0434861 52.778 72 25 2 118 181 10 80 6.01e-15 68.2
Msa0828460 MtrunA17_Chr3g0133601 43.662 71 40 0 11 81 69 139 7.52e-15 70.1
Msa0828460 MtrunA17_Chr6g0460671 45.588 68 37 0 12 79 132 199 1.02e-14 71.2
Msa0828460 MtrunA17_Chr7g0238631 44.928 69 38 0 12 80 146 214 2.21e-14 70.5
Msa0828460 MtrunA17_Chr8g0342531 57.447 47 20 0 7 53 43 89 3.00e-14 67.4
Msa0828460 MtrunA17_Chr2g0323321 52.830 53 25 0 4 56 39 91 7.79e-14 64.7
Msa0828460 MtrunA17_Chr8g0342461 57.447 47 20 0 7 53 44 90 7.95e-14 65.5
Msa0828460 MtrunA17_Chr2g0322831 63.158 38 14 0 35 72 35 72 9.03e-14 63.9
Msa0828460 MtrunA17_Chr8g0342471 57.447 47 20 0 7 53 44 90 1.01e-13 65.5
Msa0828460 MtrunA17_Chr5g0441131 40.278 72 42 1 8 78 41 112 1.18e-13 66.2
Msa0828460 MtrunA17_Chr5g0395221 57.778 45 19 0 8 52 44 88 1.70e-13 63.2
Msa0828460 MtrunA17_Chr7g0238651 46.154 65 35 0 10 74 41 105 1.93e-13 67.4
Msa0828460 MtrunA17_Chr5g0437321 44.615 65 36 0 12 76 52 116 4.29e-13 66.2
Msa0828460 MtrunA17_Chr4g0013361 44.444 72 38 2 10 80 44 114 4.82e-13 65.9
Msa0828460 MtrunA17_Chr8g0342511 59.091 44 18 0 7 50 43 86 5.98e-13 62.0
Msa0828460 MtrunA17_Chr7g0233061 30.303 99 69 0 12 110 211 309 4.37e-12 63.5
Msa0828460 MtrunA17_Chr3g0099141 48.000 50 26 0 9 58 73 122 5.96e-12 60.5
Msa0828460 MtrunA17_Chr4g0042611 60.000 45 18 0 8 52 44 88 7.28e-12 58.9
Msa0828460 MtrunA17_Chr2g0294811 46.296 54 29 0 3 56 39 92 2.06e-11 58.5
Msa0828460 MtrunA17_Chr7g0228481 42.424 66 37 1 12 77 253 317 8.51e-11 60.1
Msa0828460 MtrunA17_Chr5g0397841 42.623 61 35 0 12 72 143 203 8.66e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828460 AT5G35550.2 59.341 91 37 0 3 93 44 134 1.22e-33 120
Msa0828460 AT5G14750.1 60.227 88 35 0 2 89 42 129 2.60e-33 118
Msa0828460 AT1G66370.1 73.611 72 19 0 8 79 40 111 4.40e-33 119
Msa0828460 AT5G40330.1 65.432 81 28 0 2 82 38 118 7.08e-33 117
Msa0828460 AT3G27920.1 65.000 80 28 0 2 81 40 119 2.35e-32 116
Msa0828460 AT3G13540.1 69.863 73 22 0 8 80 55 127 2.82e-32 117
Msa0828460 AT5G35550.1 61.628 86 33 0 8 93 46 131 3.08e-32 117
Msa0828460 AT5G14750.3 64.103 78 28 0 12 89 18 95 3.54e-32 114
Msa0828460 AT4G38620.1 62.338 77 29 0 4 80 40 116 7.70e-30 111
Msa0828460 AT2G16720.1 62.338 77 29 0 4 80 40 116 1.72e-29 110
Msa0828460 AT1G66380.3 69.737 76 23 0 4 79 3 78 2.00e-29 105
Msa0828460 AT1G22640.1 61.039 77 30 0 4 80 40 116 2.02e-29 109
Msa0828460 AT3G23250.1 64.384 73 26 0 8 80 44 116 3.63e-29 109
Msa0828460 AT4G09460.1 63.014 73 27 0 8 80 44 116 4.00e-29 108
Msa0828460 AT1G06180.1 55.102 98 43 1 4 101 40 136 5.80e-29 108
Msa0828460 AT1G66380.1 75.000 72 18 0 8 79 40 111 6.42e-29 105
Msa0828460 AT5G52600.1 68.056 72 23 0 8 79 44 115 9.11e-29 106
Msa0828460 AT5G16770.4 67.123 73 24 0 8 80 44 116 1.16e-28 108
Msa0828460 AT5G16770.3 67.123 73 24 0 8 80 44 116 1.16e-28 108
Msa0828460 AT4G17785.2 62.338 77 29 0 4 80 41 117 1.30e-28 109
Msa0828460 AT4G17785.1 62.338 77 29 0 4 80 41 117 1.38e-28 109
Msa0828460 AT5G16770.1 67.123 73 24 0 8 80 44 116 1.49e-28 108
Msa0828460 AT5G16770.2 67.123 73 24 0 8 80 44 116 1.49e-28 108
Msa0828460 AT4G34990.1 63.014 73 27 0 8 80 44 116 1.74e-28 107
Msa0828460 AT1G56650.1 75.000 72 18 0 8 79 40 111 3.73e-28 106
