AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830780 MtrunA17_Chr5g0396901 97.312 893 24 0 1 893 25 917 0.0 1804
Msa0830780 MtrunA17_Chr8g0347481 53.333 600 246 8 1 595 1 571 0.0 635
Msa0830780 MtrunA17_Chr4g0042731 29.773 309 168 15 247 539 142 417 8.22e-25 108
Msa0830780 MtrunA17_Chr4g0075541 31.474 251 130 9 280 525 131 344 1.27e-24 107
Msa0830780 MtrunA17_Chr4g0059121 29.845 258 142 10 282 536 104 325 1.18e-23 103
Msa0830780 MtrunA17_Chr4g0065211 30.556 288 150 11 264 535 1139 1392 2.16e-23 107
Msa0830780 MtrunA17_Chr3g0117731 30.233 258 141 9 282 536 103 324 2.22e-23 102
Msa0830780 MtrunA17_Chr5g0406251 26.104 249 146 8 282 528 337 549 5.12e-23 104
Msa0830780 MtrunA17_Chr4g0047191 27.273 253 145 10 282 531 92 308 3.10e-22 99.4
Msa0830780 MtrunA17_Chr4g0047211 27.273 253 145 10 282 531 87 303 3.85e-22 99.0
Msa0830780 MtrunA17_Chr4g0047201 26.616 263 155 9 282 541 248 475 5.44e-22 100
Msa0830780 MtrunA17_Chr2g0305141 29.373 303 166 12 264 549 1101 1372 7.50e-22 102
Msa0830780 MtrunA17_Chr5g0397931 28.013 307 165 16 246 534 421 689 8.25e-22 101
Msa0830780 MtrunA17_Chr1g0211611 26.908 249 144 8 282 528 343 555 8.88e-22 100
Msa0830780 MtrunA17_Chr2g0282321 25.954 262 158 9 282 541 209 436 7.87e-21 96.7
Msa0830780 MtrunA17_Chr6g0461841 31.618 272 152 8 270 536 1001 1243 8.25e-21 99.0
Msa0830780 MtrunA17_Chr6g0450871 28.137 263 143 10 279 526 118 349 1.14e-20 95.1
Msa0830780 MtrunA17_Chr7g0244621 29.134 254 143 9 278 523 82 306 1.60e-20 94.4
Msa0830780 MtrunA17_Chr4g0059181 26.996 263 146 8 279 526 135 366 1.67e-20 94.7
Msa0830780 MtrunA17_Chr3g0143531 27.092 251 145 9 282 530 67 281 1.94e-20 92.8
Msa0830780 MtrunA17_Chr2g0310761 27.687 307 166 12 242 526 933 1205 2.27e-20 97.4
Msa0830780 MtrunA17_Chr3g0117811 25.779 353 192 13 212 526 17 337 2.43e-20 94.0
Msa0830780 MtrunA17_Chr8g0357611 26.687 326 185 11 222 526 1344 1636 3.12e-20 97.1
Msa0830780 MtrunA17_Chr1g0202101 24.315 292 167 10 245 519 273 527 4.46e-20 95.1
Msa0830780 MtrunA17_Chr4g0072741 29.153 295 163 10 247 524 834 1099 6.48e-20 95.9
Msa0830780 MtrunA17_Chr2g0310781 27.213 305 166 13 242 524 839 1109 4.97e-18 89.7
Msa0830780 MtrunA17_Chr4g0068411 28.772 285 152 13 246 516 458 705 5.68e-18 89.0
Msa0830780 MtrunA17_Chr6g0449241 26.316 304 172 12 242 526 20 290 1.25e-17 85.5
Msa0830780 MtrunA17_Chr2g0294351 27.857 280 145 14 265 528 485 723 8.52e-17 85.5
Msa0830780 MtrunA17_Chr3g0090261 25.101 247 146 9 280 523 126 336 1.35e-16 82.8
Msa0830780 MtrunA17_Chr3g0116981 25.413 303 169 11 242 523 20 286 1.42e-16 82.4
Msa0830780 MtrunA17_Chr1g0196631 28.629 248 139 7 289 530 955 1170 1.81e-16 84.7
Msa0830780 MtrunA17_Chr5g0403721 26.531 245 150 9 279 523 28 242 4.05e-16 81.3
Msa0830780 MtrunA17_Chr1g0171571 28.696 230 115 9 326 526 106 315 5.34e-16 82.4
Msa0830780 MtrunA17_Chr5g0443471 27.881 269 156 11 280 541 205 442 9.29e-16 81.3
Msa0830780 MtrunA17_Chr5g0394681 27.461 193 111 6 334 526 201 364 4.52e-15 78.2
Msa0830780 MtrunA17_Chr1g0191171 24.252 301 173 13 246 530 687 948 5.45e-15 79.7
Msa0830780 MtrunA17_Chr5g0427651 25.581 301 165 15 247 528 645 905 1.09e-14 78.6
Msa0830780 MtrunA17_Chr1g0157231 25.789 190 105 6 282 470 188 342 1.93e-14 76.3
Msa0830780 MtrunA17_Chr8g0380551 28.226 248 136 11 282 519 266 481 3.55e-14 76.3
Msa0830780 MtrunA17_Chr1g0179331 24.497 298 172 12 247 528 554 814 8.09e-14 75.9
Msa0830780 MtrunA17_Chr3g0105891 25.820 244 142 8 285 523 371 580 1.29e-13 74.7
Msa0830780 MtrunA17_Chr5g0437741 29.694 229 114 9 282 509 536 718 1.80e-13 74.7
Msa0830780 MtrunA17_Chr4g0000431 23.288 292 182 10 243 521 19 281 2.29e-13 74.3
Msa0830780 MtrunA17_Chr1g0209511 26.766 269 150 11 277 524 352 594 5.88e-13 72.8
Msa0830780 MtrunA17_Chr3g0115171 26.778 239 137 8 277 513 322 524 1.51e-12 71.2
Msa0830780 MtrunA17_Chr1g0171451 28.000 275 149 13 265 526 433 671 1.80e-12 71.2
Msa0830780 MtrunA17_Chr4g0051191 27.273 242 134 8 277 514 203 406 3.86e-12 69.3
Msa0830780 MtrunA17_Chr6g0450571 23.675 283 178 9 243 514 11 266 6.30e-12 69.3
Msa0830780 MtrunA17_Chr8g0359691 26.733 303 147 16 255 523 674 935 7.03e-12 69.7
Msa0830780 MtrunA17_Chr4g0053411 24.702 336 170 14 239 523 458 761 8.04e-12 69.3
Msa0830780 MtrunA17_Chr2g0280191 26.190 252 131 11 241 469 676 895 1.24e-11 68.9
Msa0830780 MtrunA17_Chr1g0209521 24.752 303 166 13 255 527 368 638 1.83e-11 68.2
Msa0830780 MtrunA17_Chr8g0384301 26.293 232 133 8 285 514 349 544 3.27e-11 67.4
Msa0830780 MtrunA17_Chr4g0041201 26.316 285 160 13 257 531 559 803 4.53e-11 67.0
Msa0830780 MtrunA17_Chr5g0423121 25.769 260 144 11 277 521 377 602 5.61e-11 66.2
Msa0830780 MtrunA17_Chr7g0276571 26.592 267 138 12 280 523 457 688 6.50e-11 66.2
Msa0830780 MtrunA17_Chr3g0111551 26.728 217 122 8 285 499 113 294 7.69e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830780 AT1G64300.2 52.510 777 297 14 1 767 1 715 0.0 785
Msa0830780 AT1G64300.1 52.510 777 297 14 1 767 1 715 0.0 785
Msa0830780 AT5G41730.2 52.291 742 295 11 1 726 1 699 0.0 764
Msa0830780 AT5G41730.1 52.291 742 295 11 1 726 1 699 0.0 764
Msa0830780 AT1G01450.1 53.590 390 151 7 211 594 2 367 1.45e-131 403
Msa0830780 AT1G14000.1 31.392 309 165 17 247 540 161 437 1.82e-24 107
Msa0830780 AT1G62400.1 30.645 248 131 8 280 523 130 340 5.47e-24 105
Msa0830780 AT3G46930.2 25.959 339 198 10 224 545 179 481 7.60e-24 107
