Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828610 | XP_013459745.1 | 92.905 | 296 | 15 | 3 | 1 | 295 | 1 | 291 | 4.10e-177 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828610 | sp|Q9FKZ3|LBD36_ARATH | 64.925 | 134 | 46 | 1 | 1 | 134 | 1 | 133 | 6.79e-53 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828610 | A0A072UWH3 | 92.905 | 296 | 15 | 3 | 1 | 295 | 1 | 291 | 1.96e-177 | 500 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0828610 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828610 | MtrunA17_Chr3g0097221 | 92.905 | 296 | 15 | 3 | 1 | 295 | 1 | 291 | 0.0 | 500 |
| Msa0828610 | MtrunA17_Chr5g0402611 | 62.941 | 170 | 51 | 5 | 2 | 169 | 3 | 162 | 1.83e-60 | 195 |
| Msa0828610 | MtrunA17_Chr3g0115431 | 74.576 | 118 | 28 | 2 | 1 | 117 | 2 | 118 | 1.81e-55 | 179 |
| Msa0828610 | MtrunA17_Chr4g0058651 | 67.593 | 108 | 35 | 0 | 5 | 112 | 9 | 116 | 4.03e-48 | 159 |
| Msa0828610 | MtrunA17_Chr7g0227511 | 66.667 | 108 | 36 | 0 | 4 | 111 | 8 | 115 | 3.16e-47 | 156 |
| Msa0828610 | MtrunA17_Chr6g0449641 | 65.455 | 110 | 38 | 0 | 2 | 111 | 4 | 113 | 4.08e-47 | 155 |
| Msa0828610 | MtrunA17_Chr3g0117121 | 65.179 | 112 | 39 | 0 | 2 | 113 | 5 | 116 | 6.10e-47 | 156 |
| Msa0828610 | MtrunA17_Chr8g0353981 | 69.091 | 110 | 34 | 0 | 1 | 110 | 1 | 110 | 5.13e-46 | 155 |
| Msa0828610 | MtrunA17_Chr5g0437571 | 50.676 | 148 | 60 | 3 | 5 | 149 | 4 | 141 | 3.21e-45 | 150 |
| Msa0828610 | MtrunA17_Chr6g0449651 | 63.551 | 107 | 39 | 0 | 4 | 110 | 64 | 170 | 6.64e-44 | 148 |
| Msa0828610 | MtrunA17_Chr3g0114061 | 45.695 | 151 | 71 | 2 | 3 | 152 | 4 | 144 | 3.10e-42 | 142 |
| Msa0828610 | MtrunA17_Chr3g0106101 | 55.140 | 107 | 48 | 0 | 1 | 107 | 1 | 107 | 6.89e-41 | 140 |
| Msa0828610 | MtrunA17_Chr4g0043421 | 60.396 | 101 | 40 | 0 | 6 | 106 | 14 | 114 | 8.45e-40 | 137 |
| Msa0828610 | MtrunA17_Chr5g0438091 | 55.963 | 109 | 48 | 0 | 4 | 112 | 36 | 144 | 8.49e-40 | 137 |
| Msa0828610 | MtrunA17_Chr8g0374601 | 39.352 | 216 | 103 | 6 | 7 | 216 | 26 | 219 | 2.77e-39 | 139 |
| Msa0828610 | MtrunA17_Chr3g0129071 | 57.009 | 107 | 46 | 0 | 6 | 112 | 46 | 152 | 2.95e-39 | 137 |
| Msa0828610 | MtrunA17_Chr2g0311601 | 54.630 | 108 | 49 | 0 | 6 | 113 | 12 | 119 | 9.82e-39 | 134 |
| Msa0828610 | MtrunA17_Chr3g0113891 | 58.824 | 102 | 42 | 0 | 4 | 105 | 11 | 112 | 2.05e-38 | 134 |
| Msa0828610 | MtrunA17_Chr5g0437401 | 56.190 | 105 | 46 | 0 | 4 | 108 | 8 | 112 | 7.84e-38 | 132 |
| Msa0828610 | MtrunA17_Chr1g0184281 | 59.048 | 105 | 42 | 1 | 3 | 106 | 11 | 115 | 5.70e-36 | 128 |
| Msa0828610 | MtrunA17_Chr8g0374591 | 53.571 | 112 | 51 | 1 | 7 | 118 | 8 | 118 | 2.93e-34 | 121 |
| Msa0828610 | MtrunA17_Chr7g0260971 | 53.448 | 116 | 46 | 2 | 1 | 108 | 1 | 116 | 4.05e-34 | 124 |
| Msa0828610 | MtrunA17_Chr1g0200201 | 52.885 | 104 | 49 | 0 | 8 | 111 | 73 | 176 | 5.44e-34 | 123 |
| Msa0828610 | MtrunA17_Chr4g0030001 | 45.455 | 132 | 69 | 2 | 6 | 136 | 23 | 152 | 6.51e-34 | 122 |
| Msa0828610 | MtrunA17_Chr5g0432451 | 56.604 | 106 | 46 | 0 | 6 | 111 | 42 | 147 | 8.61e-34 | 123 |
| Msa0828610 | MtrunA17_Chr5g0444351 | 43.357 | 143 | 76 | 2 | 8 | 148 | 6 | 145 | 1.09e-33 | 120 |
| Msa0828610 | MtrunA17_Chr7g0225111 | 49.091 | 110 | 56 | 0 | 6 | 115 | 4 | 113 | 2.76e-33 | 118 |
| Msa0828610 | MtrunA17_Chr8g0374581 | 42.593 | 162 | 69 | 4 | 7 | 167 | 8 | 146 | 9.12e-33 | 120 |
| Msa0828610 | MtrunA17_Chr7g0261031 | 50.877 | 114 | 55 | 1 | 1 | 113 | 2 | 115 | 3.09e-32 | 119 |
| Msa0828610 | MtrunA17_Chr8g0351701 | 52.336 | 107 | 50 | 1 | 7 | 112 | 23 | 129 | 1.12e-31 | 117 |
| Msa0828610 | MtrunA17_Chr5g0435641 | 37.725 | 167 | 89 | 5 | 1 | 159 | 1 | 160 | 3.40e-31 | 115 |
| Msa0828610 | MtrunA17_Chr7g0245871 | 55.882 | 102 | 44 | 1 | 7 | 107 | 27 | 128 | 5.43e-31 | 116 |
| Msa0828610 | MtrunA17_Chr1g0184271 | 45.385 | 130 | 69 | 2 | 7 | 134 | 12 | 141 | 9.42e-31 | 115 |