Msa0828460 AT5G12870.1 58.904 73 30 0 8 80 50 122 4.28e-28 106
Msa0828460 AT1G66390.1 75.000 72 18 0 8 79 40 111 7.21e-28 105
Msa0828460 AT3G02940.2 64.384 73 26 0 8 80 44 116 1.39e-27 105
Msa0828460 AT5G65790.1 53.125 96 41 1 9 104 46 137 1.54e-27 107
Msa0828460 AT3G02940.1 64.384 73 26 0 8 80 44 116 1.86e-27 105
Msa0828460 AT3G02940.3 64.384 73 26 0 8 80 44 116 1.86e-27 105
Msa0828460 AT5G56110.1 62.162 74 28 0 8 81 44 117 2.21e-27 105
Msa0828460 AT4G01680.3 60.000 75 30 0 8 82 44 118 3.28e-27 103
Msa0828460 AT4G05100.1 60.274 73 29 0 8 80 45 117 4.27e-27 105
Msa0828460 AT5G10280.1 59.740 77 31 0 4 80 40 116 4.36e-27 105
Msa0828460 AT5G65230.1 58.442 77 32 0 4 80 40 116 4.69e-27 104
Msa0828460 AT4G21440.1 61.644 73 28 0 8 80 44 116 5.02e-27 105
Msa0828460 AT3G61250.1 59.740 77 31 0 4 80 40 116 5.04e-27 104
Msa0828460 AT1G16490.1 56.579 76 33 0 8 83 46 121 5.67e-27 103
Msa0828460 AT5G26660.1 60.811 74 29 0 7 80 43 116 5.91e-27 105
Msa0828460 AT3G49690.1 57.831 83 34 1 9 91 46 127 1.03e-26 103
Msa0828460 AT4G01680.1 60.000 75 30 0 8 82 44 118 1.09e-26 103
Msa0828460 AT1G57560.2 58.108 74 31 0 7 80 43 116 1.15e-26 102
Msa0828460 AT4G28110.1 58.108 74 31 0 8 81 44 117 1.20e-26 102
Msa0828460 AT1G57560.1 58.108 74 31 0 7 80 43 116 1.22e-26 103
Msa0828460 AT2G31180.1 62.162 74 28 0 8 81 44 117 1.43e-26 102
Msa0828460 AT1G35515.1 56.164 73 32 0 8 80 44 116 1.55e-26 100
Msa0828460 AT5G23000.1 64.384 73 26 0 8 80 45 117 2.18e-26 103
Msa0828460 AT4G12350.1 59.740 77 31 0 4 80 40 116 2.23e-26 102
Msa0828460 AT4G01680.2 59.211 76 31 0 7 82 55 130 2.48e-26 103
Msa0828460 AT5G49330.1 60.274 73 29 0 8 80 44 116 2.55e-26 103
Msa0828460 AT1G09540.1 56.757 74 32 0 7 80 43 116 2.67e-26 103
Msa0828460 AT5G62320.1 60.811 74 29 0 7 80 51 124 2.98e-26 101
Msa0828460 AT5G26660.2 59.722 72 29 0 9 80 14 85 3.70e-26 102
Msa0828460 AT5G57620.1 62.500 72 27 0 9 80 46 117 4.87e-26 102
Msa0828460 AT3G13890.2 58.904 73 30 0 8 80 44 116 7.02e-26 102
Msa0828460 AT2G36890.1 62.338 77 29 0 4 80 41 117 7.70e-26 101
Msa0828460 AT2G36890.2 62.338 77 29 0 4 80 82 158 9.29e-26 101
Msa0828460 AT3G62610.1 60.274 73 29 0 8 80 44 116 9.33e-26 101
Msa0828460 AT1G79180.2 54.430 79 36 0 3 81 74 152 1.47e-25 100
Msa0828460 AT3G08500.1 58.904 73 30 0 8 80 62 134 1.50e-25 101
Msa0828460 AT5G54230.1 60.274 73 29 0 8 80 44 116 1.64e-25 100
Msa0828460 AT5G60890.1 57.143 77 33 0 4 80 40 116 2.08e-25 100
Msa0828460 AT1G79180.1 56.757 74 32 0 8 81 46 119 2.34e-25 99.8
Msa0828460 AT1G74650.1 59.740 77 31 0 8 84 44 120 2.42e-25 100
Msa0828460 AT3G53200.2 37.662 154 71 2 9 152 9 147 2.84e-25 97.4
Msa0828460 AT1G18570.1 61.644 73 28 0 8 80 45 117 3.74e-25 100
Msa0828460 AT3G12720.1 56.757 74 32 0 7 80 53 126 3.84e-25 99.4
Msa0828460 AT3G53200.1 37.736 159 74 3 4 152 37 180 3.87e-25 98.2
Msa0828460 AT3G01530.1 51.190 84 41 0 2 85 51 134 4.08e-25 97.1
Msa0828460 AT2G47460.1 57.534 73 31 0 8 80 44 116 4.38e-25 100
Msa0828460 AT4G22680.1 57.143 77 33 0 4 80 40 116 4.51e-25 98.6
Msa0828460 AT3G01140.2 61.644 73 28 0 8 80 44 116 6.94e-25 99.4
Msa0828460 AT3G47600.2 62.500 72 27 0 9 80 39 110 7.71e-25 99.0
Msa0828460 AT3G47600.1 61.644 73 28 0 8 80 44 116 8.05e-25 99.0