Msa0830780 AT3G46930.1 25.959 339 198 10 224 545 144 446 1.02e-23 106
Msa0830780 AT3G46920.2 28.378 370 191 16 192 530 816 1142 1.09e-22 105
Msa0830780 AT3G46920.1 28.378 370 191 16 192 530 750 1076 1.18e-22 105
Msa0830780 AT5G58950.1 27.451 255 140 11 276 523 247 463 1.56e-21 100
Msa0830780 AT2G35050.1 28.618 304 166 14 242 526 968 1239 4.23e-21 100
Msa0830780 AT2G35050.2 28.618 304 166 14 242 526 968 1239 4.23e-21 100
Msa0830780 AT5G01850.1 27.642 246 145 7 282 523 63 279 1.15e-20 94.7
Msa0830780 AT4G38470.2 25.794 252 149 8 282 531 332 547 2.81e-20 96.3
Msa0830780 AT5G57610.1 27.723 303 173 10 247 532 780 1053 3.88e-20 97.1
Msa0830780 AT5G01850.2 29.907 214 120 6 314 523 116 303 1.10e-19 92.4
Msa0830780 AT4G35780.1 24.590 244 146 8 282 523 334 541 1.33e-19 94.4
Msa0830780 AT4G38470.1 25.506 247 146 8 282 526 332 542 1.63e-19 94.0
Msa0830780 AT5G50000.1 26.616 263 147 8 279 526 128 359 1.84e-19 92.0
Msa0830780 AT1G04700.1 30.380 237 137 6 289 524 821 1030 2.27e-19 94.4
Msa0830780 AT1G04700.2 30.380 237 137 6 289 524 821 1030 2.27e-19 94.4
Msa0830780 AT3G01490.1 28.244 262 144 11 279 526 154 385 2.28e-19 92.0
Msa0830780 AT2G17700.1 26.000 250 145 10 282 528 328 540 2.86e-19 93.2
Msa0830780 AT1G79570.2 26.403 303 175 10 242 526 958 1230 3.57e-19 94.0
Msa0830780 AT1G79570.1 26.403 303 175 10 242 526 958 1230 3.57e-19 94.0
Msa0830780 AT1G16270.1 27.143 280 167 8 258 533 890 1136 4.03e-19 93.6
Msa0830780 AT1G16270.2 27.143 280 167 8 258 533 890 1136 4.03e-19 93.6
Msa0830780 AT1G16270.3 27.143 280 167 8 258 533 890 1136 4.03e-19 93.6
Msa0830780 AT3G24715.1 28.873 284 172 9 243 522 842 1099 4.40e-19 93.6
Msa0830780 AT3G24715.3 28.873 284 172 9 243 522 842 1099 4.40e-19 93.6
Msa0830780 AT3G24715.2 28.873 284 172 9 243 522 842 1099 4.40e-19 93.6
Msa0830780 AT4G31170.7 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.6 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.5 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.1 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.2 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.3 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT4G31170.8 27.092 251 136 9 280 523 175 385 5.92e-19 90.9
Msa0830780 AT3G50730.1 25.403 248 156 8 277 523 77 296 2.20e-18 88.6
Msa0830780 AT3G06630.2 28.283 297 160 15 247 528 433 691 2.71e-18 90.5
Msa0830780 AT4G23050.2 27.815 302 158 14 246 528 466 726 2.73e-18 90.5
Msa0830780 AT4G23050.1 27.815 302 158 14 246 528 465 725 2.77e-18 90.5
Msa0830780 AT5G66710.1 25.641 273 163 8 278 544 113 351 4.37e-18 88.2
Msa0830780 AT2G40860.4 30.964 197 98 6 340 514 24 204 9.53e-18 88.2
Msa0830780 AT5G49470.3 27.857 280 145 14 265 528 510 748 1.06e-17 88.6
Msa0830780 AT5G49470.4 27.857 280 145 14 265 528 484 722 1.22e-17 88.6
Msa0830780 AT2G40860.2 30.144 209 108 6 340 526 122 314 1.39e-17 88.2
Msa0830780 AT3G27560.1 27.600 250 146 10 282 526 71 290 1.47e-17 85.9
Msa0830780 AT5G11850.1 25.503 298 171 12 246 529 607 867 1.53e-17 88.2
Msa0830780 AT2G40860.1 30.964 197 98 6 340 514 122 302 1.55e-17 87.8
Msa0830780 AT5G49470.7 27.857 280 145 14 265 528 383 621 1.71e-17 87.8
Msa0830780 AT2G40860.3 30.964 197 98 6 340 514 122 302 1.72e-17 87.8
Msa0830780 AT5G49470.1 27.857 280 145 14 265 528 223 461 2.25e-17 86.7
Msa0830780 AT5G40540.1 27.668 253 148 11 276 523 64 286 2.35e-17 85.1
Msa0830780 AT2G24360.1 26.050 238 143 7 286 523 180 384 2.43e-17 85.9
Msa0830780 AT3G22750.1 24.528 265 151 8 279 526 120 352 3.75e-17 85.1
Msa0830780 AT3G57830.3 27.737 274 162 10 279 527 398 660 5.85e-17 86.3
Msa0830780 AT3G57830.1 27.737 274 162 10 279 527 398 660 5.85e-17 86.3
Msa0830780 AT4G18950.2 28.571 252 138 10 282 526 200 416 9.52e-17 84.3
Msa0830780 AT4G18950.1 28.571 252 138 10 282 526 200 416 1.07e-16 84.3
Msa0830780 AT3G63260.1 24.060 266 155 8 279 526 129 365 1.10e-16 83.6
Msa0830780 AT4G24480.1 26.073 303 166 13 247 528 668 933 1.54e-16 85.1
Msa0830780 AT2G42290.1 28.731 268 159 9 282 527 389 646 1.92e-16 84.3
Msa0830780 AT5G50180.1 27.236 246 145 9 282 523 65 280 2.04e-16 82.4
Msa0830780 AT1G67890.1 27.273 275 152 13 265 528 506 743 2.09e-16 84.7
Msa0830780 AT5G40540.3 29.439 214 120 9 314 523 3 189 3.68e-16 79.7
Msa0830780 AT4G24480.2 25.589 297 170 13 247 528 668 928 4.71e-16 83.6
Msa0830780 AT4G24480.3 25.589 297 170 13 247 528 668 928 5.91e-16 83.2
Msa0830780 AT5G40540.2 29.439 214 120 9 314 523 24 210 7.35e-16 79.3
Msa0830780 AT3G06620.1 27.798 277 149 13 265 528 513 751 7.84e-16 82.8
Msa0830780 AT3G50720.1 26.848 257 159 9 276 531 88 316 1.63e-15 80.1
Msa0830780 AT3G58760.1 29.000 300 156 18 247 526 165 427 6.68e-15 79.0
Msa0830780 AT3G58760.3 29.000 300 156 18 247 526 228 490 8.60e-15 79.0
Msa0830780 AT3G58760.5 29.000 300 156 18 247 526 228 490 8.60e-15 79.0
Msa0830780 AT3G06630.1 28.261 276 145 15 247 507 433 670 8.90e-15 79.0
Msa0830780 AT4G14780.1 26.316 190 109 5 339 526 178 338 1.04e-14 77.4
Msa0830780 AT3G46930.4 24.715 263 149 8 224 473 179 405 3.26e-14 76.3
Msa0830780 AT3G46930.3 24.715 263 149 8 224 473 179 405 3.44e-14 76.3
Msa0830780 AT2G31800.1 25.987 304 177 14 243 530 188 459 3.99e-14 76.3
Msa0830780 AT3G46930.5 24.715 263 149 8 224 473 144 370 5.60e-14 75.5
Msa0830780 AT3G46930.6 24.715 263 149 8 224 473 83 309 7.38e-14 74.3
Msa0830780 AT3G58640.1 28.205 273 146 13 257 519 565 797 8.96e-14 76.3
Msa0830780 AT3G58640.2 28.205 273 146 13 257 519 565 797 8.96e-14 76.3