| Msa0828610 | MtrunA17_Chr8g0351721 | 50.893 | 112 | 54 | 1 | 7 | 117 | 18 | 129 | 4.67e-30 | 113 |
| Msa0828610 | MtrunA17_Chr6g0460951 | 41.333 | 150 | 78 | 3 | 6 | 152 | 39 | 181 | 4.79e-29 | 110 |
| Msa0828610 | MtrunA17_Chr6g0452691 | 32.632 | 190 | 103 | 4 | 1 | 187 | 3 | 170 | 6.71e-28 | 106 |
| Msa0828610 | MtrunA17_Chr6g0460941 | 45.263 | 95 | 51 | 1 | 1 | 94 | 1 | 95 | 5.77e-25 | 95.9 |
| Msa0828610 | MtrunA17_Chr7g0245861 | 56.667 | 90 | 36 | 2 | 7 | 93 | 12 | 101 | 5.78e-25 | 97.4 |
| Msa0828610 | MtrunA17_Chr6g0452661 | 43.925 | 107 | 55 | 2 | 5 | 108 | 7 | 111 | 2.84e-24 | 98.6 |
| Msa0828610 | MtrunA17_Chr6g0452671 | 41.584 | 101 | 59 | 0 | 4 | 104 | 8 | 108 | 1.26e-23 | 95.5 |
| Msa0828610 | MtrunA17_Chr4g0055441 | 41.176 | 102 | 59 | 1 | 8 | 108 | 3 | 104 | 1.40e-23 | 94.4 |
| Msa0828610 | MtrunA17_Chr4g0059901 | 45.000 | 100 | 55 | 0 | 8 | 107 | 11 | 110 | 6.90e-23 | 95.1 |
| Msa0828610 | MtrunA17_Chr8g0342351 | 37.864 | 103 | 64 | 0 | 8 | 110 | 13 | 115 | 4.58e-21 | 90.1 |
| Msa0828610 | MtrunA17_Chr5g0439111 | 43.519 | 108 | 60 | 1 | 5 | 111 | 7 | 114 | 5.15e-21 | 89.4 |
| Msa0828610 | MtrunA17_Chr4g0040831 | 39.175 | 97 | 59 | 0 | 8 | 104 | 16 | 112 | 2.70e-18 | 81.3 |
| Msa0828610 | MtrunA17_Chr2g0326041 | 60.417 | 48 | 19 | 0 | 6 | 53 | 32 | 79 | 6.18e-17 | 74.3 |
| Msa0828610 | MtrunA17_Chr2g0330201 | 33.663 | 101 | 67 | 0 | 8 | 108 | 20 | 120 | 2.40e-16 | 77.8 |
| Msa0828610 | MtrunA17_Chr4g0046201 | 33.684 | 95 | 56 | 1 | 6 | 100 | 5 | 92 | 9.88e-14 | 69.7 |
| Msa0828610 | MtrunA17_Chr2g0326051 | 41.667 | 84 | 46 | 1 | 52 | 132 | 5 | 88 | 1.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828610 | AT5G66870.1 | 64.925 | 134 | 46 | 1 | 1 | 134 | 1 | 133 | 6.91e-54 | 178 |
| Msa0828610 | AT2G23660.2 | 68.224 | 107 | 34 | 0 | 4 | 110 | 2 | 108 | 5.33e-49 | 165 |
| Msa0828610 | AT2G23660.3 | 68.224 | 107 | 34 | 0 | 4 | 110 | 2 | 108 | 5.33e-49 | 165 |
| Msa0828610 | AT2G23660.1 | 68.224 | 107 | 34 | 0 | 4 | 110 | 2 | 108 | 5.33e-49 | 165 |
| Msa0828610 | AT5G63090.4 | 65.179 | 112 | 39 | 0 | 2 | 113 | 6 | 117 | 8.69e-48 | 158 |
| Msa0828610 | AT5G63090.3 | 65.179 | 112 | 39 | 0 | 2 | 113 | 6 | 117 | 8.69e-48 | 158 |
| Msa0828610 | AT5G63090.2 | 65.179 | 112 | 39 | 0 | 2 | 113 | 6 | 117 | 8.69e-48 | 158 |
| Msa0828610 | AT5G63090.1 | 65.179 | 112 | 39 | 0 | 2 | 113 | 6 | 117 | 8.69e-48 | 158 |
| Msa0828610 | AT3G27650.1 | 65.421 | 107 | 37 | 0 | 4 | 110 | 36 | 142 | 6.12e-46 | 152 |
| Msa0828610 | AT1G65620.1 | 69.725 | 109 | 33 | 0 | 2 | 110 | 4 | 112 | 4.48e-45 | 152 |
| Msa0828610 | AT1G65620.4 | 69.725 | 109 | 33 | 0 | 2 | 110 | 4 | 112 | 4.48e-45 | 152 |
| Msa0828610 | AT1G65620.3 | 69.725 | 109 | 33 | 0 | 2 | 110 | 4 | 112 | 4.48e-45 | 152 |
| Msa0828610 | AT1G65620.5 | 69.725 | 109 | 33 | 0 | 2 | 110 | 4 | 112 | 4.48e-45 | 152 |
| Msa0828610 | AT1G65620.2 | 69.725 | 109 | 33 | 0 | 2 | 110 | 4 | 112 | 4.48e-45 | 152 |
| Msa0828610 | AT2G30130.1 | 54.783 | 115 | 51 | 1 | 5 | 118 | 6 | 120 | 2.09e-41 | 142 |
| Msa0828610 | AT1G07900.1 | 44.720 | 161 | 81 | 2 | 6 | 163 | 32 | 187 | 1.30e-38 | 135 |
| Msa0828610 | AT1G31320.1 | 65.909 | 88 | 30 | 0 | 6 | 93 | 12 | 99 | 3.11e-38 | 133 |
| Msa0828610 | AT3G26660.1 | 53.465 | 101 | 47 | 0 | 8 | 108 | 6 | 106 | 2.27e-37 | 129 |
| Msa0828610 | AT3G26620.1 | 53.465 | 101 | 47 | 0 | 8 | 108 | 6 | 106 | 2.97e-37 | 129 |
| Msa0828610 | AT3G11090.1 | 55.556 | 108 | 48 | 0 | 4 | 111 | 8 | 115 | 6.56e-37 | 129 |
| Msa0828610 | AT2G28500.1 | 45.695 | 151 | 77 | 3 | 6 | 151 | 54 | 204 | 7.71e-37 | 131 |
| Msa0828610 | AT2G30340.2 | 50.000 | 118 | 59 | 0 | 6 | 123 | 52 | 169 | 1.02e-36 | 132 |
| Msa0828610 | AT2G30340.1 | 50.000 | 118 | 59 | 0 | 6 | 123 | 51 | 168 | 1.07e-36 | 132 |