Msa0828460 AT3G28910.1 62.500 72 27 0 9 80 45 116 8.86e-25 99.0
Msa0828460 AT1G74430.1 58.108 74 31 0 8 81 44 117 9.28e-25 97.8
Msa0828460 AT4G37780.1 56.962 79 33 1 9 87 46 123 1.11e-24 98.2
Msa0828460 AT3G12820.1 55.128 78 35 0 4 81 42 119 1.13e-24 96.7
Msa0828460 AT3G01140.1 61.644 73 28 0 8 80 87 159 1.23e-24 99.4
Msa0828460 AT5G62470.2 56.790 81 35 0 9 89 45 125 1.35e-24 98.6
Msa0828460 AT3G48920.1 48.235 85 44 0 8 92 50 134 1.37e-24 97.1
Msa0828460 AT3G13890.1 55.263 76 34 0 5 80 50 125 1.47e-24 99.0
Msa0828460 AT5G15310.4 59.459 74 30 0 8 81 44 117 1.80e-24 96.3
Msa0828460 AT3G46130.3 53.165 79 37 0 6 84 7 85 1.92e-24 95.9
Msa0828460 AT5G15310.1 59.459 74 30 0 8 81 44 117 1.93e-24 97.8
Msa0828460 AT1G56160.1 47.368 95 50 0 4 98 42 136 1.99e-24 97.4
Msa0828460 AT2G47190.1 55.128 78 35 0 2 79 46 123 2.13e-24 96.7
Msa0828460 AT5G59780.3 49.398 83 42 0 2 84 34 116 2.39e-24 95.9
Msa0828460 AT5G15310.2 59.459 74 30 0 8 81 44 117 2.46e-24 97.4
Msa0828460 AT3G46130.1 49.398 83 42 0 2 84 35 117 3.31e-24 95.9
Msa0828460 AT5G14750.4 60.294 68 27 0 22 89 1 68 4.38e-24 92.8
Msa0828460 AT5G14750.2 60.294 68 27 0 22 89 1 68 4.38e-24 92.8
Msa0828460 AT3G30210.1 46.875 96 50 1 8 102 59 154 8.41e-24 95.5
Msa0828460 AT1G63910.1 54.795 73 33 0 8 80 44 116 8.53e-24 96.7
Msa0828460 AT1G66230.1 56.757 74 32 0 7 80 43 116 1.14e-23 95.1
Msa0828460 AT1G34670.1 55.844 77 34 0 4 80 40 116 1.20e-23 96.3
Msa0828460 AT1G08810.1 43.089 123 56 1 8 116 44 166 1.68e-23 94.7
Msa0828460 AT1G48000.1 51.546 97 46 1 2 98 58 153 1.87e-23 93.6
Msa0828460 AT4G25560.1 55.556 72 32 0 8 79 42 113 2.01e-23 94.4
Msa0828460 AT5G59780.2 53.947 76 35 0 9 84 20 95 2.14e-23 92.8
Msa0828460 AT5G16600.1 55.844 77 34 0 4 80 40 116 2.60e-23 94.7
Msa0828460 AT5G62470.1 56.410 78 34 0 12 89 47 124 2.82e-23 95.1
Msa0828460 AT3G46130.4 53.947 76 35 0 9 84 20 95 3.13e-23 92.8
Msa0828460 AT5G07700.1 57.534 73 31 0 8 80 44 116 3.83e-23 94.7
Msa0828460 AT5G07700.2 57.534 73 31 0 8 80 44 116 3.83e-23 94.7
Msa0828460 AT5G14340.1 55.405 74 33 0 7 80 55 128 4.09e-23 93.6
Msa0828460 AT3G28470.1 59.701 67 27 0 8 74 44 110 4.49e-23 94.0
Msa0828460 AT4G13480.1 48.515 101 51 1 2 102 32 131 6.06e-23 92.8
Msa0828460 AT5G55020.1 56.944 72 31 0 9 80 59 130 8.29e-23 95.1
Msa0828460 AT5G61420.2 56.164 73 32 0 8 80 44 116 8.66e-23 94.0
Msa0828460 AT3G24310.1 55.128 78 35 0 2 79 44 121 9.54e-23 92.4
Msa0828460 AT1G74080.1 54.054 74 34 0 8 81 44 117 1.05e-22 93.2
Msa0828460 AT3G12820.2 54.286 70 32 0 12 81 2 71 1.24e-22 90.5
Msa0828460 AT1G68320.1 53.846 78 36 0 2 79 45 122 1.31e-22 92.4
Msa0828460 AT1G18710.1 54.054 74 34 0 8 81 44 117 1.37e-22 92.0
Msa0828460 AT3G27810.1 53.165 79 37 0 2 80 46 124 1.84e-22 90.9
Msa0828460 AT5G40350.1 45.455 99 54 0 2 100 43 141 2.22e-22 90.1
Msa0828460 AT5G07690.1 56.164 73 32 0 8 80 44 116 2.59e-22 92.4
Msa0828460 AT1G25340.1 53.846 78 36 0 2 79 44 121 2.60e-22 91.7
Msa0828460 AT5G52260.1 57.534 73 31 0 7 79 43 115 4.98e-22 90.5
Msa0828460 AT4G26930.1 55.072 69 31 0 10 78 53 121 6.63e-22 92.0
Msa0828460 AT5G40350.2 45.652 92 50 0 9 100 5 96 6.66e-22 87.8
Msa0828460 AT3G27810.2 54.167 72 33 0 9 80 4 75 7.01e-22 87.8
