AlfalfaGEDB | Msa0829420

M. sativa cultivar zhongmu-4 / Msa0829420

KEGG: -
GO: GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0829420	KAG4381011.1	55.385	260	56	2	1	200	1	260	7.08e-85	262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0829420	sp\|Q9LXA5\|LRK91_ARATH	46.667	210	74	3	1	179	412	614	5.85e-52	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0829420	A0A445GPU5	55.385	260	56	2	1	200	391	650	3.92e-80	261

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0829420	MtrunA17_Chr4g0049551	49.038	208	71	2	1	180	438	638	2.61e-63	207
Msa0829420	MtrunA17_Chr8g0367071	48.792	207	71	2	1	179	433	632	3.14e-60	199
Msa0829420	MtrunA17_Chr7g0274661	46.121	232	75	4	1	189	450	674	3.43e-60	199
Msa0829420	MtrunA17_Chr4g0049611	49.107	224	74	3	1	191	420	636	2.64e-59	196
Msa0829420	MtrunA17_Chr4g0049561	48.077	208	73	2	1	180	425	625	1.05e-58	194
Msa0829420	MtrunA17_Chr4g0049601	47.393	211	77	2	1	184	436	639	2.20e-58	194
Msa0829420	MtrunA17_Chr4g0049581	46.479	213	78	2	1	184	428	633	7.72e-58	193
Msa0829420	MtrunA17_Chr7g0274651	44.934	227	89	3	1	198	447	666	3.90e-57	191
Msa0829420	MtrunA17_Chr8g0366931	42.035	226	102	1	1	197	103	328	1.50e-56	182
Msa0829420	MtrunA17_Chr8g0366971	43.602	211	90	1	1	182	153	363	9.52e-56	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0829420	AT5G10530.1	46.667	210	74	3	1	179	412	614	5.94e-53	179
Msa0829420	AT5G65600.1	44.444	216	81	4	1	177	427	642	5.83e-50	172
Msa0829420	AT3G53380.1	38.009	221	103	1	1	187	453	673	2.07e-40	145
Msa0829420	AT5G03140.1	39.896	193	81	2	1	159	450	641	1.24e-38	140
Msa0829420	AT5G55830.1	39.583	192	83	2	1	159	442	633	5.36e-37	136
Msa0829420	AT3G53810.1	38.947	190	85	3	1	159	424	613	2.91e-36	134
Msa0829420	AT4G02420.1	36.508	189	90	2	1	159	427	615	3.37e-36	134
Msa0829420	AT4G02410.1	37.566	189	88	3	1	159	432	620	3.50e-36	134
Msa0829420	AT5G01550.1	39.037	187	86	2	1	159	457	643	2.41e-35	131
Msa0829420	AT5G01560.1	35.841	226	112	3	1	198	440	660	2.56e-35	131