Msa0830780 AT1G50240.3 24.211 285 161 12 243 513 1 244 2.08e-13 75.1
Msa0830780 AT1G50240.2 24.211 285 161 12 243 513 1 244 2.08e-13 75.1
Msa0830780 AT5G66850.1 25.703 249 153 10 283 530 394 611 3.25e-13 74.3
Msa0830780 AT5G01890.1 23.743 358 209 13 191 527 646 960 3.44e-13 74.3
Msa0830780 AT5G66850.2 25.703 249 153 10 283 530 394 611 4.23e-13 73.9
Msa0830780 AT3G06630.4 28.571 238 120 13 247 470 433 634 4.89e-13 73.6
Msa0830780 AT3G06630.3 28.571 238 120 13 247 470 433 634 4.89e-13 73.6
Msa0830780 AT3G06630.5 28.571 238 120 13 247 470 433 634 4.89e-13 73.6
Msa0830780 AT3G59830.1 27.586 290 162 13 247 519 193 451 5.14e-13 72.8
Msa0830780 AT3G06630.6 28.571 238 120 13 247 470 349 550 5.60e-13 73.2
Msa0830780 AT5G18700.1 25.847 236 142 10 285 520 46 248 7.89e-13 73.2
Msa0830780 AT1G67890.3 27.907 258 130 15 265 507 506 722 3.25e-12 70.9
Msa0830780 AT1G67890.2 27.907 258 130 15 265 507 506 722 3.25e-12 70.9
Msa0830780 AT1G67890.4 27.907 258 130 15 265 507 378 594 4.24e-12 70.5
Msa0830780 AT2G31010.1 25.685 292 159 13 257 538 531 774 5.09e-12 70.5
Msa0830780 AT2G31010.2 25.685 292 159 13 257 538 531 774 5.09e-12 70.5
Msa0830780 AT3G53930.2 27.586 261 134 13 247 491 19 240 6.29e-12 70.1
Msa0830780 AT3G53930.1 27.586 261 134 13 247 491 19 240 6.67e-12 70.1
Msa0830780 AT5G49470.5 28.182 220 104 12 265 469 510 690 9.86e-12 69.3
Msa0830780 AT5G49470.6 28.182 220 104 12 265 469 510 690 1.08e-11 69.3
Msa0830780 AT2G42640.1 28.044 271 141 13 265 524 547 774 1.15e-11 69.3
Msa0830780 AT2G42640.4 28.044 271 141 13 265 524 509 736 1.39e-11 68.9
Msa0830780 AT5G38210.3 24.739 287 162 10 280 544 391 645 1.69e-11 68.6
Msa0830780 AT5G38210.2 25.175 286 162 10 280 544 409 663 1.75e-11 68.6
Msa0830780 AT5G07140.1 26.014 296 177 13 242 528 321 583 2.79e-11 67.8
Msa0830780 AT3G01490.2 27.632 228 122 10 279 492 154 352 3.19e-11 66.6
Msa0830780 AT4G08480.1 26.172 256 147 9 261 514 529 744 3.25e-11 67.8
Msa0830780 AT1G69270.1 25.820 244 144 10 270 510 291 500 4.83e-11 67.0
Msa0830780 AT5G40540.4 28.061 196 114 8 276 469 64 234 5.18e-11 65.1
Msa0830780 AT5G38210.1 25.175 286 162 10 280 544 397 651 5.51e-11 67.0
Msa0830780 AT4G08500.1 26.336 262 153 9 255 514 353 576 6.00e-11 66.6
Msa0830780 AT3G02880.1 31.500 200 99 9 272 467 375 540 6.09e-11 66.6
Msa0830780 AT3G19700.1 28.497 193 105 8 282 469 730 894 7.65e-11 66.6

Find 163 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCCTGCTTTGATATTT+TGG 0.080066 5_4:-3804673 None:intergenic
CTCTCAGATTCTGAGACTTT+TGG 0.146039 5_4:-3805507 None:intergenic
ATCAAACTCACAAGATATTT+TGG 0.164131 5_4:-3804719 None:intergenic
TTGATTCCCTTTGTTAATAT+TGG 0.196770 5_4:-3805535 None:intergenic
CAAGCAAAAGTTGTTGGATT+TGG 0.204645 5_4:+3804392 Msa0830780:CDS
GAGATTTGGCAAACAATATT+TGG 0.205668 5_4:+3803719 Msa0830780:CDS
GATCCTAACAAAACACTAAT+TGG 0.207436 5_4:-3803948 None:intergenic
AATTGCTTGCAAATTTCTTT+TGG 0.212048 5_4:-3803744 None:intergenic
TCTCCTCACTTGGTAATCTT+TGG 0.230174 5_4:-3803970 None:intergenic
GCTTATAAAGTTGTTGAAAA+AGG 0.240086 5_4:+3804992 Msa0830780:CDS
GTGTCATCAGAAATTGATTT+TGG 0.241755 5_4:-3805187 None:intergenic
GTAGGATATTACAAGGATTA+AGG 0.243595 5_4:-3804337 None:intergenic
TATTCCTACTATAGATAATA+AGG 0.252638 5_4:+3805048 Msa0830780:CDS
AAGAGATTAACCCTATAATT+TGG 0.257480 5_4:+3804486 Msa0830780:CDS
GTCCTCTTAGAGAGCTTTCC+AGG 0.263161 5_4:+3803436 Msa0830780:CDS
AACTGACCTTGGTCTTTCTT+TGG 0.265277 5_4:-3805277 None:intergenic
GGTTACCAGATCTTTAATTA+TGG 0.266121 5_4:-3805161 None:intergenic
CATAGATATTGCAATATGTT+TGG 0.282076 5_4:-3804119 None:intergenic
TCAGGTGCATACCAAATTAT+AGG 0.292831 5_4:-3804497 None:intergenic
CTGGTTTCTCATCTATTTGT+AGG 0.294229 5_4:+3804777 Msa0830780:CDS
TTTGTCTTTAACCTGTTAAA+TGG 0.297516 5_4:-3805660 None:intergenic
CGGCACATTGGTGAGGTTCT+TGG 0.303933 5_4:+3803249 Msa0830780:CDS
TATGGTCATGTCTCAGATTA+AGG 0.304997 5_4:+3805987 Msa0830780:CDS
TGGAAGTCTAAAAGCGCTTA+TGG 0.306735 5_4:+3803269 Msa0830780:CDS
TGAAACATGGCAGCATCTTC+TGG 0.314429 5_4:-3805817 None:intergenic
AAAAGAAATTTGCAAGCAAT+TGG 0.319977 5_4:+3803746 Msa0830780:CDS
AATATACATTAAGCATTGTT+TGG 0.325498 5_4:+3803476 Msa0830780:CDS
GGATTGTCATCTGTTGAAAA+TGG 0.333696 5_4:+3804413 Msa0830780:CDS
ATTCTTTGAAGAAGTGAGTT+TGG 0.334226 5_4:-3803832 None:intergenic
GTCCTTTGATTGCTCACATA+TGG 0.339488 5_4:-3805903 None:intergenic
AGCATTGTGAGGATGCAAAA+AGG 0.341134 5_4:+3805753 Msa0830780:CDS
CATTATCTGGTCGGGTTTCA+AGG 0.346406 5_4:+3805421 Msa0830780:CDS
TTGACACGTCTTATTCTTGT+TGG 0.355333 5_4:-3805717 None:intergenic
GAAATTGATGAATGGTAATT+CGG 0.363355 5_4:+3803884 Msa0830780:CDS
TCGGGTTTCAAGGACAAATA+AGG 0.364030 5_4:+3805431 Msa0830780:CDS
TTTAAGGAAATTCAATGGTT+AGG 0.370820 5_4:+3804014 Msa0830780:CDS
GAGACCAATCACCATTTAAC+AGG 0.371640 5_4:+3805649 Msa0830780:CDS
ATTGTTTGGATTCAAAAGAT+TGG 0.378122 5_4:+3803490 Msa0830780:CDS
GTGAGAAAGTGATAACAAAT+TGG 0.378799 5_4:-3804096 None:intergenic
TTCTTTGGCTTCATTTGTGA+TGG 0.379395 5_4:-3805262 None:intergenic
TTAACCTGTTAAATGGTGAT+TGG 0.382051 5_4:-3805653 None:intergenic
ATAGATATTGCAATATGTTT+GGG 0.387928 5_4:-3804118 None:intergenic
AGTTCAAGCTGATTTAGTTC+AGG 0.389760 5_4:-3804857 None:intergenic
ATCTCATGCTTCAAATGGCC+AGG 0.399868 5_4:+3804273 Msa0830780:CDS
TTGAAGACAGAACTACAAAA+TGG 0.399911 5_4:+3803400 Msa0830780:CDS
ATTGTAACATTCTTCTTTGA+CGG 0.401100 5_4:-3805232 None:intergenic