Msa0828460 AT2G32460.1 52.778 72 34 0 8 79 50 121 8.79e-22 92.0
Msa0828460 AT2G32460.2 52.778 72 34 0 8 79 38 109 9.71e-22 92.0
Msa0828460 AT2G26960.1 42.308 104 57 2 8 109 52 154 2.08e-21 90.9
Msa0828460 AT1G71030.2 54.412 68 31 0 14 81 4 71 8.29e-21 85.1
Msa0828460 AT1G71030.1 54.412 68 31 0 14 81 18 85 1.02e-20 85.5
Msa0828460 AT5G06100.1 48.571 70 36 0 10 79 66 135 1.86e-20 88.2
Msa0828460 AT5G06100.5 48.571 70 36 0 10 79 66 135 2.34e-20 88.2
Msa0828460 AT5G06100.2 48.571 70 36 0 10 79 66 135 2.34e-20 88.2
Msa0828460 AT5G06100.3 48.571 70 36 0 10 79 66 135 2.34e-20 88.2
Msa0828460 AT5G06100.4 48.571 70 36 0 10 79 66 135 2.34e-20 88.2
Msa0828460 AT1G69560.2 39.048 105 60 1 12 116 156 256 2.36e-20 87.0
Msa0828460 AT1G69560.1 39.048 105 60 1 12 116 140 240 2.48e-20 87.0
Msa0828460 AT3G23250.2 59.322 59 24 0 22 80 1 59 4.42e-20 84.3
Msa0828460 AT1G22640.3 57.627 59 25 0 22 80 1 59 5.33e-20 83.6
Msa0828460 AT3G06490.1 49.485 97 48 1 2 98 45 140 6.22e-20 85.9
Msa0828460 AT1G25340.2 56.923 65 28 0 15 79 52 116 9.53e-20 84.7
Msa0828460 AT1G25340.3 56.923 65 28 0 15 79 52 116 1.35e-19 84.7
Msa0828460 AT3G11440.2 44.286 70 39 0 10 79 75 144 2.02e-19 85.5
Msa0828460 AT3G11440.3 44.286 70 39 0 10 79 75 144 2.32e-19 85.5
Msa0828460 AT3G11440.4 44.286 70 39 0 10 79 75 144 2.32e-19 85.5
Msa0828460 AT3G11440.1 44.286 70 39 0 10 79 75 144 2.32e-19 85.5
Msa0828460 AT5G49620.1 48.454 97 49 1 2 98 52 147 8.11e-19 82.4
Msa0828460 AT1G26780.1 50.000 68 34 0 12 79 131 198 1.95e-18 80.9
Msa0828460 AT1G26780.2 50.000 68 34 0 12 79 131 198 2.12e-18 82.0
Msa0828460 AT3G09230.1 51.429 70 34 0 11 80 87 156 7.42e-18 80.5
Msa0828460 AT2G39880.1 49.296 71 36 0 11 81 82 152 7.45e-18 80.5
Msa0828460 AT5G11510.3 47.826 69 36 0 12 80 114 182 7.72e-18 81.3
Msa0828460 AT5G11510.1 47.826 69 36 0 12 80 114 182 7.72e-18 81.3
Msa0828460 AT5G11510.4 47.826 69 36 0 12 80 114 182 7.72e-18 81.3
Msa0828460 AT5G11510.5 47.826 69 36 0 12 80 114 182 9.37e-18 80.9
Msa0828460 AT5G11510.2 47.826 69 36 0 12 80 114 182 9.70e-18 80.9
Msa0828460 AT1G17950.1 50.000 68 34 0 12 79 38 105 1.67e-17 78.2
Msa0828460 AT1G18960.1 46.575 73 37 1 9 81 40 110 2.47e-17 78.6
Msa0828460 AT5G17800.1 38.636 88 51 1 10 97 124 208 1.09e-16 76.6
Msa0828460 AT4G33450.1 45.946 74 38 1 6 79 48 119 3.16e-16 74.7
Msa0828460 AT4G18770.1 40.741 81 46 1 6 84 242 322 3.27e-16 76.3
Msa0828460 AT3G55730.1 44.444 81 44 1 2 81 78 158 4.37e-16 75.5
Msa0828460 AT4G32730.5 44.000 75 40 1 6 80 116 188 6.00e-16 75.5
Msa0828460 AT4G32730.4 44.000 75 40 1 6 80 116 188 6.00e-16 75.5
Msa0828460 AT4G32730.3 44.000 75 40 1 6 80 116 188 6.00e-16 75.5
Msa0828460 AT4G32730.2 44.000 75 40 1 6 80 116 188 6.00e-16 75.5
Msa0828460 AT4G32730.1 44.000 75 40 1 6 80 116 188 7.53e-16 75.5
Msa0828460 AT4G37260.1 40.000 75 45 0 11 85 45 119 1.12e-15 73.9
Msa0828460 AT1G73410.1 50.000 68 34 0 12 79 39 106 1.60e-15 72.4
Msa0828460 AT1G73410.2 50.000 68 34 0 12 79 39 106 2.34e-15 71.2
Msa0828460 AT5G49620.2 42.342 111 49 2 2 98 52 161 2.81e-15 72.8
Msa0828460 AT3G27785.1 41.026 78 46 0 12 89 222 299 2.93e-15 73.6
Msa0828460 AT5G40360.1 32.292 96 65 0 12 107 191 286 3.28e-15 72.8
Msa0828460 AT2G37630.1 43.529 85 42 1 10 94 38 116 3.79e-15 72.8