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Find 37 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAAAAGCCTACTAGAGT+GGG	0.595590	5_4:+2318143	Msa0829420:CDS
AATACTAAGCTTGGTGACTT+TGG	0.388561	5_4:+2318288	Msa0829420:CDS
AATCTGGACGAGCATACCAT+AGG	0.623172	5_4:-2318623	None:intergenic
ACAAGATACAACATTAATGG+AGG	0.635270	5_4:+2318168	Msa0829420:CDS
ACTGCTGCCATTCTTCATGT+AGG	0.600976	5_4:-2318212	None:intergenic
ACTTGATAAAGGCTCAGGTT+GGG	0.539729	5_4:-2318818	None:intergenic
AGAATGATGGATCATGGAAA+AGG	0.514798	5_4:+2318318	Msa0829420:CDS
AGCCTAGATTCCCACTTGTA+TGG	0.441164	5_4:+2318120	Msa0829420:CDS
AGCGGGAACAATAGGATATC+TGG	0.325800	5_4:+2318359	Msa0829420:CDS
ATACAACATTAATGGAGGCT+TGG	0.532874	5_4:+2318173	Msa0829420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGATACAACATTAATGG+AGG	+	chr5_4:2318168-2318187	Msa0829420:CDS	30.0%
ATGTAGGTAAAGTAATACTG+AGG	-	chr5_4:2318199-2318218	None:intergenic	30.0%
TACTTTACCTACATGAAGAA+TGG	+	chr5_4:2318205-2318224	Msa0829420:CDS	30.0%
CGAATCAAGTAATGTTATGT+TGG	+	chr5_4:2318254-2318273	Msa0829420:CDS	30.0%
TTGATGAAAATGAAATGGGA+AGG	+	chr5_4:2318586-2318605	Msa0829420:CDS	30.0%
CTAGAAGGATAAATGTATGT+GGG	-	chr5_4:2318740-2318759	None:intergenic	30.0%
ACTAGAAGGATAAATGTATG+TGG	-	chr5_4:2318741-2318760	None:intergenic	30.0%
GTGTAAGAACTACTTGATAA+AGG	-	chr5_4:2318832-2318851	None:intergenic	30.0%
ACAAGATACAACATTAATGG+AGG	+	chr5_4:2318168-2318187	Msa0829420:CDS	30.0%
ATGTAGGTAAAGTAATACTG+AGG	-	chr5_4:2318199-2318218	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	2318108	2318900	2318108	ID=Msa0829420;Name=Msa0829420
chr5_4	mRNA	2318108	2318900	2318108	ID=Msa0829420-mRNA-1;Parent=Msa0829420;Name=Msa0829420-mRNA-1;_AED=0.55;_eAED=0.64;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|201
chr5_4	exon	2318108	2318432	2318108	ID=Msa0829420-mRNA-1:exon:781;Parent=Msa0829420-mRNA-1
chr5_4	exon	2318517	2318679	2318517	ID=Msa0829420-mRNA-1:exon:782;Parent=Msa0829420-mRNA-1
chr5_4	exon	2318783	2318900	2318783	ID=Msa0829420-mRNA-1:exon:783;Parent=Msa0829420-mRNA-1
chr5_4	CDS	2318108	2318432	2318108	ID=Msa0829420-mRNA-1:cds;Parent=Msa0829420-mRNA-1
chr5_4	CDS	2318517	2318679	2318517	ID=Msa0829420-mRNA-1:cds;Parent=Msa0829420-mRNA-1
chr5_4	CDS	2318783	2318900	2318783	ID=Msa0829420-mRNA-1:cds;Parent=Msa0829420-mRNA-1

Gene Sequence

>Msa0829420

ATGTCAAATAGAAGCCTAGATTCCCACTTGTATGGAAGCAAAAGCCTACTAGAGTGGGAAACAAGATACAACATTAATGGAGGCTTGGCCTCAGTATTACTTTACCTACATGAAGAATGGCAGCAGTATGTCATTCACAGGGATATCGAATCAAGTAATGTTATGTTGGATTCAAATTTCAATACTAAGCTTGGTGACTTTGGACTAGCAAGAATGATGGATCATGGAAAAGGATCACAAACAACAATTTTAGCGGGAACAATAGGATATCTGGTTTCTGAATCTGCTACAAGAGGCAAGGCTAGCAGAGAGTCTGATGTGTACCAATGGGTTGGAGAACTCTATGGTATGAGTAATCTAATAGAAGCAGCTGATTCAAGGTTGTGTGAAGATTTTGATGAAAATGAAATGGGAAGGTTGATGATTATTGGCCTATGGTATGCTCGTCCAGATTATACTTTGAGGCCTACAACACAATTAGGCAAGCACTCAACATCTTCTAGTGTTGATGCTCTTAGACTTGCCCAACCTGAGCCTTTATCAAGTAGTTCTTACACTCACTCTTCACAATCCAACACATCTGCAGCTCTTTTGCATACATATTAA

Protein sequence

>Msa0829420

MSNRSLDSHLYGSKSLLEWETRYNINGGLASVLLYLHEEWQQYVIHRDIESSNVMLDSNFNTKLGDFGLARMMDHGKGSQTTILAGTIGYLVSESATRGKASRESDVYQWVGELYGMSNLIEAADSRLCEDFDENEMGRLMIIGLWYARPDYTLRPTTQLGKHSTSSSVDALRLAQPEPLSSSSYTHSSQSNTSAALLHTY*