TTGGATTCAAAAGATTGGTC+TGG 0.401687 5_4:+3803495 Msa0830780:CDS
TGAGGAGAAGATTGGGAAGG+GGG 0.403016 5_4:+3803985 Msa0830780:CDS
GGGTTAATCTCTTCACCAAT+TGG 0.403263 5_4:-3804476 None:intergenic
CCATATGTTGTTCTTACATA+AGG 0.409101 5_4:-3805969 None:intergenic
TACCAAGTGAGGAGAAGATT+GGG 0.409714 5_4:+3803978 Msa0830780:CDS
ACAGTAGCCACATCCTTTGT+TGG 0.413590 5_4:-3805085 None:intergenic
TCATTACCACCAACATTATC+TGG 0.424357 5_4:+3805408 Msa0830780:CDS
ATGCTGCCATGTTTCAGATA+TGG 0.424537 5_4:+3805824 Msa0830780:CDS
GAGAATGCTGGGGAGATGTC+AGG 0.427765 5_4:+3803609 Msa0830780:CDS
TGGATTCAAAAGATTGGTCT+GGG 0.432597 5_4:+3803496 Msa0830780:CDS
TTATAAGCAAACATTTCATA+AGG 0.434328 5_4:-3804977 None:intergenic
CATCTTCACAAACTGTGCTT+TGG 0.436780 5_4:-3805129 None:intergenic
TGCATCCATAATTAAAGATC+TGG 0.439192 5_4:+3805156 Msa0830780:CDS
TTGTAACATTCTTCTTTGAC+GGG 0.441892 5_4:-3805231 None:intergenic
CTCAAAGGGCTCAATGCTAA+TGG 0.444928 5_4:-3805945 None:intergenic
CTCAAAGGACTCAATGGAAA+TGG 0.446507 5_4:-3805879 None:intergenic
TTCCCAATCTTCTCCTCACT+TGG 0.447928 5_4:-3803980 None:intergenic
ATTCCTACTATAGATAATAA+GGG 0.450157 5_4:+3805049 Msa0830780:CDS
TGAAAATGATTATCCTCAAA+AGG 0.452553 5_4:-3804635 None:intergenic
GCAAGCAATTGGAGAATGCT+TGG 0.459665 5_4:+3803757 Msa0830780:CDS
GAGAACAAAATCTGTCTCCT+TGG 0.464084 5_4:-3804233 None:intergenic
GGAGATGTCAGGGTTGGATC+AGG 0.464317 5_4:+3803620 Msa0830780:CDS
TTACCAAGTGAGGAGAAGAT+TGG 0.469923 5_4:+3803977 Msa0830780:CDS
AGGAATTTAAGGAAATTCAA+TGG 0.476317 5_4:+3804009 Msa0830780:CDS
ACCACCAACATTATCTGGTC+GGG 0.478543 5_4:+3805413 Msa0830780:CDS
CACCGCCAATGAGTCCTTCA+AGG 0.481111 5_4:+3805787 Msa0830780:CDS
AAAGCCGATGCATATAGCTT+TGG 0.483467 5_4:+3804578 Msa0830780:CDS
CAGGTGCATACCAAATTATA+GGG 0.486379 5_4:-3804496 None:intergenic
TCACCAACACATAATCCAAT+TGG 0.489553 5_4:+3804461 Msa0830780:CDS
TACAAGGATTAAGGTTTCCA+TGG 0.498240 5_4:-3804328 None:intergenic
TATGGACTCAAAGGACTCAA+TGG 0.498751 5_4:-3805885 None:intergenic
TTCACCTTCTTTGAATACCC+TGG 0.500775 5_4:-3803454 None:intergenic
CTACCCTTATTATCTATAGT+AGG 0.503856 5_4:-3805052 None:intergenic
ACCAACCAAAATATCAAAGC+AGG 0.507591 5_4:+3804668 Msa0830780:CDS
GTTCTTACATAAGGACTCAA+AGG 0.508350 5_4:-3805960 None:intergenic
ATTGAAGCGATCGAGAATGC+TGG 0.508806 5_4:+3803597 Msa0830780:CDS
CTTTCCAGGGTATTCAAAGA+AGG 0.511780 5_4:+3803450 Msa0830780:CDS
TCTAGCTCAGTTAAAACCTC+AGG 0.514317 5_4:-3804515 None:intergenic
TTGAAGCGATCGAGAATGCT+GGG 0.515187 5_4:+3803598 Msa0830780:CDS
ACTGATCCGTCTCAGCGTCC+TGG 0.518950 5_4:+3804758 Msa0830780:CDS
CTTCTGGTGTATGACCTTGA+AGG 0.519264 5_4:-3805801 None:intergenic
AGAATGCTTGGAGAGAAGAT+AGG 0.519476 5_4:+3803769 Msa0830780:CDS
AGTTGATGAACAAGGATTTG+TGG 0.524686 5_4:+3804186 Msa0830780:CDS
TGCTGGGGAGATGTCAGGGT+TGG 0.526191 5_4:+3803614 Msa0830780:CDS
GGAAATCCAATATTAACAAA+GGG 0.528711 5_4:+3805529 Msa0830780:CDS
CCTTATGTAAGAACAACATA+TGG 0.529072 5_4:+3805969 Msa0830780:CDS
CTATAACCCCAGTTAAAAGA+AGG 0.532741 5_4:+3805481 Msa0830780:CDS
AGGAAATCCAATATTAACAA+AGG 0.532942 5_4:+3805528 Msa0830780:CDS
ATATTATATGTCCTCTCCAC+AGG 0.535682 5_4:-3804935 None:intergenic
TATGACCTTGAAGGACTCAT+TGG 0.538589 5_4:-3805792 None:intergenic
CAAGAAAATATGATGTGGAA+TGG 0.539842 5_4:+3803673 Msa0830780:CDS
ACACAATCGCAGATGAGATA+AGG 0.544064 5_4:+3803364 Msa0830780:CDS
GTGCCGGAATGGAACAGCTC+CGG 0.546196 5_4:+3803229 None:intergenic
TTTGTTCTCTATACCTGTGG+TGG 0.547282 5_4:+3804247 Msa0830780:CDS
GTAGATTGTTGTGACATTGA+AGG 0.548073 5_4:+3804893 Msa0830780:CDS
ATGCTTGGAGAGAAGATAGG+TGG 0.548742 5_4:+3803772 Msa0830780:CDS
TATAATTTGGTATGCACCTG+AGG 0.550991 5_4:+3804499 Msa0830780:CDS
TTCTTACATAAGGACTCAAA+GGG 0.551714 5_4:-3805959 None:intergenic
GGTTGATCTCATGCTTCAAA+TGG 0.555778 5_4:+3804268 Msa0830780:CDS
AACATATTGCAATATCTATG+TGG 0.560041 5_4:+3804122 Msa0830780:CDS
ACCCTGGAAAGCTCTCTAAG+AGG 0.560256 5_4:-3803438 None:intergenic
ATGGAACAGCTCCGGCACAT+TGG 0.561500 5_4:+3803237 Msa0830780:CDS
AGCAATCAAAGGACTAGAAG+AGG 0.562315 5_4:+3805912 Msa0830780:CDS
GGCGAGCGATATGGAAACAA+AGG 0.564210 5_4:-3804698 None:intergenic
CAAGAACCTCACCAATGTGC+CGG 0.564531 5_4:-3803248 None:intergenic
GTGGAGATATTCAATGCCCC+TGG 0.567677 5_4:-3804291 None:intergenic
TCAATGTCACAACAATCTAC+AGG 0.568956 5_4:-3804890 None:intergenic
GACCTTGAAGGACTCATTGG+CGG 0.570717 5_4:-3805789 None:intergenic
TTGTTGAAGAAATTGATGAA+TGG 0.570718 5_4:+3803876 Msa0830780:CDS
TCACCAATTGGATTATGTGT+TGG 0.571772 5_4:-3804464 None:intergenic
GAGAAACCAGGACGCTGAGA+CGG 0.572704 5_4:-3804764 None:intergenic
TACCACCAACATTATCTGGT+CGG 0.572730 5_4:+3805412 Msa0830780:CDS
GTCTGAGCCAACAAAGGATG+TGG 0.574953 5_4:+3805078 Msa0830780:CDS
TTGCTCACATATGGACTCAA+AGG 0.582014 5_4:-3805894 None:intergenic
TCTCATGCTTCAAATGGCCA+GGG 0.583448 5_4:+3804274 Msa0830780:CDS
AGTGAGGAGAAGATTGGGAA+GGG 0.587219 5_4:+3803983 Msa0830780:CDS
TCGATCGCTTCAATAACCGC+AGG 0.587690 5_4:-3803588 None:intergenic
GTGAGGAGAAGATTGGGAAG+GGG 0.591731 5_4:+3803984 Msa0830780:CDS
GAGGCTCATAGAAGCACTCA+AGG 0.595114 5_4:+3803794 Msa0830780:CDS
GTCCATATGTGAGCAATCAA+AGG 0.596259 5_4:+3805901 Msa0830780:CDS
CATACCAAAGCTATATGCAT+CGG 0.599646 5_4:-3804582 None:intergenic
AAAGCTAGAAACTCACAAGA+AGG 0.600879 5_4:+3804362 Msa0830780:CDS
AACTTGATGTCAATGATGAC+TGG 0.601724 5_4:-3805458 None:intergenic
AGAATGCTGGGGAGATGTCA+GGG 0.601811 5_4:+3803610 Msa0830780:CDS
TGAGAGAGAATTGTGGTCCA+AGG 0.604253 5_4:+3804216 Msa0830780:CDS