Msa0828460 AT2G25230.1 43.284 67 38 0 12 78 59 125 4.10e-15 71.2
Msa0828460 AT2G26950.1 41.538 65 38 0 8 72 48 112 4.14e-15 72.8
Msa0828460 AT3G60460.1 49.315 73 35 2 10 81 45 116 4.16e-15 72.0
Msa0828460 AT5G02320.1 43.056 72 41 0 11 82 159 230 5.22e-15 72.8
Msa0828460 AT5G02320.2 43.056 72 41 0 11 82 159 230 5.22e-15 72.8
Msa0828460 AT5G02320.3 43.056 72 41 0 11 82 99 170 6.80e-15 72.4
Msa0828460 AT5G40430.1 39.726 73 42 1 6 78 82 152 1.02e-14 70.5
Msa0828460 AT3G29020.2 40.580 69 41 0 12 80 100 168 1.11e-14 71.2
Msa0828460 AT3G29020.1 40.580 69 41 0 12 80 98 166 1.19e-14 70.1
Msa0828460 AT3G09370.1 45.588 68 37 0 12 79 163 230 1.44e-14 71.6
Msa0828460 AT3G09370.3 45.588 68 37 0 12 79 176 243 1.45e-14 71.6
Msa0828460 AT3G09370.2 45.588 68 37 0 12 79 168 235 1.52e-14 71.2
Msa0828460 AT2G23290.1 43.662 71 40 0 11 81 45 115 2.22e-14 70.1
Msa0828460 AT5G67300.1 42.254 71 41 0 11 81 38 108 8.22e-14 68.6
Msa0828460 AT3G50060.1 30.435 115 71 2 11 116 38 152 1.01e-13 68.2
Msa0828460 AT5G58850.1 35.065 77 50 0 12 88 138 214 5.48e-13 66.6
Msa0828460 AT5G11050.1 38.235 68 42 0 12 79 138 205 7.44e-13 66.2
Msa0828460 AT5G39700.1 45.763 59 32 0 16 74 93 151 1.62e-12 63.5
Msa0828460 AT1G66380.2 65.306 49 17 0 8 56 40 88 2.52e-12 61.2
Msa0828460 AT4G00540.2 40.580 69 41 0 12 80 139 207 7.99e-12 63.5
Msa0828460 AT4G00540.1 40.580 69 41 0 12 80 137 205 9.05e-12 63.2
Msa0828460 AT1G74650.3 61.364 44 17 0 41 84 1 44 1.46e-11 62.0
Msa0828460 AT4G25560.2 52.174 46 22 0 34 79 2 47 1.82e-11 61.2
Msa0828460 AT5G59780.1 49.020 51 26 0 34 84 1 51 7.79e-11 58.5

Find 32 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGGTTACACAATCTTCT+AGG 0.262250 5_4:-1011371 Msa0828460:CDS
ATGCTTTCTCTGTTGATATT+GGG 0.272311 5_4:+1011419 None:intergenic
GATGCTTTCTCTGTTGATAT+TGG 0.275758 5_4:+1011418 None:intergenic
TAATGCCTCATTAGGTACTA+TGG 0.298311 5_4:-1010905 Msa0828460:CDS
ACTATGGTTTCAAATCAAAT+TGG 0.342867 5_4:-1010889 Msa0828460:CDS
TAATGAGGCATTAGAATCTC+TGG 0.345408 5_4:+1010915 None:intergenic
TTGATTGCTGCAAGGCTTCC+CGG 0.354776 5_4:-1011171 Msa0828460:CDS
CACATCATTCGCTGTTCTAC+CGG 0.355005 5_4:+1011152 None:intergenic
AGAGATTCTAATGCCTCATT+AGG 0.396204 5_4:-1010913 Msa0828460:CDS
GACGGATAATTTGAGGAACT+TGG 0.431079 5_4:-1010827 Msa0828460:CDS
AAGTATTTGTTACACTTGGC+AGG 0.457899 5_4:-1011494 Msa0828460:CDS
TCTTTATTTGAAGCCAGTAC+TGG 0.482975 5_4:+1010949 None:intergenic
ACGGATAATTTGAGGAACTT+GGG 0.485121 5_4:-1010826 Msa0828460:CDS
ACTACCATGTGCAATGTTGA+CGG 0.489875 5_4:-1010845 Msa0828460:CDS
ATGAAGCTGATATGATCATA+AGG 0.505340 5_4:-1011388 Msa0828460:CDS
ACTATTGGCACACAAATTTG+CGG 0.532907 5_4:-1011125 Msa0828460:CDS
CGGATAATTTGAGGAACTTG+GGG 0.543823 5_4:-1010825 Msa0828460:CDS
GTACTGGCTTCAAATAAAGA+TGG 0.549455 5_4:-1010946 Msa0828460:CDS
TAAGGTTACACAATCTTCTA+GGG 0.564698 5_4:-1011370 Msa0828460:CDS
ACATCATTCGCTGTTCTACC+GGG 0.568549 5_4:+1011153 None:intergenic
TGAAACCATAGTACCTAATG+AGG 0.571006 5_4:+1010900 None:intergenic
GTAAAAGTATTTGTTACACT+TGG 0.578266 5_4:-1011498 Msa0828460:intron
CAATGTTGACGGATAATTTG+AGG 0.581889 5_4:-1010834 Msa0828460:CDS
AATGAGGCATTAGAATCTCT+GGG 0.582303 5_4:+1010916 None:intergenic