| Msa0828610 | AT2G40470.2 | 57.143 | 105 | 45 | 0 | 6 | 110 | 19 | 123 | 4.35e-36 | 128 |
| Msa0828610 | AT2G40470.1 | 47.552 | 143 | 59 | 2 | 6 | 148 | 44 | 170 | 9.80e-36 | 128 |
| Msa0828610 | AT1G16530.1 | 57.282 | 103 | 43 | 1 | 6 | 107 | 13 | 115 | 5.02e-35 | 124 |
| Msa0828610 | AT2G42430.1 | 53.774 | 106 | 48 | 1 | 6 | 110 | 14 | 119 | 4.81e-34 | 124 |
| Msa0828610 | AT3G03760.1 | 55.340 | 103 | 45 | 1 | 6 | 107 | 50 | 152 | 5.72e-33 | 122 |
| Msa0828610 | AT3G58190.1 | 51.456 | 103 | 49 | 1 | 7 | 108 | 11 | 113 | 1.04e-31 | 117 |
| Msa0828610 | AT3G50510.1 | 40.876 | 137 | 76 | 1 | 1 | 132 | 6 | 142 | 6.78e-31 | 115 |
| Msa0828610 | AT3G50510.2 | 40.876 | 137 | 76 | 1 | 1 | 132 | 6 | 142 | 6.78e-31 | 115 |
| Msa0828610 | AT2G42440.1 | 49.533 | 107 | 53 | 1 | 1 | 106 | 1 | 107 | 7.27e-31 | 116 |
| Msa0828610 | AT2G31310.1 | 43.478 | 138 | 76 | 2 | 6 | 142 | 6 | 142 | 1.95e-30 | 113 |
| Msa0828610 | AT2G45420.1 | 52.885 | 104 | 48 | 1 | 10 | 112 | 40 | 143 | 3.32e-29 | 112 |
| Msa0828610 | AT4G00210.1 | 52.427 | 103 | 48 | 1 | 7 | 108 | 11 | 113 | 3.95e-29 | 111 |
| Msa0828610 | AT4G00220.1 | 51.923 | 104 | 49 | 1 | 10 | 112 | 20 | 123 | 5.43e-29 | 110 |
| Msa0828610 | AT5G06080.1 | 45.690 | 116 | 62 | 1 | 1 | 115 | 1 | 116 | 2.14e-27 | 105 |
| Msa0828610 | AT2G45410.1 | 50.000 | 114 | 52 | 2 | 10 | 118 | 19 | 132 | 8.67e-27 | 103 |
| Msa0828610 | AT3G13850.1 | 39.806 | 103 | 62 | 0 | 8 | 110 | 37 | 139 | 2.12e-24 | 99.8 |
| Msa0828610 | AT5G35900.1 | 43.137 | 102 | 58 | 0 | 8 | 109 | 6 | 107 | 3.19e-24 | 97.8 |
| Msa0828610 | AT3G47870.1 | 39.806 | 103 | 62 | 0 | 8 | 110 | 37 | 139 | 7.43e-23 | 96.7 |
| Msa0828610 | AT1G72980.1 | 37.500 | 104 | 65 | 0 | 4 | 107 | 10 | 113 | 9.14e-19 | 83.2 |
| Msa0828610 | AT1G06280.1 | 36.364 | 110 | 68 | 1 | 8 | 117 | 25 | 132 | 4.19e-17 | 78.6 |
| Msa0828610 | AT4G22700.1 | 36.538 | 104 | 64 | 2 | 8 | 110 | 6 | 108 | 2.26e-15 | 73.6 |
| Msa0828610 | AT2G19820.1 | 34.066 | 91 | 59 | 1 | 4 | 93 | 9 | 99 | 9.58e-13 | 64.3 |
| Msa0828610 | AT5G15060.1 | 42.466 | 73 | 40 | 1 | 8 | 78 | 18 | 90 | 5.69e-12 | 62.8 |
Find 74 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGGAATTCGCAGTTTC+CGG | 0.220426 | 5_4:+1415210 | Msa0828610:CDS |
| TGAACTCACTGTGGCGAAAA+AGG | 0.246678 | 5_4:+1415093 | Msa0828610:CDS |
| CAGTGCTTATTGATGAATTC+TGG | 0.262426 | 5_4:+1415151 | Msa0828610:CDS |
| GGTGCCGCCGGCGGCGTTGG+TGG | 0.323985 | 5_4:+1415502 | Msa0828610:CDS |
| ATCTCTTGAGGAAAATTGTT+AGG | 0.328058 | 5_4:-1415247 | None:intergenic |
| GTGCCGCCGGCGGCGTTGGT+GGG | 0.355975 | 5_4:+1415503 | Msa0828610:CDS |
| CGTATAAAAGACCCGGTCTA+TGG | 0.361454 | 5_4:+1415019 | Msa0828610:CDS |
| GCTGATGTAGCTCATCCTTT+GGG | 0.383513 | 5_4:+1415448 | Msa0828610:CDS |
| CAATGGAATTCGCAGTTTCC+GGG | 0.386239 | 5_4:+1415211 | Msa0828610:CDS |
| AACAAAAGCTGTGCCTCAAC+TGG | 0.391954 | 5_4:-1415598 | None:intergenic |
| TGAAGACGCGGTGAAATCTT+TGG | 0.393603 | 5_4:+1414979 | Msa0828610:CDS |
| TGCTGATGTAGCTCATCCTT+TGG | 0.394624 | 5_4:+1415447 | Msa0828610:CDS |
| CTTAGGGCTGGTGCTGGTGG+TGG | 0.394727 | 5_4:+1415361 | Msa0828610:CDS |
| GCCGCCGGCGGCGTTGGTGG+GGG | 0.400818 | 5_4:+1415505 | Msa0828610:CDS |
| TGCCGCCGGCGGCGTTGGTG+GGG | 0.402612 | 5_4:+1415504 | Msa0828610:CDS |
| TTGAGGATTCAAATTATAAC+CGG | 0.410153 | 5_4:-1415122 | None:intergenic |
| TGCTGCTGCTGTTGCTGCTG+AGG | 0.413389 | 5_4:-1415187 | None:intergenic |
| CAAGAGATGGTTGGAGGAGG+TGG | 0.424027 | 5_4:+1415262 | Msa0828610:CDS |
| TCCACAAGAGTATTTGCTTA+GGG | 0.426377 | 5_4:+1415345 | Msa0828610:CDS |
| GAGTTTCTCTTAACTTCTGT+TGG | 0.444328 | 5_4:-1415066 | None:intergenic |
| AAGATTTCACCGCGTCTTCA+CGG | 0.446492 | 5_4:-1414976 | None:intergenic |
| GCGAATGTTCACCGTGTCTT+CGG | 0.450379 | 5_4:+1414908 | Msa0828610:CDS |
| CTCCACAAGAGTATTTGCTT+AGG | 0.462928 | 5_4:+1415344 | Msa0828610:CDS |