TCCTCTTAGAGAGCTTTCCA+GGG 0.606681 5_4:+3803437 Msa0830780:CDS
TTTCTCTGAGTACTTACAAG+AGG 0.613541 5_4:-3804558 None:intergenic
ACCCGACCAGATAATGTTGG+TGG 0.618092 5_4:-3805414 None:intergenic
AGCATGAGATCAACCACCAC+AGG 0.618436 5_4:-3804260 None:intergenic
CTTGGAGAGAAGATAGGTGG+AGG 0.618932 5_4:+3803775 Msa0830780:CDS
AAAATATCAAAGCAGGAGAG+AGG 0.620693 5_4:+3804675 Msa0830780:CDS
GAAACCCGACCAGATAATGT+TGG 0.622199 5_4:-3805417 None:intergenic
CTACAAATAGATGAGAAACC+AGG 0.623694 5_4:-3804776 None:intergenic
AACTATCCATATCTGAAACA+TGG 0.625924 5_4:-3805830 None:intergenic
ACAGTAATGATAAGGTATTG+TGG 0.632731 5_4:+3803925 Msa0830780:CDS
ATGTCACAACAATCTACAGG+TGG 0.639302 5_4:-3804887 None:intergenic
ATGCTAGAGTGAATATGTCG+TGG 0.640538 5_4:-3803338 None:intergenic
AGGATTGATCAAAACATACT+CGG 0.640765 5_4:-3804837 None:intergenic
CAAAAGTCTCAGAATCTGAG+AGG 0.650694 5_4:+3805508 Msa0830780:CDS
TCTCTAAGAGGACATTCAAG+AGG 0.651164 5_4:-3803426 None:intergenic
ACAGCTCCGGCACATTGGTG+AGG 0.651948 5_4:+3803242 Msa0830780:CDS
GCTTGCAAGAAAATATGATG+TGG 0.653459 5_4:+3803668 Msa0830780:CDS
TAGTGAGTCTGAGCCAACAA+AGG 0.653550 5_4:+3805072 Msa0830780:CDS
CGATCGCTTCAATAACCGCA+GGG 0.654532 5_4:-3803587 None:intergenic
AAGTGAGGAGAAGATTGGGA+AGG 0.655591 5_4:+3803982 Msa0830780:CDS
AATTGGATTATGTGTTGGTG+AGG 0.655784 5_4:-3804459 None:intergenic
TGTGACGGAGTTGATGAACA+AGG 0.656381 5_4:+3804178 Msa0830780:CDS
CTCATGCTTCAAATGGCCAG+GGG 0.668271 5_4:+3804275 Msa0830780:CDS
GATCCAAAGATTACCAAGTG+AGG 0.673638 5_4:+3803967 Msa0830780:CDS
ATGAAGCCAAAGAAAGACCA+AGG 0.681190 5_4:+3805271 Msa0830780:CDS
TGTAACATTCTTCTTTGACG+GGG 0.687811 5_4:-3805230 None:intergenic
GTACTAACAACAGCATTGTG+AGG 0.690491 5_4:+3805742 Msa0830780:CDS
GATAGTTCTTTGAAGATACG+AGG 0.692687 5_4:+3805846 Msa0830780:CDS
TGTCACAACAATCTACAGGT+GGG 0.697110 5_4:-3804886 None:intergenic
TGAAGCGATCGAGAATGCTG+GGG 0.704654 5_4:+3803599 Msa0830780:CDS
TTTGCTTTGCTATTTCCCTG+CGG 0.707457 5_4:+3803572 Msa0830780:CDS
ACATACATGAGAGAGAATTG+TGG 0.732943 5_4:+3804209 Msa0830780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATATATATATAGC+AGG - chr5_4:3805330-3805349 None:intergenic 10.0%
!!! AATATACATTAAGCATTGTT+TGG + chr5_4:3803476-3803495 Msa0830780:CDS 20.0%
!! ATAGATATTGCAATATGTTT+GGG - chr5_4:3804121-3804140 None:intergenic 20.0%
!! TTATAAGCAAACATTTCATA+AGG - chr5_4:3804980-3804999 None:intergenic 20.0%
!! CTTATAAAGTTGTTGAAAAA+GGG + chr5_4:3804993-3805012 Msa0830780:CDS 20.0%
!! TATTCCTACTATAGATAATA+AGG + chr5_4:3805048-3805067 Msa0830780:CDS 20.0%
!! ATTCCTACTATAGATAATAA+GGG + chr5_4:3805049-3805068 Msa0830780:CDS 20.0%
!!! TCAGTTAGAAAAAAAGTATA+TGG + chr5_4:3805582-3805601 Msa0830780:CDS 20.0%
! ATTGTTTGGATTCAAAAGAT+TGG + chr5_4:3803490-3803509 Msa0830780:CDS 25.0%
!! AATTGCTTGCAAATTTCTTT+TGG - chr5_4:3803747-3803766 None:intergenic 25.0%
! AAAAGAAATTTGCAAGCAAT+TGG + chr5_4:3803746-3803765 Msa0830780:CDS 25.0%
! TTGTTGAAGAAATTGATGAA+TGG + chr5_4:3803876-3803895 Msa0830780:CDS 25.0%
! GAAATTGATGAATGGTAATT+CGG + chr5_4:3803884-3803903 Msa0830780:CDS 25.0%
! TCACAAAAACAGTAATGATA+AGG + chr5_4:3803917-3803936 Msa0830780:CDS 25.0%
! AGGAATTTAAGGAAATTCAA+TGG + chr5_4:3804009-3804028 Msa0830780:CDS 25.0%
! TTTAAGGAAATTCAATGGTT+AGG + chr5_4:3804014-3804033 Msa0830780:CDS 25.0%
! CATAGATATTGCAATATGTT+TGG - chr5_4:3804122-3804141 None:intergenic 25.0%
! AACATATTGCAATATCTATG+TGG + chr5_4:3804122-3804141 Msa0830780:CDS 25.0%
!!! TATTTTCAAGCAAAAGTTGT+TGG + chr5_4:3804386-3804405 Msa0830780:CDS 25.0%
! AAGAGATTAACCCTATAATT+TGG + chr5_4:3804486-3804505 Msa0830780:CDS 25.0%
! TGAAAATGATTATCCTCAAA+AGG - chr5_4:3804638-3804657 None:intergenic 25.0%
!! TTTGAGGATAATCATTTTCA+AGG + chr5_4:3804638-3804657 Msa0830780:CDS 25.0%
!! TTGAGGATAATCATTTTCAA+GGG + chr5_4:3804639-3804658 Msa0830780:CDS 25.0%
!! ATCAAACTCACAAGATATTT+TGG - chr5_4:3804722-3804741 None:intergenic 25.0%
! TGAGTTTGATCAAAAAATGT+TGG + chr5_4:3804732-3804751 Msa0830780:CDS 25.0%
! GCTTATAAAGTTGTTGAAAA+AGG + chr5_4:3804992-3805011 Msa0830780:CDS 25.0%
!!! ATCAGAAATTGATTTTGGAT+AGG - chr5_4:3805185-3805204 None:intergenic 25.0%
! ATTGTAACATTCTTCTTTGA+CGG - chr5_4:3805235-3805254 None:intergenic 25.0%
! CAATAAAATTAAACTGACCT+TGG - chr5_4:3805291-3805310 None:intergenic 25.0%
! TGTATTGAATTGATTGAAAC+AGG + chr5_4:3805360-3805379 Msa0830780:intron 25.0%
! AGGAAATCCAATATTAACAA+AGG + chr5_4:3805528-3805547 Msa0830780:CDS 25.0%
! GGAAATCCAATATTAACAAA+GGG + chr5_4:3805529-3805548 Msa0830780:CDS 25.0%
! TTGATTCCCTTTGTTAATAT+TGG - chr5_4:3805538-3805557 None:intergenic 25.0%
!! GTTAGAAAAAAAGTATATGG+AGG + chr5_4:3805585-3805604 Msa0830780:CDS 25.0%
!!! CTTGTTTTCAGATTTAAACT+AGG - chr5_4:3805630-3805649 None:intergenic 25.0%
! TTTGTCTTTAACCTGTTAAA+TGG - chr5_4:3805663-3805682 None:intergenic 25.0%
TTGAAGACAGAACTACAAAA+TGG + chr5_4:3803400-3803419 Msa0830780:CDS 30.0%
CAAGAAAATATGATGTGGAA+TGG + chr5_4:3803673-3803692 Msa0830780:CDS 30.0%
!!! ATGATCCAAAACTTTTTCAG+TGG + chr5_4:3803697-3803716 Msa0830780:CDS 30.0%
! AATCTCCACTGAAAAAGTTT+TGG - chr5_4:3803705-3803724 None:intergenic 30.0%
!!! AAACTTTTTCAGTGGAGATT+TGG + chr5_4:3803705-3803724 Msa0830780:CDS 30.0%
GAGATTTGGCAAACAATATT+TGG + chr5_4:3803719-3803738 Msa0830780:CDS 30.0%
! ATTCTTTGAAGAAGTGAGTT+TGG - chr5_4:3803835-3803854 None:intergenic 30.0%
!! ACAGTAATGATAAGGTATTG+TGG + chr5_4:3803925-3803944 Msa0830780:CDS 30.0%