GAAGTTATTAAGCCTCAACC+TGG 0.585904 5_4:-1011031 Msa0828460:CDS
GATCATATCAGCTTCATCCT+CGG 0.598570 5_4:+1011394 None:intergenic
GATGGTCATTGATTGCTGCA+AGG 0.608516 5_4:-1011179 Msa0828460:CDS
TACACAATCTTCTAGGGCAT+AGG 0.644026 5_4:-1011364 Msa0828460:intron
TCAGAGAAATGAAATCACAA+AGG 0.682062 5_4:+1010783 None:intergenic
TTATCCGTCAACATTGCACA+TGG 0.697304 5_4:+1010841 None:intergenic
GGATAATTTGAGGAACTTGG+GGG 0.721959 5_4:-1010824 Msa0828460:CDS
CAACAGAGAAAGCATCACCG+AGG 0.778164 5_4:-1011411 Msa0828460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTATATATTGTGTATT+TGG - chr5_4:1010796-1010815 Msa0828460:CDS 15.0%
!! TATTCTATATATTGTGTATT+TGG - chr5_4:1010796-1010815 Msa0828460:CDS 15.0%
!!! GTAAAAGTATTTGTTACACT+TGG - chr5_4:1010966-1010985 Msa0828460:CDS 25.0%
!! AACAAATTTGAATTTTGCCT+CGG + chr5_4:1011133-1011152 None:intergenic 25.0%
! ACATTTACATGTGATTTAGA+TGG - chr5_4:1011267-1011286 Msa0828460:intron 25.0%
! GAAAGAAAAAGAGAAACATA+AGG - chr5_4:1011391-1011410 Msa0828460:CDS 25.0%
!! AATGAGTTGAAAAAAATTCC+AGG + chr5_4:1011454-1011473 None:intergenic 25.0%
! ACTATGGTTTCAAATCAAAT+TGG - chr5_4:1011575-1011594 Msa0828460:intron 25.0%
!!! GTAAAAGTATTTGTTACACT+TGG - chr5_4:1010966-1010985 Msa0828460:CDS 25.0%
!! AACAAATTTGAATTTTGCCT+CGG + chr5_4:1011133-1011152 None:intergenic 25.0%
! ACATTTACATGTGATTTAGA+TGG - chr5_4:1011267-1011286 Msa0828460:intron 25.0%
! GAAAGAAAAAGAGAAACATA+AGG - chr5_4:1011391-1011410 Msa0828460:CDS 25.0%
!! AATGAGTTGAAAAAAATTCC+AGG + chr5_4:1011454-1011473 None:intergenic 25.0%
! ACTATGGTTTCAAATCAAAT+TGG - chr5_4:1011575-1011594 Msa0828460:intron 25.0%
! AATCAAAAAGTGCACTACTT+TGG - chr5_4:1010868-1010887 Msa0828460:CDS 30.0%
! ACCTCAATCTACAACTTTTT+CGG + chr5_4:1011008-1011027 None:intergenic 30.0%
ATGCTTTCTCTGTTGATATT+GGG + chr5_4:1011048-1011067 None:intergenic 30.0%
ATGAAGCTGATATGATCATA+AGG - chr5_4:1011076-1011095 Msa0828460:CDS 30.0%
ATAAGGTTACACAATCTTCT+AGG - chr5_4:1011093-1011112 Msa0828460:CDS 30.0%
TAAGGTTACACAATCTTCTA+GGG - chr5_4:1011094-1011113 Msa0828460:CDS 30.0%
CGAATGATGTGAAAAACTAT+TGG - chr5_4:1011324-1011343 Msa0828460:intron 30.0%
TTGAAAAAAATTCCAGGTTG+AGG + chr5_4:1011448-1011467 None:intergenic 30.0%
!!! TTTTTTCAACTCATTCACCA+TGG - chr5_4:1011459-1011478 Msa0828460:CDS 30.0%
TCAGAGAAATGAAATCACAA+AGG + chr5_4:1011684-1011703 None:intergenic 30.0%
! AATCAAAAAGTGCACTACTT+TGG - chr5_4:1010868-1010887 Msa0828460:CDS 30.0%
! ACCTCAATCTACAACTTTTT+CGG + chr5_4:1011008-1011027 None:intergenic 30.0%
ATGCTTTCTCTGTTGATATT+GGG + chr5_4:1011048-1011067 None:intergenic 30.0%
ATGAAGCTGATATGATCATA+AGG - chr5_4:1011076-1011095 Msa0828460:CDS 30.0%
ATAAGGTTACACAATCTTCT+AGG - chr5_4:1011093-1011112 Msa0828460:CDS 30.0%
TAAGGTTACACAATCTTCTA+GGG - chr5_4:1011094-1011113 Msa0828460:CDS 30.0%
CGAATGATGTGAAAAACTAT+TGG - chr5_4:1011324-1011343 Msa0828460:intron 30.0%
TTGAAAAAAATTCCAGGTTG+AGG + chr5_4:1011448-1011467 None:intergenic 30.0%
!!! TTTTTTCAACTCATTCACCA+TGG - chr5_4:1011459-1011478 Msa0828460:CDS 30.0%
TCAGAGAAATGAAATCACAA+AGG + chr5_4:1011684-1011703 None:intergenic 30.0%
! AAGTATTTGTTACACTTGGC+AGG - chr5_4:1010970-1010989 Msa0828460:CDS 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - chr5_4:1011007-1011026 Msa0828460:CDS 35.0%