| GGTGGTGCCGCCGGCGGCGT+TGG | 0.473054 | 5_4:+1415499 | Msa0828610:CDS |
| AATAAGCACTGCATGGTTTG+AGG | 0.474685 | 5_4:-1415139 | None:intergenic |
| CAAGAGTATTTGCTTAGGGC+TGG | 0.482818 | 5_4:+1415349 | Msa0828610:CDS |
| TTGCTTAGGGCTGGTGCTGG+TGG | 0.489236 | 5_4:+1415358 | Msa0828610:CDS |
| TCTCTTGAGGAAAATTGTTA+GGG | 0.494095 | 5_4:-1415246 | None:intergenic |
| GGTGAAATCTTTGGCATATG+AGG | 0.496311 | 5_4:+1414988 | Msa0828610:CDS |
| TGCTGGTGGTGGATATCAGA+TGG | 0.503769 | 5_4:+1415372 | Msa0828610:CDS |
| GGTGCTAGTGGTGGTGCCGC+CGG | 0.504460 | 5_4:+1415490 | Msa0828610:CDS |
| ACAGCAACACCACCAACAGC+AGG | 0.507165 | 5_4:-1415415 | None:intergenic |
| TATTTGCTTAGGGCTGGTGC+TGG | 0.508616 | 5_4:+1415355 | Msa0828610:CDS |
| GATGGGTGGTGGACATCAGA+TGG | 0.509082 | 5_4:+1415390 | Msa0828610:CDS |
| GGTGGATATCAGATGGGTGG+TGG | 0.514995 | 5_4:+1415379 | Msa0828610:CDS |
| CCTCAAGAGATGGTTGGAGG+AGG | 0.527135 | 5_4:+1415259 | Msa0828610:CDS |
| TCACCAGCTTCTTGATTCTG+TGG | 0.531207 | 5_4:-1415625 | None:intergenic |
| TTTCCTCAAGAGATGGTTGG+AGG | 0.535089 | 5_4:+1415256 | Msa0828610:CDS |
| GTAGCTCATCCTTTGGGCAT+GGG | 0.544139 | 5_4:+1415454 | Msa0828610:CDS |
| TGTAGCTCATCCTTTGGGCA+TGG | 0.546841 | 5_4:+1415453 | Msa0828610:CDS |
| AATCAAGAAGCTGGTGAGGA+TGG | 0.547877 | 5_4:+1415631 | Msa0828610:CDS |
| CATCAGATGGGTCCTGCTGT+TGG | 0.549546 | 5_4:+1415403 | Msa0828610:CDS |
| CAGATGGGTCCTGCTGTTGG+TGG | 0.551454 | 5_4:+1415406 | Msa0828610:CDS |
| CATGAGCTTCAGATGGGTGG+TGG | 0.551899 | 5_4:+1415310 | Msa0828610:CDS |
| AGACCTACACATCCATAGAC+CGG | 0.559621 | 5_4:-1415031 | None:intergenic |
| ACAAGAACATGAGCTTCAGA+TGG | 0.565035 | 5_4:+1415303 | Msa0828610:CDS |
| GCCCTAAGCAAATACTCTTG+TGG | 0.567725 | 5_4:-1415346 | None:intergenic |
| TCTCCACAGAATCAAGAAGC+TGG | 0.567957 | 5_4:+1415622 | Msa0828610:CDS |
| GCTGGTGGTGGATATCAGAT+GGG | 0.568261 | 5_4:+1415373 | Msa0828610:CDS |
| CGTTGCTTGCACCGAAGACA+CGG | 0.571833 | 5_4:-1414919 | None:intergenic |
| TCAAAATTTCCCATGCCCAA+AGG | 0.572126 | 5_4:-1415463 | None:intergenic |
| CAACAACATAATTATCATGT+TGG | 0.574402 | 5_4:+1415559 | Msa0828610:CDS |
| ATTGAAAGAGCTTGACGTGA+AGG | 0.574685 | 5_4:+1414952 | Msa0828610:CDS |
| CAAGAACATGAGCTTCAGAT+GGG | 0.592057 | 5_4:+1415304 | Msa0828610:CDS |
| ATGGGTGGTGGACATCAGAT+GGG | 0.608656 | 5_4:+1415391 | Msa0828610:CDS |
| ACAGAATCAAGAAGCTGGTG+AGG | 0.614291 | 5_4:+1415627 | Msa0828610:CDS |
| GCTAGTGGTGGTGCCGCCGG+CGG | 0.616425 | 5_4:+1415493 | Msa0828610:CDS |
| GAACATGAGCTTCAGATGGG+TGG | 0.616835 | 5_4:+1415307 | Msa0828610:CDS |
| GACCCGGTCTATGGATGTGT+AGG | 0.616889 | 5_4:+1415028 | Msa0828610:CDS |
| AGCAACAGCAGCAGCAACAA+TGG | 0.617441 | 5_4:+1415194 | Msa0828610:CDS |
| ATTCATCAATAAGCACTGCA+TGG | 0.624383 | 5_4:-1415146 | None:intergenic |
| GGTGAGGATGGTAAAAGTGT+TGG | 0.628808 | 5_4:+1415643 | Msa0828610:CDS |
| TGCTCATGCTAATCCAGTTG+AGG | 0.630057 | 5_4:+1415585 | Msa0828610:CDS |
| TGAACATTCGCGAATCGCTG+TGG | 0.632773 | 5_4:-1414896 | None:intergenic |
| GGTGGTGGATATCAGATGGG+TGG | 0.634173 | 5_4:+1415376 | Msa0828610:CDS |
| GACCTACACATCCATAGACC+GGG | 0.636051 | 5_4:-1415030 | None:intergenic |
| AGAAACTTGCATGCAGCACA+TGG | 0.636835 | 5_4:-1414818 | None:intergenic |
| CGTGAAGGACCGTGAAGACG+CGG | 0.637430 | 5_4:+1414967 | Msa0828610:CDS |
| CCTCCTCCAACCATCTCTTG+AGG | 0.638399 | 5_4:-1415259 | None:intergenic |
| AGAGTCTCGTATAAAAGACC+CGG | 0.647723 | 5_4:+1415012 | Msa0828610:CDS |
| TTTGACAATGGTGCTAGTGG+TGG | 0.649859 | 5_4:+1415481 | Msa0828610:CDS |
| TATTATCAGATTCAGCAGCA+AGG | 0.652680 | 5_4:+1415529 | Msa0828610:CDS |
| AACTCAAAATGAACTCACTG+TGG | 0.711640 | 5_4:+1415084 | Msa0828610:CDS |
| TATCAGATTCAGCAGCAAGG+AGG | 0.718083 | 5_4:+1415532 | Msa0828610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGAGGATTCAAATTATAAC+CGG | - | chr5_4:1415125-1415144 | None:intergenic | 25.0% |