GATCCTAACAAAACACTAAT+TGG - chr5_4:3803951-3803970 None:intergenic 30.0%
GTGAGAAAGTGATAACAAAT+TGG - chr5_4:3804099-3804118 None:intergenic 30.0%
! GTTTCCATGGTAAATGTTTT+TGG - chr5_4:3804318-3804337 None:intergenic 30.0%
GTAGGATATTACAAGGATTA+AGG - chr5_4:3804340-3804359 None:intergenic 30.0%
! GCTTTTAGTAGGATATTACA+AGG - chr5_4:3804347-3804366 None:intergenic 30.0%
!!! ATATGTTTTGAGTTGTTGAC+AGG + chr5_4:3804605-3804624 Msa0830780:CDS 30.0%
!!! TATGTTTTGAGTTGTTGACA+GGG + chr5_4:3804606-3804625 Msa0830780:CDS 30.0%
AGGATTGATCAAAACATACT+CGG - chr5_4:3804840-3804859 None:intergenic 30.0%
CTACCCTTATTATCTATAGT+AGG - chr5_4:3805055-3805074 None:intergenic 30.0%
TGCATCCATAATTAAAGATC+TGG + chr5_4:3805156-3805175 Msa0830780:CDS 30.0%
GGTTACCAGATCTTTAATTA+TGG - chr5_4:3805164-3805183 None:intergenic 30.0%
!! GTGTCATCAGAAATTGATTT+TGG - chr5_4:3805190-3805209 None:intergenic 30.0%
TTGTAACATTCTTCTTTGAC+GGG - chr5_4:3805234-3805253 None:intergenic 30.0%
!! GATTTTGTTGCTTGCAATTT+AGG - chr5_4:3805390-3805409 None:intergenic 30.0%
TTAACCTGTTAAATGGTGAT+TGG - chr5_4:3805656-3805675 None:intergenic 30.0%
! AACTATCCATATCTGAAACA+TGG - chr5_4:3805833-3805852 None:intergenic 30.0%
TTCTTACATAAGGACTCAAA+GGG - chr5_4:3805962-3805981 None:intergenic 30.0%
CCATATGTTGTTCTTACATA+AGG - chr5_4:3805972-3805991 None:intergenic 30.0%
CCTTATGTAAGAACAACATA+TGG + chr5_4:3805969-3805988 Msa0830780:CDS 30.0%
! TTGGATTCAAAAGATTGGTC+TGG + chr5_4:3803495-3803514 Msa0830780:CDS 35.0%
!! TGGATTCAAAAGATTGGTCT+GGG + chr5_4:3803496-3803515 Msa0830780:CDS 35.0%
GCTTGCAAGAAAATATGATG+TGG + chr5_4:3803668-3803687 Msa0830780:CDS 35.0%
!! TGGCCAATTAGTGTTTTGTT+AGG + chr5_4:3803945-3803964 Msa0830780:CDS 35.0%
! GAAAGAGTTTTCTCTTGTGA+CGG + chr5_4:3804163-3804182 Msa0830780:CDS 35.0%
!! AGTTGATGAACAAGGATTTG+TGG + chr5_4:3804186-3804205 Msa0830780:CDS 35.0%
ACATACATGAGAGAGAATTG+TGG + chr5_4:3804209-3804228 Msa0830780:CDS 35.0%
! GATTTTGTTCTCTATACCTG+TGG + chr5_4:3804244-3804263 Msa0830780:CDS 35.0%
!!! CATGGTAAATGTTTTTGGAG+TGG - chr5_4:3804313-3804332 None:intergenic 35.0%
CACTCCAAAAACATTTACCA+TGG + chr5_4:3804311-3804330 Msa0830780:CDS 35.0%
TACAAGGATTAAGGTTTCCA+TGG - chr5_4:3804331-3804350 None:intergenic 35.0%
!!! GTGAGTTTCTAGCTTTTAGT+AGG - chr5_4:3804358-3804377 None:intergenic 35.0%
AAAGCTAGAAACTCACAAGA+AGG + chr5_4:3804362-3804381 Msa0830780:CDS 35.0%
CAAGCAAAAGTTGTTGGATT+TGG + chr5_4:3804392-3804411 Msa0830780:CDS 35.0%
GGATTGTCATCTGTTGAAAA+TGG + chr5_4:3804413-3804432 Msa0830780:CDS 35.0%
! AATTGGATTATGTGTTGGTG+AGG - chr5_4:3804462-3804481 None:intergenic 35.0%
TCACCAACACATAATCCAAT+TGG + chr5_4:3804461-3804480 Msa0830780:CDS 35.0%
TCACCAATTGGATTATGTGT+TGG - chr5_4:3804467-3804486 None:intergenic 35.0%
CAGGTGCATACCAAATTATA+GGG - chr5_4:3804499-3804518 None:intergenic 35.0%
TCAGGTGCATACCAAATTAT+AGG - chr5_4:3804500-3804519 None:intergenic 35.0%
TATAATTTGGTATGCACCTG+AGG + chr5_4:3804499-3804518 Msa0830780:CDS 35.0%
TTTCTCTGAGTACTTACAAG+AGG - chr5_4:3804561-3804580 None:intergenic 35.0%
CATACCAAAGCTATATGCAT+CGG - chr5_4:3804585-3804604 None:intergenic 35.0%
ACCAACCAAAATATCAAAGC+AGG + chr5_4:3804668-3804687 Msa0830780:CDS 35.0%
!!! TCCTGCTTTGATATTTTGGT+TGG - chr5_4:3804672-3804691 None:intergenic 35.0%
! TCTCTCCTGCTTTGATATTT+TGG - chr5_4:3804676-3804695 None:intergenic 35.0%
AAAATATCAAAGCAGGAGAG+AGG + chr5_4:3804675-3804694 Msa0830780:CDS 35.0%
CTACAAATAGATGAGAAACC+AGG - chr5_4:3804779-3804798 None:intergenic 35.0%
CTGGTTTCTCATCTATTTGT+AGG + chr5_4:3804777-3804796 Msa0830780:CDS 35.0%
! AGTTCAAGCTGATTTAGTTC+AGG - chr5_4:3804860-3804879 None:intergenic 35.0%
TCAATGTCACAACAATCTAC+AGG - chr5_4:3804893-3804912 None:intergenic 35.0%
GTAGATTGTTGTGACATTGA+AGG + chr5_4:3804893-3804912 Msa0830780:CDS 35.0%
! TTTTCTCAAGAGTTTTCCTG+TGG + chr5_4:3804919-3804938 Msa0830780:CDS 35.0%
ATATTATATGTCCTCTCCAC+AGG - chr5_4:3804938-3804957 None:intergenic 35.0%
TGTAACATTCTTCTTTGACG+GGG - chr5_4:3805233-3805252 None:intergenic 35.0%
! TTCTTTGGCTTCATTTGTGA+TGG - chr5_4:3805265-3805284 None:intergenic 35.0%
TCATTACCACCAACATTATC+TGG + chr5_4:3805408-3805427 Msa0830780:CDS 35.0%
AACTTGATGTCAATGATGAC+TGG - chr5_4:3805461-3805480 None:intergenic 35.0%
CTATAACCCCAGTTAAAAGA+AGG + chr5_4:3805481-3805500 Msa0830780:CDS 35.0%
! TTGACACGTCTTATTCTTGT+TGG - chr5_4:3805720-3805739 None:intergenic 35.0%
! GATAGTTCTTTGAAGATACG+AGG + chr5_4:3805846-3805865 Msa0830780:CDS 35.0%
GTTCTTACATAAGGACTCAA+AGG - chr5_4:3805963-3805982 None:intergenic 35.0%
!! TGGAAGTCTAAAAGCGCTTA+TGG + chr5_4:3803269-3803288 Msa0830780:CDS 40.0%
ATGCTAGAGTGAATATGTCG+TGG - chr5_4:3803341-3803360 None:intergenic 40.0%
ACACAATCGCAGATGAGATA+AGG + chr5_4:3803364-3803383 Msa0830780:CDS 40.0%
! TCTCTAAGAGGACATTCAAG+AGG - chr5_4:3803429-3803448 None:intergenic 40.0%
! CTTTCCAGGGTATTCAAAGA+AGG + chr5_4:3803450-3803469 Msa0830780:CDS 40.0%
TTCACCTTCTTTGAATACCC+TGG - chr5_4:3803457-3803476 None:intergenic 40.0%
!! TTTGCTTTGCTATTTCCCTG+CGG + chr5_4:3803572-3803591 Msa0830780:CDS 40.0%
AGAATGCTTGGAGAGAAGAT+AGG + chr5_4:3803769-3803788 Msa0830780:CDS 40.0%
! GAAGCACTCAAGGAGAAAAA+AGG + chr5_4:3803804-3803823 Msa0830780:CDS 40.0%
GATCCAAAGATTACCAAGTG+AGG + chr5_4:3803967-3803986 Msa0830780:CDS 40.0%
! TCTCCTCACTTGGTAATCTT+TGG - chr5_4:3803973-3803992 None:intergenic 40.0%
TTACCAAGTGAGGAGAAGAT+TGG + chr5_4:3803977-3803996 Msa0830780:CDS 40.0%