GATGCTTTCTCTGTTGATAT+TGG + chr5_4:1011049-1011068 None:intergenic 35.0%
ACTATTGGCACACAAATTTG+CGG - chr5_4:1011339-1011358 Msa0828460:intron 35.0%
! TTTTGCTTCTTATTCAGCCA+TGG + chr5_4:1011479-1011498 None:intergenic 35.0%
! TCTTTATTTGAAGCCAGTAC+TGG + chr5_4:1011518-1011537 None:intergenic 35.0%
!! GTACTGGCTTCAAATAAAGA+TGG - chr5_4:1011518-1011537 Msa0828460:intron 35.0%
! AATGAGGCATTAGAATCTCT+GGG + chr5_4:1011551-1011570 None:intergenic 35.0%
! TAATGAGGCATTAGAATCTC+TGG + chr5_4:1011552-1011571 None:intergenic 35.0%
AGAGATTCTAATGCCTCATT+AGG - chr5_4:1011551-1011570 Msa0828460:intron 35.0%
TAATGCCTCATTAGGTACTA+TGG - chr5_4:1011559-1011578 Msa0828460:intron 35.0%
TGAAACCATAGTACCTAATG+AGG + chr5_4:1011567-1011586 None:intergenic 35.0%
! CAATGTTGACGGATAATTTG+AGG - chr5_4:1011630-1011649 Msa0828460:intron 35.0%
ACGGATAATTTGAGGAACTT+GGG - chr5_4:1011638-1011657 Msa0828460:intron 35.0%
! AAGTATTTGTTACACTTGGC+AGG - chr5_4:1010970-1010989 Msa0828460:CDS 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - chr5_4:1011007-1011026 Msa0828460:CDS 35.0%
GATGCTTTCTCTGTTGATAT+TGG + chr5_4:1011049-1011068 None:intergenic 35.0%
ACTATTGGCACACAAATTTG+CGG - chr5_4:1011339-1011358 Msa0828460:intron 35.0%
! TTTTGCTTCTTATTCAGCCA+TGG + chr5_4:1011479-1011498 None:intergenic 35.0%
! TCTTTATTTGAAGCCAGTAC+TGG + chr5_4:1011518-1011537 None:intergenic 35.0%
!! GTACTGGCTTCAAATAAAGA+TGG - chr5_4:1011518-1011537 Msa0828460:intron 35.0%
! AATGAGGCATTAGAATCTCT+GGG + chr5_4:1011551-1011570 None:intergenic 35.0%
! TAATGAGGCATTAGAATCTC+TGG + chr5_4:1011552-1011571 None:intergenic 35.0%
AGAGATTCTAATGCCTCATT+AGG - chr5_4:1011551-1011570 Msa0828460:intron 35.0%
TAATGCCTCATTAGGTACTA+TGG - chr5_4:1011559-1011578 Msa0828460:intron 35.0%
TGAAACCATAGTACCTAATG+AGG + chr5_4:1011567-1011586 None:intergenic 35.0%
! CAATGTTGACGGATAATTTG+AGG - chr5_4:1011630-1011649 Msa0828460:intron 35.0%
ACGGATAATTTGAGGAACTT+GGG - chr5_4:1011638-1011657 Msa0828460:intron 35.0%
GCCGAAAAAGTTGTAGATTG+AGG - chr5_4:1011004-1011023 Msa0828460:CDS 40.0%
GATCATATCAGCTTCATCCT+CGG + chr5_4:1011073-1011092 None:intergenic 40.0%
!! TACACAATCTTCTAGGGCAT+AGG - chr5_4:1011100-1011119 Msa0828460:CDS 40.0%
GAAGTTATTAAGCCTCAACC+TGG - chr5_4:1011433-1011452 Msa0828460:CDS 40.0%
! TTTTGTGACACAACCAGTAC+TGG - chr5_4:1011502-1011521 Msa0828460:intron 40.0%
ACTACCATGTGCAATGTTGA+CGG - chr5_4:1011619-1011638 Msa0828460:intron 40.0%
TTATCCGTCAACATTGCACA+TGG + chr5_4:1011626-1011645 None:intergenic 40.0%
GACGGATAATTTGAGGAACT+TGG - chr5_4:1011637-1011656 Msa0828460:intron 40.0%
CGGATAATTTGAGGAACTTG+GGG - chr5_4:1011639-1011658 Msa0828460:intron 40.0%
GGATAATTTGAGGAACTTGG+GGG - chr5_4:1011640-1011659 Msa0828460:intron 40.0%
GCCGAAAAAGTTGTAGATTG+AGG - chr5_4:1011004-1011023 Msa0828460:CDS 40.0%
GATCATATCAGCTTCATCCT+CGG + chr5_4:1011073-1011092 None:intergenic 40.0%
!! TACACAATCTTCTAGGGCAT+AGG - chr5_4:1011100-1011119 Msa0828460:CDS 40.0%
GAAGTTATTAAGCCTCAACC+TGG - chr5_4:1011433-1011452 Msa0828460:CDS 40.0%
! TTTTGTGACACAACCAGTAC+TGG - chr5_4:1011502-1011521 Msa0828460:intron 40.0%
ACTACCATGTGCAATGTTGA+CGG - chr5_4:1011619-1011638 Msa0828460:intron 40.0%