| ! | CAACAACATAATTATCATGT+TGG | + | chr5_4:1415559-1415578 | Msa0828610:CDS | 25.0% |
| ! | TTGAGGATTCAAATTATAAC+CGG | - | chr5_4:1415125-1415144 | None:intergenic | 25.0% |
| ! | CAACAACATAATTATCATGT+TGG | + | chr5_4:1415559-1415578 | Msa0828610:CDS | 25.0% |
| TTAGGGTAATTCAAAAAACC+CGG | - | chr5_4:1415232-1415251 | None:intergenic | 30.0% | |
| TCTCTTGAGGAAAATTGTTA+GGG | - | chr5_4:1415249-1415268 | None:intergenic | 30.0% | |
| ATCTCTTGAGGAAAATTGTT+AGG | - | chr5_4:1415250-1415269 | None:intergenic | 30.0% | |
| ! | TAACAATTTTCCTCAAGAGA+TGG | + | chr5_4:1415249-1415268 | Msa0828610:CDS | 30.0% |
| TTAGGGTAATTCAAAAAACC+CGG | - | chr5_4:1415232-1415251 | None:intergenic | 30.0% | |
| TCTCTTGAGGAAAATTGTTA+GGG | - | chr5_4:1415249-1415268 | None:intergenic | 30.0% | |
| ATCTCTTGAGGAAAATTGTT+AGG | - | chr5_4:1415250-1415269 | None:intergenic | 30.0% | |
| ! | TAACAATTTTCCTCAAGAGA+TGG | + | chr5_4:1415249-1415268 | Msa0828610:CDS | 30.0% |
| GAGTTTCTCTTAACTTCTGT+TGG | - | chr5_4:1415069-1415088 | None:intergenic | 35.0% | |
| AACTCAAAATGAACTCACTG+TGG | + | chr5_4:1415084-1415103 | Msa0828610:CDS | 35.0% | |
| ! | ATTCATCAATAAGCACTGCA+TGG | - | chr5_4:1415149-1415168 | None:intergenic | 35.0% |
| CAGTGCTTATTGATGAATTC+TGG | + | chr5_4:1415151-1415170 | Msa0828610:CDS | 35.0% | |
| ! | AATTTTCCTCAAGAGATGGT+TGG | + | chr5_4:1415253-1415272 | Msa0828610:CDS | 35.0% |
| !! | TCCACAAGAGTATTTGCTTA+GGG | + | chr5_4:1415345-1415364 | Msa0828610:CDS | 35.0% |
| !! | AATTTTGACAATGGTGCTAG+TGG | + | chr5_4:1415478-1415497 | Msa0828610:CDS | 35.0% |
| TATTATCAGATTCAGCAGCA+AGG | + | chr5_4:1415529-1415548 | Msa0828610:CDS | 35.0% | |
| GAGTTTCTCTTAACTTCTGT+TGG | - | chr5_4:1415069-1415088 | None:intergenic | 35.0% | |
| AACTCAAAATGAACTCACTG+TGG | + | chr5_4:1415084-1415103 | Msa0828610:CDS | 35.0% | |
| ! | ATTCATCAATAAGCACTGCA+TGG | - | chr5_4:1415149-1415168 | None:intergenic | 35.0% |
| CAGTGCTTATTGATGAATTC+TGG | + | chr5_4:1415151-1415170 | Msa0828610:CDS | 35.0% | |
| ! | AATTTTCCTCAAGAGATGGT+TGG | + | chr5_4:1415253-1415272 | Msa0828610:CDS | 35.0% |
| !! | TCCACAAGAGTATTTGCTTA+GGG | + | chr5_4:1415345-1415364 | Msa0828610:CDS | 35.0% |
| !! | AATTTTGACAATGGTGCTAG+TGG | + | chr5_4:1415478-1415497 | Msa0828610:CDS | 35.0% |
| TATTATCAGATTCAGCAGCA+AGG | + | chr5_4:1415529-1415548 | Msa0828610:CDS | 35.0% | |
| !! | GGATTTTCAGGGAGAAAGTA+AGG | - | chr5_4:1414878-1414897 | None:intergenic | 40.0% |
| ATTGAAAGAGCTTGACGTGA+AGG | + | chr5_4:1414952-1414971 | Msa0828610:CDS | 40.0% | |
| GGTGAAATCTTTGGCATATG+AGG | + | chr5_4:1414988-1415007 | Msa0828610:CDS | 40.0% | |
| AGAGTCTCGTATAAAAGACC+CGG | + | chr5_4:1415012-1415031 | Msa0828610:CDS | 40.0% | |
| ! | AATAAGCACTGCATGGTTTG+AGG | - | chr5_4:1415142-1415161 | None:intergenic | 40.0% |
| ACAATGGAATTCGCAGTTTC+CGG | + | chr5_4:1415210-1415229 | Msa0828610:CDS | 40.0% | |
| ACAAGAACATGAGCTTCAGA+TGG | + | chr5_4:1415303-1415322 | Msa0828610:CDS | 40.0% | |
| CAAGAACATGAGCTTCAGAT+GGG | + | chr5_4:1415304-1415323 | Msa0828610:CDS | 40.0% | |
| !! | CTCCACAAGAGTATTTGCTT+AGG | + | chr5_4:1415344-1415363 | Msa0828610:CDS | 40.0% |
| TCAAAATTTCCCATGCCCAA+AGG | - | chr5_4:1415466-1415485 | None:intergenic | 40.0% | |
| !! | GGCATGGGAAATTTTGACAA+TGG | + | chr5_4:1415469-1415488 | Msa0828610:CDS | 40.0% |
| !! | GGATTTTCAGGGAGAAAGTA+AGG | - | chr5_4:1414878-1414897 | None:intergenic | 40.0% |
| ATTGAAAGAGCTTGACGTGA+AGG | + | chr5_4:1414952-1414971 | Msa0828610:CDS | 40.0% | |
| GGTGAAATCTTTGGCATATG+AGG | + | chr5_4:1414988-1415007 | Msa0828610:CDS | 40.0% | |
| AGAGTCTCGTATAAAAGACC+CGG | + | chr5_4:1415012-1415031 | Msa0828610:CDS | 40.0% | |
| ! | AATAAGCACTGCATGGTTTG+AGG | - | chr5_4:1415142-1415161 | None:intergenic | 40.0% |