TACCAAGTGAGGAGAAGATT+GGG + chr5_4:3803978-3803997 Msa0830780:CDS 40.0%
! TAGGACAAAGTTTTGCTCTG+AGG + chr5_4:3804033-3804052 Msa0830780:CDS 40.0%
!!! TTTGCTCTGAGGCATTTTCT+TGG + chr5_4:3804044-3804063 Msa0830780:CDS 40.0%
!!! TTGCTCTGAGGCATTTTCTT+GGG + chr5_4:3804045-3804064 Msa0830780:CDS 40.0%
GAGAACAAAATCTGTCTCCT+TGG - chr5_4:3804236-3804255 None:intergenic 40.0%
TTTGTTCTCTATACCTGTGG+TGG + chr5_4:3804247-3804266 Msa0830780:CDS 40.0%
GGTTGATCTCATGCTTCAAA+TGG + chr5_4:3804268-3804287 Msa0830780:CDS 40.0%
GGGTTAATCTCTTCACCAAT+TGG - chr5_4:3804479-3804498 None:intergenic 40.0%
! TCTAGCTCAGTTAAAACCTC+AGG - chr5_4:3804518-3804537 None:intergenic 40.0%
AAAGCCGATGCATATAGCTT+TGG + chr5_4:3804578-3804597 Msa0830780:CDS 40.0%
! GACAGGGAAAATTCCTTTTG+AGG + chr5_4:3804622-3804641 Msa0830780:CDS 40.0%
!!! AGATATTTTGGCGAGCGATA+TGG - chr5_4:3804710-3804729 None:intergenic 40.0%
TGTCACAACAATCTACAGGT+GGG - chr5_4:3804889-3804908 None:intergenic 40.0%
ATGTCACAACAATCTACAGG+TGG - chr5_4:3804890-3804909 None:intergenic 40.0%
CATCTTCACAAACTGTGCTT+TGG - chr5_4:3805132-3805151 None:intergenic 40.0%
ATGAAGCCAAAGAAAGACCA+AGG + chr5_4:3805271-3805290 Msa0830780:CDS 40.0%
! AACTGACCTTGGTCTTTCTT+TGG - chr5_4:3805280-3805299 None:intergenic 40.0%
TACCACCAACATTATCTGGT+CGG + chr5_4:3805412-3805431 Msa0830780:CDS 40.0%
TCGGGTTTCAAGGACAAATA+AGG + chr5_4:3805431-3805450 Msa0830780:CDS 40.0%
!! TTGGAGGCCTTCTTTTAACT+GGG - chr5_4:3805491-3805510 None:intergenic 40.0%
! TTTGGAGGCCTTCTTTTAAC+TGG - chr5_4:3805492-3805511 None:intergenic 40.0%
!!! TCAGATTCTGAGACTTTTGG+AGG - chr5_4:3805507-3805526 None:intergenic 40.0%
!!! CTCTCAGATTCTGAGACTTT+TGG - chr5_4:3805510-3805529 None:intergenic 40.0%
CAAAAGTCTCAGAATCTGAG+AGG + chr5_4:3805508-3805527 Msa0830780:CDS 40.0%
GAGACCAATCACCATTTAAC+AGG + chr5_4:3805649-3805668 Msa0830780:CDS 40.0%
GTACTAACAACAGCATTGTG+AGG + chr5_4:3805742-3805761 Msa0830780:CDS 40.0%
AGCATTGTGAGGATGCAAAA+AGG + chr5_4:3805753-3805772 Msa0830780:CDS 40.0%
GCATTGTGAGGATGCAAAAA+GGG + chr5_4:3805754-3805773 Msa0830780:CDS 40.0%
TATGACCTTGAAGGACTCAT+TGG - chr5_4:3805795-3805814 None:intergenic 40.0%
ATGCTGCCATGTTTCAGATA+TGG + chr5_4:3805824-3805843 Msa0830780:CDS 40.0%
CTCAAAGGACTCAATGGAAA+TGG - chr5_4:3805882-3805901 None:intergenic 40.0%
TATGGACTCAAAGGACTCAA+TGG - chr5_4:3805888-3805907 None:intergenic 40.0%
TTGCTCACATATGGACTCAA+AGG - chr5_4:3805897-3805916 None:intergenic 40.0%
GTCCATATGTGAGCAATCAA+AGG + chr5_4:3805901-3805920 Msa0830780:CDS 40.0%
GTCCTTTGATTGCTCACATA+TGG - chr5_4:3805906-3805925 None:intergenic 40.0%
AGCAATCAAAGGACTAGAAG+AGG + chr5_4:3805912-3805931 Msa0830780:CDS 40.0%
TCCTCTTAGAGAGCTTTCCA+GGG + chr5_4:3803437-3803456 Msa0830780:CDS 45.0%
ATTGAAGCGATCGAGAATGC+TGG + chr5_4:3803597-3803616 Msa0830780:CDS 45.0%
TTGAAGCGATCGAGAATGCT+GGG + chr5_4:3803598-3803617 Msa0830780:CDS 45.0%
GCAAGCAATTGGAGAATGCT+TGG + chr5_4:3803757-3803776 Msa0830780:CDS 45.0%
ATGCTTGGAGAGAAGATAGG+TGG + chr5_4:3803772-3803791 Msa0830780:CDS 45.0%
TTCCCAATCTTCTCCTCACT+TGG - chr5_4:3803983-3804002 None:intergenic 45.0%
AAGTGAGGAGAAGATTGGGA+AGG + chr5_4:3803982-3804001 Msa0830780:CDS 45.0%
AGTGAGGAGAAGATTGGGAA+GGG + chr5_4:3803983-3804002 Msa0830780:CDS 45.0%
!!! TGCTCTGAGGCATTTTCTTG+GGG + chr5_4:3804046-3804065 Msa0830780:CDS 45.0%
!! TGTGACGGAGTTGATGAACA+AGG + chr5_4:3804178-3804197 Msa0830780:CDS 45.0%
TGAGAGAGAATTGTGGTCCA+AGG + chr5_4:3804216-3804235 Msa0830780:CDS 45.0%
ATCTCATGCTTCAAATGGCC+AGG + chr5_4:3804273-3804292 Msa0830780:CDS 45.0%
TCTCATGCTTCAAATGGCCA+GGG + chr5_4:3804274-3804293 Msa0830780:CDS 45.0%
! TCAAGAGTTTTCCTGTGGAG+AGG + chr5_4:3804924-3804943 Msa0830780:CDS 45.0%
TAGTGAGTCTGAGCCAACAA+AGG + chr5_4:3805072-3805091 Msa0830780:CDS 45.0%
ACAGTAGCCACATCCTTTGT+TGG - chr5_4:3805088-3805107 None:intergenic 45.0%
ACCACCAACATTATCTGGTC+GGG + chr5_4:3805413-3805432 Msa0830780:CDS 45.0%
GAAACCCGACCAGATAATGT+TGG - chr5_4:3805420-3805439 None:intergenic 45.0%
CATTATCTGGTCGGGTTTCA+AGG + chr5_4:3805421-3805440 Msa0830780:CDS 45.0%
!! TGGAGGCCTTCTTTTAACTG+GGG - chr5_4:3805490-3805509 None:intergenic 45.0%
CTTCTGGTGTATGACCTTGA+AGG - chr5_4:3805804-3805823 None:intergenic 45.0%
TGAAACATGGCAGCATCTTC+TGG - chr5_4:3805820-3805839 None:intergenic 45.0%
CTCAAAGGGCTCAATGCTAA+TGG - chr5_4:3805948-3805967 None:intergenic 45.0%
CAAGAACCTCACCAATGTGC+CGG - chr5_4:3803251-3803270 None:intergenic 50.0%
GTCCTCTTAGAGAGCTTTCC+AGG + chr5_4:3803436-3803455 Msa0830780:CDS 50.0%
ACCCTGGAAAGCTCTCTAAG+AGG - chr5_4:3803441-3803460 None:intergenic 50.0%
CGATCGCTTCAATAACCGCA+GGG - chr5_4:3803590-3803609 None:intergenic 50.0%
TCGATCGCTTCAATAACCGC+AGG - chr5_4:3803591-3803610 None:intergenic 50.0%
TGAAGCGATCGAGAATGCTG+GGG + chr5_4:3803599-3803618 Msa0830780:CDS 50.0%
AGAATGCTGGGGAGATGTCA+GGG + chr5_4:3803610-3803629 Msa0830780:CDS 50.0%
CTTGGAGAGAAGATAGGTGG+AGG + chr5_4:3803775-3803794 Msa0830780:CDS 50.0%
!! GAGGCTCATAGAAGCACTCA+AGG + chr5_4:3803794-3803813 Msa0830780:CDS 50.0%
GTGAGGAGAAGATTGGGAAG+GGG + chr5_4:3803984-3804003 Msa0830780:CDS 50.0%
TGAGGAGAAGATTGGGAAGG+GGG + chr5_4:3803985-3804004 Msa0830780:CDS 50.0%
GGGAAGGGGGAAGGAATTTA+AGG + chr5_4:3803998-3804017 Msa0830780:CDS 50.0%
AGCATGAGATCAACCACCAC+AGG - chr5_4:3804263-3804282 None:intergenic 50.0%
CTCATGCTTCAAATGGCCAG+GGG + chr5_4:3804275-3804294 Msa0830780:CDS 50.0%