TTATCCGTCAACATTGCACA+TGG + chr5_4:1011626-1011645 None:intergenic 40.0%
GACGGATAATTTGAGGAACT+TGG - chr5_4:1011637-1011656 Msa0828460:intron 40.0%
CGGATAATTTGAGGAACTTG+GGG - chr5_4:1011639-1011658 Msa0828460:intron 40.0%
GGATAATTTGAGGAACTTGG+GGG - chr5_4:1011640-1011659 Msa0828460:intron 40.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_4:1011285-1011304 Msa0828460:intron 45.0%
ACATCATTCGCTGTTCTACC+GGG + chr5_4:1011314-1011333 None:intergenic 45.0%
CACATCATTCGCTGTTCTAC+CGG + chr5_4:1011315-1011334 None:intergenic 45.0%
!! AGGAACTTGGGGGAGTATTT+CGG - chr5_4:1011650-1011669 Msa0828460:intron 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_4:1011285-1011304 Msa0828460:intron 45.0%
ACATCATTCGCTGTTCTACC+GGG + chr5_4:1011314-1011333 None:intergenic 45.0%
CACATCATTCGCTGTTCTAC+CGG + chr5_4:1011315-1011334 None:intergenic 45.0%
!! AGGAACTTGGGGGAGTATTT+CGG - chr5_4:1011650-1011669 Msa0828460:intron 45.0%
!! CAACAGAGAAAGCATCACCG+AGG - chr5_4:1011053-1011072 Msa0828460:CDS 50.0%
AGGGCATAGGTAAGTTTCCG+AGG - chr5_4:1011113-1011132 Msa0828460:CDS 50.0%
TTGATTGCTGCAAGGCTTCC+CGG - chr5_4:1011293-1011312 Msa0828460:intron 50.0%
!! GGAACTTGGGGGAGTATTTC+GGG - chr5_4:1011651-1011670 Msa0828460:intron 50.0%
!! CAACAGAGAAAGCATCACCG+AGG - chr5_4:1011053-1011072 Msa0828460:CDS 50.0%
AGGGCATAGGTAAGTTTCCG+AGG - chr5_4:1011113-1011132 Msa0828460:CDS 50.0%
TTGATTGCTGCAAGGCTTCC+CGG - chr5_4:1011293-1011312 Msa0828460:intron 50.0%
!! GGAACTTGGGGGAGTATTTC+GGG - chr5_4:1011651-1011670 Msa0828460:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1010783 1011703 1010783 ID=Msa0828460;Name=Msa0828460
chr5_4 mRNA 1010783 1011703 1010783 ID=Msa0828460-mRNA-1;Parent=Msa0828460;Name=Msa0828460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.66|0.5|0.33|3|0|190
chr5_4 exon 1011698 1011703 1011698 ID=Msa0828460-mRNA-1:exon:219;Parent=Msa0828460-mRNA-1
chr5_4 exon 1011365 1011513 1011365 ID=Msa0828460-mRNA-1:exon:218;Parent=Msa0828460-mRNA-1
chr5_4 exon 1010783 1011200 1010783 ID=Msa0828460-mRNA-1:exon:217;Parent=Msa0828460-mRNA-1
chr5_4 CDS 1011698 1011703 1011698 ID=Msa0828460-mRNA-1:cds;Parent=Msa0828460-mRNA-1
chr5_4 CDS 1011365 1011513 1011365 ID=Msa0828460-mRNA-1:cds;Parent=Msa0828460-mRNA-1
chr5_4 CDS 1010783 1011200 1010783 ID=Msa0828460-mRNA-1:cds;Parent=Msa0828460-mRNA-1
Gene Sequence

>Msa0828460

ATGAATTATTTGTTACACTTGGCAGGATTGAATAGATGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAATCCCAATATCAACAGAGAAAGCATCACCGAGGATGAAGCTGATATGATCATAAGGTTACACAATCTTCTAGGGCATAGATGGTCATTGATTGCTGCAAGGCTTCCCGGTAGAACAGCGAATGATGTGAAAAACTATTGGCACACAAATTTGCGGAAGAAGCTTGCTTTAGAAAAAGAAGAGAAGAAAGAAAAAGAGAAACATAAGGAAACTATGAAAACACACATGAAGTTATTAAGCCTCAACCTGGAATTTTTTTCAACTCATTCACCATGGCTGAATAAGAAGCAAAATAATTTTGTGACACAACCAGTACTGGCTTCAAATAAAGATGGTAATGTTCCCAGAGATTCTAATGCCTCATTAGGTACTATGGTTTCAAATCAAATTGGTAGAGATTGTGCTTCTGCTTCACTACCATGTGCAATGTTGACGGATAATTTGAGGAACTTGGGGGAGTATTTCGGGATTTCAACCTTTGTGATTTCATTTCTCTGA
Protein sequence

>Msa0828460

MNYLLHLAGLNRCRKSCRLRWLNYLNPNINRESITEDEADMIIRLHNLLGHRWSLIAARLPGRTANDVKNYWHTNLRKKLALEKEEKKEKEKHKETMKTHMKLLSLNLEFFSTHSPWLNKKQNNFVTQPVLASNKDGNVPRDSNASLGTMVSNQIGRDCASASLPCAMLTDNLRNLGEYFGISTFVISFL*