| ACAATGGAATTCGCAGTTTC+CGG | + | chr5_4:1415210-1415229 | Msa0828610:CDS | 40.0% | |
| ACAAGAACATGAGCTTCAGA+TGG | + | chr5_4:1415303-1415322 | Msa0828610:CDS | 40.0% | |
| CAAGAACATGAGCTTCAGAT+GGG | + | chr5_4:1415304-1415323 | Msa0828610:CDS | 40.0% | |
| !! | CTCCACAAGAGTATTTGCTT+AGG | + | chr5_4:1415344-1415363 | Msa0828610:CDS | 40.0% |
| TCAAAATTTCCCATGCCCAA+AGG | - | chr5_4:1415466-1415485 | None:intergenic | 40.0% | |
| !! | GGCATGGGAAATTTTGACAA+TGG | + | chr5_4:1415469-1415488 | Msa0828610:CDS | 40.0% |
| AGAAACTTGCATGCAGCACA+TGG | - | chr5_4:1414821-1414840 | None:intergenic | 45.0% | |
| ! | CGAATCGCTGTGGATTTTCA+GGG | - | chr5_4:1414889-1414908 | None:intergenic | 45.0% |
| AAGATTTCACCGCGTCTTCA+CGG | - | chr5_4:1414979-1414998 | None:intergenic | 45.0% | |
| TGAAGACGCGGTGAAATCTT+TGG | + | chr5_4:1414979-1414998 | Msa0828610:CDS | 45.0% | |
| CGTATAAAAGACCCGGTCTA+TGG | + | chr5_4:1415019-1415038 | Msa0828610:CDS | 45.0% | |
| AGACCTACACATCCATAGAC+CGG | - | chr5_4:1415034-1415053 | None:intergenic | 45.0% | |
| TGAACTCACTGTGGCGAAAA+AGG | + | chr5_4:1415093-1415112 | Msa0828610:CDS | 45.0% | |
| CAATGGAATTCGCAGTTTCC+GGG | + | chr5_4:1415211-1415230 | Msa0828610:CDS | 45.0% | |
| TTTCCTCAAGAGATGGTTGG+AGG | + | chr5_4:1415256-1415275 | Msa0828610:CDS | 45.0% | |
| GCCCTAAGCAAATACTCTTG+TGG | - | chr5_4:1415349-1415368 | None:intergenic | 45.0% | |
| !! | CAAGAGTATTTGCTTAGGGC+TGG | + | chr5_4:1415349-1415368 | Msa0828610:CDS | 45.0% |
| TGCTGATGTAGCTCATCCTT+TGG | + | chr5_4:1415447-1415466 | Msa0828610:CDS | 45.0% | |
| GCTGATGTAGCTCATCCTTT+GGG | + | chr5_4:1415448-1415467 | Msa0828610:CDS | 45.0% | |
| ! | TTTGACAATGGTGCTAGTGG+TGG | + | chr5_4:1415481-1415500 | Msa0828610:CDS | 45.0% |
| TATCAGATTCAGCAGCAAGG+AGG | + | chr5_4:1415532-1415551 | Msa0828610:CDS | 45.0% | |
| TGCTCATGCTAATCCAGTTG+AGG | + | chr5_4:1415585-1415604 | Msa0828610:CDS | 45.0% | |
| AACAAAAGCTGTGCCTCAAC+TGG | - | chr5_4:1415601-1415620 | None:intergenic | 45.0% | |
| TCTCCACAGAATCAAGAAGC+TGG | + | chr5_4:1415622-1415641 | Msa0828610:CDS | 45.0% | |
| TCACCAGCTTCTTGATTCTG+TGG | - | chr5_4:1415628-1415647 | None:intergenic | 45.0% | |
| ACAGAATCAAGAAGCTGGTG+AGG | + | chr5_4:1415627-1415646 | Msa0828610:CDS | 45.0% | |
| AATCAAGAAGCTGGTGAGGA+TGG | + | chr5_4:1415631-1415650 | Msa0828610:CDS | 45.0% | |
| ! | GGTGAGGATGGTAAAAGTGT+TGG | + | chr5_4:1415643-1415662 | Msa0828610:CDS | 45.0% |
| AGAAACTTGCATGCAGCACA+TGG | - | chr5_4:1414821-1414840 | None:intergenic | 45.0% | |
| ! | CGAATCGCTGTGGATTTTCA+GGG | - | chr5_4:1414889-1414908 | None:intergenic | 45.0% |
| AAGATTTCACCGCGTCTTCA+CGG | - | chr5_4:1414979-1414998 | None:intergenic | 45.0% | |
| TGAAGACGCGGTGAAATCTT+TGG | + | chr5_4:1414979-1414998 | Msa0828610:CDS | 45.0% | |
| CGTATAAAAGACCCGGTCTA+TGG | + | chr5_4:1415019-1415038 | Msa0828610:CDS | 45.0% | |
| AGACCTACACATCCATAGAC+CGG | - | chr5_4:1415034-1415053 | None:intergenic | 45.0% | |
| TGAACTCACTGTGGCGAAAA+AGG | + | chr5_4:1415093-1415112 | Msa0828610:CDS | 45.0% | |
| CAATGGAATTCGCAGTTTCC+GGG | + | chr5_4:1415211-1415230 | Msa0828610:CDS | 45.0% | |
| TTTCCTCAAGAGATGGTTGG+AGG | + | chr5_4:1415256-1415275 | Msa0828610:CDS | 45.0% | |
| GCCCTAAGCAAATACTCTTG+TGG | - | chr5_4:1415349-1415368 | None:intergenic | 45.0% | |
| !! | CAAGAGTATTTGCTTAGGGC+TGG | + | chr5_4:1415349-1415368 | Msa0828610:CDS | 45.0% |
| TGCTGATGTAGCTCATCCTT+TGG | + | chr5_4:1415447-1415466 | Msa0828610:CDS | 45.0% | |
| GCTGATGTAGCTCATCCTTT+GGG | + | chr5_4:1415448-1415467 | Msa0828610:CDS | 45.0% | |
| ! | TTTGACAATGGTGCTAGTGG+TGG | + | chr5_4:1415481-1415500 | Msa0828610:CDS | 45.0% |
| TATCAGATTCAGCAGCAAGG+AGG | + | chr5_4:1415532-1415551 | Msa0828610:CDS | 45.0% | |
| TGCTCATGCTAATCCAGTTG+AGG | + | chr5_4:1415585-1415604 | Msa0828610:CDS | 45.0% | |