GTGGAGATATTCAATGCCCC+TGG - chr5_4:3804294-3804313 None:intergenic 50.0%
GGCGAGCGATATGGAAACAA+AGG - chr5_4:3804701-3804720 None:intergenic 50.0%
GTCTGAGCCAACAAAGGATG+TGG + chr5_4:3805078-3805097 Msa0830780:CDS 50.0%
ACCCGACCAGATAATGTTGG+TGG - chr5_4:3805417-3805436 None:intergenic 50.0%
GACCTTGAAGGACTCATTGG+CGG - chr5_4:3805792-3805811 None:intergenic 50.0%
ATGGAACAGCTCCGGCACAT+TGG + chr5_4:3803237-3803256 Msa0830780:CDS 55.0%
CGGCACATTGGTGAGGTTCT+TGG + chr5_4:3803249-3803268 Msa0830780:CDS 55.0%
GAGAATGCTGGGGAGATGTC+AGG + chr5_4:3803609-3803628 Msa0830780:CDS 55.0%
GGAGATGTCAGGGTTGGATC+AGG + chr5_4:3803620-3803639 Msa0830780:CDS 55.0%
GAGAAGATTGGGAAGGGGGA+AGG + chr5_4:3803989-3804008 Msa0830780:CDS 55.0%
GAGAAACCAGGACGCTGAGA+CGG - chr5_4:3804767-3804786 None:intergenic 55.0%
CACCGCCAATGAGTCCTTCA+AGG + chr5_4:3805787-3805806 Msa0830780:CDS 55.0%
ACAGCTCCGGCACATTGGTG+AGG + chr5_4:3803242-3803261 Msa0830780:CDS 60.0%
TGCTGGGGAGATGTCAGGGT+TGG + chr5_4:3803614-3803633 Msa0830780:CDS 60.0%
ACTGATCCGTCTCAGCGTCC+TGG + chr5_4:3804758-3804777 Msa0830780:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3803237 3806007 3803237 ID=Msa0830780;Name=Msa0830780
chr5_4 mRNA 3803237 3806007 3803237 ID=Msa0830780-mRNA-1;Parent=Msa0830780;Name=Msa0830780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|893
chr5_4 exon 3803237 3805292 3803237 ID=Msa0830780-mRNA-1:exon:1491;Parent=Msa0830780-mRNA-1
chr5_4 exon 3805382 3806007 3805382 ID=Msa0830780-mRNA-1:exon:1492;Parent=Msa0830780-mRNA-1
chr5_4 CDS 3803237 3805292 3803237 ID=Msa0830780-mRNA-1:cds;Parent=Msa0830780-mRNA-1
chr5_4 CDS 3805382 3806007 3805382 ID=Msa0830780-mRNA-1:cds;Parent=Msa0830780-mRNA-1
Gene Sequence

>Msa0830780

ATGGAACAGCTCCGGCACATTGGTGAGGTTCTTGGAAGTCTAAAAGCGCTTATGGTTTTAAGCGACGAAATTCAAATCAATCAACGACAATGTTGTTTGCTCCACGACATATTCACTCTAGCATTCGACACAATCGCAGATGAGATAAGGCAGAATCTGAAGCTTGAAGACAGAACTACAAAATGGAAGCCTCTTGAATGTCCTCTTAGAGAGCTTTCCAGGGTATTCAAAGAAGGTGAAATATACATTAAGCATTGTTTGGATTCAAAAGATTGGTCTGGGAAAGCACTCACACTTTCTCAGAACAGAGAATGTGTTGAGTTTCACATTCATAATTTGCTTTGCTATTTCCCTGCGGTTATTGAAGCGATCGAGAATGCTGGGGAGATGTCAGGGTTGGATCAGGATGAGAATTCGAAGAAGAAATTGATGCTTGCAAGAAAATATGATGTGGAATGGAATGATCCAAAACTTTTTCAGTGGAGATTTGGCAAACAATATTTGGTTCCAAAAGAAATTTGCAAGCAATTGGAGAATGCTTGGAGAGAAGATAGGTGGAGGCTCATAGAAGCACTCAAGGAGAAAAAAGGTTCTTCCAAACTCACTTCTTCAAAGAATGATCAACATTTTGCAGATATGTTGTTGAAGAAATTGATGAATGGTAATTCGGATAAAACTAATCACAAAAACAGTAATGATAAGGTATTGTGGCCAATTAGTGTTTTGTTAGGATCCAAAGATTACCAAGTGAGGAGAAGATTGGGAAGGGGGAAGGAATTTAAGGAAATTCAATGGTTAGGACAAAGTTTTGCTCTGAGGCATTTTCTTGGGGAGAGAGAAGCTTATGAAAATGAGATTTCCAATTTGTTATCACTTTCTCACCCAAACATATTGCAATATCTATGTGGTTTTTATGATGAAGAGAAGAAAGAGTTTTCTCTTGTGACGGAGTTGATGAACAAGGATTTGTGGACATACATGAGAGAGAATTGTGGTCCAAGGAGACAGATTTTGTTCTCTATACCTGTGGTGGTTGATCTCATGCTTCAAATGGCCAGGGGCATTGAATATCTCCACTCCAAAAACATTTACCATGGAAACCTTAATCCTTGTAATATCCTACTAAAAGCTAGAAACTCACAAGAAGGTTATTTTCAAGCAAAAGTTGTTGGATTTGGATTGTCATCTGTTGAAAATGGTGAAATTTATAATGCTTCTAGATCCTCACCAACACATAATCCAATTGGTGAAGAGATTAACCCTATAATTTGGTATGCACCTGAGGTTTTAACTGAGCTAGAACAAATGAAAAATGCTTCTACCTCTTGTAAGTACTCAGAGAAAGCCGATGCATATAGCTTTGGTATGATATGTTTTGAGTTGTTGACAGGGAAAATTCCTTTTGAGGATAATCATTTTCAAGGGATTAGAACCAACCAAAATATCAAAGCAGGAGAGAGGCCTTTGTTTCCATATCGCTCGCCAAAATATCTTGTGAGTTTGATCAAAAAATGTTGGCAAACTGATCCGTCTCAGCGTCCTGGTTTCTCATCTATTTGTAGGATTTTGCGCTACATCAAAAAGTTTCTTTCAATGAACACCGAGTATGTTTTGATCAATCCTGAACTAAATCAGCTTGAACTTCAGAACCCACCTGTAGATTGTTGTGACATTGAAGGAATTTTTCTCAAGAGTTTTCCTGTGGAGAGGACATATAATATGTCTTGTGTTTCACAAATACCTTATGAAATGTTTGCTTATAAAGTTGTTGAAAAAGGGAAGATTAATAATCAGAATCTGAGTAATAATACTATTCCTACTATAGATAATAAGGGTAGTGAGTCTGAGCCAACAAAGGATGTGGCTACTGTTCGTAGCGAAGAAAGTGATGACCAAAGCACAGTTTGTGAAGATGTTGATGCATCCATAATTAAAGATCTGGTAACCTATCCAAAATCAATTTCTGATGACACACAGTCTATTTTTTATGATACCCCGTCAAAGAAGAATGTTACAATAAAGAAACCATCACAAATGAAGCCAAAGAAAGACCAAGGAACGCCTAAATTGCAAGCAACAAAATCATTACCACCAACATTATCTGGTCGGGTTTCAAGGACAAATAAGGCGAACCAGTCATCATTGACATCAAGTTCTATAACCCCAGTTAAAAGAAGGCCTCCAAAAGTCTCAGAATCTGAGAGGAAATCCAATATTAACAAAGGGAATCAATCAGCATCAGTGTCAACTTCAAGCTCAGTTAGAAAAAAAGTATATGGAGGCAATGTCTCAGATTCTAAGCCTAGTTTAAATCTGAAAACAAGAGACCAATCACCATTTAACAGGTTAAAGACAAAAAAATCACAACTAACGATGAATTCTTCTTCGAGTCCAACAAGAATAAGACGTGTCAATAGTACTAACAACAGCATTGTGAGGATGCAAAAAGGGTTCATTTCAACACCGCCAATGAGTCCTTCAAGGTCATACACCAGAAGATGCTGCCATGTTTCAGATATGGATAGTTCTTTGAAGATACGAGGTAGATTGTCACCATTTCCATTGAGTCCTTTGAGTCCATATGTGAGCAATCAAAGGACTAGAAGAGGAAGCTTGTCACCATTAGCATTGAGCCCTTTGAGTCCTTATGTAAGAACAACATATGGTCATGTCTCAGATTAA
Protein sequence

>Msa0830780

MEQLRHIGEVLGSLKALMVLSDEIQINQRQCCLLHDIFTLAFDTIADEIRQNLKLEDRTTKWKPLECPLRELSRVFKEGEIYIKHCLDSKDWSGKALTLSQNRECVEFHIHNLLCYFPAVIEAIENAGEMSGLDQDENSKKKLMLARKYDVEWNDPKLFQWRFGKQYLVPKEICKQLENAWREDRWRLIEALKEKKGSSKLTSSKNDQHFADMLLKKLMNGNSDKTNHKNSNDKVLWPISVLLGSKDYQVRRRLGRGKEFKEIQWLGQSFALRHFLGEREAYENEISNLLSLSHPNILQYLCGFYDEEKKEFSLVTELMNKDLWTYMRENCGPRRQILFSIPVVVDLMLQMARGIEYLHSKNIYHGNLNPCNILLKARNSQEGYFQAKVVGFGLSSVENGEIYNASRSSPTHNPIGEEINPIIWYAPEVLTELEQMKNASTSCKYSEKADAYSFGMICFELLTGKIPFEDNHFQGIRTNQNIKAGERPLFPYRSPKYLVSLIKKCWQTDPSQRPGFSSICRILRYIKKFLSMNTEYVLINPELNQLELQNPPVDCCDIEGIFLKSFPVERTYNMSCVSQIPYEMFAYKVVEKGKINNQNLSNNTIPTIDNKGSESEPTKDVATVRSEESDDQSTVCEDVDASIIKDLVTYPKSISDDTQSIFYDTPSKKNVTIKKPSQMKPKKDQGTPKLQATKSLPPTLSGRVSRTNKANQSSLTSSSITPVKRRPPKVSESERKSNINKGNQSASVSTSSSVRKKVYGGNVSDSKPSLNLKTRDQSPFNRLKTKKSQLTMNSSSSPTRIRRVNSTNNSIVRMQKGFISTPPMSPSRSYTRRCCHVSDMDSSLKIRGRLSPFPLSPLSPYVSNQRTRRGSLSPLALSPLSPYVRTTYGHVSD*