| AACAAAAGCTGTGCCTCAAC+TGG | - | chr5_4:1415601-1415620 | None:intergenic | 45.0% | |
| TCTCCACAGAATCAAGAAGC+TGG | + | chr5_4:1415622-1415641 | Msa0828610:CDS | 45.0% | |
| TCACCAGCTTCTTGATTCTG+TGG | - | chr5_4:1415628-1415647 | None:intergenic | 45.0% | |
| ACAGAATCAAGAAGCTGGTG+AGG | + | chr5_4:1415627-1415646 | Msa0828610:CDS | 45.0% | |
| AATCAAGAAGCTGGTGAGGA+TGG | + | chr5_4:1415631-1415650 | Msa0828610:CDS | 45.0% | |
| ! | GGTGAGGATGGTAAAAGTGT+TGG | + | chr5_4:1415643-1415662 | Msa0828610:CDS | 45.0% |
| ! | GCGAATCGCTGTGGATTTTC+AGG | - | chr5_4:1414890-1414909 | None:intergenic | 50.0% |
| TGAACATTCGCGAATCGCTG+TGG | - | chr5_4:1414899-1414918 | None:intergenic | 50.0% | |
| GCGAATGTTCACCGTGTCTT+CGG | + | chr5_4:1414908-1414927 | Msa0828610:CDS | 50.0% | |
| GACCTACACATCCATAGACC+GGG | - | chr5_4:1415033-1415052 | None:intergenic | 50.0% | |
| AGCAACAGCAGCAGCAACAA+TGG | + | chr5_4:1415194-1415213 | Msa0828610:CDS | 50.0% | |
| GAACATGAGCTTCAGATGGG+TGG | + | chr5_4:1415307-1415326 | Msa0828610:CDS | 50.0% | |
| ! | TATTTGCTTAGGGCTGGTGC+TGG | + | chr5_4:1415355-1415374 | Msa0828610:CDS | 50.0% |
| !! | TGCTGGTGGTGGATATCAGA+TGG | + | chr5_4:1415372-1415391 | Msa0828610:CDS | 50.0% |
| !! | GCTGGTGGTGGATATCAGAT+GGG | + | chr5_4:1415373-1415392 | Msa0828610:CDS | 50.0% |
| !! | ATGGGTGGTGGACATCAGAT+GGG | + | chr5_4:1415391-1415410 | Msa0828610:CDS | 50.0% |
| TGTAGCTCATCCTTTGGGCA+TGG | + | chr5_4:1415453-1415472 | Msa0828610:CDS | 50.0% | |
| GTAGCTCATCCTTTGGGCAT+GGG | + | chr5_4:1415454-1415473 | Msa0828610:CDS | 50.0% | |
| ! | GCGAATCGCTGTGGATTTTC+AGG | - | chr5_4:1414890-1414909 | None:intergenic | 50.0% |
| TGAACATTCGCGAATCGCTG+TGG | - | chr5_4:1414899-1414918 | None:intergenic | 50.0% | |
| GCGAATGTTCACCGTGTCTT+CGG | + | chr5_4:1414908-1414927 | Msa0828610:CDS | 50.0% | |
| GACCTACACATCCATAGACC+GGG | - | chr5_4:1415033-1415052 | None:intergenic | 50.0% | |
| AGCAACAGCAGCAGCAACAA+TGG | + | chr5_4:1415194-1415213 | Msa0828610:CDS | 50.0% | |
| GAACATGAGCTTCAGATGGG+TGG | + | chr5_4:1415307-1415326 | Msa0828610:CDS | 50.0% | |
| ! | TATTTGCTTAGGGCTGGTGC+TGG | + | chr5_4:1415355-1415374 | Msa0828610:CDS | 50.0% |
| !! | TGCTGGTGGTGGATATCAGA+TGG | + | chr5_4:1415372-1415391 | Msa0828610:CDS | 50.0% |
| !! | GCTGGTGGTGGATATCAGAT+GGG | + | chr5_4:1415373-1415392 | Msa0828610:CDS | 50.0% |
| !! | ATGGGTGGTGGACATCAGAT+GGG | + | chr5_4:1415391-1415410 | Msa0828610:CDS | 50.0% |
| TGTAGCTCATCCTTTGGGCA+TGG | + | chr5_4:1415453-1415472 | Msa0828610:CDS | 50.0% | |
| GTAGCTCATCCTTTGGGCAT+GGG | + | chr5_4:1415454-1415473 | Msa0828610:CDS | 50.0% | |
| CGTTGCTTGCACCGAAGACA+CGG | - | chr5_4:1414922-1414941 | None:intergenic | 55.0% | |
| GACCCGGTCTATGGATGTGT+AGG | + | chr5_4:1415028-1415047 | Msa0828610:CDS | 55.0% | |
| GTGGCGAAAAAGGAACTCGC+CGG | + | chr5_4:1415103-1415122 | Msa0828610:CDS | 55.0% | |
| CCTCCTCCAACCATCTCTTG+AGG | - | chr5_4:1415262-1415281 | None:intergenic | 55.0% | |
| CCTCAAGAGATGGTTGGAGG+AGG | + | chr5_4:1415259-1415278 | Msa0828610:CDS | 55.0% | |
| CAAGAGATGGTTGGAGGAGG+TGG | + | chr5_4:1415262-1415281 | Msa0828610:CDS | 55.0% | |
| CATGAGCTTCAGATGGGTGG+TGG | + | chr5_4:1415310-1415329 | Msa0828610:CDS | 55.0% | |
| !! | GGTGGTGGATATCAGATGGG+TGG | + | chr5_4:1415376-1415395 | Msa0828610:CDS | 55.0% |
| GGTGGATATCAGATGGGTGG+TGG | + | chr5_4:1415379-1415398 | Msa0828610:CDS | 55.0% | |
| !! | GATGGGTGGTGGACATCAGA+TGG | + | chr5_4:1415390-1415409 | Msa0828610:CDS | 55.0% |
| CATCAGATGGGTCCTGCTGT+TGG | + | chr5_4:1415403-1415422 | Msa0828610:CDS | 55.0% | |
| ACAGCAACACCACCAACAGC+AGG | - | chr5_4:1415418-1415437 | None:intergenic | 55.0% | |
| CGTTGCTTGCACCGAAGACA+CGG | - | chr5_4:1414922-1414941 | None:intergenic | 55.0% | |
| GACCCGGTCTATGGATGTGT+AGG | + | chr5_4:1415028-1415047 | Msa0828610:CDS | 55.0% | |
| GTGGCGAAAAAGGAACTCGC+CGG | + | chr5_4:1415103-1415122 | Msa0828610:CDS | 55.0% | |
| CCTCCTCCAACCATCTCTTG+AGG | - | chr5_4:1415262-1415281 | None:intergenic | 55.0% | |
| CCTCAAGAGATGGTTGGAGG+AGG | + | chr5_4:1415259-1415278 | Msa0828610:CDS | 55.0% | |
| CAAGAGATGGTTGGAGGAGG+TGG | + | chr5_4:1415262-1415281 | Msa0828610:CDS | 55.0% | |
| CATGAGCTTCAGATGGGTGG+TGG | + | chr5_4:1415310-1415329 | Msa0828610:CDS | 55.0% | |
| !! | GGTGGTGGATATCAGATGGG+TGG | + | chr5_4:1415376-1415395 | Msa0828610:CDS | 55.0% |
| GGTGGATATCAGATGGGTGG+TGG | + | chr5_4:1415379-1415398 | Msa0828610:CDS | 55.0% | |
| !! | GATGGGTGGTGGACATCAGA+TGG | + | chr5_4:1415390-1415409 | Msa0828610:CDS | 55.0% |
| CATCAGATGGGTCCTGCTGT+TGG | + | chr5_4:1415403-1415422 | Msa0828610:CDS | 55.0% | |
| ACAGCAACACCACCAACAGC+AGG | - | chr5_4:1415418-1415437 | None:intergenic | 55.0% | |
| CGTGAAGGACCGTGAAGACG+CGG | + | chr5_4:1414967-1414986 | Msa0828610:CDS | 60.0% | |
| TGCTGCTGCTGTTGCTGCTG+AGG | - | chr5_4:1415190-1415209 | None:intergenic | 60.0% | |
| ! | TTGCTTAGGGCTGGTGCTGG+TGG | + | chr5_4:1415358-1415377 | Msa0828610:CDS | 60.0% |
| CAGATGGGTCCTGCTGTTGG+TGG | + | chr5_4:1415406-1415425 | Msa0828610:CDS | 60.0% | |
| CGTGAAGGACCGTGAAGACG+CGG | + | chr5_4:1414967-1414986 | Msa0828610:CDS | 60.0% | |
| TGCTGCTGCTGTTGCTGCTG+AGG | - | chr5_4:1415190-1415209 | None:intergenic | 60.0% | |
| ! | TTGCTTAGGGCTGGTGCTGG+TGG | + | chr5_4:1415358-1415377 | Msa0828610:CDS | 60.0% |
| CAGATGGGTCCTGCTGTTGG+TGG | + | chr5_4:1415406-1415425 | Msa0828610:CDS | 60.0% | |
| !! | CTTAGGGCTGGTGCTGGTGG+TGG | + | chr5_4:1415361-1415380 | Msa0828610:CDS | 65.0% |
| !! | CTTAGGGCTGGTGCTGGTGG+TGG | + | chr5_4:1415361-1415380 | Msa0828610:CDS | 65.0% |
| !! | GGTGCTAGTGGTGGTGCCGC+CGG | + | chr5_4:1415490-1415509 | Msa0828610:CDS | 70.0% |
| ATAGCCCCCACCAACGCCGC+CGG | - | chr5_4:1415512-1415531 | None:intergenic | 70.0% | |
| !! | GGTGCTAGTGGTGGTGCCGC+CGG | + | chr5_4:1415490-1415509 | Msa0828610:CDS | 70.0% |
| ATAGCCCCCACCAACGCCGC+CGG | - | chr5_4:1415512-1415531 | None:intergenic | 70.0% | |
| !! | GCTAGTGGTGGTGCCGCCGG+CGG | + | chr5_4:1415493-1415512 | Msa0828610:CDS | 75.0% |
| !! | GCTAGTGGTGGTGCCGCCGG+CGG | + | chr5_4:1415493-1415512 | Msa0828610:CDS | 75.0% |
| !!! | GTGCCGCCGGCGGCGTTGGT+GGG | + | chr5_4:1415503-1415522 | Msa0828610:CDS | 80.0% |
| !!! | TGCCGCCGGCGGCGTTGGTG+GGG | + | chr5_4:1415504-1415523 | Msa0828610:CDS | 80.0% |
| !!! | GTGCCGCCGGCGGCGTTGGT+GGG | + | chr5_4:1415503-1415522 | Msa0828610:CDS | 80.0% |
| !!! | TGCCGCCGGCGGCGTTGGTG+GGG | + | chr5_4:1415504-1415523 | Msa0828610:CDS | 80.0% |
| !!! | GGTGGTGCCGCCGGCGGCGT+TGG | + | chr5_4:1415499-1415518 | Msa0828610:CDS | 85.0% |
| !! | GGTGCCGCCGGCGGCGTTGG+TGG | + | chr5_4:1415502-1415521 | Msa0828610:CDS | 85.0% |
| !!! | GCCGCCGGCGGCGTTGGTGG+GGG | + | chr5_4:1415505-1415524 | Msa0828610:CDS | 85.0% |
| ! | GCCCCCACCAACGCCGCCGG+CGG | - | chr5_4:1415509-1415528 | None:intergenic | 85.0% |
| !!! | GGTGGTGCCGCCGGCGGCGT+TGG | + | chr5_4:1415499-1415518 | Msa0828610:CDS | 85.0% |
| !! | GGTGCCGCCGGCGGCGTTGG+TGG | + | chr5_4:1415502-1415521 | Msa0828610:CDS | 85.0% |
| !!! | GCCGCCGGCGGCGTTGGTGG+GGG | + | chr5_4:1415505-1415524 | Msa0828610:CDS | 85.0% |
| ! | GCCCCCACCAACGCCGCCGG+CGG | - | chr5_4:1415509-1415528 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 1414800 | 1415687 | 1414800 | ID=Msa0828610;Name=Msa0828610 |
| chr5_4 | mRNA | 1414800 | 1415687 | 1414800 | ID=Msa0828610-mRNA-1;Parent=Msa0828610;Name=Msa0828610-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|295 |
| chr5_4 | exon | 1414800 | 1415687 | 1414800 | ID=Msa0828610-mRNA-1:exon:353;Parent=Msa0828610-mRNA-1 |
| chr5_4 | CDS | 1414800 | 1415687 | 1414800 | ID=Msa0828610-mRNA-1:cds;Parent=Msa0828610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
